Timeline
May 15, 2024:
-
11:21 PM
Ticket #15229 (Crash attaching file for bug report) created by chimerax-bug-report@…
-
[…]
-
10:03 PM
Ticket #15228 (Crash in event loop, possibly remote display) created by chimerax-bug-report@…
-
[…]
-
4:21 PM
Ticket #15227 (Make alphafold interfaces command work with protein + ligand predictions) created by Tom Goddard
-
AlphaFold 3 can predict protein + ligand structures. The current …
-
2:12 PM
Ticket #15226 (binary wheels generated via pyproject.toml have wrong name on linux) created by Greg Couch
-
I just noticed that the AlignmentHdrs and Core wheels use linux_x86_64 …
-
12:11 PM
Ticket #15225 (AlphaFold3 PAE plot for phospho-protein not working) created by Stephane.Mouilleron@…
-
[…]
fold_pp1_neurabin_4ebp1_70pt_full_data_0.json
…
-
11:14 AM
Ticket #15191 (ChimeraX cannot find MD/Ensemble Analysis option) closed by Eric Pettersen
-
nonchimerax: "MD/Ensemble Analysis" is a tool category for our older Chimera …
-
11:04 AM
Ticket #15218 (Two AlphaFold3 problems) closed by Tom Goddard
-
duplicate: Fixed in the current ChimeraX daily build. AlphaFold 3 has PAE values …
-
11:03 AM
Ticket #15216 (AlphaFold3 with ligands PAE json file: number of structure residues ...) closed by Tom Goddard
-
duplicate: Fixed in the current ChimeraX daily build. AlphaFold 3 has PAE values …
-
11:02 AM
Ticket #15214 (AlphaFold3 with ligands PAE json file: number of structure residues ...) closed by Tom Goddard
-
duplicate: Yes it is fixed in the current ChimeraX daily build. AlphaFold 3 has …
-
10:53 AM
Ticket #15224 (ChimeraX tries to open debugger arguments as if they were files) created by Zach Pearson
-
When started with a debugger (at least on Mac), ChimeraX somehow gets …
-
10:27 AM
Ticket #15222 (Crash in Open→File dialog) closed by Eric Pettersen
-
can't reproduce
-
10:25 AM
Ticket #15221 (2D Labels: QColor arguments wrong) closed by Eric Pettersen
-
duplicate: Duplicate of #15112
Looks like a second person used the 'outline' option.
-
10:21 AM
Ticket #15220 (OSError in python_instances_of_class) closed by Eric Pettersen
-
duplicate
-
10:20 AM
Ticket #15223 (DICOM: Models that track their children in auxiliary data structures ...) created by Zach Pearson
-
10:18 AM
Ticket #15219 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:10 AM
Ticket #15215 (Crash in python_instances_of_class) closed by Eric Pettersen
-
duplicate
-
9:12 AM
Ticket #15204 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Hui-Ting,
Thanks for reporting this problem. It is fixed in the …
-
9:04 AM
Ticket #15222 (Crash in Open→File dialog) created by chimerax-bug-report@…
-
[…]
-
8:42 AM
Ticket #15221 (2D Labels: QColor arguments wrong) created by chimerax-bug-report@…
-
[…]
-
7:50 AM
Ticket #15220 (OSError in python_instances_of_class) created by chimerax-bug-report@…
-
[…]
-
7:34 AM
Ticket #15219 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
6:37 AM
Ticket #15218 (Two AlphaFold3 problems) created by celine.bouchoux@…
-
[…]
-
6:11 AM
Ticket #15217 (Amide nitrogens mistyped as N2) created by Tristan Croll
-
[…]
-
5:02 AM
Ticket #15216 (AlphaFold3 with ligands PAE json file: number of structure residues ...) created by narayan1.gautam@…
-
[…]
-
4:05 AM
Ticket #15215 (Crash in python_instances_of_class) created by chimerax-bug-report@…
-
[…]
-
3:23 AM
Ticket #15214 (AlphaFold3 with ligands PAE json file: number of structure residues ...) created by rob.klose@…
-
[…]
May 14, 2024:
-
8:14 PM
Ticket #15213 (Allow opening AlphaFold PAE json file from Open File dialog) closed by Tom Goddard
-
fixed: Done. Added these to 1.8 and daily builds.
Since the Open File …
-
8:10 PM
Ticket #15213 (Allow opening AlphaFold PAE json file from Open File dialog) created by Tom Goddard
-
Currently AlphaFold PAE data is opened using the special AlphaFold …
-
6:18 PM
Ticket #15212 (Followup to #15191: ChimeraX cannot find MD/Ensemble Analysis option) created by 1799189085@…
-
[…]
-
6:03 PM
Ticket #15211 (fourup slice view coloring does not track color wells in Volume Viewer) created by Elaine Meng
-
Tested in UCSF ChimeraX version: 1.9.dev202405140241 (2024-05-14): I …
-
5:44 PM
Ticket #15210 (Add script-friendly log output preference setting) created by esa-pekka.kumpula@…
-
From: Kumpula, Esa-Pekka via ChimeraX-users
Sent: Tuesday, May 14, …
-
5:27 PM
2024-5-16 created by Tom Goddard
-
5:26 PM
Dev2024-5-20 created by Tom Goddard
-
5:26 PM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
4:32 PM
Ticket #15209 (simplify "segmentations" command keyword options) created by Elaine Meng
-
(1) Consolidate resetMouseModes + setMouseModes into one keyword …
-
3:59 PM
Ticket #15208 (improve/consolidate Medical Image icons to toggle mouse & ...) created by Elaine Meng
-
Currently there are 4 icons, or actually 2 icons both appearing twice. …
-
2:14 PM
Ticket #15207 (ISOLDE: ResidueStepper holding reference to closed structure) created by chimerax-bug-report@…
-
[…]
-
1:28 PM
Ticket #14836 (Residue addition problem) closed by Eric Pettersen
-
fixed: Fixed in daily build and 1.8 release branch. I had the …
-
1:26 PM
Ticket #15206 (SEQCROW: read_com: KeyError: 'method') created by chimerax-bug-report@…
-
[…]
-
1:19 PM
Ticket #15205 (Have segmentations interpolate mouse movements) created by Zach Pearson
-
I was experimenting with 3D slicer and moving my mouse quickly -- much …
-
12:18 PM
Ticket #15204 (Crash in garbage collection) created by hchou01@…
-
[…]
-
12:18 PM
Ticket #9526 (DICOM Segmentations: include SEG models opened from DICOM in the list ...) reopened by Elaine Meng
-
This feature has gone away. Tested in UCSF ChimeraX version: …
-
11:20 AM
Ticket #15202 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
11:17 AM
Ticket #15201 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi,
Thanks for reporting this problem. It is fixed in the 1.8 release …
-
11:10 AM
Ticket #15203 (Crash changing Mac display configuration) created by goddard@…
-
[…]
-
11:09 AM
Ticket #15098 (Saving a session while a BLAST job is in progress crashes ChimeraX) closed by Zach Pearson
-
can't reproduce: I'm not able to reproduce this today. I started several blast jobs in …
-
11:05 AM
Ticket #15202 (Crash in garbage collection) created by genfren@…
-
[…]
-
10:27 AM
Ticket #15201 (Crash in garbage collection) created by genfren@…
-
[…]
-
9:46 AM
Ticket #15198 (AddH adding hydrogen to terminal C?) closed by Eric Pettersen
-
can't reproduce: I can't get AddH to add the bad hydrogen; maybe this file had it initially?
-
9:32 AM
Ticket #15200 (Crash changing Mac display configuration) closed by Eric Pettersen
-
can't reproduce
-
9:30 AM
Ticket #15199 (UnicodeDecodeError opening PDB file) closed by Eric Pettersen
-
can't reproduce: Would need the file in order to work on this.
-
9:24 AM
Ticket #15197 (Matchmaker chain-chooser: 'Sequence' object has no attribute 'structure') closed by Eric Pettersen
-
can't reproduce: I don't think this can happen anymore because in 1.8 Chains are no …
-
9:20 AM
Ticket #15196 (Opened PDB file as NBO output file) closed by Eric Pettersen
-
not a bug: File lacked .pdb suffix
-
9:15 AM
Ticket #15195 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
9:13 AM
Ticket #15194 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
9:13 AM
Ticket #15193 (OSError in python_instances_of_class) closed by Eric Pettersen
-
duplicate
-
9:08 AM
Ticket #15192 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
8:54 AM
Ticket #15190 (Crash in python_instances_of_class) closed by Eric Pettersen
-
duplicate
-
6:07 AM
Ticket #15200 (Crash changing Mac display configuration) created by chimerax-bug-report@…
-
[…]
-
4:46 AM
Ticket #15199 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
-
[…]
-
4:10 AM
Ticket #15198 (AddH adding hydrogen to terminal C?) created by chimerax-bug-report@…
-
[…]
-
2:24 AM
Ticket #15197 (Matchmaker chain-chooser: 'Sequence' object has no attribute 'structure') created by lp212@…
-
[…]
-
1:16 AM
Ticket #15196 (Opened PDB file as NBO output file) created by chimerax-bug-report@…
-
[…]
-
1:02 AM
Ticket #15195 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
May 13, 2024:
-
11:45 PM
Ticket #15194 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
11:40 PM
Ticket #15193 (OSError in python_instances_of_class) created by chimerax-bug-report@…
-
[…]
-
9:39 PM
Ticket #15192 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
7:16 PM
Ticket #15191 (ChimeraX cannot find MD/Ensemble Analysis option) created by 1799189085@…
-
[…]
-
7:08 PM
Ticket #15190 (Crash in python_instances_of_class) created by chimerax-bug-report@…
-
[…]
-
6:24 PM
Ticket #15135 (AlphaFold3 and ChimeraX) closed by Tom Goddard
-
fixed: Thanks. I saw Pushmeet Kohli's comment that the plan is to release …
-
6:20 PM
Ticket #15144 (AlphaFold3 with ligands PAE json file: number of structure residues ...) closed by Tom Goddard
-
fixed: Fixed in ChimeraX daily build and 1.8 release candidates dated May 14, …
-
5:36 PM
Ticket #15188 (KeyError matching selected regions) closed by Eric Pettersen
-
duplicate: Hi Mark,
Thanks for reporting this problem. It is fixed in newer …
-
4:38 PM
Ticket #15189 (ESMFold fetch: certificate verify failed) closed by Tom Goddard
-
fixed: Fixed in ChimeraX 1.8 and daily builds.
-
4:38 PM
Ticket #15189 (ESMFold fetch: certificate verify failed) created by goddard@…
-
[…]
-
4:21 PM
Ticket #15188 (KeyError matching selected regions) created by m.hunter@…
-
[…]
-
4:14 PM
Ticket #15187 (Multiple Modeller jobs step on each other) created by Eric Pettersen
-
Specifically, since they use the same temp directory, creation/removal …
-
3:58 PM
Dev2024-5-13 edited by Tom Goddard
-
(diff)
-
12:53 PM
Ticket #15181 (glDrawBuffer: invalid operation) closed by Tom Goddard
-
can't reproduce: Probable remote display OpenGL error.
-
12:49 PM
Ticket #15176 (Problem in glBufferData) closed by Tom Goddard
-
can't reproduce: Possibly broken Nvidia graphics driver.
-
12:47 PM
Ticket #15186 (Crash changing Mac display configuration) created by gghanim@…
-
[…]
-
12:41 PM
Ticket #15175 (Crash changing Mac display configuration) closed by Tom Goddard
-
can't reproduce: Probable Qt crash plugging in or unplugging external display.
Old …
-
12:38 PM
Ticket #15174 (AlphaFold Prediction Requires Newer ChimeraX) closed by Tom Goddard
-
limitation: To run AlphaFold predictions you need a newer ChimeraX version. This …
-
12:28 PM
Ticket #15162 (command "segmentations setHandModes" gives traceback) closed by Zach Pearson
-
fixed: Should be …
-
12:27 PM
Ticket #15169 (Failed to create NSOpenGLContext) closed by Tom Goddard
-
duplicate: Duplicate of #15170, same reporter, a few minutes apart.
-
12:24 PM
Ticket #15168 (Crash changing Mac display configuration) closed by Tom Goddard
-
can't reproduce: Qt bug with multiple displays on Mac.
Maybe the user plugged in or …
-
12:22 PM
Ticket #15185 (segmentations set/resetHandModes breaks on non-Windows) closed by Zach Pearson
-
duplicate: Forgot about #15162
-
12:15 PM
Ticket #15184 (segmentations resetMouseModes sets mouse modes to none) closed by Zach Pearson
-
fixed: As for the other mouse modes, I stepped through the code that saves …
-
12:02 PM
Ticket #15177 (label monitoring: 'Changes' object has no attribute ...) closed by Eric Pettersen
-
fixed
-
11:52 AM
Ticket #15185 (segmentations set/resetHandModes breaks on non-Windows) created by Zach Pearson
-
These commands should not work unless we're on a platform that …
-
11:52 AM
Ticket #15184 (segmentations resetMouseModes sets mouse modes to none) created by Zach Pearson
-
10:57 AM
Ticket #15183 (Restoring session: core tasks KeyError) closed by Zach Pearson
-
fixed: This has been fixed in the daily builds.
-
10:52 AM
Ticket #15182 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Marc,
Thanks for reporting this problem. It is fixed in the 1.8 …
-
10:49 AM
Ticket #15180 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
10:40 AM
Ticket #15179 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
10:39 AM
Ticket #15178 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
10:31 AM
Ticket #15173 (AlphaFold JSON opened as MOLE JSON) closed by Eric Pettersen
-
duplicate
-
10:29 AM
Ticket #15172 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
10:26 AM
Ticket #15170 (Failed to create NSOpenGLContext) closed by Eric Pettersen
-
duplicate
-
10:22 AM
Ticket #15167 (Opening binary file as PDB) closed by Eric Pettersen
-
not a bug
-
10:07 AM
Ticket #15166 (Bundle ChimeraX-NMRSTAR has no module) closed by Eric Pettersen
-
duplicate: Duplicate of #14882
-
9:55 AM
Ticket #15165 (Infinite loop in OpenCommands) closed by Eric Pettersen
-
limitation: User must be opening another file of the same type in their open commands.
-
6:05 AM
Ticket #15183 (Restoring session: core tasks KeyError) created by chimerax-bug-report@…
-
[…]
-
5:08 AM
Ticket #15182 (Crash in garbage collection) created by m.dionne@…
-
[…]
-
4:44 AM
Ticket #15181 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
-
[…]
-
2:29 AM
Ticket #15180 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
1:25 AM
Ticket #15179 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
1:17 AM
Ticket #15178 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
May 12, 2024:
-
10:52 PM
Ticket #15177 (label monitoring: 'Changes' object has no attribute ...) created by chimerax-bug-report@…
-
[…]
-
5:49 PM
Ticket #15176 (Problem in glBufferData) created by chimerax-bug-report@…
-
[…]
-
4:53 PM
Ticket #15175 (Crash changing Mac display configuration) created by chimerax-bug-report@…
-
[…]
-
5:39 AM
Ticket #15174 (AlphaFold Prediction Requires Newer ChimeraX) created by xushuai.dong@…
-
[…]
-
1:42 AM
Ticket #15173 (AlphaFold JSON opened as MOLE JSON) created by chimerax-bug-report@…
-
[…]
May 11, 2024:
-
6:36 PM
Ticket #15172 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
3:29 PM
Ticket #15171 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
-
[…]
-
1:28 PM
Ticket #15170 (Failed to create NSOpenGLContext) created by chimerax-bug-report@…
-
[…]
-
1:25 PM
Ticket #15169 (Failed to create NSOpenGLContext) created by chimerax-bug-report@…
-
[…]
-
11:36 AM
Ticket #15168 (Crash changing Mac display configuration) created by chimerax-bug-report@…
-
[…]
-
7:38 AM
Ticket #15167 (Opening binary file as PDB) created by chimerax-bug-report@…
-
[…]
-
5:49 AM
Ticket #15166 (Bundle ChimeraX-NMRSTAR has no module) created by chimerax-bug-report@…
-
[…]
-
5:11 AM
Ticket #15165 (Infinite loop in OpenCommands) created by chimerax-bug-report@…
-
[…]
May 10, 2024:
-
3:45 PM
Ticket #15164 (Segmentations tool lists misleading ID numbers) created by Elaine Meng
-
When I create segmentations in the Segmentations tool it lists them in …
-
3:13 PM
Ticket #15163 (Segmentations tools does not list segmentation models read from file ...) created by Elaine Meng
-
If I used "segmentations create" to create new segmentation models and …
-
2:20 PM
Ticket #15162 (command "segmentations setHandModes" gives traceback) created by Elaine Meng
-
[…]
-
1:52 PM
Ticket #15161 (ArtiaX: Dynamo: read_file: could not convert string to float) created by johutchings@…
-
[…]
-
11:45 AM
Ticket #14824 (altloc submodel problems) closed by Eric Pettersen
-
fixed: Barring Tristan requesting a subclass instead of checking the parent …
-
11:08 AM
Ticket #15160 (Crash in garbage collection) closed by Eric Pettersen
-
can't reproduce
-
11:07 AM
Ticket #15159 (Crash in garbage collection) closed by Eric Pettersen
-
can't reproduce
-
10:32 AM
Ticket #15160 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
10:27 AM
Ticket #15159 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
8:47 AM
Ticket #15158 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
8:46 AM
Ticket #15157 (AlphaFold3 with ligands PAE json file: number of structure residues ...) closed by Eric Pettersen
-
duplicate: Duplicate of #15144; adding reporter to recipient list for that ticket.
-
8:41 AM
Ticket #15156 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
8:39 AM
Ticket #15155 (Unknown crash) closed by Eric Pettersen
-
can't reproduce
-
8:30 AM
Ticket #15158 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
4:10 AM
Ticket #15157 (AlphaFold3 with ligands PAE json file: number of structure residues ...) created by clement_rouillon@…
-
[…]
-
1:43 AM
Ticket #15156 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
May 9, 2024:
-
8:09 PM
Ticket #15138 (Crash painting backing store during popup menu display) closed by Tom Goddard
-
can't reproduce: The stack trace from earlier to later calls includes
[…]
Looks …
-
4:59 PM
Ticket #15155 (Unknown crash) created by chimerax-bug-report@…
-
[…]
-
4:00 PM
Ticket #15113 (Coordinate set does not match number of atoms) closed by Eric Pettersen
-
can't reproduce
-
3:50 PM
Ticket #15106 (Sequence viewer structure association has mismatches for identical ...) closed by Eric Pettersen
-
limitation: Yes, sorry, but it is a basic assumption that the sequence in the …
-
2:42 PM
Ticket #15154 (Crash showing Rapid Access at startup) closed by Eric Pettersen
-
can't reproduce
-
2:40 PM
Ticket #15153 (AlphaFold3 with ligands PAE json file: number of structure residues ...) closed by Eric Pettersen
-
duplicate: Duplicate of #15144; adding reporter to recipient list for that ticket.
-
2:22 PM
Ticket #15150 (AlphaFold Service Broken) closed by Eric Pettersen
-
not a bug: Hi Kayley,
Go to the ChimeraX download page …
-
2:18 PM
Ticket #15149 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
2:08 PM
Ticket #15154 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
-
[…]
-
1:59 PM
Ticket #15153 (AlphaFold3 with ligands PAE json file: number of structure residues ...) created by jdzimian@…
-
[…]
-
1:47 PM
NIAID2024 edited by Elaine Meng
-
(diff)
-
11:56 AM
Ticket #15148 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
11:55 AM
Ticket #15147 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
11:15 AM
Ticket #15152 (SEQCROW: IR Spectrum: shapes not aligned) created by chimerax-bug-report@…
-
[…]
-
10:58 AM
Ticket #15145 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Peter,
Thanks for reporting this problem. It is fixed in the …
-
10:58 AM
Ticket #15151 (In CmdDescs, Or(TupleOf(IntArg, 3), TupleOf(IntArg, 2)) only admits ...) created by Zach Pearson
-
Even when reversed, this Or will only accept whichever TupleArg comes …
-
10:55 AM
Ticket #15140 (QQuickWidget: Failed to make context current) closed by Eric Pettersen
-
can't reproduce
-
10:54 AM
Ticket #15139 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:48 AM
Ticket #15137 (Command history: No space left on device) closed by Eric Pettersen
-
not a bug
-
10:45 AM
Ticket #15136 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:06 AM
Ticket #15150 (AlphaFold Service Broken) created by kayleyhr@…
-
[…]
-
5:42 AM
Ticket #15149 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
4:45 AM
Ticket #15148 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
2:19 AM
Ticket #15147 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
1:30 AM
Ticket #15146 (XMAS: update_distances: KeyError: None) created by t.jenne@…
-
[…]
XMAS_Y541A_all.xlsx
May 8, 2024:
-
7:50 PM
Ticket #15145 (Crash in garbage collection) created by carlton.petermark.3v@…
-
[…]
-
4:43 PM
Ticket #15143 (AlphaFold Error Plot: IndexError: list index out of range) closed by Tom Goddard
-
fixed: Fixed in 1.9 and 1.8.
Code to find the .json or .pkl file with the …
-
3:22 PM
Ticket #15144 (AlphaFold3 with ligands PAE json file: number of structure residues ...) created by goddard@…
-
[…]
-
3:20 PM
Ticket #15143 (AlphaFold Error Plot: IndexError: list index out of range) created by goddard@…
-
[…]
-
2:31 PM
Ticket #15142 (Segmentations must spawn the volume viewer if it's been closed) created by Zach Pearson
-
Noticed while creating the tutorial
-
2:15 PM
Ticket #15141 ('ui view ___ guidelines ___' should affect the segmentation tool's ...) created by Zach Pearson
-
Noticed while creating the tutorial
-
2:05 PM
Ticket #15140 (QQuickWidget: Failed to make context current) created by chimerax-bug-report@…
-
[…]
-
2:04 PM
Ticket #15139 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
1:36 PM
Ticket #15138 (Crash painting backing store during popup menu display) created by kstachowski@…
-
[…]
-
1:21 PM
Ticket #15137 (Command history: No space left on device) created by chimerax-bug-report@…
-
[…]
-
12:52 PM
Ticket #15136 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
11:57 AM
Ticket #15122 (Seq viewer: region not in regions list) closed by Eric Pettersen
-
can't reproduce: If this recurs, may have to catch the exception, print the region, and …
-
11:14 AM
Ticket #15123 (2D label clipped) closed by Eric Pettersen
-
fixed: Fix: …
-
11:13 AM
ChangeLog edited by Elaine Meng
-
(diff)
-
11:13 AM
ChangeLog edited by Elaine Meng
-
(diff)
-
10:13 AM
Ticket #14980 (False "BLAST job failed" error on session restore) closed by Zach Pearson
-
fixed: OK, this should actually be fixed now but if you see the error again …
-
8:59 AM
Ticket #15134 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
8:58 AM
Ticket #15133 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
8:57 AM
Ticket #15132 (Crash in QTimer::timerEvent() after opening MRC file) closed by Eric Pettersen
-
can't reproduce
-
8:50 AM
Ticket #15130 (Crash in garbage collection) closed by Eric Pettersen
-
can't reproduce
-
8:48 AM
Ticket #15128 (AddH: Hydrogen not bonded to exactly one other atom) closed by Eric Pettersen
-
not a bug: Bad structure
-
8:26 AM
Ticket #15135 (AlphaFold3 and ChimeraX) created by okovalevskiy@…
-
[…]
-
7:11 AM
Ticket #15134 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
5:33 AM
Ticket #15133 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
4:43 AM
Ticket #15132 (Crash in QTimer::timerEvent() after opening MRC file) created by chimerax-bug-report@…
-
[…]
May 7, 2024:
-
6:00 PM
Ticket #15131 (Color "mismatch" due to lighting) closed by Greg Couch
-
fixed: From Chris Caffalette <ccaffalett@…>:
I solved the …
-
3:28 PM
Ticket #15129 (DisplayVersion entry is missing from Windows registry) closed by Greg Couch
-
fixed: I have reproduced this bug. And it looks we introduced this bug in …
-
3:12 PM
Ticket #14980 (False "BLAST job failed" error on session restore) reopened by Zach Pearson
-
I discovered to my dismay while looking at something else to do with …
-
11:57 AM
Ticket #15131 (Color "mismatch" due to lighting) created by ccaffalett@…
-
[…]
Render-by-Attribute_test.png
-
11:51 AM
Ticket #15130 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
10:57 AM
Ticket #15129 (DisplayVersion entry is missing from Windows registry) created by Gruhm, Sebastian <Sebastian.Gruhm@…>
-
Hello,
I manage the software distribution at the Frei Universität …
-
10:51 AM
Dev2024-5-13 created by Tom Goddard
-
10:50 AM
2024-5-9 created by Tom Goddard
-
10:49 AM
2024-5-2 edited by Tom Goddard
-
(diff)
-
10:46 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
9:34 AM
Ticket #15127 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
9:10 AM
Ticket #15128 (AddH: Hydrogen not bonded to exactly one other atom) created by chimerax-bug-report@…
-
[…]
-
9:05 AM
Ticket #15121 (UnicodeDecodeError opening PDB file) closed by Eric Pettersen
-
not a bug: Not an actual PDB file
-
6:03 AM
Ticket #15127 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
5:30 AM
Ticket #15126 (XMAS: CSV file: Unsupported evidence file format: 'Tabular' object has ...) created by t.jenne@…
-
[…]
Mappe11.csv
-
2:30 AM
Ticket #15125 (ChimeraX does not start) created by stephanie.tennstedt@…
-
[…]
Debug_ChimeraX.txt
May 6, 2024:
-
5:43 PM
Ticket #15119 (Alphafold prediction Google sign in error message: "Alphafold ...) closed by Tom Goddard
-
fixed: Fixed.
It appears Google Colab changed how their sign-in page works …
-
4:54 PM
Ticket #14818 (ChimeraX 1.8 Ubuntu 22.04 missing dependency) closed by Greg Couch
-
fixed: Added libxcb-cursor0 dependency on April 6th.
-
4:36 PM
Ticket #15124 (RFE: Mouse modes snapshots or undo stack) created by Zach Pearson
-
When using the segmentation tool, the user can set a preference to set …
-
4:36 PM
Ticket #15123 (2D label clipped) created by Eric Pettersen
-
[…]
-
4:29 PM
Ticket #15122 (Seq viewer: region not in regions list) created by chimerax-bug-report@…
-
[…]
-
4:03 PM
Dev2024-5-6 edited by Tom Goddard
-
(diff)
-
2:39 PM
Ticket #15121 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
-
[…]
-
1:14 PM
Ticket #15120 (Problem when using the 'record movie' button in the slider interface) closed by Tom Goddard
-
duplicate: This is a problem that happens when using Microsoft OneDrive (a cloud …
-
1:04 PM
Ticket #15112 (2D Labels: QColor arguments wrong) closed by Tom Goddard
-
fixed: Fixed in ChimeraX daily build.
I guess no one used that outline width …
-
12:47 PM
Ticket #14980 (False "BLAST job failed" error on session restore) closed by Zach Pearson
-
fixed: [https://github.com/RBVI/ChimeraX/commit/763508da7ac7fcc5b204c68828c332 …
-
12:12 PM
Ticket #15120 (Problem when using the 'record movie' button in the slider interface) created by Ute.Roehrig@…
-
[…]
[[Image(...)]]
-
11:18 AM
Ticket #15117 (opening session w/ Blast results gives error: BLAST job failed) closed by Zach Pearson
-
duplicate: See #14980
-
11:12 AM
Ticket #15119 (Alphafold prediction Google sign in error message: "Alphafold ...) created by Michael.McManus@…
-
[…]
-
11:03 AM
Ticket #15110 (OpenMM: Context_swiginit: Error compiling kernel: symbol multiply defined) closed by Tristan Croll
-
wontfix: Unfortunately this is one that can't be fixed other than by running on …
-
10:57 AM
Ticket #15118 (Test ticket) reopened by Zach Pearson
-
10:57 AM
Ticket #15118 (Test ticket) closed by Zach Pearson
-
fixed
-
10:42 AM
Ticket #15116 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
10:40 AM
Ticket #15115 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:33 AM
Ticket #15118 (Test ticket) created by Zach Pearson
-
comment
-
10:28 AM
Ticket #14976 (Make blastprotein command load structures and alignment without GUI) closed by Zach Pearson
-
fixed: OK. …
-
10:19 AM
Ticket #15108 (Crash showing open dialog) closed by Eric Pettersen
-
can't reproduce: Hi Si Hoon,
Thanks for reporting this problem. I would recommend …
-
10:15 AM
Ticket #15107 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:09 AM
Ticket #15117 (opening session w/ Blast results gives error: BLAST job failed) created by Elaine Meng
-
[…]
-
10:04 AM
Ticket #15022 (Blast protein should align loaded structures even when raw query ...) reopened by Elaine Meng
-
I still get the same error "Must use different reference and match …
-
6:07 AM
Ticket #15116 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
2:35 AM
Ticket #15115 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
12:42 AM
Ticket #15114 (MemoryError saving session) created by chimerax-bug-report@…
-
[…]
May 5, 2024:
-
12:51 PM
Ticket #15113 (Coordinate set does not match number of atoms) created by chimerax-bug-report@…
-
[…]
-
8:08 AM
Ticket #15112 (2D Labels: QColor arguments wrong) created by ubaumann@…
-
[…]
-
12:54 AM
Ticket #15111 (MemoryError saving session) created by chimerax-bug-report@…
-
[…]
May 4, 2024:
-
11:33 AM
Ticket #15110 (OpenMM: Context_swiginit: Error compiling kernel: symbol multiply defined) created by ajitr@…
-
[…]
-
5:20 AM
Ticket #15109 (AssertionError processing command) created by chimerax-bug-report@…
-
[…]
-
5:16 AM
Ticket #15108 (Crash showing open dialog) created by solli@…
-
[…]
May 3, 2024:
-
11:31 PM
Ticket #15107 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
6:48 PM
Ticket #15106 (Sequence viewer structure association has mismatches for identical ...) created by goddard@…
-
[…]
a2g0z0.fasta
-
5:46 PM
Ticket #15104 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
12:36 PM
Ticket #15064 (Mouse wheel: no Qt.KeyboardModifier.CtrlModifier) closed by Tom Goddard
-
can't reproduce: I am not able to reproduce this error. It appears that it happened …
-
12:29 PM
Ticket #15013 (Dragging docked tool logs "Already setting window visible!") closed by Tom Goddard
-
fixed: Fixed.
Suppressed Qt messages "Already setting window visible!" and …
-
12:17 PM
Ticket #15105 (Reading ImageJ Tiff: IndexError: index out of range) closed by Tom Goddard
-
fixed: Fixed in ChimeraX daily build May 4, 2024 and later.
The problem is …
-
12:13 PM
Ticket #15105 (Reading ImageJ Tiff: IndexError: index out of range) created by christophe.leterrier@…
-
From: Christophe Leterrier via ChimeraX-users …
-
11:44 AM
Ticket #15104 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
9:28 AM
Ticket #15103 (map.volume._update_drawings: KeyError) created by chimerax-bug-report@…
-
[…]
-
8:54 AM
Ticket #15102 (UnicodeDecodeError reading PDB file on Windows) closed by Eric Pettersen
-
can't reproduce: Probably need to add some Windows-specific codec to the list of codecs …
-
8:43 AM
Ticket #15096 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Taha,
Thanks for reporting this problem. It is fixed in the …
-
5:46 AM
Ticket #15102 (UnicodeDecodeError reading PDB file on Windows) created by chimerax-bug-report@…
-
[…]
-
12:56 AM
Ticket #15101 (ISOLDE: start_sim: Error initializing CUDA) created by chimerax-bug-report@…
-
[…]
May 2, 2024:
-
6:43 PM
Ticket #15100 (diffplot: Cluster atomic models by projecting atom positions with UMAP) created by Tom Goddard
-
Klim Verba, Katrina Black and Tom Goddard discussed on April 9, 2024 …
-
5:46 PM
Ticket #15022 (Blast protein should align loaded structures even when raw query ...) closed by Zach Pearson
-
fixed
-
5:02 PM
Ticket #15099 (Color a surface using volume data at a range of offsets) closed by Tom Goddard
-
fixed: Done. In ChimeraX daily builds dated May 2, 2024 or later.
I've …
-
5:00 PM
Ticket #15099 (Color a surface using volume data at a range of offsets) created by shawn.zheng@…
-
Shawn Zheng asked about coloring a membrane surface from a tomogram …
-
4:27 PM
Ticket #15097 (Surface created by surface smooth command not saved in sessions) closed by Tom Goddard
-
fixed: Fixed.
Command surface smooth created new surfaces but did not set …
-
4:23 PM
Ticket #15098 (Saving a session while a BLAST job is in progress crashes ChimeraX) created by Zach Pearson
-
4:13 PM
Ticket #15097 (Surface created by surface smooth command not saved in sessions) created by goddard@…
-
[…]
-
3:57 PM
Ticket #15096 (Crash in garbage collection) created by ts387@…
-
[…]
-
3:31 PM
Ticket #15088 (Qt path override + missing Medical Image dependency) closed by Greg Couch
-
limitation: The path override messages can only be fixed by a newer version of Qt.
-
3:22 PM
Ticket #15082 (openmm.OpenMMException: There is no registered Platform called "OpenCL") closed by Tom Goddard
-
not a bug: Taking out the ChimeraX code that sets OPENMM_PLUGIN_DIR environment …
-
3:19 PM
Ticket #15095 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Rainer,
Thanks for reporting this problem. It is fixed in the …
-
3:16 PM
Ticket #15094 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
2:22 PM
Ticket #15091 (glDrawBuffer: invalid operation) closed by Tom Goddard
-
can't reproduce: I think Linux might drop the OpenGL context, maybe when the machine …
-
1:48 PM
Ticket #15095 (Crash in garbage collection) created by r.machne@…
-
[…]
-
11:44 AM
Ticket #15094 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
11:11 AM
Ticket #15093 (Copick: crash in QCoPickTableModel) created by chimerax-bug-report@…
-
[…]
-
10:58 AM
Ticket #15085 (AlphaFold Prediction Requires Newer ChimeraX) closed by Tom Goddard
-
not a bug: Not sure what bug you are reporting. If it is that AlphaFold is not …
-
10:41 AM
Ticket #15089 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:36 AM
Ticket #15087 (pydantic dependency not installed (on upgrade?)) closed by Eric Pettersen
-
duplicate
-
9:37 AM
Ticket #15092 (ArtiaX: smbprotocol: TimeoutError) created by chimerax-bug-report@…
-
[…]
-
9:33 AM
Ticket #15091 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
-
[…]
-
9:28 AM
Ticket #15084 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) closed by Eric Pettersen
-
duplicate
-
9:17 AM
Ticket #15081 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
8:55 AM
Ticket #15090 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
-
[…]
-
8:18 AM
Ticket #15089 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
6:24 AM
Ticket #15088 (Qt path override + missing Medical Image dependency) created by Tristan Croll
-
[…]
-
12:54 AM
Ticket #15087 (pydantic dependency not installed (on upgrade?)) created by chimerax-bug-report@…
-
[…]
-
12:53 AM
Ticket #15086 (pydantic dependency not installed (on upgrade?)) created by chimerax-bug-report@…
-
[…]
May 1, 2024:
-
5:05 PM
Ticket #15058 (Errors upgrading/installing ChimeraX) closed by Greg Couch
-
worksforme: Tt looks like the /usr/bin/chimerax-daily symbolic link was removed by …
-
4:27 PM
Ticket #14976 (Make blastprotein command load structures and alignment without GUI) reopened by Elaine Meng
-
wording (as per comment 27) still not changed as of UCSF ChimeraX …
-
4:23 PM
Ticket #15022 (Blast protein should align loaded structures even when raw query ...) reopened by Zach Pearson
-
Please reopen tickets when there are new concerns.
-
4:05 PM
Ticket #15085 (AlphaFold Prediction Requires Newer ChimeraX) created by parthiban.biotechnology@…
-
[…]
-
2:02 PM
Ticket #15084 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) created by chimerax-bug-report@…
-
[…]
-
2:02 PM
Ticket #15083 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) created by chimerax-bug-report@…
-
[…]
-
1:00 PM
Ticket #15082 (openmm.OpenMMException: There is no registered Platform called "OpenCL") created by goddard@…
-
[…]
-
12:06 PM
Ticket #15081 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
11:33 AM
Ticket #15074 (perframe/coordset: commands executed with old coordset) closed by Tom Goddard
-
not a bug: We discussed two ways to play through the trajectory showing hydrogen …
-
10:52 AM
Ticket #15080 (Better handling of multi-character chain IDs for Modeller) created by Elaine Meng
-
There is something seriously weird about this structure, and I can …
-
8:38 AM
Ticket #15078 (Crash handling text input) closed by Eric Pettersen
-
can't reproduce
-
1:45 AM
Ticket #15079 (OpenMM on PyPi) created by Tristan Croll
-
[…]
Apr 30, 2024:
-
8:27 PM
Ticket #15078 (Crash handling text input) created by chimerax-bug-report@…
-
[…]
-
8:02 PM
Training edited by Tom Goddard
-
(diff)
-
8:02 PM
Training edited by Tom Goddard
-
(diff)
-
1:59 PM
Ticket #15077 (ArtiaX: move_children: boolean index did not match indexed array along ...) created by chimerax-bug-report@…
-
[…]
-
1:32 PM
Ticket #15076 (ArtiaX: delete_selected_particles: arrays used as indices must be of ...) created by chimerax-bug-report@…
-
[…]
-
12:20 PM
2024-5-2 edited by Zach Pearson
-
(diff)
-
11:42 AM
Ticket #15075 (Copick: QCoPickTableModel: child item has no parent) created by chimerax-bug-report@…
-
[…]
-
11:13 AM
Dev2024-5-6 created by Tom Goddard
-
11:12 AM
Dev2024-4-29 edited by Tom Goddard
-
(diff)
-
11:12 AM
2024-5-2 created by Tom Goddard
-
11:10 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
10:43 AM
Ticket #15074 (perframe/coordset: commands executed with old coordset) created by Ute.Roehrig@…
-
I'm trying to visualize the hydrogen bonds of a small molecule in …
-
9:22 AM
Ticket #15073 (Crash in QItemSelectionModel::isSelected) closed by Eric Pettersen
-
can't reproduce
-
9:19 AM
Ticket #15073 (Crash in QItemSelectionModel::isSelected) created by chimerax-bug-report@…
-
[…]
-
9:08 AM
Ticket #15071 (Message going to dead viewer's status) closed by Eric Pettersen
-
can't reproduce
-
9:02 AM
Ticket #15070 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Haaris,
Thanks for reporting this problem. It is fixed in the …
-
8:55 AM
Ticket #15069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen
-
duplicate
-
7:15 AM
Ticket #15072 (Crash setting active window) created by lp212@…
-
[…]
-
6:44 AM
Ticket #15071 (Message going to dead viewer's status) created by chimerax-bug-report@…
-
[…]
-
3:19 AM
Ticket #15070 (Crash in garbage collection) created by haaris.safdari@…
-
[…]
Apr 29, 2024:
-
11:41 PM
Ticket #15069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
-
[…]
-
5:11 PM
Ticket #15054 (Can't save session because NewerVersionQuery not listed) closed by Greg Couch
-
fixed: And the ChimeraX that has this problem is a daily build from 27 …
-
12:05 PM
Ticket #15041 (Session save failed: Check Water Viewer, Residue already deleted) closed by Eric Pettersen
-
duplicate
-
12:00 PM
Ticket #15055 (AlphaFold Prediction Requires Newer ChimeraX) closed by Elaine Meng
-
fixed: already fixed for daily build
-
11:44 AM
Ticket #15067 (QKeyEvent in drag/drop code) closed by Eric Pettersen
-
duplicate: Duplicate of #14793
-
11:40 AM
Ticket #15066 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
11:38 AM
Ticket #15065 (Crash as menu teardown makes previous window key) closed by Eric Pettersen
-
can't reproduce
-
11:32 AM
Ticket #15063 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
11:31 AM
Ticket #15062 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
11:28 AM
Ticket #15061 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
11:25 AM
Ticket #15059 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
11:23 AM
Ticket #15068 (ArtiaX: 'MarkerSetPlus' object has no attribute 'session') created by utz.ermel@…
-
[…]
-
11:21 AM
Ticket #15057 (Crash in garbage collection) closed by Eric Pettersen
-
can't reproduce: We've still got some crashes in garbage collection, just not as many.
-
11:19 AM
Ticket #15056 (Crash configuring display) closed by Eric Pettersen
-
can't reproduce
-
11:10 AM
Ticket #15052 (Crash in python_instances_of_class) closed by Eric Pettersen
-
duplicate: Hi George,
Thanks for reporting this problem. It was fixed in a …
-
11:06 AM
Ticket #15051 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by Eric Pettersen
-
duplicate
-
11:03 AM
Ticket #15050 (Add Charge: loop that checks for isolated atoms within residues: list ...) closed by Eric Pettersen
-
fixed: Hi Mitch,
Thanks for reporting this problem. I have committed a fix …
-
10:42 AM
Ticket #15049 (Crash changing screen/display settings, possibly while in full screen mode) closed by Eric Pettersen
-
can't reproduce
-
10:37 AM
Ticket #15047 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
10:35 AM
Ticket #15046 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
9:12 AM
Ticket #15067 (QKeyEvent in drag/drop code) created by chimerax-bug-report@…
-
[…]
-
6:45 AM
Ticket #15066 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
5:42 AM
Ticket #15065 (Crash as menu teardown makes previous window key) created by chimerax-bug-report@…
-
[…]
-
3:15 AM
Ticket #15064 (Mouse wheel: no Qt.KeyboardModifier.CtrlModifier) created by haaris.safdari@…
-
[…]
-
2:59 AM
Ticket #15063 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
2:45 AM
Ticket #15062 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
1:14 AM
Ticket #15061 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
Apr 28, 2024:
-
6:11 PM
Ticket #15060 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
-
[…]
-
2:26 PM
Ticket #15059 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
9:16 AM
Ticket #15058 (Errors upgrading/installing ChimeraX) created by bshaanan@…
-
[…]
problem_installing_daily_20.04.out
-
8:38 AM
Ticket #15057 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
4:33 AM
Ticket #15056 (Crash configuring display) created by chimerax-bug-report@…
-
[…]
-
3:42 AM
Ticket #15055 (AlphaFold Prediction Requires Newer ChimeraX) created by 1799189085@…
-
[…]
Apr 27, 2024:
-
6:43 PM
Ticket #15054 (Can't save session because NewerVersionQuery not listed) created by jiaxuan.cheng@…
-
[…]
-
11:19 AM
Ticket #15053 (Segmentation cursors don't open if seg tool opened after view layout ...) created by Zach Pearson
-
11:17 AM
Ticket #9850 (Issues when Segmentations tool is already open w/o data when new DICOM ...) closed by Zach Pearson
-
fixed: Was fixed by …
-
8:28 AM
Ticket #15052 (Crash in python_instances_of_class) created by gghanim@…
-
[…]
-
8:17 AM
Ticket #15051 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by chimerax-bug-report@…
-
[…]
Apr 26, 2024:
-
8:33 PM
Ticket #15050 (Add Charge: loop that checks for isolated atoms within residues: list ...) created by alphataubio@…
-
[…]
mincell.20nm-2.pdb
-
5:10 PM
Ticket #15049 (Crash changing screen/display settings, possibly while in full screen mode) created by chimerax-bug-report@…
-
[…]
-
4:04 PM
Ticket #15048 (Bundle builder produces incorrect metadata if "category" is not a list) closed by Zach Pearson
-
fixed: [https://github.com/RBVI/ChimeraX/commit/84a01dd48d7e88f93a44bba54e0962 …
-
3:48 PM
Ticket #15048 (Bundle builder produces incorrect metadata if "category" is not a list) created by Zach Pearson
-
[chimerax]
category = "General"
and
[chimerax]
categories = …
-
2:59 PM
Ticket #9267 (make build-from-scratch fails on Linux) closed by Zach Pearson
-
fixed: Good point.
-
2:26 PM
Ticket #10424 (KeyError in tasks after opening then closing session with BLAST failure) closed by Zach Pearson
-
fixed: It is …
-
2:25 PM
Ticket #14510 (KeyError restoring tasks) closed by Zach Pearson
-
fixed: It is …
-
2:25 PM
Ticket #14404 (Session restore, tasks: KeyError) closed by Zach Pearson
-
fixed: It is …
-
2:25 PM
Ticket #10391 (Session restore: KeyError deleting tasks) closed by Zach Pearson
-
fixed: It is …
-
1:31 PM
Ticket #15022 (Blast protein should align loaded structures even when raw query ...) closed by Zach Pearson
-
fixed
-
1:27 PM
Ticket #15047 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
1:22 PM
Ticket #15046 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
12:44 PM
Ticket #14733 (Session restore: blast protein: KeyError: '_protein_chain') closed by Zach Pearson
-
can't reproduce: Most likely. Can't reproduce without the session.
-
12:43 PM
Ticket #15029 (value error traceback when checking "List only best chain per hit" ...) closed by Zach Pearson
-
fixed: [https://github.com/RBVI/ChimeraX/commit/973f037a2349527d06167b1cee825b …
-
12:30 PM
Ticket #15045 (Crash showing Save File dialog) closed by Tom Goddard
-
can't reproduce
-
12:25 PM
Ticket #15044 (Crash in event loop in NSMenuBarTrackingSession, terminated by SIGKILL) closed by Tom Goddard
-
can't reproduce
-
12:21 PM
Ticket #15043 (Crashed in garbage collection) closed by Tom Goddard
-
duplicate
-
12:06 PM
Ticket #15045 (Crash showing Save File dialog) created by anmugo@…
-
[…]
-
12:04 PM
Ticket #15040 (Crash showing rapid access in QStackedWidget_setCurrentWidget() while ...) closed by Tom Goddard
-
can't reproduce
-
11:58 AM
Ticket #15039 (Crash in garbage collection) closed by Tom Goddard
-
duplicate
-
11:56 AM
Ticket #15038 (Crash in garbage collection) closed by Tom Goddard
-
duplicate
-
11:55 AM
Ticket #15037 (Garbage collection crash) closed by Tom Goddard
-
duplicate
-
11:53 AM
Ticket #15036 (Opening session: RuntimeError: LZ4F_decompress failed) closed by Tom Goddard
-
limitation
-
8:18 AM
Ticket #15044 (Crash in event loop in NSMenuBarTrackingSession, terminated by SIGKILL) created by chimerax-bug-report@…
-
[…]
-
8:16 AM
Ticket #15043 (Crashed in garbage collection) created by haaris.safdari@…
-
[…]
-
5:36 AM
Ticket #15042 (ArtiaX importing Copick tool: ModuleNotFoundError: No module named ...) created by chimerax-bug-report@…
-
[…]
-
3:16 AM
Ticket #15041 (Session save failed: Check Water Viewer, Residue already deleted) created by chimerax-bug-report@…
-
[…]
-
2:05 AM
Ticket #15040 (Crash showing rapid access in QStackedWidget_setCurrentWidget() while ...) created by chimerax-bug-report@…
-
[…]
Apr 25, 2024:
-
10:05 PM
Ticket #15039 (Crash in garbage collection) created by yakonfire@…
-
[…]
-
9:57 PM
Ticket #15038 (Crash in garbage collection) created by yakonfire@…
-
[…]
-
9:40 PM
Ticket #15037 (Garbage collection crash) created by yakonfire@…
-
[…]
-
8:02 PM
2024-4-25 edited by Scooter Morris
-
(diff)
-
7:24 PM
Ticket #15036 (Opening session: RuntimeError: LZ4F_decompress failed) created by chimerax-bug-report@…
-
[…]
-
6:29 PM
Ticket #15035 (Revert Greek/special characters to plain text on output) created by mmmtnez@…
-
I just downloaded a pdb file from AlphaFold DB …
-
6:03 PM
Ticket #15033 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Mitch,
Thanks for reporting this problem. It is fixed in the …
-
6:02 PM
Ticket #15031 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate: Hi Daniel,
Thanks for reporting this problem. It is fixed in the …
-
5:49 PM
Ticket #15001 (Links to example files in Toolshed Building and Distributing bundles ...) closed by Eric Pettersen
-
fixed: Re-enabled zip download while retaining references to GitHub sample code.
-
5:08 PM
2024-4-25 edited by Tom Goddard
-
(diff)
-
3:37 PM
Ticket #15030 (Dock Prep ChargeError) closed by Eric Pettersen
-
duplicate
-
3:27 PM
Ticket #15034 (Better user-facing message when sessions require newer internal bundles) created by Eric Pettersen
-
When a session needs a newer version of an internal bundle, like …
-
3:25 PM
Ticket #15033 (Crash in garbage collection) created by alphataubio@…
-
[…]
-
3:22 PM
Ticket #15027 (Update atomic bundle) closed by Eric Pettersen
-
not a bug: Hi Nishant,
The Atomic bundle is shipped as part of the ChimeraX app, …
-
2:25 PM
Ticket #15032 (VR user interface suggestions) created by scooter@…
-
From: Scooter Morris
Subject: VR comments
Date: April 24, 2024 at …
-
2:22 PM
Ticket #15026 (Graphics crash, macOS 14.4.1, Intel Iris Plus Graphics) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
2:10 PM
NIAID2024 edited by Elaine Meng
-
(diff)
-
2:08 PM
NIAID2024 edited by Elaine Meng
-
(diff)
-
2:04 PM
NIAID2024 edited by Elaine Meng
-
(diff)
-
2:00 PM
Ticket #15031 (Crash in garbage collection) created by ddrichma@…
-
[…]
-
11:45 AM
Ticket #15030 (Dock Prep ChargeError) created by chimerax-bug-report@…
-
[…]
-
10:44 AM
Ticket #15029 (value error traceback when checking "List only best chain per hit" ...) created by Elaine Meng
-
[…]
Apr 24, 2024:
-
6:50 PM
Ticket #15028 (Session save failed: Can't convert object of type: <enum 'Matrix'>) closed by Greg Couch
-
limitation: Sessions support IntEnum.
-
6:27 PM
Ticket #15028 (Session save failed: Can't convert object of type: <enum 'Matrix'>) created by goddard@…
-
[…]
-
5:04 PM
Ticket #15027 (Update atomic bundle) created by nm7155@…
-
[…]
-
3:31 PM
Ticket #15025 (ChimeraX bug report submission) closed by Zach Pearson
-
fixed: I've added a check for sequence only results. A summary will be …
-
3:23 PM
Ticket #15026 (Graphics crash, macOS 14.4.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
-
[…]
-
2:45 PM
Ticket #15025 (ChimeraX bug report submission) created by Elaine Meng
-
[…]
-
2:35 PM
Ticket #15023 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
2:33 PM
Ticket #15024 (Realsense: Couldn't resolve requests) created by ceubanks@…
-
[…]
error1.PNG
-
1:27 PM
Ticket #15023 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
11:53 AM
Ticket #15022 (Blast protein should align loaded structures even when raw query ...) created by goddard@…
-
[…]
-
11:46 AM
Ticket #10127 (DICOM session does not restore thresholds or colors) closed by Zach Pearson
-
fixed: This commit …
-
11:38 AM
Ticket #15021 (Spec given to 'hbonds' selects nothing) closed by Eric Pettersen
-
nonchimerax: Well, because it seems that the ligand "residue" is two residues when …
-
11:29 AM
Ticket #14917 (Angle tool allows decimal places to go to -1) closed by Eric Pettersen
-
fixed: Fix available in next daily build.
(fix: …
-
11:26 AM
Ticket #15020 (Level popup persists after PlaneViewer closes) closed by Zach Pearson
-
fixed: Closed by …
-
11:24 AM
Ticket #15018 (Showing molecular surface: Unable to allocate 4.41 MiB for an array) closed by Tom Goddard
-
limitation: User opened an mmCIF file of a virus with 780 chains then tried to …
-
11:22 AM
Ticket #15021 (Spec given to 'hbonds' selects nothing) created by Elaine Meng
-
[…]
-
11:19 AM
Ticket #15016 (glDrawBuffer: invalid operation) closed by Tom Goddard
-
can't reproduce: Possible OpenGL graphics driver bug. But I suspect there is something …
-
10:51 AM
Ticket #10389 (wrapped C/C++ object of type DICOMTable has been deleted) closed by Zach Pearson
-
fixed: Should have been fixed by …
-
10:31 AM
Ticket #15020 (Level popup persists after PlaneViewer closes) created by Zach Pearson
-
While fixing #14618 I discovered that if I timed it just right then …
-
10:27 AM
Ticket #14618 (Cancel mouse movement callback if viewers closed) closed by Zach Pearson
-
fixed: [https://github.com/RBVI/ChimeraX/commit/2243441636ccc44cd3454c32544681 …
-
9:10 AM
Ticket #15019 (Match structure to itself: list index out of range) closed by Eric Pettersen
-
duplicate
-
8:58 AM
Ticket #15015 (Crash in garbage collection) closed by Eric Pettersen
-
can't reproduce: This is after the fix I made, so there still is a less-frequent …
-
8:51 AM
Ticket #15014 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
8:50 AM
Ticket #15012 (Crash in garbage collection) closed by Eric Pettersen
-
duplicate
-
6:57 AM
Ticket #15019 (Match structure to itself: list index out of range) created by chimerax-bug-report@…
-
[…]
-
4:44 AM
Ticket #15018 (Showing molecular surface: Unable to allocate 4.41 MiB for an array) created by chimerax-bug-report@…
-
[…]
-
2:46 AM
Ticket #15017 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
-
[…]
-
1:12 AM
Ticket #15016 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
-
[…]
Apr 23, 2024:
-
11:56 PM
Ticket #15015 (Crash in garbage collection) created by chimerax-bug-report@…
-
[…]
-
10:21 PM
Ticket #14976 (Make blastprotein command load structures and alignment without GUI) closed by Zach Pearson
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
