The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open C:\Users\aden6\Desktop\7HMS.cxs format session
Log from Wed May 21 16:33:51 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 7mhs
Summary of feedback from opening 7mhs fetched from pdb
---
warnings | Atom CG1 is not in the residue template for UNK /G:14
Atom CG1 is not in the residue template for UNK /G:16
Atom CG1 is not in the residue template for UNK /G:18
Atom CG1 is not in the residue template for UNK /G:20
notes | Fetching compressed mmCIF 7mhs from http://files.rcsb.org/download/7mhs.cif
Fetching CCD BEF from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/F/BEF/BEF.cif
7mhs title:
Structure of p97 (subunits A to E) with substrate engaged [more info...]
Chain information for 7mhs #1
---
Chain | Description | UniProt
A B C D E | Transitional endoplasmic reticulum ATPase | TERA_HUMAN 1-806
G | Unknown substrate |
Non-standard residues in 7mhs #1
---
ADP — adenosine-5'-diphosphate
BEF — beryllium trifluoride ion
MG — magnesium ion
> select /G:1@CB
1 atom, 1 residue, 1 model selected
> select :ADP
270 atoms, 290 bonds, 10 residues, 1 model selected
> select :BEF
32 atoms, 24 bonds, 8 residues, 1 model selected
> select :MG
8 atoms, 8 residues, 1 model selected
> select /G:2@CA
1 atom, 1 residue, 1 model selected
> select all
21148 atoms, 21481 bonds, 44 pseudobonds, 2700 residues, 3 models selected
> show sel atoms
> hide sel atoms
> show sel atoms
> show sel cartoons
> hide sel atoms
> ~select
Nothing selected
> color /a
> color /a cyna
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /a cyan
> color /b light blue
> color /c light green
> color /d orange
> color /g orange
> color /g red
> select /g
118 atoms, 117 bonds, 22 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 118 atom styles
> style sel sphere
Changed 118 atom styles
> style sel ball
Changed 118 atom styles
> style sel sphere
Changed 118 atom styles
> color sel byatoms
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color sel byatom
> ~select
Nothing selected
Alignment identifier is 1
Alignment identifier is 1/G
> select clear
> select /A,D:200-201/B:199-201/C:198-201
88 atoms, 84 bonds, 11 residues, 1 model selected
> select /G:1-2
10 atoms, 9 bonds, 2 residues, 1 model selected
> select /G
118 atoms, 117 bonds, 22 residues, 1 model selected
> save 7HMS.cxs
——— End of log from Wed May 21 16:33:51 2025 ———
opened ChimeraX session
> open 5ftj
5ftj title:
Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor [more info...]
Chain information for 5ftj #2
---
Chain | Description | UniProt
A B C D E F | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE | TERA_HUMAN 1-806
Non-standard residues in 5ftj #2
---
ADP — adenosine-5'-diphosphate
OJA — 1-(3-(5-fluoro-1H-indol-2-yl)phenyl)piperidin-4-yl)(2-(4-isopropyl-
PIPERAZIN1-yl)ethyl)-carbamate
> mmaker #2 #2
> matchmaker #2 #2
Missing required "to" argument
> mmaker #2 #1
> matchmaker #2 #1
Missing required "to" argument
> mmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7mhs, chain C (#1) with 5ftj, chain A (#2), sequence alignment
score = 3513.6
RMSD between 114 pruned atom pairs is 1.142 angstroms; (across all 532 pairs:
13.121)
> spilt #1
Unknown command: spilt #1
> split #1
Split 7mhs (#1) into 6 models
Chain information for 7mhs A #1.1
---
Chain | Description
A | No description available
Chain information for 7mhs B #1.2
---
Chain | Description
B | No description available
Chain information for 7mhs C #1.3
---
Chain | Description
C | No description available
Chain information for 7mhs D #1.4
---
Chain | Description
D | No description available
Chain information for 7mhs E #1.5
---
Chain | Description
E | No description available
Chain information for 7mhs G #1.6
---
Chain | Description
G | No description available
> split #2
Split 5ftj (#2) into 6 models
Chain information for 5ftj A #2.1
---
Chain | Description
A | No description available
Chain information for 5ftj B #2.2
---
Chain | Description
B | No description available
Chain information for 5ftj C #2.3
---
Chain | Description
C | No description available
Chain information for 5ftj D #2.4
---
Chain | Description
D | No description available
Chain information for 5ftj E #2.5
---
Chain | Description
E | No description available
Chain information for 5ftj F #2.6
---
Chain | Description
F | No description available
> select all
55750 atoms, 56563 bonds, 50 pseudobonds, 7176 residues, 29 models selected
> style sel stick
Changed 55750 atom styles
> hide sel atoms
> show sel cartoons
> ~select
Nothing selected
> hide #2:1-220
> hide #2:1-220 cartoons
> hide #!1.1 models
> show #!1.1 models
> hide #!2 models
> hide #!1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1 models
> hide #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #1.6 models
> hide #!2.1 models
> hide #!2.2 models
> hide #!2.3 models
> show #!2.1 models
> show #!2.2 models
> show #!2.3 models
> show #!1.1 models
> hide #!1.1 models
> morph #2.1 #1.1
Computed 51 frame morph #3
> coordset #3 1,51
> morph #2.2 #1.2
Computed 51 frame morph #4
> coordset #4 1,51
> morph #2.3 #1.3
Computed 51 frame morph #5
> coordset #5 1,51
> close #3,4,5,6
> hide #!2.4 models
> hide #!2.5 models
> hide #!2.6 models
> show #!2.1 models
> show #!1.3 models
> morph #2.1 #1.3
Computed 51 frame morph #3
> coordset #3 1,51
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> hide #!2 models
> show #!2 models
> show #!2.6 models
> hide #!3 models
> morph #2.6 #1.4
Computed 51 frame morph #4
> coordset #4 1,51
> hide #!4 models
> show #!1.1 models
> show #!2.5 models
> hide #!2.5 models
> show #!2.2 models
> show #!2.1 models
> hide #!1.1 models
> show #!3 models
> show #!4 models
> hide #!2.2 models
> hide #!2.1 models
> show #!2.5 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> hide #!1.5 models
> show #1.6 models
> hide #1.6 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> hide #!2.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> show #!2.3 models
> hide #!2.3 models
> show #!2.4 models
> hide #!2.4 models
> show #!2.5 models
> hide #!2.5 models
> show #!1.1 models
> show #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> hide #!1.2 models
> hide #!1.1 models
> show #!1.4 models
> hide #!1.4 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.5 models
> show #1.6 models
> hide #1.6 models
> hide #!1.5 models
> show #!1.5 models
> show #!1.4 models
> show #!1.3 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> show #!1.5 models
> hide #!1.5 models
> show #!2.3 models
> hide #!2.3 models
> show #!2.2 models
> hide #!2.2 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.6 models
> hide #!2.6 models
> show #!2.5 models
> hide #!2.5 models
> show #!2.5 models
> show #!1.5 models
> morph #2.5 #1.5
Computed 51 frame morph #5
> coordset #5 1,51
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> hide #!2 models
> show #!2.2 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.3 models
> hide #!2.3 models
> morph #2.2 #1.2
Computed 51 frame morph #6
> coordset #6 1,51
> show #!2.1 models
> hide #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> show #!2.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> morph #2.3 #1.1
Computed 51 frame morph #7
> coordset #7 1,51
> save C:/Users/aden6/Desktop/7HMS.cxs
> setCoord
Unknown command: setCoord
> setCord
Unknown command: setCord
> setcord
Unknown command: setcord
> setco
Unknown command: setco
> setcoordinate
Unknown command: setcoordinate
> coordset
Missing or invalid "structures" argument: empty atom specifier
Failed to share D3D11 texture (COM error 0x80070057: �Ѽƿ��~�C). This will
result in failed rendering. Report the bug, and try restarting with
QTWEBENGINE_CHROMIUM_FLAGS=--disble-gpu
[Repeated 4 time(s)]
> coordset model #1 1
Missing or invalid "structures" argument: invalid structures specifier
> coordset #1 1,51,1
[Repeated 1 time(s)]
> coordset #1 1,51,10
[Repeated 1 time(s)]
> coordset #3 1,51,10
> coordset #3 1,51,1
> coordset #3 1,51,1,1
Expected a keyword
> coordset #3 1,51,1 wrap t
Expected a keyword
> coordset #3 1
> coordset #3 51,1
> coordset #3 1,-11
> coordset #3 1,-1,1
> coordset #3,4 1,-1,1
> coordset #3,4,5,6,7 1,-1,1
> coordset #3,4,5,6,7 1
> show #!2.5 models
> hide #!2.5 models
> show #!2.4 models
> hide #!2.4 models
> show #!2.4 models
> select #1 :1-200
178 atoms, 173 bonds, 29 residues, 5 models selected
> show #!3-7#!2.4 cartoons
> show #!1.1 models
> show #!1.2 models
> show #!1.3 models
> show #!1.4 models
> show #!1.5 models
> show #1.6 models
> hide #1.6 models
> hide #!1 models
> select #2:1-200
8640 atoms, 8772 bonds, 1080 residues, 6 models selected
> show #!2.1 models
> show #!2.2 models
> show #!2.5 models
> show #!2.3 models
> show #!2.6 models
> show sel atoms
> show sel cartoons
> hide sel atoms
> color sel cyaa
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color sel cyan
Alignment identifier is 1
> select #2.1/A:21 #2.2/B:21 #2.3/C:21 #2.4/D:21 #2.5/E:21 #2.6/F:21
48 atoms, 42 bonds, 6 residues, 6 models selected
> select #2.1/A:21-26 #2.2/B:21-26 #2.3/C:21-26 #2.4/D:21-26 #2.5/E:21-26
> #2.6/F:21-26
318 atoms, 318 bonds, 36 residues, 6 models selected
1 [ID: 1] region chains A,B,C,D,E,F [1-6] RMSD: 107.364
> select #2.1/A:26 #2.2/B:26 #2.3/C:26 #2.4/D:26 #2.5/E:26 #2.6/F:26
48 atoms, 42 bonds, 6 residues, 6 models selected
> select #2.1/A:26-102 #2.2/B:26-102 #2.3/C:26-102 #2.4/D:26-102 #2.5/E:26-102
> #2.6/F:26-102
3648 atoms, 3654 bonds, 462 residues, 6 models selected
1 [ID: 1] region chains A,B,C,D,E,F [6-82] RMSD: 99.524
> select #1
21148 atoms, 21481 bonds, 44 pseudobonds, 2700 residues, 16 models selected
Alignment identifier is 1.1/A
Alignment identifier is 1.2/B
Alignment identifier is 1.3/C
Alignment identifier is 1.4/D
Alignment identifier is 1.5/E
Alignment identifier is 1.6/G
> select #1.1/A:200
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1.1/A:200-201
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #2: 200-100
Nothing selected
> hide sel cartoons
> coordset #1 1,20 computeSs true
> coordset #3,4,5,6,7 1,20 computeSs true
> hide #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!2 models
> coordset #3,4,5,6,7 1,20 computeSs true
[Repeated 1 time(s)]
> coordset #3,4,5,6,7 1,51 computeSs true
[Repeated 1 time(s)]
> show #!1 models
> hide #!1 models
> show #!1.1 models
> show #!1.2 models
> show #!1.3 models
> coordset #3,4,5,6,7 1 computeSs true
> show #!1.4 models
> show #!1.5 models
> show #1.6 models
> hide #!1 models
> show #!2 models
> select #2:201-10000
25962 atoms, 26304 bonds, 6 pseudobonds, 3396 residues, 12 models selected
> delete sel
Undo failed, probably because structures have been modified.
> hide #!2 models
> open 5ftj
5ftj title:
Cryo-EM structure of human p97 bound to UPCDC30245 inhibitor [more info...]
Chain information for 5ftj #8
---
Chain | Description | UniProt
A B C D E F | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE | TERA_HUMAN 1-806
Non-standard residues in 5ftj #8
---
ADP — adenosine-5'-diphosphate
OJA — 1-(3-(5-fluoro-1H-indol-2-yl)phenyl)piperidin-4-yl)(2-(4-isopropyl-
PIPERAZIN1-yl)ethyl)-carbamate
> mmaker #3 to #1
Specify a single 'to' model only
> mmaker #3 #1
> matchmaker #3 #1
Missing required "to" argument
> mmaker #3 to #1
Specify a single 'to' model only
> mmaker #8 to #1
Specify a single 'to' model only
> mmaker #8 #1
> matchmaker #8 #1
Missing required "to" argument
> mmaker #8 to #1
Specify a single 'to' model only
> mmaker #8/a to #1.1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7mhs A, chain A (#1.1) with 5ftj, chain A (#8), sequence alignment
score = 2458.7
RMSD between 65 pruned atom pairs is 0.923 angstroms; (across all 525 pairs:
11.683)
> select #8
34602 atoms, 35082 bonds, 6 pseudobonds, 4476 residues, 2 models selected
> style sel stick
Changed 34602 atom styles
> hide sel atoms
> show sel cartoons
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> mmaker #8 to #2
Specify a single 'to' model only
> mmaker #8/a to #2.1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 5ftj A, chain A (#2.1) with 5ftj, chain A (#8), sequence alignment
score = 2802.6
RMSD between 180 pruned atom pairs is 0.000 angstroms; (across all 180 pairs:
0.000)
> show #!2 models
> hide #!2 models
> hide #!8 models
> show #!8 models
> select #8
34602 atoms, 35082 bonds, 6 pseudobonds, 4476 residues, 2 models selected
> hide #8 cartoons
> show #8/d
> hide sel cartoons
> hide sel atoms
> show sel cartoons
> undo
> show #8/d cartoons
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select #8/d #8/a,b,c,e,f,g
34602 atoms, 35082 bonds, 6 pseudobonds, 4476 residues, 2 models selected
> show sel cartoons
> select #8/d #8/a,b,c,e,f,g:1-200
12967 atoms, 13157 bonds, 1 pseudobond, 1646 residues, 2 models selected
> select #8
34602 atoms, 35082 bonds, 6 pseudobonds, 4476 residues, 2 models selected
> ~select #8/d #8/a,b,c,e,f,g:1-200
21635 atoms, 21920 bonds, 5 pseudobonds, 2830 residues, 2 models selected
> delete sel
> select #8:1-200
8640 atoms, 8772 bonds, 1080 residues, 1 model selected
> color sel cyan
> ~select
Nothing selected
> coordset #3,4,5,6,7 1,51
> view
> view p1
Expected an objects specifier or a view name or a keyword
> view
> view orient
> view
> view orient
[Repeated 1 time(s)]
> turn x 90
> turn x -90
> turn y 90
> coordset #1 1 computeSs true
> coordset #3,4,5,6,7
> coordset #3,4,5,6,7 1
[Repeated 1 time(s)]
> view name p1
> turn x 90
> turn x 180
> view name p2
> hide #!8 models
> turn y90
Expected an axis vector or a keyword
> turn y 90
> turn y 10
[Repeated 11 time(s)]
> view name p3
> coordset #1 1 computeSs true
> coordset #1 1-51 computeSs true
Expected a keyword
> coordset #1 1,51 computeSs true
> coordset #3,4,5,6,7 1,51 computeSs true
> coordset #3,4,5,6,7 1 computeSs true
> view p1
> show #!8 models
> set bgColor white
> lighting soft
> lighting simple
> lighting full
> select #8:1-200
8640 atoms, 8772 bonds, 1080 residues, 1 model selected
> show sel surfaces
> color #8:1-200 cyna
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #8:1-200 cyan
> transparency sel 65 cartoons
> transparency #8:1-200 65 cartoons
> transparency #8:1-200 65 surfaces
> transparency #8:1-200 0 cartoons
> transparency #8:1-200 80 surfaces
> hide #!8 models
> show #!8 models
> view p2
> fly p2 p3
> hide #!8 models
> view name p3
> coordset #3,4,5,6,7 1,51 computeSs true
> turn y 180
[Repeated 1 time(s)]
> turn y 180 10
> turn y 10 20
> turn y 2 20
> turn y 2 90
> turn y 1 180
> view p3
> turn y 1 180
[Repeated 1 time(s)]
> select #2
8640 atoms, 8772 bonds, 1080 residues, 7 models selected
> select #2:adp,atp,ags
Nothing selected
> coordset #3,4,5,6,7 1 computeSs true
> show #!8 models
> view p1
> fly p1 p2
> fly p2 p3
[Repeated 2 time(s)]
> crossfade
> hide #8 cartoons
> fly p2 p3
> crossfade
> hide #8 cartoons
> hide #8 surfaces
> select add #8
12967 atoms, 13157 bonds, 1 pseudobond, 1646 residues, 2 models selected
> show sel cartoons
> show #8:1-200 surfaces
> fly p2 p3
> wait
> crossfade
> hide #8 cartoons
> hide #8 surfaces
> coordset #3,4,5,6,7 1,51 computeSs true
> turn y 1 360
> show #1.6
> show #1.6 cartoons
> hide #1.6 models
> show #1.6 models
> select add #1.6
13085 atoms, 13274 bonds, 1 pseudobond, 1668 residues, 9 models selected
> hide #1.6 models
> show #1.6 models
> lighting soft
> hide #!1 models
> hide #1.6 models
> hide #!1.5 models
> hide #!1.4 models
> hide #!1.3 models
> hide #!1.1 models
> hide #!1.2 models
> show #1.6 models
> ~select
Nothing selected
> view p3
> view o2
Expected an objects specifier or a view name or a keyword
> view p2
> view p1
> view p2
> view p3
[Repeated 1 time(s)]
> hide #1.6 models
> show #1.6 models
> select ~sel & ##selected
Nothing selected
> view p1
> coordset #3,4,5,6,7 1 computeSs true
> hide #1.6 models
> hide #!8 models
> show #!8 models
> select add #8
12967 atoms, 13157 bonds, 1 pseudobond, 1646 residues, 2 models selected
> show sel atoms
> show sel cartoons
> hide sel atoms
> show #8:1-200 surfaces
> ui hideFloating toggle
> select
63050 atoms, 64031 bonds, 66 pseudobonds, 8033 residues, 35 models selected
> ~select
Nothing selected
> movie record
> fly p1 p2
> fly p2 p3
> wait
> crossfade
> hide #8 cartoons
> hide #8 surfaces
> coordset #3,4,5,6,7 1,51 computeSs true
> crossfade
> show #1.6 cartoons
> crossfade
> show #1.6 atoms
> show #1.6 models
> turn y 1 360
> movie encode C:\Users\aden6\Desktop\confomational change in vivo.mp4 quality
> highest
Expected ',' or a keyword
> movie encode C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4 quality
> highest
Movie saved to \C:Users\\...\Desktop\confomational_change_in_vivo.mp4
> color #3,4,5,6,7:209-462 dim gray
> color #3,4,5,6,7:200-462 dim gray
> color #3,4,5,6,7:463-806 plum
> hide #!8 models
> show #!8 models
> show #1.6#!3-8 atoms
> show #1.6#!3-8 cartoons
> hide #1.6#!3-8 atoms
> view p1
> color #3,4,5,6,7,8:463-806 plum
> color #3,4,5,6,7,8:200-462 dim gray
> hide #1.6 models
> fly p1
> movie record
> fly p1 p2
> fly p2 p3
> crossfade
> color #3 #C62828
> color #4 #EF6C00
> color #5 #2E7D32
> color #6 #0288D1
> color #7 #8E24AA
> wait
wait requires a frame count argument unless motion is in progress
> crossade; hide #8 c; hide #8 s
Unknown command: crossade; hide #8 c; hide #8 s
> color #7 #8E24AA
> wait
wait requires a frame count argument unless motion is in progress
> crossfade
> hide #8 cartoons
> hide #8 surfaces
> movie encode C:\Users\aden6\Desktop\test_confomational_change_in_vivo.mp4
> quality highest
Movie saved to \C:Users\\...\Desktop\test_confomational_change_in_vivo.mp4
> color #3,4,5,6,7,8:463-806 plum
> color #3,4,5,6,7,8:200-462 dim gray
> hide #!8 models
> show #!8 models
> show #8 cartoons
> view p1
> show #1,6 cartoons
> show #1.6 models
> hide #1.6 cartoons
> show #1.6 cartoons
> hide #1.6 cartoons
> movie record
> fly p1 p2
> fly p2 p3
> crossfade
> hide #8 cartoons
> hide #8 surfaces
> color #3 #C62828
> color #4 #EF6C00
> color #5 #2E7D32
> color #6 #0288D1
> color #7 #8E24AA
> coordset #3,4,5,6,7 1,51 computeSs true
> show #1.6 cartoons
> turn y 2 180
> movie encode C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4 quality
> highest
C:\Program Files\ChimeraX 1.9\bin\ffmpeg.exe -r 25 -i
C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 15 C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4
stdout:
stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with gcc 6.3.0 (GCC)
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from
'C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm':
Duration: 00:00:18.68, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 1193x795, 25 tbr, 25 tbn, 25 tbc
C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4: Permission denied
An error occurred during encoding. See Reply Log for details.
Error during MPEG encoding:
\-----------------------------
Exit value: 1
Error message:
stdout:
stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with gcc 6.3.0 (GCC)
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from
'C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm':
Duration: 00:00:18.68, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 1193x795, 25 tbr, 25 tbn, 25 tbc
C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4: Permission denied
\-----------------------------
> movie encode C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4 quality
> highest
C:\Program Files\ChimeraX 1.9\bin\ffmpeg.exe -r 25 -i
C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 15 C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4
stdout:
stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with gcc 6.3.0 (GCC)
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from
'C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm':
Duration: 00:00:18.68, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 1193x795, 25 tbr, 25 tbn, 25 tbc
C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4: Permission denied
An error occurred during encoding. See Reply Log for details.
Error during MPEG encoding:
\-----------------------------
Exit value: 1
Error message:
stdout:
stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with gcc 6.3.0 (GCC)
configuration: --enable-gpl --enable-version3 --enable-d3d11va --enable-dxva2
--enable-libmfx --enable-nvenc --enable-avisynth --enable-bzlib --enable-
fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass
--enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype
--enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-
libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-
libopenh264 --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-
libsnappy --enable-libsoxr --enable-libspeex --enable-libtheora --enable-
libtwolame --enable-libvidstab --enable-libvo-amrwbenc --enable-libvorbis
--enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264
--enable-libx265 --enable-libxavs --enable-libxvid --enable-libzimg --enable-
lzma --enable-zlib
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from
'C:\Users\aden6\AppData\Local\Temp\chimovie_BXfG-%05d.ppm':
Duration: 00:00:18.68, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 1193x795, 25 tbr, 25 tbn, 25 tbc
C:\Users\aden6\Desktop\confomational_change_in_vivo.mp4: Permission denied
\-----------------------------
> movie encode C:\Users\aden6\Desktop\001_confomational_change_in_vivo.mp4
> quality highest
Movie saved to \C:Users\\...\Desktop\001_confomational_change_in_vivo.mp4
> coordset #3,4,5,6,7 1 computeSs true
> view p1
> lighting simple
[Repeated 1 time(s)]
> lighting soft
[Repeated 1 time(s)]
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting shadows false
> set bgColor gray
> set bgColor #80808000
> set bgColor black
> set bgColor transparent
> graphics silhouettes true
> lighting shadows true
> set bgColor white
> set bgColor #ffffff00
> view p1
> coordset #3,4,5,6,7 1 computeSs true
> coordset #3,4,5,6,7 1,51 computeSs true
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> select ~sel & ##selected
Nothing selected
> coordset #3,4,5,6,7 1 computeSs true
> view p2
> coordset #3,4,5,6,7 ,51 computeSs true
[Repeated 2 time(s)]
> coordset #3,4,5,6,7 1 computeSs true
> coordset #3,4,5,6,7 51 computeSs true
> ~select
Nothing selected
> coordset #3,4,5,6,7 1 computeSs true
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> show #!1.2 models
> hide #!1.2 models
> hide #!1.1 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> color #2
> close #2
> select #8
12967 atoms, 13157 bonds, 1 pseudobond, 1646 residues, 2 models selected
> show #1.6#!3-7 cartoons
> show #1.6#!3-7 atoms
> hide #1.6#!3-7 atoms
> select #8
12967 atoms, 13157 bonds, 1 pseudobond, 1646 residues, 2 models selected
> show #8 cartoons
> show #!8 models
> lighting full
> ui hideFloating toggle
> ~select
Nothing selected
> lighting flat
> lighting soft
> color #3,4,5,6,7,8:200-462 dim gray
> color #3,4,5,6,7,8:463-806 plum
> ~select
Nothing selected
> hide #1.6 cartoons
> view p1
> view p2
> fly p2 p3
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> corset
Unknown command: corset
> cordset
Unknown command: cordset
> cordiset
Unknown command: cordiset
> cordinateset
Unknown command: cordinateset
> coordent
Unknown command: coordent
> coordentset
Unknown command: coordentset
> coordset
Missing or invalid "structures" argument: empty atom specifier
Failed to share D3D11 texture (COM error 0x80070057: �Ѽƿ��~�C). This will
result in failed rendering. Report the bug, and try restarting with
QTWEBENGINE_CHROMIUM_FLAGS=--disble-gpu
[Repeated 2 time(s)]
> coordset #7 1,51
> wait 10
> coordset #6 1,51
> wait 10
> coordset #3 1,51
> wait 10
> coordset #4 1,51
> wait 10
> coordset #5 1,51
> coordset #3,4,5,6,7 1 computeSs true
> coordset #7 1,51
> wait 10
> coordset #6 1,51
> wait 10
> coordset #3 1,51
> wait 10
> coordset #4 1,51
> wait 10
> coordset #5 1,51
> coordset #3,4,5,6,7 1 computeSs true
> coordset #7 1,51
> wait 10
> coordset #6 1,51
> wait 10
> coordset #3 1,51
> wait 10
> coordset #4 1,51
> wait 10
> coordset #5 1,51
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> view p1
> ~select
Nothing selected
> movie record
> crossfade
> hide #8 cartoons
> coordset #7 1,51 pauseFrames 2
> wait 10
> coordset #6 1,51 pauseFrames 2
> wait 10
> coordset #3 1,51 pauseFrames 2
> wait 10
> coordset #4 1,51 pauseFrames 2
> wait 10
> coordset #5 1,51 pauseFrames 2
> movie encode C:\Users\aden6\Desktop\002_confomational_change_in_vivo.mp4
> quality highest
Movie saved to \C:Users\\...\Desktop\002_confomational_change_in_vivo.mp4
> coordset #3,4,5,6,7 1 computeSs true
> show #8 cartoons
> movie record
> movie encode
Movie encoding failed because no images were recorded.
> fly p2
> fly p1
> view name p0
> 2view p1
Unknown command: 2view p1
> view p1
> movie record
> fly p1 p0
> crossfade
> hide #8
> movie encode
Movie saved to C:\Users\aden6/Desktop/movie.mp4
> movie encode
No frames have been recorded
> fly p1
> movie record
> fly p1 p0
> wait
> crossfade
> hide #8 cartoons
> coordset #7 1,51 pauseFrames 2
> wait 10
> coordset #6 1,51 pauseFrames 2
> wait 10
> coordset #3 1,51 pauseFrames 2
> wait 10
> coordset #4 1,51 pauseFrames 2
> wait 10
> coordset #5 1,51 pauseFrames 2
> movie encode C:\Users\aden6\Desktop\003_confomational_change_in_vivo.mp4
Movie saved to \C:Users\\...\Desktop\003_confomational_change_in_vivo.mp4
> movie encode C:\Users\aden6\Desktop\003_confomational_change_in_vivo.mp4
> quality highest
No frames have been recorded
Failed to share D3D11 texture (COM error 0x80070057: �Ѽƿ��~�C). This will
result in failed rendering. Report the bug, and try restarting with
QTWEBENGINE_CHROMIUM_FLAGS=--disble-gpu
[Repeated 2 time(s)]
> vr roomCamera
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3213, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 238, in vr_room_camera
rc = c.enable_room_camera(enable)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 633, in enable_room_camera
self._room_camera = rc = RoomCamera(parent, self.room_to_scene, self.render)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 1197, in __init__
self._camera_model = self._create_camera_model(parent, room_to_scene, texture)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 1240, in _create_camera_model
cm = RoomCameraModel('Room camera', parent.session, texture, room_to_scene)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 1381, in __init__
self.set_size(width)
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 1400, in set_size
scene_width = width * self._last_room_to_scene.scale_factor()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'scale_factor'
AttributeError: 'NoneType' object has no attribute 'scale_factor'
File "C:\Program Files\ChimeraX 1.9\bin\Lib\site-
packages\chimerax\vive\vr.py", line 1400, in set_size
scene_width = width * self._last_room_to_scene.scale_factor()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 Core Profile Context 22.20.14.220712
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: zh_TW.cp950
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: windows
Manufacturer: ASUSTeK COMPUTER INC.
Model: ASUS TUF Gaming A15 FA506IC_FA506IC
OS: Microsoft Windows 11 家用版 (Build 26100)
Memory: 16,557,797,376
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 4800H with Radeon Graphics
OSLanguage: zh-TW
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
autocommand: 2.2.2
babel: 2.16.0
backports.tarfile: 1.2.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
importlib_metadata: 8.0.0
importlib_resources: 6.4.0
inflect: 7.3.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jaraco.context: 5.3.0
jaraco.functools: 4.0.1
jaraco.text: 3.12.1
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
more-itertools: 10.3.0
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
ordered-set: 4.1.0
packaging: 23.2
packaging: 24.1
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
platformdirs: 4.2.2
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4.2
traitlets: 5.14.3
typeguard: 4.3.0
typing_extensions: 4.12.2
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
zipp: 3.19.2
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Fixed.
User tried to enable VR room camera when VR had not been started. Made this give an error message instead of a traceback.