![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 months ago
Closed 6 months ago
#17759 closed defect (duplicate)
Crash moving window between screens
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
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{
"uptime" : 49000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,3",
"coalitionID" : 8302,
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"build" : "24F74",
"releaseType" : "User"
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"captureTime" : "2025-05-21 18:48:24.7340 -0400",
"codeSigningMonitor" : 1,
"incident" : "6CE19EA8-53C5-4429-8B10-D448A0BE0C0C",
"pid" : 12029,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-05-21 18:41:42.7534 -0400",
"procStartAbsTime" : 1182247526299,
"procExitAbsTime" : 1191894770396,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "9906B31B-7731-A943-51AA-92FF9A6C9F23",
"appleIntelligenceStatus" : {"reasons":["assetIsNotReady"],"state":"restricted"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
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"sleepWakeUUID" : "5D265E5C-6A7C-474A-B345-3ABEA0B6A111",
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"exception" : {"codes":"0x0000000000000001, 0x0000000000000169","rawCodes":[1,361],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000169"},
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"arch" : "arm64e",
"base" : 6751473664,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5500928,
"uuid" : "df489a59-b4f6-32b8-9bb4-9b832960aa52",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3502.1.401"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6774476800,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 14586624,
"uuid" : "e8f6a451-0acc-3e05-b18f-fec6618ce44a",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "3502.1.401"
}
],
"sharedCache" : {
"base" : 6746357760,
"size" : 5047205888,
"uuid" : "d7397d7f-8df9-3920-81a7-c0a144be9c51"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=5.5G written=4475K(0%) resident=2939K(0%) swapped_out=1536K(0%) unallocated=5.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 1600K 27 \nColorSync 656K 33 \nCoreAnimation 3472K 137 \nCoreGraphics 80K 5 \nCoreUI image data 5504K 42 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 4.7G 110 \nMALLOC guard page 288K 18 \nMach message 96K 5 \nOpenGL GLSL 384K 4 \nSTACK GUARD 736K 46 \nStack 212.0M 47 \nStack Guard 56.0M 1 \nVM_ALLOCATE 222.6M 229 \nVM_ALLOCATE (reserved) 384.0M 3 reserved VM address space (unallocated)\n__AUTH 5527K 699 \n__AUTH_CONST 77.5M 946 \n__CTF 824 1 \n__DATA 36.6M 1160 \n__DATA_CONST 38.0M 1169 \n__DATA_DIRTY 2778K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 654.0M 218 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1072 \n__TEXT (graphics) 78.5M 118 \n__TPRO_CONST 128K 2 \ndyld private memory 10.4M 85 \nmapped file 299.0M 72 \npage table in kernel 2939K 1 \nshared memory 3792K 24 \n=========== ======= ======= \nTOTAL 8.1G 6627 \nTOTAL, minus reserved VM space 7.7G 6627 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
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"logWritingSignature" : "556647c35ef89b3806408c99b5701d85537eb44e",
"trialInfo" : {
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"experimentId" : "67f4692f84eaf455d73c6090",
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Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/leoliumcgill/Desktop/ISG15 structures/isg15 superimposition
> 2.cxs"
Log from Wed May 21 19:51:14 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/leoliumcgill/Desktop/ISG15 structures/isg15-2.cxs"
Log from Mon May 19 20:28:28 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/leoliumcgill/Desktop/ISG15 structures/with labels.cxs"
Log from Mon May 19 18:15:08 2025UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/leoliumcgill/Desktop/isg15.cxs
Log from Mon May 19 02:55:39 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 6XA9 fromDatabase pdb format mmcif
Summary of feedback from opening 6XA9 fetched from pdb
---
notes | Fetching compressed mmCIF 6xa9 from http://files.rcsb.org/download/6xa9.cif
Fetching CCD AYE from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/AYE/AYE.cif
Fetching CCD GOL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/GOL/GOL.cif
Fetching CCD ZN from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/ZN/ZN.cif
6xa9 title:
SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide [more
info...]
Chain information for 6xa9 #1
---
Chain | Description | UniProt
A C E | Non-structural protein 3 | R1AB_SARS2 0-315
B D F | ISG15 CTD-propargylamide | ISG15_HUMAN 79-157
Non-standard residues in 6xa9 #1
---
AYE — prop-2-en-1-amine (allylamine)
GOL — glycerol (glycerin; propane-1,2,3-triol)
ZN — zinc ion
6xa9 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
3| author_and_software_defined_assembly
12 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> rainbow
> hide #!1 models
> show #!1 models
> show cartoons
> hide surfaces
> color byhetero
[Repeated 5 time(s)]
> hide #1.2 models
> show #1.2 models
> hide #1.1 models
> show #1.1 models
> hide #!1 models
> show #!1 models
> select add #1
8957 atoms, 9125 bonds, 13 pseudobonds, 1212 residues, 3 models selected
> select subtract #1
Nothing selected
> select add #1.1
12 pseudobonds, 1 model selected
> select subtract #1.1
Nothing selected
> view #1 clip false
> sym #1
6xa9 mmCIF Assemblies
---
1| author_and_software_defined_assembly| 1 copy of chains A,B
2| author_and_software_defined_assembly| 1 copy of chains C,D
3| author_and_software_defined_assembly| 1 copy of chains E,F
> log metadata #1
Metadata for 6xa9 #1
---
Title | SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide
Citations | Klemm, T., Ebert, G., Calleja, D.J., Allison, C.C., Richardson, L.W., Bernardini, J.P., Lu, B.G., Kuchel, N.W., Grohmann, C., Shibata, Y., Gan, Z.Y., Cooney, J.P., Doerflinger, M., Au, A.E., Blackmore, T.R., van der Heden van Noort, G.J., Geurink, P.P., Ovaa, H., Newman, J., Riboldi-Tunnicliffe, A., Czabotar, P.E., Mitchell, J.P., Feltham, R., Lechtenberg, B.C., Lowes, K.N., Dewson, G., Pellegrini, M., Lessene, G., Komander, D. (2020). Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2. Embo J., 39, e106275-e106275. PMID: 32845033. DOI: 10.15252/embj.2020106275
Adams, P.D., Afonine, P.V., Bunkoczi, G., Chen, V.B., Davis, I.W., Echols, N.,
Headd, J.J., Hung, L.W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J.,
Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S.,
Terwilliger, T.C., Zwart, P.H. (2010). PHENIX: a comprehensive Python-based
system for macromolecular structure solution. Acta Crystallogr. D Biol.
Crystallogr., 66, 213-221. PMID: 20124702. DOI: 10.1107/S0907444909052925
Non-standard residues | AYE — prop-2-en-1-amine (allylamine)
GOL — glycerol (glycerin; propane-1,2,3-triol)
ZN — zinc ion
Gene sources | Severe acute respiratory syndrome coronavirus 2 (2019-ncov)
Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 2.90Å
> log chains #1
Chain information for 6xa9 #1
---
Chain | Description | UniProt
A C E | Non-structural protein 3 | R1AB_SARS2 0-315
B D F | ISG15 CTD-propargylamide | ISG15_HUMAN 79-157
> sequence chain #1/A#1/C#1/E
Alignment identifier is 1
> hide surfaces
> hide cartoons
> hide atoms
[Repeated 2 time(s)]
> show atoms
> interfaces ~solvent
6 buried areas: E F 906, C D 890, A B 884, A C 620, A E 359, E D 350
> interfaces ~solvent
6 buried areas: E F 906, C D 890, A B 884, A C 620, A E 359, E D 350
> style ball
Changed 8957 atom styles
> style stick
Changed 8957 atom styles
> style sphere
Changed 8957 atom styles
> style stick
Changed 8957 atom styles
> show cartoons
> show atoms
> hide cartoons
> show cartoons
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides fill
> style nucleic stick
Changed 0 atom styles
> hide surfaces
[Repeated 3 time(s)]
> hide atoms
[Repeated 1 time(s)]
> hide surfaces
> hide cartoons
[Repeated 1 time(s)]
> show cartoons
> color bychain
Alignment identifier is 1
Alignment identifier is 2
> select clear
> select /A,C:2-296/E:5-296
6703 atoms, 6866 bonds, 1 pseudobond, 880 residues, 2 models selected
> select /A,C:2-4
44 atoms, 42 bonds, 6 residues, 1 model selected
> select /A,C:2
14 atoms, 12 bonds, 2 residues, 1 model selected
> select
> /A,C:4-10,17-22,34-36,39-40,54-57,97-98,101-102,182-189,193-200,206-208,220-223,229-238,241-254,260-267,270-278,282-286,289-293,295-306,309-311/E:5-10,17-22,34-36,39-40,54-57,97-98,101-102,182-189,193-200,206-208,220-223,229-238,241-254,260-267,270-278,282-286,289-293,295-306,309-311
2616 atoms, 2625 bonds, 344 residues, 1 model selected
> select clear
> show #!1 target m
> hide #1.1 models
> show #1.1 models
> sym #1
6xa9 mmCIF Assemblies
---
1| author_and_software_defined_assembly| 1 copy of chains A,B
2| author_and_software_defined_assembly| 1 copy of chains C,D
3| author_and_software_defined_assembly| 1 copy of chains E,F
> log metadata #1
Metadata for 6xa9 #1
---
Title | SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide
Citations | Klemm, T., Ebert, G., Calleja, D.J., Allison, C.C., Richardson, L.W., Bernardini, J.P., Lu, B.G., Kuchel, N.W., Grohmann, C., Shibata, Y., Gan, Z.Y., Cooney, J.P., Doerflinger, M., Au, A.E., Blackmore, T.R., van der Heden van Noort, G.J., Geurink, P.P., Ovaa, H., Newman, J., Riboldi-Tunnicliffe, A., Czabotar, P.E., Mitchell, J.P., Feltham, R., Lechtenberg, B.C., Lowes, K.N., Dewson, G., Pellegrini, M., Lessene, G., Komander, D. (2020). Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2. Embo J., 39, e106275-e106275. PMID: 32845033. DOI: 10.15252/embj.2020106275
Adams, P.D., Afonine, P.V., Bunkoczi, G., Chen, V.B., Davis, I.W., Echols, N.,
Headd, J.J., Hung, L.W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J.,
Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S.,
Terwilliger, T.C., Zwart, P.H. (2010). PHENIX: a comprehensive Python-based
system for macromolecular structure solution. Acta Crystallogr. D Biol.
Crystallogr., 66, 213-221. PMID: 20124702. DOI: 10.1107/S0907444909052925
Non-standard residues | AYE — prop-2-en-1-amine (allylamine)
GOL — glycerol (glycerin; propane-1,2,3-triol)
ZN — zinc ion
Gene sources | Severe acute respiratory syndrome coronavirus 2 (2019-ncov)
Homo sapiens (human)
Experimental method | X-ray diffraction
Resolution | 2.90Å
> log chains #1
Chain information for 6xa9 #1
---
Chain | Description | UniProt
A C E | Non-structural protein 3 | R1AB_SARS2 0-315
B D F | ISG15 CTD-propargylamide | ISG15_HUMAN 79-157
> select /A:2-314
2418 atoms, 2477 bonds, 313 residues, 1 model selected
> select /A:2-314
2418 atoms, 2477 bonds, 313 residues, 1 model selected
> select /A:2-314
2418 atoms, 2477 bonds, 313 residues, 1 model selected
> select /C:2-314
2392 atoms, 2451 bonds, 313 residues, 1 model selected
> select /C:2-314
2392 atoms, 2451 bonds, 313 residues, 1 model selected
> select /A:2-314
2418 atoms, 2477 bonds, 313 residues, 1 model selected
> select /C:2-314
2392 atoms, 2451 bonds, 313 residues, 1 model selected
> select /E:5-313
2299 atoms, 2356 bonds, 1 pseudobond, 307 residues, 2 models selected
> select /B:78-157
623 atoms, 634 bonds, 80 residues, 1 model selected
> select /A:2-314
2418 atoms, 2477 bonds, 313 residues, 1 model selected
> select /B:78-157
623 atoms, 634 bonds, 80 residues, 1 model selected
> select chain a,b
Expected an objects specifier or a keyword
> sel/chain a,b
Unknown command: sel/chain a,b
> view #1 clip false
Alignment identifier is 1/B
> select add #1.1
623 atoms, 634 bonds, 12 pseudobonds, 80 residues, 2 models selected
> select add #1
8957 atoms, 9125 bonds, 13 pseudobonds, 1212 residues, 3 models selected
> select subtract #1
Nothing selected
> select add #1
8957 atoms, 9125 bonds, 13 pseudobonds, 1212 residues, 3 models selected
> select subtract #1
Nothing selected
> select add #1.1
12 pseudobonds, 1 model selected
> select subtract #1.1
Nothing selected
> select /A
2445 atoms, 2492 bonds, 4 pseudobonds, 325 residues, 2 models selected
> select /B
624 atoms, 634 bonds, 81 residues, 1 model selected
> select /A
2445 atoms, 2492 bonds, 4 pseudobonds, 325 residues, 2 models selected
> select /D
589 atoms, 600 bonds, 79 residues, 1 model selected
> cartoon hide sel
> select /D
589 atoms, 600 bonds, 79 residues, 1 model selected
> select /D
589 atoms, 600 bonds, 79 residues, 1 model selected
> select /A
2445 atoms, 2492 bonds, 4 pseudobonds, 325 residues, 2 models selected
> select /C
2427 atoms, 2466 bonds, 4 pseudobonds, 333 residues, 2 models selected
> cartoon hide (#!1 & sel)
> select /E
2317 atoms, 2366 bonds, 5 pseudobonds, 315 residues, 3 models selected
> cartoon hide (#!1 & sel)
> select /F
555 atoms, 564 bonds, 79 residues, 1 model selected
> cartoon hide sel
> select /B
624 atoms, 634 bonds, 81 residues, 1 model selected
> color sel lime
> color sel blue
> color sel dark gray
> select /A
2445 atoms, 2492 bonds, 4 pseudobonds, 325 residues, 2 models selected
> color (#!1 & sel) light sea green
> select /B
624 atoms, 634 bonds, 81 residues, 1 model selected
> color sel hot pink
> color sel orange
> view sel
> cofr sel
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain /A /C /E
Alignment identifier is 1
> select
> /A,C:26-32,47-51,61-73,78-91,110-121,129-141,144-156,164-175,201-205,212-219/E:26-32,47-50,61-73,78-91,110-121,129-141,144-156,164-175,201-205,212-219
2431 atoms, 2469 bonds, 305 residues, 1 model selected
> select clear
> save /Users/leoliumcgill/Desktop/isg15.cxs
——— End of log from Mon May 19 02:55:39 2025 ———
opened ChimeraX session
> delete /c
> delete /e
> lighting simple
> lighting soft
> set bgColor white
> set bgColor gray
> set bgColor black
> set bgColor gray
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting flat
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes true
> lighting shadows true
> lighting flat
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
> lighting shadows true intensity 0.5
> lighting soft
> lighting simple
[Repeated 3 time(s)]
> lighting soft
> lighting full
[Repeated 2 time(s)]
> lighting soft
> lighting flat
[Repeated 2 time(s)]
> lighting soft
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> graphics silhouettes true
> lighting shadows true
> lighting shadows false
> lighting shadows true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting simple
[Repeated 2 time(s)]
> lighting soft
[Repeated 1 time(s)]
> lighting full
> lighting soft
> delete /d
> delete /f
Cell requested for row 0 is out of bounds for table with 3 rows! Resizing
table model.
> hide #1.1 models
> hide #1.2 models
> select subtract #1.2
Nothing selected
> select add #1.2
Nothing selected
> select subtract #1.2
Nothing selected
> ui tool show "Side View"
[Repeated 1 time(s)]Alignment identifier is 1/A
Alignment identifier is 1/B
> select
> /A:26-32,47-51,61-73,78-91,110-121,129-141,144-156,164-174,201-205,212-219
807 atoms, 819 bonds, 101 residues, 1 model selected
> select
> /A:4-10,17-22,34-36,39-40,54-57,97-98,101-102,182-189,193-200,206-208,220-223,229-238,241-254,260-267,270-278,282-286,289-293,295-306,309-311
893 atoms, 896 bonds, 115 residues, 1 model selected
> select clear
[Repeated 3 time(s)]
> select
> /A:26-32,47-51,61-73,78-91,110-121,129-141,144-156,164-174,201-205,212-219
807 atoms, 819 bonds, 101 residues, 1 model selected
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:171-174
40 atoms, 41 bonds, 4 residues, 1 model selected
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:170-171
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /A:171-174
40 atoms, 41 bonds, 4 residues, 1 model selected
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:170-171
18 atoms, 18 bonds, 2 residues, 1 model selected
> show sel atoms
> color sel purple
> color sel hot pink
> color sel red
> color sel magenta
> color sel hot pink
> select /A:171-174
40 atoms, 41 bonds, 4 residues, 1 model selected
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel hot pink
> select
> /A:26-32,47-51,61-73,78-91,110-121,129-141,144-156,164-174,201-205,212-219
807 atoms, 819 bonds, 101 residues, 1 model selected
> select /A:261
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:261
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel hot pink
> select clear
> save "/Users/leoliumcgill/Desktop/ISG15 structures/with labels.cxs"
> includeMaps true
——— End of log from Mon May 19 18:15:08 2025 ———
opened ChimeraX session
> help help:user
> cartoon style protein modeHelix tube
> cartoon style protein modeHelix tube r=1
Expected a keyword
> cartoon style protein modeHelix tube (2)
Expected a keyword
> cartoon style protein modeHelix tube (auto, 2)
Expected a keyword
> cartoon style protein modeHelix tube (auto, 2)
Expected a keyword
> cartoon style protein modeHelix tube (auto, default)
Expected a keyword
> cartoon style protein modeHelix tube radius 2
> cartoon style protein modeHelix tube radius 1
> cartoon style protein modeHelix tube radius 2
> cartoon style protein modeHelix tube radius 1.5
> graphics silhouettes true
> lighting soft
[Repeated 1 time(s)]
> lighting simple
> lighting soft
[Repeated 1 time(s)]
> lighting full
> lighting flat
[Repeated 1 time(s)]
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> cartoon style protein modeHelix tube radius 1.5 sides 12
> cartoon style protein modeHelix tube radius 1.5 sides 24
> cartoon style protein modeHelix ribbon
Invalid "modeHelix" argument: Should be one of 'default', 'tube', or 'wrap'
> cartoon style protein modeHelix default
> cartoon style protein modeHelix wrap
> cartoon style protein modeHelix tube
> label @@ dispaly
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:170
6 atoms, 5 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "/{0.chain_id} {0.name} {0.number}{0.insertion_code}"
> undo
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select clear
> ui tool show "Find Cavities"
> select text "{0.name}{0.number}" size 48
Expected an objects specifier or a keyword
> select text "{0.name}{0.number}" height 1.5
Expected an objects specifier or a keyword
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:170
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select text "{0.name}{0.number}" height 1.5
Expected an objects specifier or a keyword
> select text "{0.name}{0.number}" height 2
Expected an objects specifier or a keyword
> label sel text {0.name}{0.number} height 1.5
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> label sel text {0.name}{0.number} height 1.5
> select /A:170
6 atoms, 5 bonds, 1 residue, 1 model selected
> label sel text {0.name}{0.number} height 1.5
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text {0.name}{0.number} height 1.5
> select /A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> label sel attribute label_one_letter_code
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> select /A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> select /A:170
6 atoms, 5 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> select /A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> select clear
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15-2.cxs"
——— End of log from Mon May 19 20:28:28 2025 ———
opened ChimeraX session
> open " 6yva" fromDatabase pdb format mmcif
PDB identifiers are either 4 or 8 characters long, got " 6yva"
> open 6yva fromDatabase pdb format mmcif
6yva title:
PLpro-C111S with mISG15 [more info...]
Chain information for 6yva #2
---
Chain | Description | UniProt
A | Replicase polyprotein 1a | R1A_SARS2 1-315
C | Ubiquitin-like protein ISG15 | ISG15_MOUSE 1-161
Non-standard residues in 6yva #2
---
ZN — zinc ion
6 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> view
> ui tool show Matchmaker
> matchmaker #!2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6xa9, chain A (#1) with 6yva, chain A (#2), sequence alignment
score = 1439.8
RMSD between 250 pruned atom pairs is 0.689 angstroms; (across all 282 pairs:
1.394)
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> cartoon style protein modeHelix tube/default/warp rad 2
Invalid "modeHelix" argument: Should be one of 'default', 'tube', or 'wrap'
> cartoon style protein modeHelix tube radius 2
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> cartoon style protein modeHelix tube radius 1.5
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
Cell requested for row 0 is out of bounds for table with 3 rows! Resizing
table model.
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select #2/A
2196 atoms, 2233 bonds, 2 pseudobonds, 300 residues, 2 models selected
> color (#!2 & sel) forest green
> color (#!2 & sel) light sea green
> color (#!2 & sel) dim gray
> color (#!2 & sel) cyan
> color (#!2 & sel) light sea green
> color (#!2 & sel) cornflower blue
> color (#!2 & sel) lime
> color (#!2 & sel) gray
> color (#!2 & sel) blue
> color (#!2 & sel) #edfff0ff
> color (#!2 & sel) #ecfff0ff
[Repeated 1 time(s)]
> color (#!2 & sel) #defff0ff
> color (#!2 & sel) #c9ffeeff
> color (#!2 & sel) #c0ffeeff
> color (#!2 & sel) #adffeeff
> color (#!2 & sel) #acffeeff
> color (#!2 & sel) #abffeeff
> color (#!2 & sel) #a6ffefff
> color (#!2 & sel) #a3ffefff
> color (#!2 & sel) #a0ffefff
> color (#!2 & sel) #87ffedff
> color (#!2 & sel) #77ffebff
> color (#!2 & sel) #74ffeaff
> color (#!2 & sel) #73ffeaff
[Repeated 1 time(s)]
> color (#!2 & sel) #73ffe9ff
> color (#!2 & sel) #73ffe8ff
> color (#!2 & sel) #73ffe7ff
> color (#!2 & sel) #73ffe4ff
> color (#!2 & sel) #73ffe3ff
> color (#!2 & sel) #74ffe1ff
> color (#!2 & sel) #73ffe0ff
> color (#!2 & sel) #74ffdeff
[Repeated 1 time(s)]
> color (#!2 & sel) #74ffddff
> color (#!2 & sel) #74ffdbff
> color (#!2 & sel) #76ffdaff
> color (#!2 & sel) #77ffd8ff
> color (#!2 & sel) #79ffd7ff
> color (#!2 & sel) #7affd7ff
> color (#!2 & sel) #7bffd7ff
> color (#!2 & sel) #86ffd7ff
> color (#!2 & sel) #91ffdaff
> color (#!2 & sel) #9dffdcff
> color (#!2 & sel) #a7ffe0ff
[Repeated 1 time(s)]
> color (#!2 & sel) #a8ffe0ff
> color (#!2 & sel) #a8ffe1ff
[Repeated 1 time(s)]
> color (#!2 & sel) #a9ffe2ff
> color (#!2 & sel) #a9ffe3ff
[Repeated 2 time(s)]
> color (#!2 & sel) #a9ffe4ff
> color (#!2 & sel) #a8ffe5ff
> color (#!2 & sel) #a9ffe5ff
> color (#!2 & sel) #a9ffe6ff
> color (#!2 & sel) #a8ffe6ff
> color (#!2 & sel) #a8ffe8ff
> color (#!2 & sel) #a8ffe9ff
> color (#!2 & sel) #a7ffe9ff
> color (#!2 & sel) #a6ffebff
> color (#!2 & sel) #a5ffecff
> color (#!2 & sel) #a5ffedff
> color (#!2 & sel) #a5ffeeff
> color (#!2 & sel) #a4ffeeff
> color (#!2 & sel) #a4ffefff
> color (#!2 & sel) #9afff3ff
> color (#!2 & sel) #8bfff6ff
> color (#!2 & sel) #7bfffaff
> color (#!2 & sel) #72fffaff
> color (#!2 & sel) #69fffcff
> color (#!2 & sel) #67fffcff
[Repeated 1 time(s)]
> color (#!2 & sel) #67fffdff
> color (#!2 & sel) #66fffdff
> color (#!2 & sel) #64fffeff
> color (#!2 & sel) #61feffff
> color (#!2 & sel) #5efdffff
> color (#!2 & sel) #5bfbffff
> color (#!2 & sel) #55f6ffff
> color (#!2 & sel) #4cf4ffff
> color (#!2 & sel) #46f2ffff
> color (#!2 & sel) #44f1ffff
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> color (#!2 & sel) #43f2ffff
> color (#!2 & sel) #43f3ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #43f4ffff
> color (#!2 & sel) #43f5ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #44f7ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #44f8ffff
> color (#!2 & sel) #45f9ffff
> color (#!2 & sel) #45fbffff
> color (#!2 & sel) #46fbffff
> color (#!2 & sel) #46fcffff
> color (#!2 & sel) #47fcffff
[Repeated 1 time(s)]
> color (#!2 & sel) #47fbffff
> color (#!2 & sel) #46f6ffff
> color (#!2 & sel) #46f4ffff
> color (#!2 & sel) #45f1ffff
> color (#!2 & sel) #45efffff
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> color (#!2 & sel) #3fd5ffff
> color (#!2 & sel) #3dd2ffff
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> color (#!2 & sel) #38c6ffff
> color (#!2 & sel) #36c0ffff
> color (#!2 & sel) #35bbffff
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> color (#!2 & sel) #33b9ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #33b8ffff
> color (#!2 & sel) #33b9ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #34baffff
[Repeated 1 time(s)]
> color (#!2 & sel) #34bbffff
> color (#!2 & sel) #35bcffff
> color (#!2 & sel) #35beffff
> color (#!2 & sel) #38cdffff
> color (#!2 & sel) #3cddffff
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> color (#!2 & sel) #3cfbffff
> color (#!2 & sel) #39fff7ff
> color (#!2 & sel) #37ffe2ff
> color (#!2 & sel) #37ffdfff
> color (#!2 & sel) #36ffdeff
> color (#!2 & sel) #36ffd9ff
> color (#!2 & sel) #35ffd8ff
> color (#!2 & sel) #35ffd7ff
[Repeated 1 time(s)]
> color (#!2 & sel) #35ffd6ff
> color (#!2 & sel) #35ffd5ff
> color (#!2 & sel) #35ffd4ff
> color (#!2 & sel) #35ffd3ff
> color (#!2 & sel) #35ffcfff
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> color (#!2 & sel) #34ffcdff
> color (#!2 & sel) #34ffccff
> color (#!2 & sel) #34ffcbff
> color (#!2 & sel) #34ffcaff
> color (#!2 & sel) #33ffc7ff
> color (#!2 & sel) #33ffb7ff
> color (#!2 & sel) #30ffa7ff
> color (#!2 & sel) #2bff8bff
> color (#!2 & sel) #2aff84ff
> color (#!2 & sel) #2aff80ff
> color (#!2 & sel) #2aff81ff
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> color (#!2 & sel) #47ffacff
> color (#!2 & sel) #54ffb6ff
> color (#!2 & sel) #58ffb8ff
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> color (#!2 & sel) #5bffb9ff
> color (#!2 & sel) #5dffbbff
> color (#!2 & sel) #5effbbff
> color (#!2 & sel) #60ffbdff
> color (#!2 & sel) #63ffc0ff
> color (#!2 & sel) #67ffc4ff
> color (#!2 & sel) #6dffc9ff
> color (#!2 & sel) #6fffcaff
> color (#!2 & sel) #71ffccff
> color (#!2 & sel) #73ffceff
> color (#!2 & sel) #75ffcfff
> color (#!2 & sel) #77ffd1ff
> color (#!2 & sel) #7affd4ff
> color (#!2 & sel) #7cffd5ff
> color (#!2 & sel) #7fffd7ff
> color (#!2 & sel) #93ffdeff
> color (#!2 & sel) #a4ffe3ff
> color (#!2 & sel) #a7ffe3ff
> color (#!2 & sel) #b2ffe3ff
> color (#!2 & sel) #b4ffe4ff
> color (#!2 & sel) #b4ffe3ff
> color (#!2 & sel) #b5ffe4ff
[Repeated 1 time(s)]
> color (#!2 & sel) #b6ffe4ff
> color (#!2 & sel) #b7ffd2ff
> color (#!2 & sel) #b4ffc7ff
> color (#!2 & sel) #a7ffa9ff
> color (#!2 & sel) #a7ffa5ff
> color (#!2 & sel) #a5ff94ff
> color (#!2 & sel) #a4ff8eff
> color (#!2 & sel) #a3ff8bff
> color (#!2 & sel) #a3ff8cff
> color (#!2 & sel) #a4ff8cff
> color (#!2 & sel) #a3ff91ff
> color (#!2 & sel) #a5ff99ff
> color (#!2 & sel) #a8ffaaff
> color (#!2 & sel) #baffcbff
> color (#!2 & sel) #bdffd3ff
> color (#!2 & sel) #c3ffddff
> color (#!2 & sel) #c5ffe0ff
> color (#!2 & sel) #ccfff4ff
> color (#!2 & sel) #cdfff7ff
> color (#!2 & sel) #cdfffdff
> color (#!2 & sel) #cefdffff
> color (#!2 & sel) #cefcffff
[Repeated 1 time(s)]
> color (#!2 & sel) #cdfbffff
[Repeated 1 time(s)]
> color (#!2 & sel) #ccfaffff
> color (#!2 & sel) #cbfaffff
> color (#!2 & sel) #c1f9ffff
> color (#!2 & sel) #b7f7ffff
> color (#!2 & sel) #adf5ffff
> color (#!2 & sel) #97f1ffff
> color (#!2 & sel) #7aedffff
> color (#!2 & sel) #74edffff
> color (#!2 & sel) #60e6ffff
> color (#!2 & sel) #50e3ffff
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> color (#!2 & sel) #45deffff
> color (#!2 & sel) #44deffff
> color (#!2 & sel) #43deffff
> color (#!2 & sel) #42deffff
[Repeated 1 time(s)]
> color (#!2 & sel) #41deffff
> color (#!2 & sel) #3edeffff
> color (#!2 & sel) #3adeffff
> color (#!2 & sel) #36deffff
> color (#!2 & sel) #35deffff
> color (#!2 & sel) #34ddffff
> color (#!2 & sel) #33ddffff
> color (#!2 & sel) #32ddffff
[Repeated 1 time(s)]
> color (#!2 & sel) #30ddffff
> color (#!2 & sel) #2bdfffff
> color (#!2 & sel) #28dfffff
> color (#!2 & sel) #28e0ffff
> color (#!2 & sel) #26e0ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #26e1ffff
> color (#!2 & sel) #26e2ffff
> color (#!2 & sel) #25e2ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #26e3ffff
> color (#!2 & sel) #26e4ffff
> color (#!2 & sel) #25e5ffff
> color (#!2 & sel) #25e6ffff
> color (#!2 & sel) #26eaffff
> color (#!2 & sel) #25ecffff
> color (#!2 & sel) #25eeffff
> color (#!2 & sel) #26f3ffff
> color (#!2 & sel) #26fbffff
> color (#!2 & sel) #26fcffff
> color (#!2 & sel) #26fffeff
> color (#!2 & sel) #26fffdff
> color (#!2 & sel) #26fffcff
> color (#!2 & sel) #26fffbff
> color (#!2 & sel) #26fffaff
> color (#!2 & sel) #26fff8ff
> color (#!2 & sel) #26fff6ff
> color (#!2 & sel) #26fff5ff
> color (#!2 & sel) #25fff3ff
> color (#!2 & sel) #25fff2ff
> color (#!2 & sel) #25fff1ff
[Repeated 1 time(s)]
> color (#!2 & sel) #25fff0ff
> color (#!2 & sel) #25ffefff
[Repeated 1 time(s)]
> color (#!2 & sel) #25ffeeff
> color (#!2 & sel) #25ffedff
> color (#!2 & sel) #24ffecff
> color (#!2 & sel) #24ffebff
[Repeated 1 time(s)]
> color (#!2 & sel) #24ffeaff
> color (#!2 & sel) #1cffd8ff
> color (#!2 & sel) #1bffd6ff
> color (#!2 & sel) #1affd3ff
> color (#!2 & sel) #18ffd1ff
> color (#!2 & sel) #17ffcfff
> color (#!2 & sel) #15ffccff
> color (#!2 & sel) #14ffcbff
> color (#!2 & sel) #14ffcaff
[Repeated 1 time(s)]
> color (#!2 & sel) #13ffc9ff
[Repeated 1 time(s)]
> color (#!2 & sel) #12ffcaff
> color (#!2 & sel) #11ffccff
> color (#!2 & sel) #11ffcdff
> color (#!2 & sel) #10ffceff
> color (#!2 & sel) #0fffcfff
> color (#!2 & sel) #0cffd1ff
> color (#!2 & sel) #0affd2ff
> color (#!2 & sel) #09ffd2ff
> color (#!2 & sel) #05ffd3ff
> color (#!2 & sel) #01ffd4ff
[Repeated 1 time(s)]
> color (#!2 & sel) #00ffd4ff
> color (#!2 & sel) #00ffd5ff
[Repeated 2 time(s)]
> color (#!2 & sel) #00ffd6ff
> color (#!2 & sel) #00ffd7ff
[Repeated 2 time(s)]
> color (#!2 & sel) #00ffd8ff
[Repeated 2 time(s)]
> color (#!2 & sel) #00ffd9ff
> color (#!2 & sel) #00ffdcff
> color (#!2 & sel) #00ffdfff
> color (#!2 & sel) #00fff3ff
> color (#!2 & sel) #00fcffff
> color (#!2 & sel) #00efffff
> color (#!2 & sel) #00e6ffff
> color (#!2 & sel) #00e3ffff
> color (#!2 & sel) #00e0ffff
> color (#!2 & sel) #00ddffff
> color (#!2 & sel) #00daffff
> color (#!2 & sel) #00ddffff
> color (#!2 & sel) #00e9ffff
> color (#!2 & sel) #00fffcff
> color (#!2 & sel) #00ffe6ff
> color (#!2 & sel) #00ffd6ff
> color (#!2 & sel) #00ffbaff
> color (#!2 & sel) #00ffa6ff
> color (#!2 & sel) #00ffa3ff
> color (#!2 & sel) #00ffa0ff
> color (#!2 & sel) #00ff9fff
> color (#!2 & sel) #00ff9cff
> color (#!2 & sel) #00ff99ff
> color (#!2 & sel) #00ff95ff
> color (#!2 & sel) #00ff92ff
> color (#!2 & sel) #01ff91ff
> color (#!2 & sel) #12ff8aff
> color (#!2 & sel) #3bff87ff
> color (#!2 & sel) #6aff7aff
> color (#!2 & sel) #88ff74ff
> color (#!2 & sel) #9bff73ff
> color (#!2 & sel) #9dff72ff
> color (#!2 & sel) #9eff71ff
> color (#!2 & sel) #9eff70ff
> color (#!2 & sel) #9fff70ff
[Repeated 1 time(s)]
> color (#!2 & sel) #abff70ff
> color (#!2 & sel) #b9ff74ff
> color (#!2 & sel) #bdff6eff
> color (#!2 & sel) #d4ff6bff
> color (#!2 & sel) #d9ff6aff
> color (#!2 & sel) #dbff68ff
> color (#!2 & sel) #dcff68ff
> color (#!2 & sel) #dcff69ff
[Repeated 1 time(s)]
> color (#!2 & sel) #dcff6bff
> color (#!2 & sel) #ddff6fff
> color (#!2 & sel) #e2ff7cff
> color (#!2 & sel) #e3ff82ff
> color (#!2 & sel) #e5ff85ff
> color (#!2 & sel) #e6ff88ff
> color (#!2 & sel) #e6ff89ff
> color (#!2 & sel) #e7ff89ff
> color (#!2 & sel) #e7ff8aff
> color (#!2 & sel) #e7ff8bff
> color (#!2 & sel) #eaff91ff
> color (#!2 & sel) #faffaeff
> color (#!2 & sel) #fffebaff
> color (#!2 & sel) #ffe4ceff
> color (#!2 & sel) #ffdfceff
> color (#!2 & sel) #ffdeccff
> color (#!2 & sel) #ffddccff
> color (#!2 & sel) #ffddcbff
> color (#!2 & sel) #ffddcaff
> color (#!2 & sel) #ffddc9ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ffdcc8ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ffdbc6ff
> color (#!2 & sel) #ffc9b8ff
> color (#!2 & sel) #ffc1b3ff
> color (#!2 & sel) #ffb1a7ff
> color (#!2 & sel) #ff9c98ff
> color (#!2 & sel) #ff8f8eff
> color (#!2 & sel) #ff888aff
> color (#!2 & sel) #ff757fff
> color (#!2 & sel) #ff6477ff
> color (#!2 & sel) #ff5e73ff
> color (#!2 & sel) #ff5069ff
> color (#!2 & sel) #ff4d66ff
> color (#!2 & sel) #ff4b65ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ff4a64ff
> color (#!2 & sel) #ff4a63ff
> color (#!2 & sel) #ff4a62ff
> color (#!2 & sel) #ff4961ff
> color (#!2 & sel) #ff4a62ff
> color (#!2 & sel) #ff4a63ff
> color (#!2 & sel) #ff4b63ff
> color (#!2 & sel) #ff4c64ff
> color (#!2 & sel) #ff4d64ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ff4f65ff
> color (#!2 & sel) #ff5065ff
> color (#!2 & sel) #ff5165ff
> color (#!2 & sel) #ff5466ff
> color (#!2 & sel) #ff5566ff
> color (#!2 & sel) #ff5866ff
> color (#!2 & sel) #ff5f67ff
> color (#!2 & sel) #ff6467ff
> color (#!2 & sel) #ff6e6bff
> color (#!2 & sel) #ff736eff
> color (#!2 & sel) #ff7972ff
> color (#!2 & sel) #ff7b73ff
> color (#!2 & sel) #ff7c73ff
> color (#!2 & sel) #ff8075ff
> color (#!2 & sel) #ff8377ff
> color (#!2 & sel) #ff8778ff
> color (#!2 & sel) #ff897aff
> color (#!2 & sel) #ff8b7aff
> color (#!2 & sel) #ff8e7bff
> color (#!2 & sel) #ff997dff
> color (#!2 & sel) #ff9d7eff
> color (#!2 & sel) #ff9f7eff
> color (#!2 & sel) #ffa17eff
> color (#!2 & sel) #ffa27dff
> color (#!2 & sel) #ffa37dff
> color (#!2 & sel) #ffa47eff
> color (#!2 & sel) #ffa37eff
> color (#!2 & sel) #ffa47fff
> color (#!2 & sel) #ff9d8aff
> color (#!2 & sel) #ff9b91ff
> color (#!2 & sel) #ff999eff
> color (#!2 & sel) #ff9baaff
> color (#!2 & sel) #ff9cb4ff
> color (#!2 & sel) #ff9db8ff
> color (#!2 & sel) #ff9dbbff
> color (#!2 & sel) #ff9dbdff
> color (#!2 & sel) #ff9cbeff
> color (#!2 & sel) #ff9cc1ff
> color (#!2 & sel) #ff9bc2ff
> color (#!2 & sel) #ff9bc3ff
> color (#!2 & sel) #ff9ac5ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ff9ac7ff
> color (#!2 & sel) #ff99c9ff
> color (#!2 & sel) #ff99caff
> color (#!2 & sel) #ff99cbff
> color (#!2 & sel) #ff99ceff
> color (#!2 & sel) #ff9ad1ff
> color (#!2 & sel) #ff9ad3ff
> color (#!2 & sel) #ff9be0ff
> color (#!2 & sel) #ff9ce3ff
> color (#!2 & sel) #ff9ce4ff
> color (#!2 & sel) #ff9de6ff
> color (#!2 & sel) #ff9de7ff
> color (#!2 & sel) #ff9debff
> color (#!2 & sel) #ff9dedff
> color (#!2 & sel) #ff9defff
> color (#!2 & sel) #ff9ef3ff
> color (#!2 & sel) #ff9df7ff
> color (#!2 & sel) #ff9df8ff
> color (#!2 & sel) #ff9dfaff
> color (#!2 & sel) #fc9affff
> color (#!2 & sel) #f998ffff
> color (#!2 & sel) #f896ffff
> color (#!2 & sel) #ef8affff
> color (#!2 & sel) #ec85ffff
> color (#!2 & sel) #eb83ffff
> color (#!2 & sel) #eb6dffff
> color (#!2 & sel) #eb6affff
> color (#!2 & sel) #ec63ffff
> color (#!2 & sel) #ef54ffff
> color (#!2 & sel) #f050ffff
> color (#!2 & sel) #f04effff
> color (#!2 & sel) #f14cffff
> color (#!2 & sel) #f24affff
[Repeated 1 time(s)]
> color (#!2 & sel) #f249ffff
> color (#!2 & sel) #f248ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #f247ffff
> color (#!2 & sel) #f146ffff
[Repeated 2 time(s)]
> color (#!2 & sel) #ef47ffff
[Repeated 1 time(s)]
> color (#!2 & sel) #e94bffff
> color (#!2 & sel) #da53ffff
> color (#!2 & sel) #d555ffff
> color (#!2 & sel) #d356ffff
> color (#!2 & sel) #d257ffff
> color (#!2 & sel) #d057ffff
> color (#!2 & sel) #ce59ffff
> color (#!2 & sel) #c95affff
> color (#!2 & sel) #c75bffff
> color (#!2 & sel) #c35cffff
> color (#!2 & sel) #c35dffff
> color (#!2 & sel) #c25dffff
[Repeated 1 time(s)]
> color (#!2 & sel) #c25effff
> color (#!2 & sel) #c15effff
[Repeated 1 time(s)]
> color (#!2 & sel) #c366ffff
> color (#!2 & sel) #c670ffff
> color (#!2 & sel) #d490ffff
> color (#!2 & sel) #e1aaffff
> color (#!2 & sel) #ffd5ffff
> color (#!2 & sel) #ffe9d6ff
> color (#!2 & sel) #fff3bbff
> color (#!2 & sel) #fffd8bff
> color (#!2 & sel) #f9ff6aff
> color (#!2 & sel) #f6ff61ff
> color (#!2 & sel) #f5ff57ff
> color (#!2 & sel) #f4ff56ff
> color (#!2 & sel) #f4ff55ff
> color (#!2 & sel) #f4ff54ff
> color (#!2 & sel) #f3ff52ff
> color (#!2 & sel) #f4ff4eff
> color (#!2 & sel) #f4ff4bff
> color (#!2 & sel) #f4ff4aff
> color (#!2 & sel) #f4ff49ff
[Repeated 1 time(s)]
> color (#!2 & sel) #f3ff48ff
> color (#!2 & sel) #f3ff47ff
> color (#!2 & sel) #f1ff45ff
> color (#!2 & sel) #f0ff44ff
> color (#!2 & sel) #edff43ff
[Repeated 1 time(s)]
> color (#!2 & sel) #ecff42ff
> color (#!2 & sel) #ebff42ff
> color (#!2 & sel) #e8ff42ff
> color (#!2 & sel) #e7ff41ff
> color (#!2 & sel) #e5ff42ff
> color (#!2 & sel) #e4ff41ff
> color (#!2 & sel) #e3ff42ff
> color (#!2 & sel) #e2ff42ff
> color (#!2 & sel) #deff42ff
> color (#!2 & sel) #dcff43ff
> color (#!2 & sel) #ceff47ff
> color (#!2 & sel) #c3ff4aff
> color (#!2 & sel) #b0ff54ff
> color (#!2 & sel) #abff56ff
> color (#!2 & sel) #a0ff5dff
[Repeated 1 time(s)]
> color (#!2 & sel) #a1ff5fff
> color (#!2 & sel) #a2ff65ff
> color (#!2 & sel) #a4ff6bff
> color (#!2 & sel) #a4ff70ff
> color (#!2 & sel) #a4ff72ff
> color (#!2 & sel) #a5ff76ff
> color (#!2 & sel) #a5ff78ff
> color (#!2 & sel) #a4ff78ff
> color (#!2 & sel) #a4ff79ff
> color (#!2 & sel) #a4ff7aff
> color (#!2 & sel) #a3ff7dff
> color (#!2 & sel) #a2ff82ff
> color (#!2 & sel) #a2ff83ff
> color (#!2 & sel) #a2ff84ff
> color (#!2 & sel) #a2ff83ff
[Repeated 1 time(s)]
> color (#!2 & sel) #a3ff81ff
> color (#!2 & sel) #a9ff71ff
> color (#!2 & sel) #b0ff59ff
> color (#!2 & sel) #b7ff49ff
> color (#!2 & sel) #b9ff40ff
> color (#!2 & sel) #b9ff3dff
> color (#!2 & sel) #b9ff3bff
> color (#!2 & sel) #b9ff39ff
> color (#!2 & sel) #b9ff38ff
> color (#!2 & sel) #b9ff35ff
> color (#!2 & sel) #b9ff33ff
> color (#!2 & sel) #b9ff32ff
> color (#!2 & sel) #b8ff2eff
> color (#!2 & sel) #b7ff2cff
> color (#!2 & sel) #b6ff2bff
> color (#!2 & sel) #b7ff2bff
> color (#!2 & sel) #b6ff2bff
> color (#!2 & sel) #b1ff2eff
> color (#!2 & sel) #aaff31ff
> color (#!2 & sel) #93ff3aff
> color (#!2 & sel) #82ff3dff
> color (#!2 & sel) #70ff3dff
> color (#!2 & sel) #6aff3fff
> color (#!2 & sel) #69ff3eff
[Repeated 1 time(s)]
> color (#!2 & sel) #68ff3eff
> color (#!2 & sel) #5bff38ff
> color (#!2 & sel) #4fff32ff
> color (#!2 & sel) #1dff22ff
> color (#!2 & sel) #03ff2aff
> color (#!2 & sel) #00ff3eff
> color (#!2 & sel) #00ff42ff
> color (#!2 & sel) #00ff4dff
> color (#!2 & sel) #01ff6eff
> color (#!2 & sel) #08ff7cff
> color (#!2 & sel) #0cff8dff
> color (#!2 & sel) #13ffa8ff
> color (#!2 & sel) #13ffb4ff
> color (#!2 & sel) #13ffb9ff
> color (#!2 & sel) #13ffbaff
> color (#!2 & sel) #13ffbbff
> color (#!2 & sel) #12ffbdff
> color (#!2 & sel) #12ffbeff
> color (#!2 & sel) #12ffbfff
> color (#!2 & sel) #10ffc1ff
> color (#!2 & sel) #09ffc8ff
> color (#!2 & sel) #05ffd0ff
> color (#!2 & sel) #00ffddff
> color (#!2 & sel) #00fff9ff
> color (#!2 & sel) #00fffcff
> color (#!2 & sel) #00ffffff
> color (#!2 & sel) #00fcffff
> color (#!2 & sel) #00f9ffff
> color (#!2 & sel) #00f3ffff
> color (#!2 & sel) #00ecffff
> color (#!2 & sel) #00e9ffff
> color (#!2 & sel) #00e6ffff
> color (#!2 & sel) #00e3ffff
> color (#!2 & sel) #00e0ffff
> color (#!2 & sel) #00ddffff
> color (#!2 & sel) #00d9ffff
> color (#!2 & sel) #00d6ffff
> color (#!2 & sel) #00d3ffff
> color (#!2 & sel) #00d0ffff
> color (#!2 & sel) #00cdffff
> color (#!2 & sel) #00c3ffff
> color (#!2 & sel) #06afffff
> color (#!2 & sel) #22aaffff
> color (#!2 & sel) #28aaffff
> color (#!2 & sel) #2daaffff
> color (#!2 & sel) #2ea9ffff
> color (#!2 & sel) #2fa6ffff
> color (#!2 & sel) #32a0ffff
> color (#!2 & sel) #359fffff
> color (#!2 & sel) #379cffff
[Repeated 1 time(s)]
> color (#!2 & sel) #399affff
> color (#!2 & sel) #3999ffff
> color (#!2 & sel) #3a9affff
[Repeated 1 time(s)]
> color (#!2 & sel) #41a0ffff
> color (#!2 & sel) #44a3ffff
> color (#!2 & sel) #5fb4ffff
> color (#!2 & sel) #83ccffff
> color (#!2 & sel) #96d6ffff
> color (#!2 & sel) #aee2ffff
> color (#!2 & sel) #b1e4ffff
> color (#!2 & sel) #b2e5ffff
> color (#!2 & sel) #b4e7ffff
> color (#!2 & sel) #b5e8ffff
> color (#!2 & sel) #b7e9ffff
> color (#!2 & sel) #b8eaffff
> color (#!2 & sel) #b9ebffff
> color (#!2 & sel) #baedffff
> color (#!2 & sel) #c6f8ffff
> color (#!2 & sel) #c9fcffff
> color (#!2 & sel) #cafeffff
> color (#!2 & sel) #cbfffeff
> color (#!2 & sel) #ccfff6ff
> color (#!2 & sel) #cbfff2ff
> color (#!2 & sel) #cbfff3ff
[Repeated 2 time(s)]
> color (#!2 & sel) #cafff4ff
> color (#!2 & sel) #cbfff5ff
> color (#!2 & sel) #cafff6ff
> color (#!2 & sel) #c9fff6ff
> color (#!2 & sel) #cafff7ff
> color (#!2 & sel) #c9fff7ff
> color (#!2 & sel) #c8fff7ff
> color (#!2 & sel) #c7fff7ff
> color (#!2 & sel) #bbfff7ff
> color (#!2 & sel) #b5fff7ff
> color (#!2 & sel) #9efff5ff
> color (#!2 & sel) #95fff5ff
> color (#!2 & sel) #94fff5ff
[Repeated 1 time(s)]
> color (#!2 & sel) #94fff4ff
> color (#!2 & sel) #93fff3ff
> color (#!2 & sel) #92fff3ff
> color (#!2 & sel) #92fff2ff
> color (#!2 & sel) #91fff1ff
[Repeated 1 time(s)]
> color (#!2 & sel) #90fff0ff
> color (#!2 & sel) #90ffefff
[Repeated 2 time(s)]
> color (#!2 & sel) #8fffefff
> color (#!2 & sel) #8fffeeff
> color (#!2 & sel) #8effeeff
> color (#!2 & sel) #8effedff
[Repeated 1 time(s)]
> color (#!2 & sel) #8dffedff
> color (#!2 & sel) #8dffecff
> color (#!2 & sel) #8dffebff
> color (#!2 & sel) #8cffebff
> color (#!2 & sel) #8bffeaff
[Repeated 2 time(s)]
> color (#!2 & sel) #8affe9ff
[Repeated 1 time(s)]
> color (#!2 & sel) #8affe8ff
> color (#!2 & sel) #89ffe8ff
> color (#!2 & sel) #87ffe7ff
> color (#!2 & sel) #87ffe6ff
> color (#!2 & sel) #87ffe4ff
> color (#!2 & sel) #86ffe3ff
> color (#!2 & sel) #85ffe0ff
> color (#!2 & sel) #83ffddff
> color (#!2 & sel) #82ffdcff
[Repeated 1 time(s)]
> color (#!2 & sel) #81ffdbff
> color (#!2 & sel) #81ffdaff
[Repeated 1 time(s)]
> color (#!2 & sel) #80ffd9ff
> color (#!2 & sel) #80ffd8ff
> color (#!2 & sel) #80ffd9ff
> color (#!2 & sel) #81ffdaff
> color (#!2 & sel) #82ffe5ff
> color (#!2 & sel) #82ffeeff
> color (#!2 & sel) #82fff5ff
> color (#!2 & sel) #82fff9ff
> color (#!2 & sel) #82fffcff
> color (#!2 & sel) #82fffeff
> color (#!2 & sel) #82ffffff
> color (#!2 & sel) #82feffff
> color (#!2 & sel) #82fdffff
> color (#!2 & sel) #82fcffff
> color (#!2 & sel) #82faffff
> color (#!2 & sel) #82f9ffff
> color (#!2 & sel) #82f8ffff
> color (#!2 & sel) #82f9ffff
> color (#!2 & sel) #82faffff
[Repeated 1 time(s)]
> color (#!2 & sel) #83faffff
> color (#!2 & sel) #83fbffff
> color (#!2 & sel) #84fbffff
> color (#!2 & sel) #85fcffff
> color (#!2 & sel) #86fcffff
> color (#!2 & sel) #89fdffff
> color (#!2 & sel) #8afdffff
> color (#!2 & sel) #8dffffff
[Repeated 1 time(s)]
> color (#!2 & sel) #8fffffff
> color (#!2 & sel) #90ffffff
> color (#!2 & sel) #91ffffff
> color (#!2 & sel) #93ffffff
> color (#!2 & sel) #9affffff
> color (#!2 & sel) #a0ffffff
> color (#!2 & sel) #a2ffffff
[Repeated 2 time(s)]
> color (#!2 & sel) #a1fffeff
> color (#!2 & sel) #9ffffdff
> color (#!2 & sel) #9cfffcff
> color (#!2 & sel) #9afffbff
> color (#!2 & sel) #98fffaff
> color (#!2 & sel) #97fffaff
> color (#!2 & sel) #96fff8ff
> color (#!2 & sel) #95fff8ff
> color (#!2 & sel) #92fff7ff
> color (#!2 & sel) #91fff7ff
> select #2/C
1205 atoms, 1216 bonds, 162 residues, 1 model selected
> color sel #89fff2ff
> color sel #8afff2ff
> color sel #8cfff1ff
> color sel #99ffefff
> color sel #a7ffe8ff
> color sel #bdffe3ff
> color sel #c9ffd9ff
> color sel #dfffcdff
> color sel #f6ffbdff
> color sel #fbffb1ff
> color sel #ffffa8ff
> color sel #fffea2ff
> color sel #fffea0ff
> color sel #fffd9cff
> color sel #fffd9aff
> color sel #fffd99ff
> color sel #fffd98ff
> color sel #fffe97ff
> color sel #fffe96ff
> color sel #fffe94ff
[Repeated 1 time(s)]
> color sel #fffe92ff
> color sel #ffff8fff
> color sel #ffff8eff
> color sel #fdff88ff
> color sel #fbff82ff
> color sel #fbff7fff
> color sel #f5ff6cff
> color sel #f3ff66ff
> color sel #f2ff63ff
> color sel #f0ff60ff
> color sel #f0ff5dff
> color sel #eeff5bff
> color sel #edff59ff
> color sel #edff58ff
> color sel #ecff57ff
> color sel #ecff56ff
> color sel #eaff54ff
> color sel #e9ff53ff
> color sel #e9ff52ff
> color sel #e8ff51ff
[Repeated 1 time(s)]
> color sel #e8ff50ff
> color sel #e7ff50ff
> color sel #e7ff4fff
> color sel #e6ff4eff
> color sel #e6ff4dff
> color sel #e6ff4cff
> color sel #e5ff4cff
> color sel #e5ff4bff
[Repeated 1 time(s)]
> color sel #e4ff4aff
> color sel #e4ff47ff
> color sel #e3ff40ff
> color sel #e4ff3eff
> color sel #e4ff3dff
> color sel #e4ff3cff
[Repeated 2 time(s)]
> color sel #e4ff3dff
> color sel #e4ff3fff
> color sel #e4ff42ff
> color sel #e5ff46ff
> color sel #e7ff4dff
> color sel #eaff61ff
> color sel #e9ff7dff
> color sel #ebff9aff
> color sel #ecffafff
> color sel #ecffccff
> color sel #eeffebff
> color sel #effbffff
> color sel #d9dfffff
> color sel #d3d7ffff
> color sel #cdcfffff
> color sel #cccfffff
> color sel #c9cbffff
> color sel #c8c9ffff
> color sel #c8c8ffff
> color sel #c7c8ffff
> color sel #c7c7ffff
> color sel #c6c6ffff
> color sel #c6c5ffff
> color sel #c4c2ffff
> color sel #afa8ffff
> color sel #a79bffff
> color sel #9888ffff
> color sel #8773ffff
> color sel #775cffff
> color sel #6c4fffff
> color sel #6643ffff
> color sel #6440ffff
> color sel #6341ffff
> color sel #6441ffff
> color sel #674fffff
> color sel #6656ffff
> color sel #6760ffff
> color sel #6764ffff
> color sel #6b77ffff
> color sel #6c79ffff
> color sel #6d7dffff
> color sel #6d86ffff
> color sel #6d87ffff
> color sel #6d88ffff
> color sel #6d89ffff
> color sel #6d8affff
> color sel #6d8bffff
> color sel #6e8cffff
> color sel #6e8effff
> color sel #7096ffff
> color sel #7db1ffff
> color sel #82bbffff
> color sel #84beffff
> color sel #87c5ffff
> color sel #87c6ffff
> color sel #88c7ffff
> color sel #87c7ffff
> color sel #88c8ffff
> color sel #88c9ffff
[Repeated 1 time(s)]
> color sel #86c9ffff
> color sel #85c9ffff
> color sel #84caffff
[Repeated 1 time(s)]
> color sel #84ccffff
> color sel #87d2ffff
> color sel #89d8ffff
> color sel #8adbffff
> color sel #8addffff
[Repeated 1 time(s)]
> color sel #8adfffff
[Repeated 1 time(s)]
> color sel #89e2ffff
> color sel #89e4ffff
> color sel #86e7ffff
> color sel #80edffff
> color sel #7cf1ffff
> color sel #75f7ffff
> color sel #6bfcffff
> color sel #68fdffff
> color sel #5ffffcff
> color sel #5cfffbff
> color sel #58fffaff
> color sel #58fff9ff
> color sel #58fff8ff
[Repeated 1 time(s)]
> color sel #58fff7ff
> color sel #58fff6ff
[Repeated 1 time(s)]
> color sel #59fff5ff
> color sel #5cffe9ff
> color sel #60ffcfff
> color sel #61ffc9ff
> color sel #60ffb5ff
> color sel #5dffabff
> color sel #56ff91ff
> color sel #50ff79ff
> color sel #4cff71ff
> color sel #47ff63ff
> color sel #47ff62ff
[Repeated 1 time(s)]
> color sel #47ff61ff
> color sel #46ff60ff
> color sel #47ff57ff
> color sel #47ff53ff
> color sel #46ff4aff
> color sel #4aff45ff
> color sel #54ff44ff
> color sel #57ff3fff
> color sel #5aff3fff
> color sel #5dff39ff
> color sel #60ff34ff
> color sel #61ff2fff
> color sel #60ff2eff
> color sel #61ff2dff
> color sel #60ff2cff
> color sel #61ff2dff
> color sel #63ff2eff
> color sel #66ff2fff
> color sel #68ff30ff
> color sel #6bff30ff
> color sel #6cff31ff
> color sel #6dff31ff
[Repeated 1 time(s)]
> color sel #6eff32ff
> color sel #71ff33ff
> color sel #75ff35ff
> color sel #88ff3cff
> color sel #92ff3fff
> color sel #9eff45ff
> color sel #aaff4bff
> color sel #b8ff52ff
> color sel #c4ff57ff
> color sel #d1ff5dff
> color sel #e3ff65ff
> color sel #ecff67ff
> color sel #fbff6dff
> color sel #fff76dff
> color sel #fff66cff
> color sel #fff56dff
> color sel #fff56cff
> color sel #fff46cff
> color sel #fff36cff
> color sel #fff36bff
> color sel #fff26bff
> color sel #fff269ff
> color sel #fff168ff
> color sel #fff167ff
> color sel #fff066ff
> color sel #ffef65ff
[Repeated 1 time(s)]
> color sel #ffee65ff
> color sel #ffed65ff
> color sel #ffe363ff
> color sel #ffd562ff
> color sel #ffc75dff
> color sel #ffc05aff
> color sel #ffaf4fff
> color sel #ffae4eff
[Repeated 1 time(s)]
> color sel #ffae4dff
[Repeated 1 time(s)]
> color sel #ffaf4dff
> color sel #ffaf4cff
> color sel #ffaf4dff
[Repeated 2 time(s)]
> color sel #ffaf4eff
> color sel #ffaf4fff
> color sel #ffaf50ff
> color sel #ffaf51ff
> color sel #ffaf52ff
> color sel #ffaf53ff
> color sel #ffaf5aff
> color sel #ffaf5dff
> color sel #ffaf66ff
> color sel #ffae6bff
> color sel #ffae6eff
> color sel #ffad71ff
> color sel #ffad74ff
> color sel #ffac76ff
> color sel #ffac77ff
[Repeated 1 time(s)]
> color sel #ffab77ff
> color sel #ffac78ff
> color sel #ffac79ff
> color sel #ffad79ff
> color sel #ffbc87ff
> color sel #ffbe8aff
> color sel #ffc490ff
> color sel #ffd19aff
> color sel #ffd69fff
> color sel #ffd8a0ff
> color sel #ffd8a1ff
> color sel #ffd9a3ff
> color sel #ffdca7ff
> color sel #ffdda8ff
> color sel #ffdea9ff
> color sel #ffe0acff
> color sel #ffe1aeff
> color sel #ffe3b0ff
> color sel #ffe5b3ff
> color sel #ffe5b4ff
> color sel #ffe6b4ff
[Repeated 1 time(s)]
> color sel #ffe6b3ff
> color sel #ffe7b2ff
> color sel #ffe8b1ff
> color sel #ffe8b0ff
> color sel #ffe8aeff
> color sel #ffe9aeff
> color sel #ffe9acff
> color sel #ffe9aaff
> color sel #ffe9a7ff
> color sel #ffeaa4ff
> color sel #ffeaa2ff
> color sel #ffeaa0ff
[Repeated 1 time(s)]
> color sel #ffea9fff
[Repeated 1 time(s)]
> color sel #ffea9eff
[Repeated 1 time(s)]
> color sel #ffea9cff
> color sel #ffeb97ff
> color sel #ffeb94ff
> color sel #ffec94ff
> color sel #ffec93ff
> color sel #ffec92ff
> color sel #ffed8eff
> color sel #ffef88ff
> color sel #ffef85ff
> color sel #ffee7cff
> color sel #ffef75ff
> color sel #ffef6aff
> color sel #ffee68ff
> color sel #ffee5dff
> color sel #ffee5cff
> color sel #ffed58ff
[Repeated 1 time(s)]
> color sel #ffed56ff
> color sel #ffee55ff
> color sel #ffee54ff
> color sel #ffee53ff
> color sel #ffed53ff
> color sel #ffed52ff
> color sel #ffee52ff
> color sel #ffed51ff
> color sel #ffed50ff
> color sel #ffed4eff
> color sel #ffec4bff
> color sel #ffe73fff
> color sel #ffdc2aff
> color sel #ffd821ff
> color sel #ffd720ff
> color sel #ffd820ff
> color sel #ffd71fff
> color sel #ffd71eff
> color sel #ffd71cff
> color sel #ffd71aff
> color sel #ffd719ff
[Repeated 1 time(s)]
> color sel #ffd718ff
[Repeated 1 time(s)]
> color sel #ffd819ff
> color sel #ffdc1fff
> color sel #ffdd20ff
> color sel #ffe226ff
> color sel #ffe429ff
> color sel #ffe52bff
> color sel #ffe62dff
> color sel #ffe72eff
> color sel #ffe62eff
> color sel #ffe730ff
> color sel #ffea36ff
> color sel #fffc4aff
> color sel #fffe4dff
> color sel #f0ff55ff
> color sel #eeff57ff
> color sel #ebff58ff
[Repeated 1 time(s)]
> color sel #eaff58ff
> color sel #eaff59ff
> color sel #e9ff59ff
> color sel #e9ff5bff
> color sel #e8ff5cff
> color sel #e6ff62ff
> color sel #e5ff65ff
> color sel #e4ff67ff
> color sel #e3ff6dff
> color sel #e2ff6eff
> color sel #e3ff6fff
> color sel #e2ff70ff
[Repeated 1 time(s)]
> color sel #e2ff71ff
> color sel #f0ff7dff
> color sel #f3ff7eff
> color sel #f5ff81ff
> color sel #fbff88ff
> color sel #fffb8fff
> color sel #fff394ff
> color sel #ffed9bff
> color sel #ffe3a1ff
> color sel #ffdfa4ff
> color sel #ffd2a9ff
> color sel #ffc6aaff
> color sel #ffc2acff
> color sel #ffaba8ff
> color sel #ffa8a8ff
> color sel #ffa7a9ff
> color sel #ffa7acff
> color sel #ffa7adff
> color sel #ffa6adff
> color sel #ffa6aeff
[Repeated 1 time(s)]
> color sel #ffa6afff
[Repeated 1 time(s)]
> color sel #ffa5b0ff
> color sel #ffa6b1ff
> color sel #ffa7b5ff
> color sel #ffa7b8ff
> color sel #ffa7bbff
> color sel #ffa8beff
> color sel #ffa8c1ff
> color sel #ffa8c4ff
> color sel #ffa7caff
> color sel #ffa6caff
> color sel #ffa6ccff
[Repeated 1 time(s)]
> color sel #ffa6cdff
> color sel #ffa3cdff
> color sel #ffa1ccff
> color sel #ff9fccff
> color sel #ff96c8ff
> color sel #ff94c7ff
> color sel #ff96c7ff
[Repeated 1 time(s)]
> color sel #ff97c7ff
[Repeated 1 time(s)]
> color sel #ff98c7ff
> color sel #ff99c7ff
> color sel #ff9ac6ff
> color sel #ff9cc6ff
[Repeated 1 time(s)]
> color sel #ff9dc6ff
> color sel #ff9fc5ff
> color sel #ffa0c5ff
> color sel #ffa1c4ff
> color sel #ffa2c4ff
> color sel #ffa3c4ff
[Repeated 1 time(s)]
> color sel #ffa5c3ff
> color sel #ffa6c3ff
> color sel #ffa7c3ff
[Repeated 1 time(s)]
> color sel #ffa8c3ff
> color sel #ffa9c2ff
[Repeated 1 time(s)]
> color sel #ffaac2ff
> color sel #ffabc2ff
> color sel #ffabc1ff
> color sel #ffacc1ff
> color sel #ffadc0ff
> color sel #ffaebfff
> color sel #ffafbeff
[Repeated 1 time(s)]
> color sel #ffafbdff
> color sel #ffafbeff
> color sel #ffaebeff
[Repeated 1 time(s)]
> color sel #ffaebfff
[Repeated 1 time(s)]
> color sel #ffadc0ff
> color sel #ffadc2ff
> color sel #ffadc3ff
> color sel #ffadc5ff
> color sel #ffadc7ff
> color sel #ffadcaff
> color sel #ffaecdff
> color sel #ffafcfff
> color sel #ffb3e1ff
> color sel #ffb2e3ff
> color sel #ffb3e5ff
> color sel #ffb3e6ff
> color sel #ffb2e7ff
> color sel #ffb2e8ff
> color sel #ffb2e9ff
[Repeated 1 time(s)]
> color sel #ffb3eaff
[Repeated 2 time(s)]
> color sel #ffb4eaff
> color sel #ffb6ebff
> color sel #ffb8ebff
> color sel #ffbaebff
> color sel #ffbbecff
> color sel #ffbcecff
> color sel #ffbdedff
[Repeated 1 time(s)]
> color sel #ffbeeeff
> color sel #ffbeedff
> color sel #ffbfeeff
> color sel #ffc0efff
[Repeated 1 time(s)]
> color sel #ffc2f2ff
> color sel #ffc4f4ff
> color sel #ffc7f6ff
> color sel #ffc9f9ff
> color sel #ffcafaff
> color sel #ffcafbff
> color sel #ffccfcff
> color sel #ffccfdff
> color sel #ffcdfdff
> color sel #ffcdfcff
> color sel #ffcaf3ff
> color sel #ffc9efff
> color sel #ffc4e8ff
> color sel #ffc2e5ff
> color sel #ffbfe0ff
> color sel #ffbedfff
> color sel #ffbdddff
> color sel #ffbcdcff
> color sel #ffbadaff
> color sel #ffb9d9ff
> color sel #ffb8d8ff
> color sel #ffb7d7ff
> color sel #ffb6d6ff
> color sel #ffb5d5ff
> color sel #ffb4d4ff
> color sel #ffb4d3ff
> color sel #ffb3d3ff
> color sel #ffb3d2ff
> color sel #ffb1d1ff
> color sel #ffb0cfff
> color sel #ffafceff
> color sel #ffaecdff
> color sel #ffaccaff
[Repeated 1 time(s)]
> color sel #ffabc9ff
> color sel #ffabc8ff
> color sel #ffaac7ff
> color sel #ffa9c7ff
> color sel #ffa9c6ff
> color sel #ffa1bcff
> color sel #ff9eb8ff
> color sel #ff9cb5ff
> color sel #ff9ab4ff
> color sel #ff99b2ff
> color sel #ff98b1ff
> color sel #ff97afff
> color sel #ff96afff
> color sel #ff96adff
> color sel #ff95adff
> color sel #ff8a9dff
> color sel #ff8697ff
> color sel #ff8595ff
> color sel #ff8493ff
> color sel #ff8190ff
> color sel #ff808fff
> color sel #ff808eff
> color sel #ff7f8eff
> color sel #ff7e8eff
[Repeated 1 time(s)]
> color sel #ff7c8dff
> color sel #ff6b87ff
> color sel #ff6486ff
> color sel #ff5c83ff
> color sel #ff5a82ff
> color sel #ff5981ff
> color sel #ff5780ff
> color sel #ff5781ff
> color sel #ff5680ff
[Repeated 1 time(s)]
> color sel #ff5681ff
> color sel #ff4982ff
> color sel #ff4082ff
> color sel #ff3e82ff
> color sel #ff3a82ff
> color sel #ff3982ff
> color sel #ff3981ff
> color sel #ff3982ff
> color sel #ff3981ff
> color sel #ff3d7fff
> color sel #ff4a60ff
> color sel #ff4b52ff
> color sel #ff4d4bff
> color sel #ff4e4bff
> color sel #ff514bff
> color sel #ff544bff
> color sel #ff594aff
> color sel #ff5f47ff
> color sel #ff6345ff
> color sel #ff6841ff
> color sel #ff6e3dff
> color sel #ff7534ff
> color sel #ff7b2eff
> color sel #ff7b2dff
> color sel #ff7f27ff
> color sel #ff8025ff
> color sel #ff8123ff
> color sel #ff8221ff
> color sel #ff841cff
> color sel #ff851bff
> color sel #ff851aff
[Repeated 2 time(s)]
> color sel #ff841aff
> color sel #ff7d20ff
> color sel #ff7821ff
> color sel #ff6e24ff
> color sel #ff6b24ff
> color sel #ff6b25ff
> color sel #ff6a25ff
[Repeated 1 time(s)]
> color sel #ff6925ff
> color sel #ff6825ff
> color sel #ff6725ff
> color sel #ff6626ff
> color sel #ff6525ff
> color sel #ff6426ff
> color sel #ff6326ff
> color sel #ff6026ff
> color sel #ff5f26ff
> color sel #ff5c26ff
> color sel #ff5a26ff
> color sel #ff5926ff
> color sel #ff5a26ff
> color sel #ff5b26ff
> color sel #ff5d25ff
[Repeated 1 time(s)]
> color sel #ff5f25ff
> color sel #ff6025ff
[Repeated 1 time(s)]
> color sel #ff6124ff
[Repeated 1 time(s)]
> color sel #ff6224ff
[Repeated 1 time(s)]
> color sel #ff6323ff
> color sel #ff6423ff
[Repeated 1 time(s)]
> color sel #ff6523ff
> color sel #ff6623ff
[Repeated 1 time(s)]
> color sel #ff6723ff
> color sel #ff6822ff
> color sel #ff6922ff
> color sel #ff6a21ff
[Repeated 1 time(s)]
> color sel #ff6b21ff
[Repeated 1 time(s)]
> color sel #ff6c20ff
[Repeated 1 time(s)]
> color sel #ff6e20ff
> color sel #ff771fff
> color sel #ff791fff
> color sel #ff7a1fff
[Repeated 2 time(s)]
> color sel #ff791fff
> color sel #ff771eff
> color sel #ff761dff
> color sel #ff761eff
> color sel #ff751dff
> color sel #ff6718ff
> color sel #ff6317ff
> color sel #ff6216ff
> color sel #ff6116ff
> color sel #ff6016ff
> color sel #ff5f15ff
> color sel #ff5e16ff
[Repeated 1 time(s)]
> color sel #ff5d15ff
> color sel #ff5e15ff
[Repeated 1 time(s)]
> color sel #ff5f14ff
> color sel #ff6014ff
> color sel #ff6113ff
> color sel #ff6213ff
> color sel #ff6312ff
> color sel #ff6512ff
[Repeated 2 time(s)]
> color sel #ff6612ff
> color sel #ff6611ff
> color sel #ff6712ff
[Repeated 1 time(s)]
> color sel #ff6912ff
[Repeated 1 time(s)]
> color sel #ff6a12ff
> color sel #ff6b12ff
> color sel #ff6f12ff
> color sel #ff7112ff
> color sel #ff7413ff
> color sel #ff7713ff
> color sel #ff7b13ff
> color sel #ff7d14ff
> select clear
> select #2/C
1205 atoms, 1216 bonds, 162 residues, 1 model selected
> color sel #ff8210ff
> color sel #ff8310ff
> color sel #ff8412ff
> color sel #ff8513ff
> color sel #ff8615ff
> color sel #ff8616ff
> color sel #ff8618ff
> color sel #ff8719ff
> color sel #ff861aff
> color sel #ff871dff
> color sel #ff861dff
> color sel #ff861eff
[Repeated 1 time(s)]
> color sel #ff851eff
> color sel #ff791aff
> color sel #ff7518ff
> color sel #ff7218ff
> color sel #ff7018ff
> color sel #ff6615ff
> color sel #ff6214ff
> color sel #ff6114ff
> color sel #ff6014ff
> color sel #ff5f13ff
> color sel #ff5e14ff
[Repeated 1 time(s)]
> color sel #ff5e13ff
[Repeated 1 time(s)]
> color sel #ff5d10ff
> color sel #ff5e10ff
> color sel #ff5d0eff
[Repeated 1 time(s)]
> color sel #ff5d0dff
> color sel #ff5c0bff
> color sel #ff5d0bff
> color sel #ff5c0aff
> color sel #ff5c09ff
[Repeated 2 time(s)]
> color sel #ff5a06ff
> color sel #ff5905ff
> color sel #ff5500ff
> color sel #ff5701ff
> color sel #ff5802ff
> color sel #ff5a03ff
> color sel #ff5b04ff
> color sel #ff5d05ff
> color sel #ff5e06ff
> color sel #ff5f06ff
> color sel #ff5f07ff
> color sel #ff6006ff
> color sel #ff6107ff
> color sel #ff6407ff
> color sel #ff6607ff
> color sel #ff6707ff
> color sel #ff6807ff
> color sel #ff6a07ff
> color sel #ff6b07ff
[Repeated 1 time(s)]
> color sel #ff6c07ff
> color sel #ff6d07ff
> color sel #ff6e07ff
> color sel #ff7007ff
[Repeated 1 time(s)]
> color sel #ff7107ff
> color sel #ff7307ff
> color sel #ff7707ff
> color sel #ff7807ff
> color sel #ff7b07ff
> color sel #ff7c07ff
> color sel #ff7e06ff
> color sel #ff7f06ff
> color sel #ff8007ff
> color sel #ff8106ff
[Repeated 1 time(s)]
> color sel #ff8206ff
> color sel #ff8306ff
> color sel #ff8406ff
> color sel #ff8405ff
> color sel #ff8505ff
> color sel #ff8506ff
[Repeated 1 time(s)]
> color sel #ff8406ff
> color sel #ff8106ff
> color sel #ff7e07ff
> color sel #ff7c06ff
> color sel #ff7708ff
> color sel #ff7407ff
> color sel #ff7207ff
> color sel #ff7107ff
> color sel #ff6e06ff
> color sel #ff6d07ff
> color sel #ff6c06ff
> color sel #ff6b06ff
> color sel #ff6a06ff
[Repeated 1 time(s)]
> color sel #ff6805ff
> color sel #ff6706ff
> color sel #ff6506ff
> color sel #ff6305ff
> color sel #ff6005ff
> color sel #ff5f05ff
> color sel #ff5c05ff
> color sel #ff5b05ff
> color sel #ff5a05ff
[Repeated 1 time(s)]
> color sel #ff5905ff
[Repeated 1 time(s)]
> color sel #ff5805ff
[Repeated 1 time(s)]
> color sel #ff5806ff
> color sel #ff5a07ff
> color sel #ff6f1cff
> color sel #ff7b28ff
> color sel #ff9d46ff
> color sel #ffba62ff
> color sel #ffc56cff
> color sel #ffd379ff
> color sel #ffe789ff
> color sel #fff795ff
> color sel #ffff9aff
> color sel #faff9dff
> color sel #f9ff9eff
> color sel #f9ff9fff
> color sel #faff9fff
> color sel #fbffa0ff
> color sel #fffea4ff
> color sel #fffca5ff
> color sel #fffaa6ff
[Repeated 1 time(s)]
> color sel #fff9a7ff
> color sel #fff7a8ff
[Repeated 1 time(s)]
> color sel #fff6a8ff
[Repeated 1 time(s)]
> color sel #fff7a9ff
> color sel #fff6aaff
> color sel #fff7abff
> color sel #fff8aeff
> color sel #fffab5ff
> color sel #ecfff4ff
> color sel #eafff9ff
> color sel #e3feffff
> color sel #e1fbffff
> color sel #e0fbffff
> color sel #dffaffff
[Repeated 1 time(s)]
> color sel #dff9ffff
> color sel #def8ffff
> color sel #dcf2ffff
> color sel #dcf1ffff
> color sel #d6e7ffff
> color sel #d1e0ffff
> color sel #cad5ffff
> color sel #cad4ffff
> color sel #c9d3ffff
> color sel #c8d2ffff
> color sel #c9d3ffff
[Repeated 1 time(s)]
> color sel #cad4ffff
> color sel #cad5ffff
> color sel #cbd6ffff
> color sel #cbd7ffff
> color sel #ccd8ffff
> color sel #cdd9ffff
> color sel #cddbffff
> color sel #d5e8ffff
> color sel #d9f0ffff
> color sel #daf3ffff
> color sel #daf4ffff
> color sel #dbf7ffff
> color sel #dbf8ffff
> color sel #dcf9ffff
> color sel #dcfaffff
> color sel #dcfbffff
> color sel #dcfdffff
> color sel #dcfeffff
> color sel #dcffffff
> color sel #ddfffcff
> color sel #ddfff9ff
> color sel #ddfff6ff
> color sel #ddfff3ff
> color sel #ddfff0ff
> color sel #ddffe9ff
> color sel #dcffe8ff
> color sel #dcffe7ff
> color sel #dcffe5ff
> color sel #dcffe4ff
> color sel #dbffe4ff
> color sel #dbffe3ff
[Repeated 1 time(s)]
> color sel #dbffe2ff
[Repeated 1 time(s)]
> color sel #dbffe1ff
> color sel #deffdcff
> color sel #e5ffddff
> color sel #e8ffddff
> color sel #edffdcff
> color sel #f2ffdaff
> color sel #f2ffd9ff
> color sel #f3ffd9ff
> color sel #f3ffd8ff
> color sel #f6ffd4ff
> color sel #f7ffd3ff
> color sel #f8ffd0ff
> color sel #faffceff
> color sel #feffc8ff
> color sel #ffffc7ff
[Repeated 1 time(s)]
> color sel #fffec6ff
> color sel #fffec5ff
[Repeated 1 time(s)]
> color sel #fffec4ff
> color sel #fffdc4ff
> color sel #fffdc3ff
> color sel #fffcc3ff
> color sel #fffcc2ff
[Repeated 2 time(s)]
> color sel #fff9c0ff
> color sel #fff5bbff
> color sel #fff4baff
> color sel #fff2b7ff
> color sel #ffeeb2ff
> color sel #ffedb0ff
> color sel #ffecafff
> color sel #ffebafff
> color sel #ffe9acff
> color sel #ffe9abff
[Repeated 1 time(s)]
> color sel #ffe8aaff
[Repeated 1 time(s)]
> color sel #ffe8a9ff
> color sel #fff394ff
> color sel #fff68bff
> color sel #fbff6aff
> color sel #f7ff62ff
> color sel #f5ff5cff
> color sel #f4ff5bff
[Repeated 1 time(s)]
> color sel #f3ff5aff
> color sel #f3ff59ff
> color sel #f3ff52ff
> color sel #efff37ff
> color sel #f0ff2eff
> color sel #eeff15ff
> color sel #eeff12ff
> color sel #eeff0bff
> color sel #edff0aff
> color sel #eeff09ff
> color sel #edff09ff
> color sel #edff08ff
> color sel #edff07ff
> color sel #ecff07ff
> color sel #ecff06ff
> color sel #ebff06ff
> color sel #ebff07ff
> color sel #eaff07ff
[Repeated 1 time(s)]
> color sel #e9ff08ff
[Repeated 1 time(s)]
> color sel #e8ff08ff
[Repeated 1 time(s)]
> color sel #e7ff0aff
> color sel #e6ff0aff
> color sel #e3ff0bff
> color sel #d9ff10ff
> color sel #c7ff14ff
> color sel #bcff17ff
> color sel #abff1aff
> color sel #9fff1cff
> color sel #99ff1bff
> color sel #98ff1bff
> color sel #83ff18ff
> color sel #7aff18ff
> color sel #66ff16ff
> color sel #33ff08ff
> color sel #32ff08ff
> color sel #30ff07ff
> color sel #31ff08ff
> color sel #35ff0bff
> color sel #39ff0cff
> color sel #41ff11ff
> color sel #4aff16ff
> color sel #5bff20ff
> color sel #72ff2dff
> color sel #8eff39ff
> color sel #caff56ff
> color sel #fcff62ff
> color sel #ffdf61ff
> color sel #ffba58ff
> color sel #ffa450ff
> color sel #ff7a3eff
> color sel #ff6e38ff
> color sel #ff6133ff
> color sel #ff6032ff
> color sel #ff5f32ff
> color sel #ff6032ff
> color sel #ff6031ff
> color sel #ff672cff
> color sel #ff7028ff
> color sel #ff7c1aff
> color sel #ff8018ff
> color sel #ff8117ff
[Repeated 2 time(s)]
> color sel #ff7f18ff
> color sel #ff791fff
> color sel #ff7225ff
> color sel #ff603aff
> color sel #ff5042ff
> color sel #ff4850ff
> color sel #ff4f83ff
> color sel #ff50a2ff
> color sel #ff4fafff
> color sel #ff49c4ff
> color sel #ff43d2ff
> color sel #ff41deff
> color sel #ff40dfff
[Repeated 1 time(s)]
> color sel #ff40e0ff
> color sel #ff40e2ff
> color sel #ff46edff
> color sel #ff49feff
> color sel #e651ffff
> color sel #d156ffff
> color sel #bf57ffff
> color sel #b658ffff
[Repeated 1 time(s)]
> color sel #b558ffff
> color sel #b458ffff
> color sel #b15dffff
> color sel #ae60ffff
> color sel #ad60ffff
[Repeated 1 time(s)]
> color sel #ad61ffff
> color sel #ad62ffff
> color sel #ac63ffff
> color sel #aa71ffff
> color sel #ab78ffff
> color sel #ab7affff
> color sel #ab7bffff
> color sel #ac7cffff
[Repeated 1 time(s)]
> color sel #af7fffff
> color sel #b181ffff
> color sel #b886ffff
> color sel #c78fffff
> color sel #dc9cffff
> color sel #ffa8f1ff
> color sel #ffa0d0ff
> color sel #ff9bbeff
> color sel #ff8896ff
> color sel #ff8188ff
> color sel #ff7c76ff
> color sel #ff7d70ff
> color sel #ff7f69ff
> color sel #ff8363ff
> color sel #ff855fff
> color sel #ff885cff
> color sel #ff914fff
> color sel #ff924aff
> color sel #ff9a44ff
> color sel #ff9b42ff
> color sel #ff9d3dff
> color sel #ffa833ff
> color sel #ffab2cff
> color sel #ffac2cff
> color sel #ffad2bff
> color sel #ffad2aff
> color sel #ffae2bff
> color sel #ffae2aff
> color sel #ffb029ff
> color sel #ffb128ff
> color sel #ffb227ff
[Repeated 1 time(s)]
> color sel #ffb226ff
> color sel #ffb326ff
[Repeated 3 time(s)]
> color sel #ffaf27ff
[Repeated 1 time(s)]
> color sel #ffac27ff
> color sel #ffa928ff
> color sel #ffa729ff
> color sel #ffa42aff
> color sel #ff9f2cff
> color sel #ff9a2dff
> color sel #ff992eff
> color sel #ff982eff
> color sel #ff982fff
> color sel #ff972fff
[Repeated 1 time(s)]
> color sel #ff9730ff
> color sel #ff962fff
> color sel #ff9530ff
[Repeated 2 time(s)]
> color sel #ff9431ff
> color sel #ff9332ff
[Repeated 1 time(s)]
> color sel #ff9233ff
> color sel #ff9034ff
> color sel #ff8c37ff
> color sel #ff8442ff
> color sel #ff7947ff
> color sel #ff7249ff
> color sel #ff714aff
[Repeated 1 time(s)]
> color sel #ff714bff
> color sel #ff6f4aff
> color sel #ff6e4aff
> color sel #ff6447ff
> color sel #ff6347ff
> color sel #ff6247ff
> color sel #ff6147ff
> color sel #ff6046ff
> color sel #ff5f44ff
> color sel #ff6044ff
> color sel #ff5e42ff
[Repeated 1 time(s)]
> select clear
> select #1/B:96
12 atoms, 12 bonds, 1 residue, 1 model selected
> select clear
> select #1/A:197
7 atoms, 6 bonds, 1 residue, 1 model selected
> select clear
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15
> superimposition.cxs"
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15
> superimposition.cxs"
> ui tool show "Side View"
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15
> superimposition.cxs"
Cell requested for row 1 is out of bounds for table with 3 rows! Resizing
table model.
> hide #!2 models
> show #!2 models
> hide #!1 models
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #2/A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #2/A:61-73,78-91,110-121,129-141,144-155,164-175,202-205
647 atoms, 657 bonds, 80 residues, 1 model selected
> select #2/A:171
12 atoms, 12 bonds, 1 residue, 1 model selected
> select #2/A:170-171
18 atoms, 18 bonds, 2 residues, 1 model selected
> show sel target ab
> color sel purple
> select #2/A:61-73,78-91,110-121,129-141,144-155,164-175,202-205
647 atoms, 657 bonds, 80 residues, 1 model selected
> select #2/A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:174
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel target ab
> color sel purple
> select #2/A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel target ab
> color sel purple
> select add #1
3077 atoms, 3134 bonds, 4 pseudobonds, 407 residues, 4 models selected
> select subtract #1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1
3077 atoms, 3134 bonds, 4 pseudobonds, 407 residues, 4 models selected
> select subtract #1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2
3401 atoms, 3449 bonds, 2 pseudobonds, 462 residues, 3 models selected
> select subtract #2
Nothing selected
> select add #2
3401 atoms, 3449 bonds, 2 pseudobonds, 462 residues, 3 models selected
> select subtract #2
Nothing selected
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> set bgColor white
> hide #!2 models
> show #!2 models
> hide #!2 models
> select #1/A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:156
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1/A:170
14 atoms, 12 bonds, 2 residues, 1 model selected
> select add #1/A:171
26 atoms, 24 bonds, 3 residues, 1 model selected
> select add #1/A:174
35 atoms, 32 bonds, 4 residues, 1 model selected
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label sel text {0.name}{0.number} height 1.5
> label height 1
> label height 0.5
> label sel text {0.name}{0.number} height 1.5
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label sel color black5
Invalid "color" argument: Expected one of 'auto' or 'default' or a color
> label sel color black
> show #!2 models
> select add #1
3069 atoms, 3127 bonds, 4 pseudobonds, 406 residues, 3 models selected
> select subtract #1
Nothing selected
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15
> superimposition.cxs"
> toolshed show
> ui tool show "Blast Protein"
> save "/Users/leoliumcgill/Desktop/ISG15 structures/isg15 superimposition
> 2.cxs"
——— End of log from Wed May 21 19:51:14 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,3
Model Number: Z1A90001BLL/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.121.1
OS Loader Version: 11881.121.1
Software:
System Software Overview:
System Version: macOS 15.5 (24F74)
Kernel Version: Darwin 24.5.0
Time since boot: 18 hours, 6 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL S2721HS:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 75.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 6 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash moving window between screens |
comment:2 by , 6 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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