Opened 5 months ago
Closed 5 months ago
#17766 closed defect (can't reproduce)
Session restore: OverflowError: int too big to convert
Reported by: | Owned by: | Greg Couch | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sessions | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.19045 ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "D:/PTB129_Tracer/Supplementary > Figure/S5/Tau_CongoRed/job261/postprocess_masked.mrc" Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00132, step 2, values float32 > volume #1 step 1 > volume #1 level 0.006925 > volume #1 level 0.005133 > volume #1 level 0.005 > volume #1 level 0.006 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/Tau_CongoRed/CR_fit_6layer_map_5site_9-coot-0_delet_final.pdb" Chain information for CR_fit_6layer_map_5site_9-coot-0_delet_final.pdb #2 --- Chain | Description A B C D E F G H I J K L | No description available > style stick Changed 7144 atom styles > volume #1 level 0.005 > ui tool show "Hide Dust" > surface dust #1 size 3 > volume #1 level 0.0045 > volume #1 level 0.004 > volume #1 level 0.0045 > volume #1 level 0.004 > volume #1 level 0.0045 > volume #1 level 0.005 > hide #2 models > surface dust #1 size 5 [Repeated 2 time(s)] > surface dust #1 size 4 [Repeated 2 time(s)] > surface dust #1 size 3 [Repeated 1 time(s)] > hide #!1 models > show #2 models Drag select of 11 atoms, 9 bonds Drag select of 4 atoms, 7 bonds Drag select of 13 atoms, 12 bonds Drag select of 116 atoms, 134 bonds > select up 166 atoms, 165 bonds, 10 residues, 1 model selected > select up 460 atoms, 510 bonds, 10 residues, 1 model selected > delete atoms sel > delete bonds sel > select up 4 atoms, 2 bonds, 3 residues, 1 model selected > select up 20 atoms, 19 bonds, 3 residues, 1 model selected > select up 588 atoms, 597 bonds, 78 residues, 1 model selected > select ~sel 6096 atoms, 6193 bonds, 798 residues, 3 models selected > select subtract #1 6096 atoms, 6193 bonds, 798 residues, 1 model selected > select add #1 6096 atoms, 6193 bonds, 798 residues, 3 models selected > select subtract #1 6096 atoms, 6193 bonds, 798 residues, 1 model selected > delete atoms sel > delete bonds sel > undo > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > close #2 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/Tau_BF227/job295/postprocess_masked.mrc" Opened postprocess_masked.mrc as #2, grid size 320,320,320, pixel 0.83, shown at level 0.000201, step 2, values float32 > close #1 > volume #2 step 1 > volume #2 level 0.004371 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/Tau_BF227/job297/postprocess_masked.mrc" Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00701, step 2, values float32 > close #1 > volume #2 level 0.002723 > volume #2 level 0.004177 > volume #2 level 0.003 > volume #2 level 0.006006 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/apo/job222/postprocess_masked.mrc" Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00901, step 2, values float32 > close #1 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/apo/job225/postprocess_masked.mrc" Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00175, step 2, values float32 > hide #!2 models > volume #1 step 1 > volume #1 level 0.01287 > volume #1 level 0.01195 > close #1 > open D:/PTB129_Tracer/BF227/job114/postprocess_masked.mrc Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00253, step 2, values float32 > volume #1 step 1 > volume #1 level 0.009516 > close #1 > open D:/PTB129_Tracer/BF227/job106/postprocess_masked.mrc Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.00782, step 2, values float32 > close #1 > open D:/PTB129_Tracer/BF227/job103/postprocess_masked.mrc Opened postprocess_masked.mrc as #1, grid size 320,320,320, pixel 0.83, shown at level 0.000966, step 2, values float32 > volume #1 step 1 > volume #1 level 0.006922 > volume #1 level 0.006 > open D:/PTB129_Tracer/BF227/job061/postprocess_masked.mrc Opened postprocess_masked.mrc as #3, grid size 320,320,320, pixel 0.83, shown at level 0.000783, step 2, values float32 > hide #!1 models > volume #3 step 1 > volume #3 level 0.007452 > close #1-2 > volume #3 level 0.005123 > surface dust #3 size 3 > open "D:/PTB129_Tracer/Supplementary > Figure/S5/Tau_BF227/site2_two_BF227_6layer_favor86.pdb" Chain information for site2_two_BF227_6layer_favor86.pdb #1 --- Chain | Description E F G H I J L M N O P Q | No description available > style stick Changed 7090 atom styles > hide #1 models > show #1 models > hide #!3 models > select /P:336@CD 1 atom, 1 residue, 1 model selected > select add /G:333@N 2 atoms, 2 residues, 1 model selected > select up 3 atoms, 1 bond, 2 residues, 1 model selected > select up 13 atoms, 11 bonds, 2 residues, 1 model selected > select up 69 atoms, 68 bonds, 10 residues, 1 model selected > select up 1174 atoms, 1192 bonds, 154 residues, 1 model selected > select ~sel 5916 atoms, 6010 bonds, 772 residues, 3 models selected > select subtract #3 5916 atoms, 6010 bonds, 772 residues, 1 model selected > delete atoms sel > delete bonds sel > show #!3 models > select add #3 2 models selected > select add #1 1174 atoms, 1192 bonds, 154 residues, 3 models selected > volume zone #3 nearAtoms sel & #1 range 4.98 > select subtract #3 1174 atoms, 1192 bonds, 154 residues, 1 model selected > select add #3 1174 atoms, 1192 bonds, 154 residues, 3 models selected > volume sel region all imageMode "full region" > volume unzone sel > mousemode rightMode "crop volume" > surface dust #3 size 3 > ui tool show "Segment Map" Segmenting postprocess_masked.mrc, density threshold 0.005123 Showing 103 region surfaces 1282 watershed regions, grouped to 103 regions Showing postprocess_masked.seg - 103 regions, 103 surfaces > select #2.42 1 model selected > select add #2.49 2 models selected > select add #2.41 3 models selected > select add #2.48 4 models selected > select add #2.71 5 models selected > select add #2.51 6 models selected > select add #2.47 7 models selected Ungrouped to 15 regions Ungrouped to 35 regions Ungrouped to 31 regions Ungrouped to 4 regions > select #2.41 1 model selected Drag select of 1943, 34 of 15444 triangles, 1939, 62 of 12088 triangles, 1984, 27 of 10048 triangles, 1734, 27 of 3268 triangles, 295, 6 of 1552 triangles, 315, 30 of 564 triangles, 118, 23 of 564 triangles, 3 postprocess_masked.mrc > select #2.121 1 model selected > select add #2.41 2 models selected > select add #2.163 3 models selected > select add #2.124 4 models selected > select add #2.156 5 models selected > select add #2.49 6 models selected > select add #2.119 7 models selected > select add #2.107 8 models selected Grouped 8 regions > select #2.61 1 model selected > select add #2.59 2 models selected > select add #2.45 3 models selected > select add #2.41 4 models selected Grouped 4 regions > select add #2.117 2 models selected > select add #2.113 3 models selected > select add #2.134 4 models selected > select add #2.153 5 models selected > select add #2.110 6 models selected > select add #2.148 7 models selected > select add #2.151 8 models selected Grouped 8 regions > select add #2.52 2 models selected > select add #2.73 3 models selected > select add #2.44 4 models selected Grouped 4 regions Ungrouped to 4 regions > select #2.49 1 model selected > select add #2.45 2 models selected Ungrouped to 4 regions > select #2.59 1 model selected Drag select of 1938, 17 of 10600 triangles, 1957, 11 of 8120 triangles, 1303, 11 of 1768 triangles, 1627, 11 of 1892 triangles, 3 postprocess_masked.mrc > select add #2.73 6 models selected > select #2.61 1 model selected Ungrouped to 2 regions > select #2.49 1 model selected > select #2.73 1 model selected Ungrouped to 4 regions > select #2.61 1 model selected > select add #2.110 2 models selected > select add #2.49 3 models selected > select add #2.59 4 models selected > select add #2.52 5 models selected > select subtract #2.52 4 models selected Grouped 4 regions > select #2.52 1 model selected Ungrouped to 3 regions > select #2.59 1 model selected > select add #2.73 2 models selected > select #2.73 1 model selected Ungrouped to 2 regions > select #2.61 1 model selected > select add #2.52 2 models selected > select add #2.59 3 models selected > select add #2.49 4 models selected > select add #2.44 5 models selected Grouped 5 regions Opened postprocess_masked_imasked as #4, grid size 320,320,320, pixel 0.83, shown at step 1, values float32 > select add #2 140 models selected > select subtract #2 Nothing selected > hide #!2 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > hide #!3 models > show #!4 models > surface dust #4 size 3 > hide #!4 models > show #!3 models > select add #3 2 models selected > select add #1 1174 atoms, 1192 bonds, 154 residues, 3 models selected > volume zone #3 nearAtoms sel & #1 range 4.98 > volume zone #3 nearAtoms sel & #1 range 2 > transparency sel 50 > select clear > set bgColor white > set bgColor #ffffff00 > hide #!3 models > show #!4 models Segmenting postprocess_masked_imasked, density threshold 0.005123 Showing 13 region surfaces 76 watershed regions, grouped to 13 regions Showing postprocess_masked_imasked.seg - 13 regions, 13 surfaces > select #2.8 1 model selected Ungrouped to 3 regions > select #2.9 1 model selected > select #2.7 1 model selected Ungrouped to 3 regions > select #2.2 1 model selected > select #2.4 1 model selected Ungrouped to 2 regions > select #2.19 1 model selected > select #2.19 1 model selected > select #2.6 1 model selected > select add #2.15 2 models selected > select add #2.17 3 models selected > select add #2.19 4 models selected Grouped 4 regions Opened postprocess_masked_imasked_imasked as #5, grid size 320,320,320, pixel 0.83, shown at step 1, values float32 > hide #!4 models > hide #!2 models > show #!2 models > hide #!2 models > show #!4 models > hide #!4 models > show #!3 models > select add #2 16 models selected > select subtract #2 Nothing selected > lighting full > lighting flat > color #5 #a2aec8ff models > color #5 gold models > color #5 #ffaa00ff models > color #1 black > color #1,3,5 byhetero > color #3 #adadad80 models > select add #3 2 models selected > select add #1 1174 atoms, 1192 bonds, 154 residues, 3 models selected > transparency sel 0 > transparency sel 50 > transparency sel 80 > select clear > select add #3 2 models selected > graphics silhouettes false > graphics silhouettes true > graphics silhouettes true width 3 > select clear > save "D:/PTB129_Tracer/Paper/Figure/Figure 3/BF227_model_in_map_new.png" > width 2000 height 1426 supersample 3 transparentBackground true > show #!4 models > hide #!4 models > hide #!5 models > hide #!3 models > select add #3 2 models selected > show #!3 models > graphics silhouettes false > graphics silhouettes true > volume sel region all imageMode "full region" > volume unzone sel > mousemode rightMode "crop volume" > graphics silhouettes false > lighting simple > hide #1 models > show #!4 models > surface dust #3 size 3 > transparency sel 0 Segmenting postprocess_masked.mrc, density threshold 0.005123 Showing 103 region surfaces 1282 watershed regions, grouped to 103 regions Showing postprocess_masked.seg - 103 regions, 103 surfaces > select #2.48 1 model selected > select add #2.51 2 models selected > select add #2.71 3 models selected > select add #2.47 4 models selected Ungrouped to 8 regions Ungrouped to 17 regions Ungrouped to 14 regions > select #2.105 1 model selected > select add #2.127 2 models selected > select add #2.124 3 models selected > select add #2.131 4 models selected > select add #2.51 5 models selected > select add #2.117 6 models selected > select add #2.111 7 models selected Grouped 7 regions > select #2.47 1 model selected Opened postprocess_masked_imasked as #6, grid size 320,320,320, pixel 0.83, shown at step 1, values float32 > hide #!6 models > hide #!3 models > hide #!2 models > show #!6 models > hide #!4 models > show #!4 models > surface dust #6 size 3 > ui tool show "Side View" > color #4 red models > color #4 #ff5500ff models > color #4 #ff557fff models > color #4 #ff007fff models > color #4 red models > color #4 #de0000ff models > color #4 #c30000ff models > color #4 #c36608ff models > color #4 #c35b16ff models > color #4 #c33708ff models > color #4 #c34f15ff models > color #4 #c35a05ff models > color #4 #c34d1eff models > color #4 #c3521eff models > color #4 gold models > color #4 #ffaa00ff models > color #4 #ff7a0eff models > color #4 #ff691eff models > color #4 #ff512eff models > color #4 #ff5918ff models > open D:/PTB129_Tracer/BF227/job114/postprocess_masked.mrc Opened postprocess_masked.mrc as #7, grid size 320,320,320, pixel 0.83, shown at level 0.00253, step 2, values float32 > volume #7 step 1 > volume #7 level 0.006939 > hide #!6 models > hide #!4 models > surface dust #7 size 4.98 > volume #7 level 0.009612 > close #7 > show #!4 models > show #!6 models > save "D:/PTB129_Tracer/Paper/Figure/Figure > 3/BF227_site1_zoom_side_1rise.png" width 2000 height 1437 supersample 3 > transparentBackground true > save "D:/PTB129_Tracer/Paper/Figure/Figure 3/bf227.cxs" Traceback (most recent call last): File "msgpack\\_packer.pyx", line 177, in msgpack._cmsgpack.Packer._pack OverflowError: int too big to convert During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 630, in save fserialize(stream, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack File "msgpack\\_packer.pyx", line 184, in msgpack._cmsgpack.Packer._pack File "stringsource", line 67, in cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext RuntimeError: Can't convert object of type: <class 'int'> RuntimeError: Can't convert object of type: File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext See log for complete Python traceback. Traceback (most recent call last): File "msgpack\\_packer.pyx", line 177, in msgpack._cmsgpack.Packer._pack OverflowError: int too big to convert During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\save_command\dialog.py", line 116, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog _dlg.display(session, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\save_command\dialog.py", line 51, in display run(session, cmd) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\save_command\cmd.py", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2897, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\save_command\cmd.py", line 90, in provider_save saver_info.save(session, path, **provider_kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core_formats\\__init__.py", line 84, in save return cxs_save(session, path, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 899, in save session.save(output, version=version, include_maps=include_maps) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 630, in save fserialize(stream, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File "msgpack\\_packer.pyx", line 294, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 300, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 297, in msgpack._cmsgpack.Packer.pack File "msgpack\\_packer.pyx", line 231, in msgpack._cmsgpack.Packer._pack File "msgpack\\_packer.pyx", line 184, in msgpack._cmsgpack.Packer._pack File "stringsource", line 67, in cfunc.to_py.__Pyx_CFunc_object____object___to_py.wrap File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext RuntimeError: Can't convert object of type: <class 'int'> RuntimeError: Can't convert object of type: File "src\\_serialize.pyx", line 251, in chimerax.core._serialize._encode_ext See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 475.14 OpenGL renderer: NVIDIA GeForce GT 730/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: zh_CN.cp936 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: LENOVO Model: 90L0CTO1WW OS: Microsoft Windows 10 专业版 (Build 19045) Memory: 17,106,743,296 MaxProcessMemory: 137,438,953,344 CPU: 12 AMD Ryzen 5 3600 6-Core Processor OSLanguage: zh-CN Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2022.9.24 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pywin32: 303 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 WMI: 1.5.1 zipp: 3.11.0
Change History (2)
comment:1 by , 5 months ago
Component: | Unassigned → Sessions |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Session restore: OverflowError: int too big to convert |
comment:2 by , 5 months ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
Need data to reproduce.
Note:
See TracTickets
for help on using tickets.
Version 1.5 -- I don't know if a newer version would help or not.