The following bug report has been submitted:
Platform: macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.10rc202505090204 (2025-05-09 02:04:01 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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"incident" : "8A2DB7BF-1879-4FB2-AD6C-B522924476C1",
"pid" : 12954,
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"cpuType" : "ARM-64",
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"bug_type" : "309",
"procLaunch" : "2025-05-20 14:57:17.3491 -0400",
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===== Log before crash start =====
UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/Autodock-chimeraX-
> PDB/Autodock/AIE- from tb.pdb"
> ui tool show Boltz
> toolshed show
> ui tool show "Find Cavities"
> kvfinder
0 cavities found for AIE- from tb.pdb #1
> view orient
> volume region all imageMode "full region"
No volumes specified
> close
> open "/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/PDB/Autodock/DNA-
> results.pdb" format pdb
No such file/path: /Users/chenmeizi/Desktop/AD Liquid
Biopdy/Data/PDB/Autodock/DNA-results.pdb
> open "/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/Autodock-chimeraX-
> PDB/ChimeraX/bind-2.pdb" format pdb
Chain information for bind-2.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
Computing secondary structure
> color bychain
> color bypolymer
> select ::name="UNK"
1005 atoms, 1065 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.5
> angleSlop 25.0 twoColors true reveal true retainCurrent true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.5 angstroms and 25 degrees
Models used:
1 bind-2.pdb
12 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392
/? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727
/? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036
/? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113
/? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560
/? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984
/? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885
/? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522
/? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046
/C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163
/D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940
/D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118
12 hydrogen bonds found
7 strict hydrogen bonds found
> hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.6
> angleSlop 25.0 twoColors true reveal true retainCurrent true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.6 angstroms and 25 degrees
Models used:
1 bind-2.pdb
16 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392
/? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727
/? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036
/? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113
/? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560
/? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984
/? UNK 900 O4 /C DA 48 O4' /? UNK 900 H91 3.567 2.955
/? UNK 900 O5 /C DT 55 O3' /? UNK 900 H21 3.561 2.628
/? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885
/? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522
/? UNK 900 O8 /C DC 58 O2 /? UNK 900 H11 3.732 3.110
/? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046
/? UNK 900 O9 /C DT 40 O2 /? UNK 900 H41 3.679 3.246
/C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163
/D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940
/D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118
16 hydrogen bonds found
7 strict hydrogen bonds found
> hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.6
> angleSlop 25.0 twoColors true reveal true retainCurrent true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.6 angstroms and 25 degrees
Models used:
1 bind-2.pdb
16 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392
/? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727
/? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036
/? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113
/? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560
/? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984
/? UNK 900 O4 /C DA 48 O4' /? UNK 900 H91 3.567 2.955
/? UNK 900 O5 /C DT 55 O3' /? UNK 900 H21 3.561 2.628
/? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885
/? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522
/? UNK 900 O8 /C DC 58 O2 /? UNK 900 H11 3.732 3.110
/? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046
/? UNK 900 O9 /C DT 40 O2 /? UNK 900 H41 3.679 3.246
/C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163
/D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940
/D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118
16 hydrogen bonds found
7 strict hydrogen bonds found
> set bgColor white
> lighting soft
> lighting full
> lighting simple
> lighting shadows true
> graphics silhouettes true
> select add #1
9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 3 models selected
> select subtract #1
Nothing selected
> show surfaces
> select nucleic-acid
8013 atoms, 8645 bonds, 252 residues, 1 model selected
> transparency (#!1 & sel) 60
> select add #1
9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 7 models selected
> select subtract #1
4 models selected
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting flat
> hide surfaces
> select /D
2001 atoms, 2156 bonds, 63 residues, 1 model selected
> ui tool show "Color Actions"
> color sel yellow
> color sel khaki
> color sel pale goldenrod
> color sel bisque
> color sel moccasin
> color sel dark green
> color sel antique white
> color sel linen
> color sel light goldenrod yellow
> color sel khaki
> color sel pale goldenrod
> color sel pale turquoise
> color sel dark sea green
> color sel dim gray
> color sel gray
> color sel burly wood
> color sel tan
> color sel light salmon
> color sel orange
> color sel peach puff
> color sel navajo white
> color sel moccasin
> color sel bisque
> color sel misty rose
> color sel pink
> color sel navajo white
> color sel moccasin
> color sel navajo white
> color sel moccasin
> color sel bisque
> select subtract #1.5
1 model selected
> select add #1.3
2004 atoms, 63 residues, 1 model selected
> ui tool show "Color Actions"
> color sel pink
> color sel thistle
> color sel pink
> select subtract #1.3
1 model selected
> select add #1.2
1999 atoms, 63 residues, 1 model selected
> ui tool show "Color Actions"
> color sel light green
> color sel aquamarine
> color sel pale turquoise
> color sel light cyan
> color sel lavender
> color sel medium spring green
> color sel medium aquamarine
> color sel teal
> color sel lime
> color sel light green
> color sel pale green
> color sel aquamarine
> color sel pale green
> color sel pale turquoise
> color sel powder blue
> color sel light steel blue
> color sel aquamarine
> color sel pale green
> color sel aquamarine
> color sel medium aquamarine
> color sel light sea green
> color sel turquoise
> color sel teal
> color sel steel blue
> color sel aquamarine
> color sel pale turquoise
> color sel light blue
> color sel light sky blue
> color sel light blue
> color sel powder blue
> color sel sky blue
> color sel pale green
> color sel aquamarine
> color sel sky blue
> color sel light sky blue
> color sel light steel blue
> color sel pale turquoise
> color sel light blue
> color sel powder blue
> color sel silver
> color sel powder blue
> color sel silver
> color sel dark slate gray
> color sel dim gray
> color sel gray
> color sel plum
> color sel dim gray
> color sel gray
> select subtract #1.2
1 model selected
> select add #1.4
2009 atoms, 63 residues, 1 model selected
> ui tool show "Color Actions"
> color sel pale turquoise
> color sel light blue
> color sel sky blue
> color sel light steel blue
> color sel medium slate blue
> color sel light steel blue
> color sel lavender
> color sel cornflower blue
> color sel sky blue
> color sel aquamarine
> color sel burly wood
> color sel pale turquoise
> color sel light steel blue
> color sel powder blue
> color sel light steel blue
> select subtract #1.4
1 model selected
> select ::name="UNK"
1005 atoms, 1065 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 1005 atom styles
> style sel sphere
Changed 1005 atom styles
> style sel stick
Changed 1005 atom styles
> style sel ball
Changed 1005 atom styles
> style sel stick
Changed 1005 atom styles
> ui tool show "Color Actions"
> color sel khaki
> color sel gold
> color sel lime
> color sel medium spring green
> color sel dark turquoise
> color sel medium spring green
> color sel lime
> color sel chartreuse
> color sel lawn green
> color sel spring green
> color sel medium spring green
> color sel green yellow
> color sel medium spring green
> color sel yellow green
> color sel medium spring green
> select add #1
9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 3 models selected
> select subtract #1
4 models selected
> select ::name="UNK"
1005 atoms, 1065 bonds, 1 residue, 1 model selected
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M4
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac16,1
Model Number: MW2X3LL/A
Chip: Apple M4
Total Number of Cores: 10 (4 performance and 6 efficiency)
Memory: 16 GB
System Firmware Version: 11881.121.1
OS Loader Version: 11881.121.1
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 10 hours, 57 minutes
Graphics/Displays:
Apple M4:
Chipset Model: Apple M4
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.3.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.3.2
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.3
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.5
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.6
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10rc202505090204
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.1
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.8.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.57.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.13.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
narwhals: 1.39.0
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 2.2.5
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
plotly: 6.0.1
pluggy: 1.5.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pyKVFinder: 0.8.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.3.5
pytest-cov: 6.1.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 26.4.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tomlkit: 0.13.2
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.13.2
tzdata: 2025.2
urllib3: 2.4.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Yet another one.