Session restore: OverflowError: int too big to convert

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/Tau_CongoRed/job261/postprocess_masked.mrc"

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00132, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.006925

> volume #1 level 0.005133

> volume #1 level 0.005

> volume #1 level 0.006

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/Tau_CongoRed/CR_fit_6layer_map_5site_9-coot-0_delet_final.pdb"

Chain information for CR_fit_6layer_map_5site_9-coot-0_delet_final.pdb #2  
---  
Chain | Description  
A B C D E F G H I J K L | No description available  
  

> style stick

Changed 7144 atom styles  

> volume #1 level 0.005

> ui tool show "Hide Dust"

> surface dust #1 size 3

> volume #1 level 0.0045

> volume #1 level 0.004

> volume #1 level 0.0045

> volume #1 level 0.004

> volume #1 level 0.0045

> volume #1 level 0.005

> hide #2 models

> surface dust #1 size 5

[Repeated 2 time(s)]

> surface dust #1 size 4

[Repeated 2 time(s)]

> surface dust #1 size 3

[Repeated 1 time(s)]

> hide #!1 models

> show #2 models

Drag select of 11 atoms, 9 bonds  
Drag select of 4 atoms, 7 bonds  
Drag select of 13 atoms, 12 bonds  
Drag select of 116 atoms, 134 bonds  

> select up

166 atoms, 165 bonds, 10 residues, 1 model selected  

> select up

460 atoms, 510 bonds, 10 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select up

4 atoms, 2 bonds, 3 residues, 1 model selected  

> select up

20 atoms, 19 bonds, 3 residues, 1 model selected  

> select up

588 atoms, 597 bonds, 78 residues, 1 model selected  

> select ~sel

6096 atoms, 6193 bonds, 798 residues, 3 models selected  

> select subtract #1

6096 atoms, 6193 bonds, 798 residues, 1 model selected  

> select add #1

6096 atoms, 6193 bonds, 798 residues, 3 models selected  

> select subtract #1

6096 atoms, 6193 bonds, 798 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> undo

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> close #2

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/Tau_BF227/job295/postprocess_masked.mrc"

Opened postprocess_masked.mrc as #2, grid size 320,320,320, pixel 0.83, shown
at level 0.000201, step 2, values float32  

> close #1

> volume #2 step 1

> volume #2 level 0.004371

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/Tau_BF227/job297/postprocess_masked.mrc"

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00701, step 2, values float32  

> close #1

> volume #2 level 0.002723

> volume #2 level 0.004177

> volume #2 level 0.003

> volume #2 level 0.006006

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/apo/job222/postprocess_masked.mrc"

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00901, step 2, values float32  

> close #1

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/apo/job225/postprocess_masked.mrc"

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00175, step 2, values float32  

> hide #!2 models

> volume #1 step 1

> volume #1 level 0.01287

> volume #1 level 0.01195

> close #1

> open D:/PTB129_Tracer/BF227/job114/postprocess_masked.mrc

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00253, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.009516

> close #1

> open D:/PTB129_Tracer/BF227/job106/postprocess_masked.mrc

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.00782, step 2, values float32  

> close #1

> open D:/PTB129_Tracer/BF227/job103/postprocess_masked.mrc

Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown
at level 0.000966, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.006922

> volume #1 level 0.006

> open D:/PTB129_Tracer/BF227/job061/postprocess_masked.mrc

Opened postprocess_masked.mrc as #3, grid size 320,320,320, pixel 0.83, shown
at level 0.000783, step 2, values float32  

> hide #!1 models

> volume #3 step 1

> volume #3 level 0.007452

> close #1-2

> volume #3 level 0.005123

> surface dust #3 size 3

> open "D:/PTB129_Tracer/Supplementary
> Figure/S5/Tau_BF227/site2_two_BF227_6layer_favor86.pdb"

Chain information for site2_two_BF227_6layer_favor86.pdb #1  
---  
Chain | Description  
E F G H I J L M N O P Q | No description available  
  

> style stick

Changed 7090 atom styles  

> hide #1 models

> show #1 models

> hide #!3 models

> select /P:336@CD

1 atom, 1 residue, 1 model selected  

> select add /G:333@N

2 atoms, 2 residues, 1 model selected  

> select up

3 atoms, 1 bond, 2 residues, 1 model selected  

> select up

13 atoms, 11 bonds, 2 residues, 1 model selected  

> select up

69 atoms, 68 bonds, 10 residues, 1 model selected  

> select up

1174 atoms, 1192 bonds, 154 residues, 1 model selected  

> select ~sel

5916 atoms, 6010 bonds, 772 residues, 3 models selected  

> select subtract #3

5916 atoms, 6010 bonds, 772 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> show #!3 models

> select add #3

2 models selected  

> select add #1

1174 atoms, 1192 bonds, 154 residues, 3 models selected  

> volume zone #3 nearAtoms sel & #1 range 4.98

> select subtract #3

1174 atoms, 1192 bonds, 154 residues, 1 model selected  

> select add #3

1174 atoms, 1192 bonds, 154 residues, 3 models selected  

> volume sel region all imageMode "full region"

> volume unzone sel

> mousemode rightMode "crop volume"

> surface dust #3 size 3

> ui tool show "Segment Map"

Segmenting postprocess_masked.mrc, density threshold 0.005123  
Showing 103 region surfaces  
1282 watershed regions, grouped to 103 regions  
Showing postprocess_masked.seg - 103 regions, 103 surfaces  

> select #2.42

1 model selected  

> select add #2.49

2 models selected  

> select add #2.41

3 models selected  

> select add #2.48

4 models selected  

> select add #2.71

5 models selected  

> select add #2.51

6 models selected  

> select add #2.47

7 models selected  
Ungrouped to 15 regions  
Ungrouped to 35 regions  
Ungrouped to 31 regions  
Ungrouped to 4 regions  

> select #2.41

1 model selected  
Drag select of 1943, 34 of 15444 triangles, 1939, 62 of 12088 triangles, 1984,
27 of 10048 triangles, 1734, 27 of 3268 triangles, 295, 6 of 1552 triangles,
315, 30 of 564 triangles, 118, 23 of 564 triangles, 3 postprocess_masked.mrc  

> select #2.121

1 model selected  

> select add #2.41

2 models selected  

> select add #2.163

3 models selected  

> select add #2.124

4 models selected  

> select add #2.156

5 models selected  

> select add #2.49

6 models selected  

> select add #2.119

7 models selected  

> select add #2.107

8 models selected  
Grouped 8 regions  

> select #2.61

1 model selected  

> select add #2.59

2 models selected  

> select add #2.45

3 models selected  

> select add #2.41

4 models selected  
Grouped 4 regions  

> select add #2.117

2 models selected  

> select add #2.113

3 models selected  

> select add #2.134

4 models selected  

> select add #2.153

5 models selected  

> select add #2.110

6 models selected  

> select add #2.148

7 models selected  

> select add #2.151

8 models selected  
Grouped 8 regions  

> select add #2.52

2 models selected  

> select add #2.73

3 models selected  

> select add #2.44

4 models selected  
Grouped 4 regions  
Ungrouped to 4 regions  

> select #2.49

1 model selected  

> select add #2.45

2 models selected  
Ungrouped to 4 regions  

> select #2.59

1 model selected  
Drag select of 1938, 17 of 10600 triangles, 1957, 11 of 8120 triangles, 1303,
11 of 1768 triangles, 1627, 11 of 1892 triangles, 3 postprocess_masked.mrc  

> select add #2.73

6 models selected  

> select #2.61

1 model selected  
Ungrouped to 2 regions  

> select #2.49

1 model selected  

> select #2.73

1 model selected  
Ungrouped to 4 regions  

> select #2.61

1 model selected  

> select add #2.110

2 models selected  

> select add #2.49

3 models selected  

> select add #2.59

4 models selected  

> select add #2.52

5 models selected  

> select subtract #2.52

4 models selected  
Grouped 4 regions  

> select #2.52

1 model selected  
Ungrouped to 3 regions  

> select #2.59

1 model selected  

> select add #2.73

2 models selected  

> select #2.73

1 model selected  
Ungrouped to 2 regions  

> select #2.61

1 model selected  

> select add #2.52

2 models selected  

> select add #2.59

3 models selected  

> select add #2.49

4 models selected  

> select add #2.44

5 models selected  
Grouped 5 regions  
Opened postprocess_masked_imasked as #4, grid size 320,320,320, pixel 0.83,
shown at step 1, values float32  

> select add #2

140 models selected  

> select subtract #2

Nothing selected  

> hide #!2 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> hide #!3 models

> show #!4 models

> surface dust #4 size 3

> hide #!4 models

> show #!3 models

> select add #3

2 models selected  

> select add #1

1174 atoms, 1192 bonds, 154 residues, 3 models selected  

> volume zone #3 nearAtoms sel & #1 range 4.98

> volume zone #3 nearAtoms sel & #1 range 2

> transparency sel 50

> select clear

> set bgColor white

> set bgColor #ffffff00

> hide #!3 models

> show #!4 models

Segmenting postprocess_masked_imasked, density threshold 0.005123  
Showing 13 region surfaces  
76 watershed regions, grouped to 13 regions  
Showing postprocess_masked_imasked.seg - 13 regions, 13 surfaces  

> select #2.8

1 model selected  
Ungrouped to 3 regions  

> select #2.9

1 model selected  

> select #2.7

1 model selected  
Ungrouped to 3 regions  

> select #2.2

1 model selected  

> select #2.4

1 model selected  
Ungrouped to 2 regions  

> select #2.19

1 model selected  

> select #2.19

1 model selected  

> select #2.6

1 model selected  

> select add #2.15

2 models selected  

> select add #2.17

3 models selected  

> select add #2.19

4 models selected  
Grouped 4 regions  
Opened postprocess_masked_imasked_imasked as #5, grid size 320,320,320, pixel
0.83, shown at step 1, values float32  

> hide #!4 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!4 models

> hide #!4 models

> show #!3 models

> select add #2

16 models selected  

> select subtract #2

Nothing selected  

> lighting full

> lighting flat

> color #5 #a2aec8ff models

> color #5 gold models

> color #5 #ffaa00ff models

> color #1 black

> color #1,3,5 byhetero

> color #3 #adadad80 models

> select add #3

2 models selected  

> select add #1

1174 atoms, 1192 bonds, 154 residues, 3 models selected  

> transparency sel 0

> transparency sel 50

> transparency sel 80

> select clear

> select add #3

2 models selected  

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes true width 3

> select clear

> save "D:/PTB129_Tracer/Paper/Figure/Figure 3/BF227_model_in_map_new.png"
> width 2000 height 1426 supersample 3 transparentBackground true

> show #!4 models

> hide #!4 models

> hide #!5 models

> hide #!3 models

> select add #3

2 models selected  

> show #!3 models

> graphics silhouettes false

> graphics silhouettes true

> volume sel region all imageMode "full region"

> volume unzone sel

> mousemode rightMode "crop volume"

> graphics silhouettes false

> lighting simple

> hide #1 models

> show #!4 models

> surface dust #3 size 3

> transparency sel 0

Segmenting postprocess_masked.mrc, density threshold 0.005123  
Showing 103 region surfaces  
1282 watershed regions, grouped to 103 regions  
Showing postprocess_masked.seg - 103 regions, 103 surfaces  

> select #2.48

1 model selected  

> select add #2.51

2 models selected  

> select add #2.71

3 models selected  

> select add #2.47

4 models selected  
Ungrouped to 8 regions  
Ungrouped to 17 regions  
Ungrouped to 14 regions  

> select #2.105

1 model selected  

> select add #2.127

2 models selected  

> select add #2.124

3 models selected  

> select add #2.131

4 models selected  

> select add #2.51

5 models selected  

> select add #2.117

6 models selected  

> select add #2.111

7 models selected  
Grouped 7 regions  

> select #2.47

1 model selected  
Opened postprocess_masked_imasked as #6, grid size 320,320,320, pixel 0.83,
shown at step 1, values float32  

> hide #!6 models

> hide #!3 models

> hide #!2 models

> show #!6 models

> hide #!4 models

> show #!4 models

> surface dust #6 size 3

> ui tool show "Side View"

> color #4 red models

> color #4 #ff5500ff models

> color #4 #ff557fff models

> color #4 #ff007fff models

> color #4 red models

> color #4 #de0000ff models

> color #4 #c30000ff models

> color #4 #c36608ff models

> color #4 #c35b16ff models

> color #4 #c33708ff models

> color #4 #c34f15ff models

> color #4 #c35a05ff models

> color #4 #c34d1eff models

> color #4 #c3521eff models

> color #4 gold models

> color #4 #ffaa00ff models

> color #4 #ff7a0eff models

> color #4 #ff691eff models

> color #4 #ff512eff models

> color #4 #ff5918ff models

> open D:/PTB129_Tracer/BF227/job114/postprocess_masked.mrc

Opened postprocess_masked.mrc as #7, grid size 320,320,320, pixel 0.83, shown
at level 0.00253, step 2, values float32  

> volume #7 step 1

> volume #7 level 0.006939

> hide #!6 models

> hide #!4 models

> surface dust #7 size 4.98

> volume #7 level 0.009612

> close #7

> show #!4 models

> show #!6 models

> save "D:/PTB129_Tracer/Paper/Figure/Figure
> 3/BF227_site1_zoom_side_1rise.png" width 2000 height 1437 supersample 3
> transparentBackground true

> save "D:/PTB129_Tracer/Paper/Figure/Figure 3/bf227.cxs"

Traceback (most recent call last):  
File "msgpack\\_packer.pyx", line 177, in msgpack._cmsgpack.Packer._pack  
OverflowError: int too big to convert  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 630, in save  
fserialize(stream, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 65, in msgpack_serialize  
stream.write(packer.pack(obj))  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack  
File "msgpack\\_packer.pyx", line 184, in msgpack._cmsgpack.Packer._pack  
File "stringsource", line 67, in
cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap  
File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext  
RuntimeError: Can't convert object of type: <class 'int'>  
  
RuntimeError: Can't convert object of type:  
  
File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "msgpack\\_packer.pyx", line 177, in msgpack._cmsgpack.Packer._pack  
OverflowError: int too big to convert  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 899, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 630, in save  
fserialize(stream, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 65, in msgpack_serialize  
stream.write(packer.pack(obj))  
File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack  
File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack  
File "msgpack\\_packer.pyx", line 184, in msgpack._cmsgpack.Packer._pack  
File "stringsource", line 67, in
cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap  
File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext  
RuntimeError: Can't convert object of type: <class 'int'>  
  
RuntimeError: Can't convert object of type:  
  
File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 475.14
OpenGL renderer: NVIDIA GeForce GT 730/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: LENOVO
Model: 90L0CTO1WW
OS: Microsoft Windows 10 专业版 (Build 19045)
Memory: 17,106,743,296
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 3600 6-Core Processor              
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.11.0

[Eric Pettersen]

Version 1.5 -- I don't know if a newer version would help or not.

[Greg Couch]

Need data to reproduce.