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Opened 5 months ago
Closed 5 months ago
#17802 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000000327c83000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000326c77000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000325c6b000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000324c5f000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000323c53000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000322c47000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000321c3b000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003156db000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003146cf000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003136c3000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x00000003126b7000 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001eeab1f00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, PIL._imagingmath, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.pdb._pdbio (total: 53)
{"app_name":"ChimeraX","timestamp":"2025-05-26 09:28:11.00 +0200","app_version":"1.8.0","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.5 (24F74)","roots_installed":0,"name":"ChimeraX","incident_id":"A3653F9B-FA14-4054-B75C-7B146E2F90C9"}
{
"uptime" : 38000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,12",
"coalitionID" : 5553,
"osVersion" : {
"train" : "macOS 15.5",
"build" : "24F74",
"releaseType" : "User"
},
"captureTime" : "2025-05-26 09:27:14.5724 +0200",
"codeSigningMonitor" : 1,
"incident" : "A3653F9B-FA14-4054-B75C-7B146E2F90C9",
"pid" : 11883,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-05-24 19:04:24.2787 +0200",
"procStartAbsTime" : 367442282412,
"procExitAbsTime" : 934701618329,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"572B993E-4BE8-5037-A611-7CFB08EE6EE6","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "ADFF6E58-21A0-02EC-166E-C01F3CAFB579",
"appleIntelligenceStatus" : {"state":"available"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "D2C9F152-46D3-49AE-821D-C6F605F0887F",
"wakeTime" : 3,
"sleepWakeUUID" : "0485BFE5-DED4-4F55-81DD-DF53C8CC5785",
"sip" : "enabled",
"vmRegionInfo" : "0x6b533bf2cf28 is not in any region. \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000001, 0x0000eb533bf2cf28","rawCodes":[1,258742720581416],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000eb533bf2cf28 -> 0x00006b533bf2cf28 (possible pointer authentication failure)"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":11883},
"vmregioninfo" : "0x6b533bf2cf28 is not in any region. \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n UNUSED SPACE AT END",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/ivavo639/Downloads/cryosparc_P462_J16_class_00_final_volume.mrc
Opened cryosparc_P462_J16_class_00_final_volume.mrc as #1, grid size
128,128,128, pixel 1.9, shown at level 0.425, step 1, values float32
> volume #1 level 0.373
> volume #1 level 0.3345
> ui tool show "Side View"
> volume #1 level 0.3964
> open /Users/ivavo639/Downloads/cryosparc_P462_J18_006_volume_map.mrc
Opened cryosparc_P462_J18_006_volume_map.mrc as #2, grid size 256,256,256,
pixel 1.43, shown at level 0.19, step 1, values float32
> volume #2 level 0.5009
> volume #2 level 0.2961
> volume #2 level 0.561
> volume #2 level 0.4026
> open /Users/ivavo639/Downloads/cryosparc_P462_J19_004_volume_map.mrc
Opened cryosparc_P462_J19_004_volume_map.mrc as #3, grid size 256,256,256,
pixel 1.43, shown at level 0.117, step 1, values float32
> open /Users/ivavo639/Downloads/cryosparc_P462_J19_004_volume_map_sharp.mrc
Opened cryosparc_P462_J19_004_volume_map_sharp.mrc as #4, grid size
256,256,256, pixel 1.43, shown at level 0.415, step 1, values float32
> close #2
> close #1
> show #!4 models
> select add #4
4 models selected
> select subtract #4
Nothing selected
> ui tool show "Model Panel"
> view #4 clip false
> hide #!4 models
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> show #!4 models
> select add #3
2 models selected
> view matrix models #3,1,0,0,34.276,0,1,0,75.363,0,0,1,18.972
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,71.765,0,1,0,162.98,0,0,1,28.784
> ui mousemode right translate
> ui tool show "Volume Viewer"
> volume #3 level 0.7817
> volume #4 level 1.37
> volume #4 level 1.106
> view sel
> select add #4
5 models selected
> select subtract #3
3 models selected
> view sel
> select subtract #4
Nothing selected
> save /Users/ivavo639/Desktop/image1.png supersample 3
> volume #3 level 0.6575
> save /Users/ivavo639/Desktop/image2.png supersample 3
> open /Users/ivavo639/Downloads/cryosparc_P462_J18_006_volume_map.mrc format
> mrc
Opened cryosparc_P462_J18_006_volume_map.mrc as #1, grid size 256,256,256,
pixel 1.43, shown at level 0.19, step 1, values float32
> volume #1 level 0.3949
> center
Unknown command: center
> centre
Unknown command: centre
> center cryosparc_P462_J18_006_volume_map_mrc
Unknown command: center cryosparc_P462_J18_006_volume_map_mrc
> save /Users/ivavo639/Desktop/image3.png supersample 3
> open /Users/ivavo639/Downloads/cryosparc_P462_J16_class_00_final_volume.mrc
> format mrc
Opened cryosparc_P462_J16_class_00_final_volume.mrc as #2, grid size
128,128,128, pixel 1.9, shown at level 0.425, step 1, values float32
> volume #2 level 0.4111
> save /Users/ivavo639/Desktop/image4.png supersample 3
> ui tool show "Map Coordinates"
> close #3
> volume #2 level 0.4059
> volume #4 level 1.027
> save /Users/ivavo639/Desktop/image5.png supersample 3
> open 7a6a fromDatabase pdb format mmcif
Summary of feedback from opening 7a6a fetched from pdb
---
notes | Fetching compressed mmCIF 7a6a from http://files.rcsb.org/download/7a6a.cif
Fetching CCD NA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/NA/NA.cif
7a6a title:
1.15 A structure of human apoferritin obtained from Titan Mono- BCOR
microscope [more info...]
Chain information for 7a6a #3
---
Chain | Description | UniProt
1 2 4 6 A B E F G H I K M O P Q S U W X Y a e r | Ferritin heavy chain | FRIH_HUMAN 0-182
Non-standard residues in 7a6a #3
---
CSX — S-oxy cysteine
NA — sodium ion
2928 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> select add #3
38685 atoms, 34728 bonds, 128 pseudobonds, 8805 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,-111.09,0,1,0,-118.46,0,0,1,-97.854
> view matrix models #3,1,0,0,-125.18,0,1,0,-121.5,0,0,1,-106.42
> view matrix models #3,1,0,0,-125.76,0,1,0,-114.03,0,0,1,-117.78
> view matrix models #3,1,0,0,-120.7,0,1,0,-120.9,0,0,1,-120.26
> view matrix models #3,1,0,0,-119.11,0,1,0,-118.37,0,0,1,-117.48
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.22458,-0.72312,0.6532,-19.296,0.93216,-0.035915,-0.36025,-63.586,0.28397,0.68979,0.666,-193.03
> view matrix models
> #3,-0.3056,0.85689,0.41515,-115.15,0.68738,-0.10316,0.71893,-154.17,0.65888,0.50507,-0.55748,-71.019
> view matrix models
> #3,0.4436,0.66806,0.59742,-202.84,0.88822,-0.23884,-0.39244,-30.636,-0.11949,0.70473,-0.69934,14.064
> view matrix models
> #3,0.45902,0.33873,0.82132,-192.21,0.86933,-0.3619,-0.3366,-20.468,0.18322,0.8685,-0.46059,-69.207
> view matrix models
> #3,0.35187,0.25155,0.90162,-178.75,0.93358,-0.024349,-0.35755,-65.439,-0.067986,0.96754,-0.24341,-76.883
> ui tool show "Fit in Map"
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2846, steps = 52
shifted from previous position = 1.1
rotated from previous position = 1.1 degrees
atoms outside contour = 32516, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.34697531 0.26907868 0.89844577 -179.10085800
0.93450316 -0.01804092 -0.35549736 -67.28003870
-0.07944797 0.96294921 -0.25771463 -73.01404093
Axis 0.74435456 0.55208886 0.37567829
Axis point 0.00000000 32.23996227 25.74031017
Rotation angle (degrees) 117.67075879
Shift along axis -197.88889061
> view matrix models
> #3,-0.49739,0.76899,0.40157,-79.755,0.57978,0.63899,-0.50552,-85.261,-0.64533,-0.018624,-0.76367,169.45
> view matrix models
> #3,-0.93862,-0.019428,-0.3444,153.52,0.018567,0.99412,-0.10668,-108.02,0.34445,-0.10653,-0.93274,82.919
> ui mousemode right translate
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3447, steps = 92
shifted from previous position = 1.95
rotated from previous position = 7.89 degrees
atoms outside contour = 31586, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.96434137 -0.00018125 -0.26466148 145.85689349
-0.00015478 0.99999998 -0.00012088 -117.41634281
0.26466150 -0.00007560 -0.96434137 83.34204308
Axis 0.00008553 -1.00000000 0.00005001
Axis point 67.30936176 0.00000000 51.49327297
Rotation angle (degrees) 164.65316042
Shift along axis 117.43298549
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3448, steps = 44
shifted from previous position = 0.0234
rotated from previous position = 0.0165 degrees
atoms outside contour = 31585, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.96436468 0.00006820 -0.26457656 145.81913374
0.00011534 0.99999998 -0.00016263 -117.42006990
0.26457654 -0.00018735 -0.96436467 83.37079383
Axis -0.00004672 -0.99999999 0.00008908
Axis point 67.29848720 0.00000000 51.50058751
Rotation angle (degrees) 164.65820721
Shift along axis 117.42068358
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.034394,0.26264,-0.96428,87.623,0.99937,0.017823,-0.030791,-115.82,0.0090991,-0.96473,-0.26309,144.62
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3447, steps = 52
shifted from previous position = 0.153
rotated from previous position = 2.04 degrees
atoms outside contour = 31598, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.00001154 0.26453508 -0.96437606 83.35234254
0.99999998 -0.00020075 -0.00004310 -117.24687298
-0.00020500 -0.96437604 -0.26453508 145.84526250
Axis -0.62241297 -0.62230849 0.47469383
Axis point 0.00000000 -61.03572782 127.97921978
Rotation angle (degrees) 129.22461294
Shift along axis 90.31599147
> view matrix models
> #3,-0.0058973,0.3526,-0.93576,70.273,0.98863,-0.13854,-0.058435,-92.674,-0.15025,-0.92546,-0.34777,168.8
> view matrix models
> #3,0.84017,0.52934,-0.11793,-147.07,0.29684,-0.63086,-0.71687,124.89,-0.45387,0.56729,-0.68716,68.46
> view matrix models
> #3,0.99964,0.018738,0.01946,-121.83,0.026059,-0.4789,-0.87748,157.89,-0.0071228,0.87767,-0.47921,-45.495
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3085, steps = 76
shifted from previous position = 0.0928
rotated from previous position = 3.62 degrees
atoms outside contour = 32294, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.99999999 0.00001559 0.00014251 -117.34253761
0.00012922 -0.52845385 -0.84896202 163.34726123
0.00006207 0.84896203 -0.52845385 -37.13338392
Axis 1.00000000 0.00004737 0.00006692
Axis point 0.00000000 91.98688385 26.80345241
Rotation angle (degrees) 121.90104741
Shift along axis -117.33728381
> view matrix models
> #3,0.23714,-0.81181,-0.53359,131.62,-0.060877,0.53576,-0.84217,44.088,0.96957,0.2322,0.077633,-150.35
> view matrix models
> #3,0.30452,-0.80254,-0.51303,120.14,-0.10001,0.5087,-0.85512,53.433,0.94724,0.31171,0.074653,-156.75
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2867, steps = 80
shifted from previous position = 0.919
rotated from previous position = 0.515 degrees
atoms outside contour = 32555, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.30798630 -0.80159692 -0.51243226 118.71463833
-0.09211532 0.51095857 -0.85465555 52.44186924
0.94692091 0.31042506 0.08352888 -157.32379359
Axis 0.58323414 -0.73054566 0.35516331
Axis point 177.06222128 0.00000000 20.95088240
Rotation angle (degrees) 92.79502971
Shift along axis -24.94838988
> view matrix models
> #3,0.085142,0.25521,-0.96313,73.46,-0.099465,0.96399,0.24664,-130.22,0.99139,0.074798,0.10746,-137.58
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.299, steps = 52
shifted from previous position = 1.42
rotated from previous position = 1.36 degrees
atoms outside contour = 32271, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.09471071 0.25028581 -0.96352836 74.17490298
-0.11982347 0.96370851 0.23855448 -127.48452321
0.98826728 0.09285965 0.12126364 -141.28250911
Axis -0.07314320 -0.97986029 -0.18580603
Axis point 105.61392303 0.00000000 -11.18405837
Rotation angle (degrees) 84.84551523
Shift along axis 145.74277425
> view matrix models
> #3,-0.3008,0.90944,0.28712,-104.63,0.95115,0.30803,0.020776,-150.81,-0.069547,0.27934,-0.95767,89.003
> ui mousemode right rotate
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 68
shifted from previous position = 1.3
rotated from previous position = 2.18 degrees
atoms outside contour = 32394, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28539542 0.90797419 0.30680992 -108.65733855
0.95287985 0.30315602 -0.01078942 -147.50799812
-0.10280779 0.28927374 -0.95170965 90.02451015
Axis 0.58865219 0.80357203 0.08809418
Axis point 8.19750565 0.00000000 53.57344975
Rotation angle (degrees) 165.23393714
Shift along axis -174.56404726
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 44
shifted from previous position = 0.0269
rotated from previous position = 0.0146 degrees
atoms outside contour = 32423, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28555160 0.90796269 0.30669862 -108.63045428
0.95281949 0.30334165 -0.01090243 -147.49283203
-0.10293346 0.28911522 -0.95174424 90.04192977
Axis 0.58858547 0.80363104 0.08800171
Axis point 8.19430528 -0.00000000 53.57190477
Rotation angle (degrees) 165.23451613
Shift along axis -174.54428097
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 48
shifted from previous position = 0.00759
rotated from previous position = 0.0191 degrees
atoms outside contour = 32426, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28578570 0.90796782 0.30646530 -108.58037632
0.95275319 0.30355098 -0.01087003 -147.51082158
-0.10289749 0.28887929 -0.95181976 90.06899932
Axis 0.58849852 0.80370287 0.08792723
Axis point 8.20687047 -0.00000000 53.57609926
Rotation angle (degrees) 165.24579216
Shift along axis -174.53474309
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 44
shifted from previous position = 0.00429
rotated from previous position = 0.00825 degrees
atoms outside contour = 32426, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28568172 0.90797187 0.30655023 -108.60286192
0.95278694 0.30344572 -0.01085096 -147.50775922
-0.10287372 0.28897714 -0.95179263 90.05435467
Axis 0.58853978 0.80366813 0.08796859
Axis point 8.20214245 0.00000000 53.57373503
Rotation angle (degrees) 165.24288512
Shift along axis -174.54243434
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 44
shifted from previous position = 0.0213
rotated from previous position = 0.0217 degrees
atoms outside contour = 32401, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28541078 0.90797810 0.30678407 -108.65651544
0.95287336 0.30317568 -0.01081069 -147.50267779
-0.10282534 0.28924087 -0.95171775 90.02503483
Axis 0.58864609 0.80357846 0.08807626
Axis point 8.19442954 0.00000000 53.57185131
Rotation angle (degrees) 165.23436394
Shift along axis -174.56113998
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 40
shifted from previous position = 0.0066
rotated from previous position = 0.00318 degrees
atoms outside contour = 32389, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28538480 0.90797474 0.30681818 -108.66062652
0.95288362 0.30314435 -0.01078459 -147.50682861
-0.10280234 0.28928425 -0.95170705 90.02084895
Axis 0.58865656 0.80356825 0.08809948
Axis point 8.19601437 0.00000000 53.57225548
Rotation angle (degrees) 165.23376273
Shift along axis -174.56480491
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 60
shifted from previous position = 0.0206
rotated from previous position = 0.0224 degrees
atoms outside contour = 32428, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28564852 0.90797520 0.30657130 -108.60681782
0.95279745 0.30341277 -0.01084928 -147.50855599
-0.10286853 0.28900127 -0.95178587 90.05604072
Axis 0.58855313 0.80365731 0.08797809
Axis point 8.20326345 0.00000000 53.57567919
Rotation angle (degrees) 165.24209703
Shift along axis -174.54425302
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 40
shifted from previous position = 0.0182
rotated from previous position = 0.0138 degrees
atoms outside contour = 32406, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28548753 0.90797124 0.30673294 -108.63708139
0.95284833 0.30325393 -0.01082220 -147.50836578
-0.10284422 0.28918036 -0.95173409 90.03969849
Axis 0.58861504 0.80360405 0.08805034
Axis point 8.20119680 0.00000000 53.57591693
Rotation angle (degrees) 165.23603382
Shift along axis -174.55571388
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 60
shifted from previous position = 0.02
rotated from previous position = 0.0119 degrees
atoms outside contour = 32416, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28553902 0.90794621 0.30675911 -108.63735596
0.95281170 0.30336284 -0.01099307 -147.48515715
-0.10304043 0.28914471 -0.95172370 90.05076991
Axis 0.58858324 0.80363470 0.08798318
Axis point 8.19155211 0.00000000 53.57499596
Rotation angle (degrees) 165.22841162
Shift along axis -174.54336355
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 28
shifted from previous position = 0.0272
rotated from previous position = 0.0107 degrees
atoms outside contour = 32403, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28553843 0.90798813 0.30663555 -108.61870794
0.95282973 0.30331068 -0.01086955 -147.50961044
-0.10287526 0.28906779 -0.95176494 90.06680175
Axis 0.58859659 0.80362340 0.08799708
Axis point 8.20739383 0.00000000 53.58344081
Rotation angle (degrees) 165.23884356
Shift along axis -174.54915985
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2921, steps = 44
shifted from previous position = 0.0275
rotated from previous position = 0.00934 degrees
atoms outside contour = 32417, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28550839 0.90795192 0.30677071 -108.64291566
0.95282630 0.30331859 -0.01094888 -147.48670486
-0.10299032 0.28917320 -0.95172047 90.04086214
Axis 0.58859793 0.80362129 0.08800741
Axis point 8.19061358 0.00000000 53.57256207
Rotation angle (degrees) 165.22957910
Shift along axis -174.54618789
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 28
shifted from previous position = 0.0206
rotated from previous position = 0.0163 degrees
atoms outside contour = 32407, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28566870 0.90797552 0.30655155 -108.59899059
0.95279403 0.30342438 -0.01082520 -147.52477725
-0.10284423 0.28898806 -0.95179250 90.06818495
Axis 0.58854656 0.80366184 0.08798070
Axis point 8.21223300 -0.00000000 53.58190095
Rotation angle (degrees) 165.24380571
Shift along axis -174.55133360
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 44
shifted from previous position = 0.00609
rotated from previous position = 0.0107 degrees
atoms outside contour = 32414, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28559557 0.90799802 0.30655303 -108.61075293
0.95283344 0.30330554 -0.01068599 -147.53566205
-0.10268209 0.28904210 -0.95179360 90.04752085
Axis 0.58858475 0.80362687 0.08804460
Axis point 8.21280848 0.00000000 53.57813450
Rotation angle (degrees) 165.24907160
Shift along axis -174.56205619
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 60
shifted from previous position = 0.00723
rotated from previous position = 0.0172 degrees
atoms outside contour = 32400, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28541856 0.90797596 0.30678314 -108.65410318
0.95287142 0.30318198 -0.01080490 -147.50589115
-0.10282171 0.28924097 -0.95171811 90.02759865
Axis 0.58864299 0.80358056 0.08807785
Axis point 8.19647888 0.00000000 53.57323909
Rotation angle (degrees) 165.23457120
Shift along axis -174.56190555
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 48
shifted from previous position = 0.000558
rotated from previous position = 0.00271 degrees
atoms outside contour = 32399, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28545921 0.90796835 0.30676786 -108.64643454
0.95285797 0.30322411 -0.01080884 -147.50858079
-0.10283349 0.28922071 -0.95172299 90.03243782
Axis 0.58862592 0.80359408 0.08806864
Axis point 8.19870412 0.00000000 53.57451232
Rotation angle (degrees) 165.23495449
Shift along axis -174.56009452
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 40
shifted from previous position = 0.00712
rotated from previous position = 0.00183 degrees
atoms outside contour = 32394, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28543405 0.90797095 0.30678356 -108.64618984
0.95286617 0.30319846 -0.01080548 -147.50975817
-0.10282736 0.28923942 -0.95171797 90.03260738
Axis 0.58863614 0.80358571 0.08807664
Axis point 8.20127008 0.00000000 53.57534061
Rotation angle (degrees) 165.23444430
Shift along axis -174.56003819
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.292, steps = 60
shifted from previous position = 0.0108
rotated from previous position = 0.00493 degrees
atoms outside contour = 32399, contour level = 1.0271
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.28549471 0.90796925 0.30673216 -108.63913347
0.95284630 0.30326040 -0.01081902 -147.50803517
-0.10284306 0.28917983 -0.95173438 90.03638326
Axis 0.58861208 0.80360615 0.08805093
Axis point 8.19929935 -0.00000000 53.57442062
Rotation angle (degrees) 165.23614457
Shift along axis -174.55688390
> volume #4 level 0.6203
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.037011,0.99871,-0.03484,-117.1,0.95715,-0.025408,0.28846,-144.55,0.28721,-0.044024,-0.95686,83.928
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3447, steps = 60
shifted from previous position = 1.65
rotated from previous position = 3.22 degrees
atoms outside contour = 27303, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.00002228 0.99999996 -0.00026965 -117.42618837
0.96432168 0.00009287 0.26473324 -144.42501953
0.26473325 -0.00025414 -0.96432165 83.35640079
Axis -0.70390330 -0.70394455 -0.09477455
Axis point 6.74498714 0.00000000 51.85632991
Rotation angle (degrees) 169.15066128
Shift along axis 176.42382153
> view matrix models
> #3,0.9259,0.36874,0.082098,-161.95,0.26488,-0.78865,0.55486,-2.9592,0.26934,-0.492,-0.82788,124.77
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2793, steps = 60
shifted from previous position = 1.21
rotated from previous position = 2.8 degrees
atoms outside contour = 28882, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.90882826 0.40172656 0.11245879 -168.21201322
0.27468767 -0.77915570 0.56343862 -5.70680173
0.31397116 -0.48117789 -0.81846805 117.83967245
Axis -0.97497091 -0.18807735 -0.11856908
Axis point 0.00000000 33.59280801 65.76508169
Rotation angle (degrees) 147.60746703
Shift along axis 151.10299868
> view matrix models
> #3,0.9409,-0.33868,-0.0013345,-71.137,-0.23711,-0.66151,0.71147,23.356,-0.24184,-0.6691,-0.70272,191.99
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2778, steps = 88
shifted from previous position = 1.07
rotated from previous position = 2.98 degrees
atoms outside contour = 28961, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.92808317 -0.37024560 -0.03974703 -60.38365680
-0.23632945 -0.66813810 0.70550681 24.67857675
-0.28776730 -0.64537561 -0.70758767 194.74668224
Axis -0.97891806 0.17972809 0.09704244
Axis point 0.00000000 44.97506202 92.36435372
Rotation angle (degrees) 136.37088211
Shift along axis 82.44477970
> view matrix models
> #3,0.84088,0.25159,-0.47919,-71.624,0.061475,-0.92405,-0.37729,147.59,-0.53772,0.2878,-0.79248,124.1
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2731, steps = 76
shifted from previous position = 1.84
rotated from previous position = 3.1 degrees
atoms outside contour = 29115, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.85047981 0.28108977 -0.44460391 -79.80695663
0.08066145 -0.90493837 -0.41782804 149.58610292
-0.51978633 0.31949192 -0.79230492 117.89756008
Axis 0.96034464 0.09792361 -0.26105391
Axis point 0.00000000 69.12727373 64.58986126
Rotation angle (degrees) 157.42558701
Shift along axis -92.77179086
> view matrix models
> #3,-0.030378,0.99874,0.039997,-117.75,-0.74474,0.0040732,-0.66735,169.18,-0.66667,-0.05006,0.74367,-2.4874
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.030378,0.99874,0.039997,-116.25,-0.74474,0.0040732,-0.66735,168.21,-0.66667,-0.05006,0.74367,-3.0155
> view matrix models
> #3,-0.030378,0.99874,0.039997,-115.91,-0.74474,0.0040732,-0.66735,167.78,-0.66667,-0.05006,0.74367,-2.4523
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 60
shifted from previous position = 2.59
rotated from previous position = 4.25 degrees
atoms outside contour = 28488, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.00003011 1.00000000 -0.00004023 -117.37144723
-0.70723655 -0.00004974 -0.70697699 167.70929188
-0.70697699 0.00000717 0.70723655 0.68418308
Axis 0.35734343 0.35731947 -0.86291858
Axis point 22.19929373 145.78685742 0.00000000
Rotation angle (degrees) 98.41961243
Shift along axis 17.39348584
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 28
shifted from previous position = 0.0248
rotated from previous position = 0.0247 degrees
atoms outside contour = 28493, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.00013013 0.99999999 -0.00008030 -117.33017514
-0.70694171 -0.00014879 -0.70727180 167.72077497
-0.70727180 -0.00003527 0.70694172 0.75700651
Axis 0.35748421 0.35746145 -0.86280145
Axis point 22.23672182 145.77460313 0.00000000
Rotation angle (degrees) 98.43391628
Shift along axis 17.35688046
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 40
shifted from previous position = 0.00177
rotated from previous position = 0.0112 degrees
atoms outside contour = 28492, contour level = 0.6203
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.00002494 1.00000000 -0.00002846 -117.34833213
-0.70705304 -0.00003776 -0.70716052 167.70609726
-0.70716052 0.00000248 0.70705304 0.72697607
Axis 0.35743827 0.35742264 -0.86283657
Axis point 22.22229579 145.77985241 0.00000000
Rotation angle (degrees) 98.42443024
Shift along axis 17.36990850
> volume #4 level 0.8576
> volume #4 level 1.117
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 28
shifted from previous position = 0.0341
rotated from previous position = 0.0181 degrees
atoms outside contour = 32723, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.00003635 1.00000000 0.00002444 -117.39553171
-0.70726947 0.00004298 -0.70694406 167.69838570
-0.70694406 0.00000841 0.70726947 0.68025121
Axis 0.35732228 0.35733038 -0.86292282
Axis point 22.18926678 145.79735661 0.00000000
Rotation angle (degrees) 98.41404933
Shift along axis 17.38868486
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 44
shifted from previous position = 0.0349
rotated from previous position = 0.0239 degrees
atoms outside contour = 32732, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.00002177 1.00000000 -0.00004663 -117.34583643
-0.70698203 -0.00004837 -0.70723152 167.70714803
-0.70723152 0.00001757 0.70698202 0.74197998
Axis 0.35748389 0.35745144 -0.86280574
Axis point 22.22877579 145.78020563 0.00000000
Rotation angle (degrees) 98.42670258
Shift along axis 17.35773122
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3, steps = 28
shifted from previous position = 0.0295
rotated from previous position = 0.0333 degrees
atoms outside contour = 32725, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.00001119 1.00000000 0.00001188 -117.38600076
-0.70739055 0.00001631 -0.70682291 167.70074111
-0.70682291 -0.00000050 0.70739054 0.65031115
Axis 0.35725469 0.35726095 -0.86297955
Axis point 22.18242438 145.78977512 0.00000000
Rotation angle (degrees) 98.41204402
Shift along axis 17.41502149
> view matrix models
> #3,1.1187e-05,1,1.1885e-05,-113.37,-0.70739,1.6313e-05,-0.70682,146.73,-0.70682,-4.9979e-07,0.70739,49.209
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.03135, steps = 176
shifted from previous position = 11.6
rotated from previous position = 7.15 degrees
atoms outside contour = 37126, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.07123834 0.99636257 -0.04676254 -122.21338861
-0.76785559 0.02485657 -0.64014056 150.99573625
-0.63664974 0.08150943 0.76683331 18.64432364
Axis 0.36167542 0.29563875 -0.88418811
Axis point 24.93327501 140.07636034 0.00000000
Rotation angle (degrees) 93.92989790
Shift along axis -16.04647780
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.03135, steps = 48
shifted from previous position = 0.0258
rotated from previous position = 0.0147 degrees
atoms outside contour = 37133, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.07098734 0.99638246 -0.04672042 -122.17856753
-0.76787667 0.02469209 -0.64012165 150.99930429
-0.63665236 0.08131606 0.76685167 18.64947726
Axis 0.36157398 0.29566522 -0.88422075
Axis point 24.92931701 140.05186751 0.00000000
Rotation angle (degrees) 93.94130169
Shift along axis -16.02160349
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.03135, steps = 40
shifted from previous position = 0.00673
rotated from previous position = 0.00506 degrees
atoms outside contour = 37129, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.07107105 0.99637565 -0.04673842 -122.18811707
-0.76788584 0.02474648 -0.64010855 150.99748018
-0.63663196 0.08138296 0.76686150 18.64159786
Axis 0.36159910 0.29564447 -0.88421742
Axis point 24.92898611 140.05845337 0.00000000
Rotation angle (degrees) 93.93705334
Shift along axis -16.02476915
> view matrix models
> #3,0.071071,0.99638,-0.046738,-125.52,-0.76789,0.024746,-0.64011,167.98,-0.63663,0.081383,0.76686,-20.825
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.297, steps = 96
shifted from previous position = 7.46
rotated from previous position = 5.37 degrees
atoms outside contour = 33036, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.13705350 0.98803502 -0.07073289 -124.02590878
-0.80147463 0.06864554 -0.59407593 157.64621997
-0.58211232 0.13811080 0.80129311 -41.52040981
Axis 0.36609560 0.25569128 -0.89476029
Axis point 13.29950571 149.02061519 0.00000000
Rotation angle (degrees) 89.79968907
Shift along axis 32.05423809
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.297, steps = 48
shifted from previous position = 0.00599
rotated from previous position = 0.00523 degrees
atoms outside contour = 33035, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.13698982 0.98804240 -0.07075319 -124.01953672
-0.80151922 0.06859120 -0.59402205 157.65415280
-0.58206592 0.13808502 0.80133126 -41.53202398
Axis 0.36605572 0.25565789 -0.89478615
Axis point 13.29854338 149.01752201 0.00000000
Rotation angle (degrees) 89.80197716
Shift along axis 32.06974706
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.98024,-0.09091,0.17568,106.21,0.032741,-0.95045,-0.30915,145.83,0.19508,-0.29729,0.93465,-97.63
> view matrix models
> #3,-0.82349,-0.47366,0.31226,116.76,0.22603,-0.77876,-0.58519,135.33,0.52035,-0.41132,0.74836,-100.58
> view matrix models
> #3,-0.22585,0.45135,0.86329,-128.09,0.85674,-0.32978,0.39655,-108.08,0.46368,0.82917,-0.31221,-115.13
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3235, steps = 116
shifted from previous position = 0.361
rotated from previous position = 11.3 degrees
atoms outside contour = 32489, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.23475830 0.31523721 0.91951838 -117.33976631
0.91954698 -0.23467214 0.31521793 -117.34841197
0.31515376 0.91954037 -0.23478419 -117.32419490
Axis 0.57734087 0.57738116 0.57732877
Axis point 0.00240505 0.00000000 0.00781647
Rotation angle (degrees) 148.44161741
Shift along axis -203.23443886
> view matrix models
> #3,-0.53473,0.80761,0.24866,-60.845,0.82015,0.56688,-0.07746,-153.89,-0.20352,0.16252,-0.96549,119.59
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2845, steps = 68
shifted from previous position = 1.69
rotated from previous position = 0.574 degrees
atoms outside contour = 33218, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.52933731 0.81307423 0.24230626 -60.75954838
0.82459914 0.56024133 -0.07852337 -152.37685052
-0.19959531 0.15824018 -0.96701694 118.72260114
Axis 0.47214405 0.88122177 0.02298249
Axis point 19.28897725 0.00000000 60.27159421
Rotation angle (degrees) 165.47914834
Shift along axis -160.23651509
> view matrix models
> #3,0.51886,0.51963,-0.6788,-41.121,-0.15878,-0.72165,-0.67381,185.39,-0.83998,0.45739,-0.29193,79.304
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2882, steps = 100
shifted from previous position = 2.16
rotated from previous position = 5.17 degrees
atoms outside contour = 33244, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.45619216 0.55239396 -0.69767444 -34.88159396
-0.20435812 -0.69802351 -0.68629509 187.80996682
-0.86609842 0.45565788 -0.20554666 73.70006506
Axis 0.82735078 0.12202404 -0.54827076
Axis point 0.00000000 84.79336214 72.10397976
Rotation angle (degrees) 136.35989709
Shift along axis -46.34957458
> view matrix models
> #3,0.37286,-0.62821,-0.68288,112.61,-0.8933,-0.44208,-0.081073,167.48,-0.25096,0.64025,-0.72602,40.723
> view matrix models
> #3,0.093343,-0.89504,-0.43611,147.99,-0.97428,-0.17235,0.14519,118.47,-0.20511,0.41134,-0.8881,81.479
> view matrix models
> #3,0.3626,-0.88643,-0.28769,97.653,-0.75793,-0.46011,0.46242,89.447,-0.54227,0.050378,-0.83869,158.08
> view matrix models
> #3,0.41098,-0.89044,-0.19549,81.528,-0.79663,-0.45503,0.39789,101.04,-0.44325,-0.0077907,-0.89636,160.06
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3037, steps = 84
shifted from previous position = 1.22
rotated from previous position = 6.55 degrees
atoms outside contour = 33018, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.45881359 -0.88046599 -0.11945597 64.63352994
-0.76106414 -0.45880737 0.45855989 90.61162485
-0.45855367 -0.11947985 -0.88059815 172.97753192
Axis -0.84916458 0.49814871 0.17540632
Axis point 0.00000000 81.75714292 84.86487295
Rotation angle (degrees) 160.10131953
Shift along axis 20.59491209
> view matrix models
> #3,0.26763,-0.78281,-0.56177,127.9,-0.95867,-0.2748,-0.073779,155.07,-0.096621,0.55829,-0.824,43.527
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2913, steps = 80
shifted from previous position = 1.27
rotated from previous position = 1.64 degrees
atoms outside contour = 33094, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.28616711 -0.79022605 -0.54189591 125.40517393
-0.95435504 -0.28554516 -0.08758102 157.69388776
-0.08552696 0.54222390 -0.83586984 45.05030793
Axis 0.79230762 -0.57412160 -0.20647766
Axis point -0.00000000 118.40296378 59.45549727
Rotation angle (degrees) 156.58115431
Shift along axis -0.47787388
> view #3 clip false
> view matrix models
> #3,0.24196,-0.67263,-0.6993,135.33,-0.70634,-0.61623,0.34834,115.98,-0.66524,0.40966,-0.62421,104.16
> view matrix models
> #3,0.48381,-0.69138,-0.53658,89.768,-0.84162,-0.53569,-0.068621,171.68,-0.24,0.4848,-0.84105,70.683
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2902, steps = 76
shifted from previous position = 1.7
rotated from previous position = 4.2 degrees
atoms outside contour = 33198, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.51841646 -0.66956725 -0.53190608 80.89862870
-0.83398209 -0.53335632 -0.14143873 179.47786978
-0.18899273 0.51692431 -0.83490778 60.00192182
Axis 0.86591964 -0.45102078 -0.21624854
Axis point 0.00000000 104.55364473 59.34139489
Rotation angle (degrees) 157.65687048
Shift along axis -23.87186405
> view matrix models
> #3,0.35079,0.88471,-0.30697,-109.39,0.36471,-0.43099,-0.82537,106.6,-0.86251,0.17757,-0.47385,136.97
> view matrix models
> #3,0.36873,0.87367,-0.3174,-108.98,0.17093,-0.39936,-0.90072,134.65,-0.91369,0.27787,-0.2966,110.24
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2952, steps = 84
shifted from previous position = 0.544
rotated from previous position = 5.34 degrees
atoms outside contour = 33066, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.34682443 0.90312148 -0.25314899 -117.86644097
0.14504638 -0.31829911 -0.93682828 132.54015964
-0.92664685 0.28819659 -0.24138841 104.35672880
Axis 0.77032440 0.42351126 -0.47669543
Axis point 0.00000000 78.07077364 69.77576612
Rotation angle (degrees) 127.33192515
Shift along axis -84.40952041
> view matrix models
> #3,-0.18848,0.96459,0.18452,-113.59,-0.1194,0.16399,-0.97921,111.82,-0.97479,-0.20659,0.084263,130.01
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3244, steps = 68
shifted from previous position = 1.17
rotated from previous position = 4.31 degrees
atoms outside contour = 32523, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.15622731 0.96993321 0.18660815 -117.40629742
-0.18630064 0.15660047 -0.96993215 118.76479917
-0.96999233 -0.18629510 0.15623390 118.80892999
Axis 0.43211923 0.63778162 -0.63757946
Axis point -55.70671860 0.00000000 166.50910625
Rotation angle (degrees) 114.94173889
Shift along axis -50.73764608
> view matrix models
> #3,-0.68475,0.66576,-0.29645,37.956,-0.46997,-0.71429,-0.51857,201.8,-0.55699,-0.21577,0.802,-2.7289
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2732, steps = 68
shifted from previous position = 1.55
rotated from previous position = 1.64 degrees
atoms outside contour = 33442, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.68310137 0.65692033 -0.31910533 42.41935990
-0.44966153 -0.72261169 -0.52501130 199.98752326
-0.57547984 -0.21514655 0.78900882 1.33778981
Axis 0.26317745 0.21774657 -0.93985321
Axis point 54.01685105 95.23852537 0.00000000
Rotation angle (degrees) 143.93523929
Shift along axis 53.45309017
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.66511,0.33426,-0.66775,-37.512,-0.68627,0.62612,-0.37013,50.383,0.29437,0.70444,0.64584,-193.05
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.3027, steps = 60
shifted from previous position = 1.52
rotated from previous position = 3.34 degrees
atoms outside contour = 32965, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.66651455 0.33327788 -0.66684647 -38.59022408
-0.66670351 0.66671731 -0.33315833 40.04070169
0.33356378 0.66664375 0.66657431 -196.11243014
Axis 0.57719871 -0.57754982 -0.57730222
Axis point 236.04410538 0.00000000 -234.61329332
Rotation angle (degrees) 60.00641171
Shift along axis 67.81641464
> view matrix models
> #3,0.86109,-0.45486,0.22723,-74.074,0.0127,-0.42752,-0.90392,156.42,0.5083,0.78124,-0.36236,-108.78
> view matrix models
> #3,0.80928,-0.53866,0.23434,-58.901,-0.46945,-0.83286,-0.2932,189.1,0.3531,0.12727,-0.92689,53.42
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2793, steps = 64
shifted from previous position = 1.27
rotated from previous position = 3.33 degrees
atoms outside contour = 33205, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.77931739 -0.56327826 0.27455786 -56.67715275
-0.48121475 -0.81860989 -0.31354460 190.48814809
0.40136863 0.11222947 -0.90901473 48.28895445
Axis 0.94245109 -0.28069571 0.18164761
Axis point 0.00000000 82.79060001 39.49812696
Rotation angle (degrees) 166.94498347
Shift along axis -98.11307716
> view matrix models
> #3,-0.024142,-0.99409,-0.10581,133.98,-0.92465,0.062441,-0.37566,146.15,0.38004,0.088773,-0.9207,54.956
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2949, steps = 60
shifted from previous position = 1.32
rotated from previous position = 2.68 degrees
atoms outside contour = 33181, contour level = 1.1175
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.01989966 -0.99366744 -0.11058489 128.85658268
-0.93031134 0.02211267 -0.36610359 151.62904284
0.36623055 0.11016371 -0.92398006 54.87005756
Axis 0.70359770 -0.70440746 0.09359703
Axis point 133.23676822 0.00000000 54.41631890
Rotation angle (degrees) 160.21744478
Shift along axis -11.00975935
> view matrix models
> #3,-0.21221,-0.97223,-0.098681,152.33,-0.96719,0.22339,-0.12099,103.28,0.13967,0.069769,-0.98774,93.92
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.21221,-0.97223,-0.098681,213.24,-0.96719,0.22339,-0.12099,82.932,0.13967,0.069769,-0.98774,162.69
> select add #4
38685 atoms, 34728 bonds, 128 pseudobonds, 8805 residues, 4 models selected
> view matrix models
> #4,1,0,0,-5.246,0,1,0,1.365,0,0,1,-5.802,#3,-0.21221,-0.97223,-0.098681,208,-0.96719,0.22339,-0.12099,84.297,0.13967,0.069769,-0.98774,156.88
> select subtract #3
2 models selected
> view matrix models #4,1,0,0,-21.632,0,1,0,-0.31027,0,0,1,-22.084
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.21848,-0.18204,0.95871,-21.628,-0.91102,0.31406,0.26724,0.63915,-0.34974,-0.93179,-0.097223,-20.385
> view matrix models
> #4,-0.69436,-0.104,0.71208,-20.856,-0.65577,-0.31606,-0.68562,1.5871,0.29636,-0.94302,0.15126,-21.016
> volume #4 level 1.682
> view matrix models
> #4,0.28001,0.74043,0.61103,-22.083,-0.8133,0.52113,-0.2588,0.79711,-0.51005,-0.42448,0.74811,-21.237
> view matrix models
> #4,0.39908,-0.28372,0.87192,-21.623,0.18903,0.95595,0.22454,-0.57413,-0.89722,0.075211,0.43513,-21.094
> view matrix models
> #4,0.031896,-0.86436,-0.50186,-19.965,0.98981,-0.042402,0.13594,-0.36979,-0.13878,-0.50108,0.8542,-21.523
> view matrix models
> #4,-0.50674,-0.018246,-0.8619,-19.928,0.85998,0.059379,-0.50687,0.1092,0.060428,-0.99807,-0.014399,-20.69
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.50674,-0.018246,-0.8619,-31.483,0.85998,0.059379,-0.50687,-1.4918,0.060428,-0.99807,-0.014399,-31.689
> view matrix models
> #4,-0.50674,-0.018246,-0.8619,-31.09,0.85998,0.059379,-0.50687,2.6298,0.060428,-0.99807,-0.014399,-32.755
> view matrix models
> #4,-0.50674,-0.018246,-0.8619,-31.373,0.85998,0.059379,-0.50687,3.1925,0.060428,-0.99807,-0.014399,-32.825
> view matrix models
> #4,-0.50674,-0.018246,-0.8619,-36.642,0.85998,0.059379,-0.50687,5.6209,0.060428,-0.99807,-0.014399,-39.189
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.24362,-0.46207,-0.85272,-36.867,0.73933,-0.48058,0.47164,5.3939,-0.62773,-0.74534,0.22454,-39.049
> select add #3
38685 atoms, 34728 bonds, 128 pseudobonds, 8805 residues, 4 models selected
> select subtract #4
38685 atoms, 34728 bonds, 128 pseudobonds, 8805 residues, 2 models selected
> view matrix models
> #3,0.58669,-0.34158,-0.73425,114.24,0.33703,0.92743,-0.16214,-147.98,0.73635,-0.15234,0.65923,-81.815
> view matrix models
> #3,0.85054,-0.34485,0.39706,-50.106,-0.010534,0.74368,0.66846,-183.32,-0.5258,-0.57273,0.6289,120.44
> view matrix models
> #3,-0.26019,0.86516,-0.42872,35.679,-0.5693,0.22116,0.79182,-70.206,0.77987,0.45009,0.43499,-131.61
> view matrix models
> #3,0.90771,0.29074,-0.30253,-49.3,0.3365,-0.073715,0.93879,-159.7,0.25064,-0.95396,-0.16475,167.48
> view matrix models
> #3,-0.41195,-0.89195,0.18633,188.45,0.26298,0.07941,0.96153,-171.78,-0.87243,0.4451,0.20185,91.612
> view matrix models
> #3,0.060078,-0.59251,-0.80332,214.21,0.38791,-0.72766,0.56572,-44.501,-0.91974,-0.3456,0.18613,192.42
> view matrix models
> #3,-0.96557,-0.24865,-0.076493,208.9,0.25832,-0.88156,-0.39512,102.43,0.030816,-0.40128,0.91544,0.63602
> view matrix models
> #3,-0.96389,-0.2521,-0.085816,210.21,0.26477,-0.87263,-0.41039,102.41,0.028573,-0.41829,0.90786,3.8046
> view matrix models
> #3,-0.91568,-0.28025,-0.28809,231.72,0.40176,-0.6184,-0.6754,87.511,0.011125,-0.73419,0.67885,70.207
> view matrix models
> #3,-0.22391,0.92659,-0.30214,9.1953,0.011624,-0.30745,-0.95149,129.46,-0.97454,-0.21656,0.05807,198.77
> view matrix models
> #3,-0.32933,0.91524,0.2321,-40.097,-0.86889,-0.19756,-0.45387,161.7,-0.36955,-0.35114,0.86031,48.502
> view matrix models
> #3,-0.43039,0.88915,0.15547,-16.036,-0.84207,-0.33347,-0.42392,171.05,-0.32509,-0.31337,0.89225,35.019
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.43039,0.88915,0.15547,-60.981,-0.84207,-0.33347,-0.42392,170.39,-0.32509,-0.31337,0.89225,-72.68
> view matrix models
> #3,-0.43039,0.88915,0.15547,-65.058,-0.84207,-0.33347,-0.42392,170.6,-0.32509,-0.31337,0.89225,-82.713
> ui mousemode right translate
> ui mousemode right rotate
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.43039,0.88915,0.15547,-112.58,-0.84207,-0.33347,-0.42392,193.69,-0.32509,-0.31337,0.89225,-72.483
> ui mousemode right rotate
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2997, steps = 100
shifted from previous position = 3.38
rotated from previous position = 4.56 degrees
atoms outside contour = 36528, contour level = 1.6825
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51360048 0.10006770 -0.85217428 149.55196307
0.85198833 -0.05817071 -0.52031918 -31.07186909
-0.10163873 -0.99327873 -0.05538001 136.47369345
Axis -0.40670058 -0.64538975 0.64658078
Axis point 117.80469701 94.44053984 0.00000000
Rotation angle (degrees) 144.44676286
Shift along axis 47.47186410
> volume #4 level 0.5751
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2998, steps = 104
shifted from previous position = 0.00736
rotated from previous position = 0.0177 degrees
atoms outside contour = 27831, contour level = 0.5751
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51352489 0.09995655 -0.85223288 149.56376358
0.85206789 -0.05791159 -0.52021780 -31.12427516
-0.10135334 -0.99330506 -0.05543072 136.44177954
Axis -0.40667148 -0.64546505 0.64652392
Axis point 117.81225854 94.43693214 0.00000000
Rotation angle (degrees) 144.43277296
Shift along axis 47.47918965
> volume #4 level 0.5073
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2997, steps = 100
shifted from previous position = 0.0189
rotated from previous position = 0.0244 degrees
atoms outside contour = 26977, contour level = 0.50731
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51372281 0.09997024 -0.85211198 149.56566350
0.85191241 -0.05824218 -0.52043550 -31.04275823
-0.10165692 -0.99328435 -0.05524555 136.47126872
Axis -0.40663443 -0.64536662 0.64664548
Axis point 117.79381438 94.43858689 0.00000000
Rotation angle (degrees) 144.44968662
Shift along axis 47.46394019
> volume #4 level 0.6768
> volume flip #4
Opened cryosparc_P462_J19_004_volume_map_sharp.mrc z flip as #5, grid size
256,256,256, pixel 1.43, shown at step 1, values float32
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2998, steps = 56
shifted from previous position = 0.0225
rotated from previous position = 0.0233 degrees
atoms outside contour = 29055, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51348420 0.09984300 -0.85227071 149.57682048
0.85208933 -0.05801421 -0.52017125 -31.12131349
-0.10137927 -0.99331049 -0.05528577 136.42450899
Axis -0.40667558 -0.64541087 0.64657543
Axis point 117.81246537 94.42236117 0.00000000
Rotation angle (degrees) 144.42868417
Shift along axis 47.46552988
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2997, steps = 84
shifted from previous position = 0.0262
rotated from previous position = 0.0217 degrees
atoms outside contour = 29060, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51376309 0.09988856 -0.85209728 149.57580929
0.85190091 -0.05816394 -0.52046306 -31.04584081
-0.10154964 -0.99329715 -0.05521267 136.45931715
Axis -0.40658708 -0.64539121 0.64665071
Axis point 117.79047963 94.43899988 0.00000000
Rotation angle (degrees) 144.44619616
Shift along axis 47.46263547
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2998, steps = 84
shifted from previous position = 0.0227
rotated from previous position = 0.015 degrees
atoms outside contour = 29043, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.51362402 0.09992017 -0.85217741 149.57252742
0.85200304 -0.05797628 -0.52031680 -31.09472019
-0.10139622 -0.99330495 -0.05535428 136.43750993
Axis -0.40662899 -0.64544830 0.64656736
Axis point 117.80295932 94.43530932 0.00000000
Rotation angle (degrees) 144.43707669
Shift along axis 47.46554971
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.75206,0.39954,0.52418,-58.223,-0.60931,-0.72467,-0.32185,200.7,0.25127,-0.56144,0.78844,-96.355
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2889, steps = 76
shifted from previous position = 1.35
rotated from previous position = 3.55 degrees
atoms outside contour = 29388, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.81247832 -0.13013873 -0.56828066 179.54258201
0.40877639 0.56783392 -0.71446939 -30.42012621
0.41566917 -0.81279060 -0.40815510 96.23905150
Axis -0.08730601 -0.87371514 0.47853893
Axis point 79.12040634 0.00000000 72.34329359
Rotation angle (degrees) 145.73066196
Shift along axis 56.95751227
> view matrix models
> #3,-0.90765,-0.24815,0.33851,58.685,-0.31568,-0.1279,-0.94021,169.92,0.27661,-0.96024,0.037756,36.361
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2715, steps = 92
shifted from previous position = 2.52
rotated from previous position = 0.6 degrees
atoms outside contour = 29672, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.63222516 0.45142058 -0.62969105 95.61175260
0.37123793 0.88985982 0.26520162 -178.47708576
0.68005423 -0.06609807 -0.73017621 13.03688059
Axis -0.24479535 -0.96776293 -0.05924648
Axis point 65.98151889 0.00000000 38.55601954
Rotation angle (degrees) 137.41470377
Shift along axis 148.54580602
> show sel atoms
> hide sel atoms
> show sel atoms
> show sel cartoons
> hide sel atoms
> view matrix models
> #3,-0.39995,-0.91621,0.024328,115.43,0.64539,-0.30038,-0.70232,46.354,0.65078,-0.26519,0.71145,-169.99
> view matrix models
> #3,-0.269,-0.95892,0.090037,97.25,0.96307,-0.26665,0.037403,-82.486,-0.011858,0.096773,0.99524,-167.99
> view matrix models
> #3,-0.54071,-0.37338,-0.7538,159.83,0.46699,-0.87857,0.10021,40.93,-0.69968,-0.29783,0.64941,0.65451
> view matrix models
> #3,-0.035701,0.97335,0.22654,-174.58,-0.61387,0.15752,-0.77353,149.39,-0.7886,-0.16668,0.59189,2.4602
> view matrix models
> #3,-0.0027605,0.648,0.76164,-203.24,-0.21109,0.7441,-0.63384,16.068,-0.97746,-0.16252,0.13473,78.251
> view matrix models
> #3,-0.41628,0.80809,0.41679,-132.59,0.097691,0.49549,-0.8631,36.035,-0.90397,-0.31858,-0.2852,137.59
> ui tool show "Fit in Map"
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2857, steps = 76
shifted from previous position = 1.92
rotated from previous position = 2.99 degrees
atoms outside contour = 29359, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.49871396 0.79431318 -0.34691636 -111.07678519
0.83784043 -0.33923765 0.42771630 -108.99303866
0.22205360 -0.50396864 -0.83469025 132.30768119
Axis -0.85276442 -0.52077405 0.03984018
Axis point 0.00000000 1.39293111 68.32792155
Rotation angle (degrees) 146.88827749
Shift along axis 156.75423728
> view matrix models
> #3,-0.54366,0.53224,-0.64897,40.697,0.72678,-0.088199,-0.68118,10.928,-0.41979,-0.84199,-0.33887,149.37
> view matrix models
> #3,0.95156,0.075823,-0.29796,-123.41,0.30724,-0.27072,0.91231,-106.14,-0.011489,-0.95967,-0.2809,108.21
> view matrix models
> #3,0.16162,-0.9645,-0.20885,82.185,0.18323,-0.17863,0.96671,-108.79,-0.96969,-0.1945,0.14785,80.374
> view matrix models
> #3,-0.0045944,-0.86308,0.50504,5.5388,0.73076,0.34186,0.59087,-190.53,-0.68262,0.37178,0.62913,-77.22
> volume flip #4
Opened cryosparc_P462_J19_004_volume_map_sharp.mrc z flip as #6, grid size
256,256,256, pixel 1.43, shown at step 1, values float32
> volume flip #4
Opened cryosparc_P462_J19_004_volume_map_sharp.mrc z flip as #7, grid size
256,256,256, pixel 1.43, shown at step 1, values float32
> volume flip #1
Opened cryosparc_P462_J18_006_volume_map.mrc z flip as #8, grid size
256,256,256, pixel 1.43, shown at step 1, values float32
> volume flip #4
Opened cryosparc_P462_J19_004_volume_map_sharp.mrc z flip as #9, grid size
256,256,256, pixel 1.43, shown at step 1, values float32
> view matrix models
> #3,0.96293,-0.19082,-0.19065,-105.94,0.24796,0.90445,0.3471,-171.16,0.1062,-0.38151,0.91825,-115.55
> view matrix models
> #3,0.64957,-0.2291,-0.72496,-1.3258,0.52632,0.82361,0.21131,-178.45,0.54868,-0.51882,0.65557,-120.57
> view matrix models
> #3,0.20466,-0.23867,-0.94929,78.828,0.58626,0.80651,-0.076382,-149.54,0.78385,-0.5409,0.30498,-104.33
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.20466,-0.23867,-0.94929,299.55,0.58626,0.80651,-0.076382,32.588,0.78385,-0.5409,0.30498,110.89
> view matrix models
> #3,0.20466,-0.23867,-0.94929,111.69,0.58626,0.80651,-0.076382,-155.83,0.78385,-0.5409,0.30498,-133.16
> view matrix models
> #3,0.20466,-0.23867,-0.94929,84.519,0.58626,0.80651,-0.076382,-144.29,0.78385,-0.5409,0.30498,-105.77
> view matrix models
> #3,0.20466,-0.23867,-0.94929,81.812,0.58626,0.80651,-0.076382,-146.1,0.78385,-0.5409,0.30498,-108.26
> ui mousemode right translate
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2856, steps = 136
shifted from previous position = 7.08
rotated from previous position = 9.3 degrees
atoms outside contour = 29334, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.06343041 0.93481053 -0.34943649 -75.98136717
-0.96777508 0.14311689 0.20719304 73.16732664
0.24369650 0.32503359 0.91376430 -172.25869083
Axis 0.05902718 -0.29710455 -0.95301872
Axis point 20.28156886 110.30986267 0.00000000
Rotation angle (degrees) 86.55124462
Shift along axis 137.94244563
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.088339,0.17841,-0.97998,65.866,0.9539,0.29844,-0.031656,-137.09,0.28682,-0.93761,-0.19655,61.045
> view matrix models
> #3,-0.77958,-0.14753,-0.60869,142.13,0.30925,0.75445,-0.57893,-50.189,0.54463,-0.63956,-0.54253,36.263
> view matrix models
> #3,-0.68488,-0.25892,-0.6811,152.65,0.2539,0.79135,-0.55615,-50.7,0.68299,-0.55383,-0.47624,1.9746
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2953, steps = 100
shifted from previous position = 2.26
rotated from previous position = 5.75 degrees
atoms outside contour = 29144, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.32717486 0.90369714 -0.27620301 -34.58229907
-0.27739724 0.18756298 0.94226902 -99.89819895
0.90333127 0.38490469 0.18931720 -173.86815125
Axis -0.31671802 -0.67026134 -0.67114785
Axis point 37.30300004 24.84897922 0.00000000
Rotation angle (degrees) 118.36894362
Shift along axis 194.60197360
> ui tool show "Side View"
> view matrix models
> #3,0.30701,-0.80724,0.5041,-37.972,-0.576,-0.57925,-0.57679,210.48,0.7576,-0.11328,-0.64281,-40.21
> view matrix models
> #3,0.33618,-0.64954,0.68197,-81.039,-0.38259,-0.75586,-0.53132,203.13,0.86059,-0.082294,-0.50261,-72.584
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2775, steps = 92
shifted from previous position = 1.45
rotated from previous position = 2.21 degrees
atoms outside contour = 29565, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.72657730 -0.68421690 0.06271102 160.38527020
-0.63948266 0.70679767 0.30248798 -44.23086362
-0.25129140 0.17967829 -0.95108799 121.86194393
Axis -0.36107867 0.92321357 0.13152528
Axis point 77.70077385 0.00000000 58.02708945
Rotation angle (degrees) 170.20872327
Shift along axis -82.71830678
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2775, steps = 100
shifted from previous position = 0.00323
rotated from previous position = 0.00407 degrees
atoms outside contour = 29553, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.72655483 -0.68423547 0.06276870 160.37500085
-0.63948256 0.70678552 0.30251660 -44.23399047
-0.25135659 0.17965541 -0.95107508 121.87102156
Axis -0.36108730 0.92320979 0.13152815
Axis point 77.69770694 0.00000000 58.02996888
Rotation angle (degrees) 170.20481351
Shift along axis -82.71715791
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2775, steps = 120
shifted from previous position = 0.02
rotated from previous position = 0.0172 degrees
atoms outside contour = 29580, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.72675794 -0.68401773 0.06279054 160.36864597
-0.63926531 0.70697972 0.30252197 -44.30257504
-0.25132204 0.17972043 -0.95107193 121.85435159
Axis -0.36094736 0.92326287 0.13153960
Axis point 77.68353108 0.00000000 58.02801973
Rotation angle (degrees) 170.20578263
Shift along axis -82.75888932
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2775, steps = 104
shifted from previous position = 0.00103
rotated from previous position = 0.0014 degrees
atoms outside contour = 29579, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
-0.72677405 -0.68400043 0.06279257 160.36839398
-0.63924993 0.70699657 0.30251509 -44.30629574
-0.25131458 0.17971997 -0.95107398 121.85305272
Axis -0.36093652 0.92326750 0.13153690
Axis point 77.68275458 0.00000000 58.02773068
Rotation angle (degrees) 170.20600307
Shift along axis -82.76120028
> fitmap #3 inMap #9
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc z
flip (#9) using 38685 atoms
average map value = 0.2844, steps = 104
shifted from previous position = 3.1
rotated from previous position = 7.24 degrees
atoms outside contour = 29462, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
z flip (#9) coordinates:
Matrix rotation and translation
-0.79862444 -0.60054520 0.03929974 162.15132244
-0.57546193 0.78112175 0.24226511 -51.80182762
-0.17618903 0.17086333 -0.96941382 113.61075455
Axis -0.31262851 0.94350503 0.10982564
Axis point 76.23277418 0.00000000 55.72429923
Rotation angle (degrees) 173.44275319
Shift along axis -87.09103837
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!4 models
> hide #!4 models
> show #!9 models
> open /Users/ivavo639/Downloads/cryosparc_P462_J19_004_volume_map.mrc format
> mrc
Opened cryosparc_P462_J19_004_volume_map.mrc as #10, grid size 256,256,256,
pixel 1.43, shown at level 0.117, step 1, values float32
> hide #!9 models
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.22159,-0.65294,0.72427,126.92,-0.39698,-0.7388,-0.54458,389.3,0.89068,-0.16685,-0.42292,152.53
> ui mousemode right translate
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.22159,-0.65294,0.72427,149.47,-0.39698,-0.7388,-0.54458,379.21,0.89068,-0.16685,-0.42292,146.39
> volume #10 level 0.459
> fitmap #3 inMap #9
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc z
flip (#9) using 38685 atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 38685, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
z flip (#9) coordinates:
Matrix rotation and translation
-0.79862444 -0.60054520 0.03929974 205.35595314
-0.57546193 0.78112175 0.24226511 -403.96175953
-0.17618903 0.17086333 -0.96941382 59.05108160
Axis -0.31262851 0.94350503 0.10982564
Axis point 39.00783590 0.00000000 50.96736470
Rotation angle (degrees) 173.44275319
Shift along axis -438.85475582
> fitmap #3 inMap #9
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc z
flip (#9) using 38685 atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 38685, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
z flip (#9) coordinates:
Matrix rotation and translation
-0.79862444 -0.60054520 0.03929974 205.35595314
-0.57546193 0.78112175 0.24226511 -403.96175953
-0.17618903 0.17086333 -0.96941382 59.05108160
Axis -0.31262851 0.94350503 0.10982564
Axis point 39.00783590 0.00000000 50.96736470
Rotation angle (degrees) 173.44275319
Shift along axis -438.85475582
> fitmap #3 inMap #10
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map.mrc (#10)
using 38685 atoms
average map value = 0.2711, steps = 60
shifted from previous position = 2.66
rotated from previous position = 4.9 degrees
atoms outside contour = 28711, contour level = 0.459
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map.mrc (#10)
coordinates:
Matrix rotation and translation
0.22846480 -0.61166240 0.75741201 138.62521316
-0.44429074 -0.75775573 -0.47792469 381.37369831
0.86626184 -0.22732217 -0.44487645 159.78664818
Axis 0.78212842 -0.33971946 0.52236561
Axis point 0.00000000 214.23550519 54.34878348
Rotation angle (degrees) 170.78117674
Shift along axis 62.32969998
> ui tool show "Side View"
> fitmap #3 inMap #10
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map.mrc (#10)
using 38685 atoms
average map value = 0.2711, steps = 40
shifted from previous position = 0.0107
rotated from previous position = 0.0156 degrees
atoms outside contour = 28718, contour level = 0.459
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map.mrc (#10)
coordinates:
Matrix rotation and translation
0.22826062 -0.61161282 0.75751360 138.63232964
-0.44441216 -0.75772130 -0.47786637 381.36961334
0.86625338 -0.22757018 -0.44476611 159.81151092
Axis 0.78206644 -0.33976442 0.52242915
Axis point 0.00000000 214.24749571 54.32716021
Rotation angle (degrees) 170.79180776
Shift along axis 62.33405901
> view matrix models
> #3,0.22826,-0.61161,0.75751,138.55,-0.44441,-0.75772,-0.47787,381.29,0.86625,-0.22757,-0.44477,159.57
> fitmap #3 inMap #10
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map.mrc (#10)
using 38685 atoms
average map value = 0.2711, steps = 48
shifted from previous position = 0.279
rotated from previous position = 0.0142 degrees
atoms outside contour = 28705, contour level = 0.459
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map.mrc (#10)
coordinates:
Matrix rotation and translation
0.22805286 -0.61162252 0.75756834 138.63745857
-0.44453412 -0.75764869 -0.47786807 381.36036125
0.86624553 -0.22778579 -0.44467103 159.84625757
Axis 0.78200210 -0.33983131 0.52248196
Axis point 0.00000000 214.25534210 54.31954274
Rotation angle (degrees) 170.79898206
Shift along axis 62.33337730
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.58611,-0.3393,-0.73576,240.53,-0.72545,-0.62417,-0.29005,376.59,-0.36083,0.70376,-0.61198,214.5
> view matrix models
> #3,-0.47084,-0.21482,-0.85566,364.8,-0.022948,-0.96659,0.25529,269.68,-0.88192,0.13984,0.45018,217.2
> fitmap #3 inMap #10
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map.mrc (#10)
using 38685 atoms
average map value = 0.2784, steps = 96
shifted from previous position = 0.357
rotated from previous position = 8.9 degrees
atoms outside contour = 28477, contour level = 0.459
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map.mrc (#10)
coordinates:
Matrix rotation and translation
-0.41815089 -0.12620603 -0.89956761 352.96886359
0.03095733 -0.99170606 0.12474266 281.55731057
-0.90784992 0.02431304 0.41858977 237.61160163
Axis -0.53793411 0.04436283 0.84181876
Axis point 244.60852697 144.66253492 0.00000000
Rotation angle (degrees) 174.64378383
Shift along axis 22.64258944
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.012553,0.99443,-0.1047,78.894,-0.11922,-0.10545,-0.98725,325.94,-0.99279,8.8711e-05,0.11988,285.77
> view matrix models
> #3,0.18802,0.55359,-0.81129,190.7,0.61843,-0.70844,-0.34009,233.63,-0.76301,-0.43778,-0.47556,380.65
> view matrix models
> #3,0.25619,0.60119,-0.75692,170.61,0.62495,-0.70041,-0.34478,232.46,-0.73743,-0.38471,-0.55515,380.77
> view matrix models
> #3,0.54104,0.32576,-0.77534,171.67,0.72616,-0.64602,0.23529,145.6,-0.42424,-0.69032,-0.58607,383.52
> view matrix models
> #3,0.60604,0.31544,-0.73021,159.89,0.73328,-0.57729,0.35921,122.01,-0.30824,-0.75315,-0.58117,376.66
> fitmap #3 inMap #10
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map.mrc (#10)
using 38685 atoms
average map value = 0.2779, steps = 68
shifted from previous position = 0.332
rotated from previous position = 2.06 degrees
atoms outside contour = 28364, contour level = 0.459
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map.mrc (#10)
coordinates:
Matrix rotation and translation
0.58100248 0.32641636 -0.74557929 163.67997195
0.74558018 -0.58083501 0.32671225 124.74297500
-0.32641433 -0.74570977 -0.58083615 377.95369949
Axis -0.87519534 -0.34207729 0.34207636
Axis point 0.00000000 108.06375287 200.36414483
Rotation angle (degrees) 142.21676669
Shift along axis -56.63466097
> ui tool show "Fit in Map"
> open /Users/ivavo639/Downloads/cryosparc_P462_J16_class_00_final_volume.mrc
> format mrc
Opened cryosparc_P462_J16_class_00_final_volume.mrc as #11, grid size
128,128,128, pixel 1.9, shown at level 0.425, step 1, values float32
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.581,0.32642,-0.74558,-48.02,0.74558,-0.58084,0.32671,-33.715,-0.32641,-0.74571,-0.58084,142.52
> view matrix models
> #3,0.581,0.32642,-0.74558,-56.669,0.74558,-0.58084,0.32671,-40.244,-0.32641,-0.74571,-0.58084,132.84
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> ui mousemode right rotate
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.581,0.32642,-0.74558,-65.736,0.74558,-0.58084,0.32671,-52.449,-0.32641,-0.74571,-0.58084,143.82
> ui tool show "Side View"
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.581,0.32642,-0.74558,-61.359,0.74558,-0.58084,0.32671,-56.764,-0.32641,-0.74571,-0.58084,148.89
> view matrix models
> #3,0.581,0.32642,-0.74558,-58.769,0.74558,-0.58084,0.32671,-51.236,-0.32641,-0.74571,-0.58084,154.26
> fitmap #3 inMap #4
Fit molecule 7a6a (#3) to map cryosparc_P462_J19_004_volume_map_sharp.mrc (#4)
using 38685 atoms
average map value = 0.2834, steps = 96
shifted from previous position = 2.42
rotated from previous position = 5.08 degrees
atoms outside contour = 29347, contour level = 0.6768
Position of 7a6a (#3) relative to cryosparc_P462_J19_004_volume_map_sharp.mrc
(#4) coordinates:
Matrix rotation and translation
0.92676236 0.14672688 0.34580741 -166.76742165
-0.34597786 0.69198091 0.63361008 -114.80420674
-0.14632449 -0.70684768 0.69206611 19.63278500
Axis -0.88739375 0.32579525 -0.32617448
Axis point 0.00000000 -21.80414135 224.16012045
Rotation angle (degrees) 49.04965719
Shift along axis 104.18198896
> hide #3:HOH
> show sel atoms
> hide sel cartoons
> view #3/A
> view #3/A:159-163
> volume #!4 style mesh
> ui tool show "Volume Viewer"
> volume #4
> volume #4 level 1.219
> volume #4 style surface
> volume #4 level 0.7446
> volume #4 level 0.7107
> volume #4 step 2
> volume #4 level 0.5936
> volume #4 step 1
> volume #4 level 0.6727
> save /Users/ivavo639/Desktop/image6.png supersample 3
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: MXCV3KS/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.121.1
OS Loader Version: 11881.121.1
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 3 days, 42 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL P2723DE:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 5 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 5 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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