| 1 | Microsoft Windows [Version 10.0.22631.3447]
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| 2 | (c) Microsoft Corporation. Alle Rechte vorbehalten.
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| 3 |
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| 4 | C:\Users\Tennstedt>"C:\Program Files\ChimeraX\bin\ChimeraX-console.exe" --debug
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| 5 | NOTE: Initializing core
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| 6 | Toolshed: __init__ False False None
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| 7 | Toolshed: cache dir: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\Cache\1.8\toolshed
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| 8 | Toolshed: site dir: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\1.8\Python311\site-packages
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| 9 | Toolshed: loading bundles
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| 10 | available bundle cache has not been initialized yet
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| 11 | Toolshed: reload False False
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| 12 | Toolshed: _bundle_cache False
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| 13 | Toolshed: InstalledBundleCache.load: rebuild_cache False
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| 14 | Toolshed: InstalledBundleCache._read_cache: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\Cache\1.8\toolshed\bundle_info.cache
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| 15 | Toolshed: _is_cache_newer
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| 16 | Toolshed: InstalledBundleCache._read_cache: 163 bundles
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| 17 | Toolshed: InstalledBundleCache.load: using cached data
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| 18 | Toolshed: register bundle ChimeraX-Arrays 1.1
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| 19 | Toolshed: register bundle ChimeraX-ToolshedUtils 1.2.4
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| 20 | Toolshed: register bundle ChimeraX-Core 1.8.dev202405040553
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| 21 | Toolshed: register bundle ChimeraX-RemoteControl 1.0
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| 22 | Toolshed: delay_registration remotecontrol xmlrpc
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| 23 | Toolshed: register bundle ChimeraX-SmoothLines 1.0
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| 24 | Toolshed: delay_registration smoothlines
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| 25 | Toolshed: register bundle ChimeraX-ListInfo 1.2.2
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| 26 | Toolshed: delay_registration info
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| 27 | Toolshed: register bundle ChimeraX-Segment 1.0.1
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| 28 | Toolshed: delay_registration segmentation
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| 29 | Toolshed: register bundle ChimeraX-Movie 1.0
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| 30 | Toolshed: delay_registration movie
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| 31 | Toolshed: register bundle ChimeraX-IO 1.0.1
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| 32 | Toolshed: register bundle ChimeraX-WebServices 1.1.3
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| 33 | Toolshed: register bundle ChimeraX-Test 1.0
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| 34 | Toolshed: delay_registration debug test
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| 35 | Toolshed: delay_registration debug exectest
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| 36 | Toolshed: delay_registration debug expectfail
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| 37 | Toolshed: register bundle ChimeraX-AmberInfo 1.0
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| 38 | Toolshed: register bundle ChimeraX-MCopy 1.0
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| 39 | Toolshed: delay_registration mcopy
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| 40 | Toolshed: register bundle ChimeraX-ToQuest 1.0
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| 41 | Toolshed: register bundle ChimeraX-RotamerLibMgr 4.0
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| 42 | Toolshed: register bundle ChimeraX-PresetMgr 1.1.1
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| 43 | Toolshed: delay_registration preset
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| 44 | Toolshed: register bundle ChimeraX-AtomicLibrary 14.0.3
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| 45 | Toolshed: register bundle ChimeraX-SchemeMgr 1.0
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| 46 | Toolshed: register bundle ChimeraX-Geometry 1.3
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| 47 | Toolshed: register bundle ChimeraX-RestServer 1.2
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| 48 | Toolshed: delay_registration remotecontrol rest
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| 49 | Toolshed: register bundle ChimeraX-Struts 1.0.1
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| 50 | Toolshed: delay_registration struts
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| 51 | Toolshed: delay_registration ~struts
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| 52 | Toolshed: register bundle ChimeraX-DataFormats 1.2.3
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| 53 | Toolshed: register bundle ChimeraX-SpaceNavigator 1.0
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| 54 | Toolshed: delay_registration device snav
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| 55 | Toolshed: register bundle ChimeraX-Dssp 2.0
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| 56 | Toolshed: register bundle ChimeraX-RotamerLibsDynameomics 2.0
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| 57 | Toolshed: register bundle ChimeraX-AtomSearch 2.0.1
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| 58 | Toolshed: register bundle ChimeraX-Crystal 1.0
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| 59 | Toolshed: register bundle ChimeraX-ConnectStructure 2.0.1
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| 60 | Toolshed: register bundle ChimeraX-RotamerLibsRichardson 2.0
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| 61 | Toolshed: register bundle ChimeraX-Shape 1.0.1
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| 62 | Toolshed: delay_registration shape boxPath
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| 63 | Toolshed: delay_registration shape cone
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| 64 | Toolshed: delay_registration shape cylinder
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| 65 | Toolshed: delay_registration shape ellipsoid
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| 66 | Toolshed: delay_registration shape icosahedron
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| 67 | Toolshed: delay_registration shape rectangle
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| 68 | Toolshed: delay_registration shape ribbon
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| 69 | Toolshed: delay_registration shape sphere
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| 70 | Toolshed: delay_registration shape triangle
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| 71 | Toolshed: delay_registration shape tube
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| 72 | Toolshed: register bundle ChimeraX-IMOD 1.0
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| 73 | Toolshed: register bundle ChimeraX-Graphics 1.1.1
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| 74 | Toolshed: register bundle ChimeraX-RotamerLibsDunbrack 2.0
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| 75 | Toolshed: register bundle ChimeraX-LookingGlass 1.1
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| 76 | Toolshed: delay_registration lookingglass
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| 77 | Toolshed: delay_registration device lookingglass
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| 78 | Toolshed: register bundle ChimeraX-vrml 1.0
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| 79 | Toolshed: register bundle ChimeraX-WebCam 1.0.2
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| 80 | Toolshed: delay_registration webcam
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| 81 | Toolshed: delay_registration device webcam
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| 82 | Toolshed: register bundle ChimeraX-Vive 1.1
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| 83 | Toolshed: delay_registration vr
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| 84 | Toolshed: delay_registration xr
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| 85 | Toolshed: delay_registration device vr
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| 86 | Toolshed: register bundle ChimeraX-MouseModes 1.2
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| 87 | Toolshed: delay_registration ui mousemode
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| 88 | Toolshed: delay_registration mousemode
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| 89 | Toolshed: register bundle ChimeraX-MapData 2.0
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| 90 | Toolshed: register bundle ChimeraX-EMDB-SFF 1.0
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| 91 | Toolshed: register bundle ChimeraX-IUPAC 1.0
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| 92 | Toolshed: register bundle ChimeraX-ImageFormats 1.2
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| 93 | Toolshed: register bundle ChimeraX-Registration 1.1.2
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| 94 | Toolshed: delay_registration registration status
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| 95 | Toolshed: delay_registration registration file
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| 96 | Toolshed: register bundle ChimeraX-WavefrontOBJ 1.0
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| 97 | Toolshed: register bundle ChimeraX-SDF 2.0.2
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| 98 | Toolshed: register bundle ChimeraX-RNALayout 1.0
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| 99 | Toolshed: delay_registration rna path
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| 100 | Toolshed: delay_registration rna model
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| 101 | Toolshed: register bundle ChimeraX-mmCIF 2.14.1
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| 102 | Toolshed: register bundle ChimeraX-BugReporter 1.0.1
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| 103 | Toolshed: register bundle ChimeraX-CageBuilder 1.0.1
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| 104 | Toolshed: delay_registration cage
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| 105 | Toolshed: register bundle ChimeraX-Modeller 1.5.15
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| 106 | Toolshed: delay_registration modeller comparative
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| 107 | Toolshed: delay_registration modeller loops
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| 108 | Toolshed: delay_registration modeller refine
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| 109 | Toolshed: delay_registration modeller scores
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| 110 | Toolshed: register bundle ChimeraX-CrystalContacts 1.0.1
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| 111 | Toolshed: delay_registration crystalcontacts
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| 112 | Toolshed: register bundle ChimeraX-ViewDockX 1.4.1
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| 113 | Toolshed: delay_registration viewdockx
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| 114 | Toolshed: delay_registration viewdockx down
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| 115 | Toolshed: delay_registration viewdockx up
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| 116 | Toolshed: register bundle ChimeraX-AlignmentMatrices 2.1
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| 117 | Toolshed: register bundle ChimeraX-Markers 1.0.1
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| 118 | Toolshed: delay_registration marker
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| 119 | Toolshed: register bundle ChimeraX-VolumeMenu 1.0.1
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| 120 | Toolshed: register bundle ChimeraX-Shortcuts 1.1.1
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| 121 | Toolshed: delay_registration ks
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| 122 | Toolshed: delay_registration snapshot
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| 123 | Toolshed: register bundle ChimeraX-Map 1.2
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| 124 | Toolshed: delay_registration volume
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| 125 | Toolshed: delay_registration molmap
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| 126 | Toolshed: delay_registration measure mapstats
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| 127 | Toolshed: delay_registration measure mapvalues
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| 128 | Toolshed: register bundle ChimeraX-Neuron 1.0
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| 129 | Toolshed: register bundle ChimeraX-HKCage 1.3
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| 130 | Toolshed: delay_registration hkcage
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| 131 | Toolshed: register bundle ChimeraX-VIPERdb 1.0
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| 132 | Toolshed: register bundle ChimeraX-AlignmentAlgorithms 2.0.2
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| 133 | Toolshed: register bundle ChimeraX-Crosslinks 1.0
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| 134 | Toolshed: delay_registration crosslinks
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| 135 | Toolshed: register bundle ChimeraX-SeqView 2.11.2
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| 136 | Toolshed: register bundle ChimeraX-ModelPanel 1.5
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| 137 | Toolshed: register bundle ChimeraX-PDBMatrices 1.0
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| 138 | Toolshed: register bundle ChimeraX-TapeMeasure 1.0
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| 139 | Toolshed: register bundle ChimeraX-Maestro 1.9.1
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| 140 | Toolshed: register bundle ChimeraX-ChangeChains 1.1
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| 141 | Toolshed: delay_registration changechains
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| 142 | Toolshed: register bundle ChimeraX-Dicom 1.2
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| 143 | Toolshed: register bundle ChimeraX-Atomic 1.57
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| 144 | Toolshed: delay_registration log chains
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| 145 | Toolshed: delay_registration combine
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| 146 | Toolshed: delay_registration pbond
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| 147 | Toolshed: delay_registration ~pbond
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| 148 | Toolshed: register bundle ChimeraX-Alignments 2.12.6
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| 149 | Toolshed: delay_registration sequence
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| 150 | Toolshed: register bundle ChimeraX-FunctionKey 1.0.1
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| 151 | Toolshed: delay_registration ui functionkey
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| 152 | Toolshed: delay_registration functionkey
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| 153 | Toolshed: register bundle ChimeraX-UnitCell 1.0.1
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| 154 | Toolshed: delay_registration unitcell
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| 155 | Toolshed: register bundle ChimeraX-Centroids 1.4
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| 156 | Toolshed: delay_registration define centroid
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| 157 | Toolshed: register bundle ChimeraX-UI 1.39
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| 158 | Toolshed: delay_registration ui
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| 159 | Toolshed: delay_registration tool
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| 160 | Toolshed: register bundle ChimeraX-StructMeasure 1.2.1
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| 161 | Toolshed: register bundle ChimeraX-ShowSequences 1.0.3
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| 162 | Toolshed: register bundle ChimeraX-RenumberResidues 1.1
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| 163 | Toolshed: delay_registration renumber
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| 164 | Toolshed: register bundle ChimeraX-Help 1.2.2
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| 165 | Toolshed: delay_registration help
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| 166 | Toolshed: register bundle ChimeraX-FileHistory 1.0.1
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| 167 | Toolshed: register bundle ChimeraX-OpenCommand 1.13.4
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| 168 | Toolshed: delay_registration open
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| 169 | Toolshed: delay_registration usage open
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| 170 | Toolshed: register bundle ChimeraX-MapSeries 2.1.1
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| 171 | Toolshed: delay_registration vseries
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| 172 | Toolshed: delay_registration measure motion
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| 173 | Toolshed: register bundle ChimeraX-Tug 1.0.1
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| 174 | Toolshed: delay_registration tug
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| 175 | Toolshed: register bundle ChimeraX-CoreFormats 1.2
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| 176 | Toolshed: register bundle ChimeraX-StdCommands 1.16.4
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| 177 | Toolshed: delay_registration alias
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| 178 | Toolshed: delay_registration alias list
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| 179 | Toolshed: delay_registration alias delete
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| 180 | Toolshed: delay_registration ~alias
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| 181 | Toolshed: delay_registration align
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| 182 | Toolshed: delay_registration altlocs
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| 183 | Toolshed: delay_registration angle
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| 184 | Toolshed: delay_registration camera
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| 185 | Toolshed: delay_registration cartoon
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| 186 | Toolshed: delay_registration ~cartoon
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| 187 | Toolshed: delay_registration cd
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| 188 | Toolshed: delay_registration clip
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| 189 | Toolshed: delay_registration ~clip
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| 190 | Toolshed: delay_registration close
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| 191 | Toolshed: delay_registration cofr
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| 192 | Toolshed: delay_registration ~cofr
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| 193 | Toolshed: delay_registration color
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| 194 | Toolshed: delay_registration colour
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| 195 | Toolshed: delay_registration color delete
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| 196 | Toolshed: delay_registration color list
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| 197 | Toolshed: delay_registration color name
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| 198 | Toolshed: delay_registration color show
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| 199 | Toolshed: delay_registration colordef
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| 200 | Toolshed: delay_registration ~colordef
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| 201 | Toolshed: delay_registration colourdef
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| 202 | Toolshed: delay_registration ~colourdef
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| 203 | Toolshed: delay_registration coordset
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| 204 | Toolshed: delay_registration crossfade
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| 205 | Toolshed: delay_registration defattr
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| 206 | Toolshed: delay_registration delete
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| 207 | Toolshed: delay_registration dssp
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| 208 | Toolshed: delay_registration exit
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| 209 | Toolshed: delay_registration quit
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| 210 | Toolshed: delay_registration fly
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| 211 | Toolshed: delay_registration getcrd
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| 212 | Toolshed: delay_registration graphics
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| 213 | Toolshed: delay_registration hide
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| 214 | Toolshed: delay_registration ~show
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| 215 | Toolshed: delay_registration ~display
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| 216 | Toolshed: delay_registration lighting
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| 217 | Toolshed: delay_registration lighting model
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| 218 | Toolshed: delay_registration material
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| 219 | Toolshed: delay_registration measure buriedarea
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| 220 | Toolshed: delay_registration measure center
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| 221 | Toolshed: delay_registration measure convexity
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| 222 | Toolshed: delay_registration measure correlation
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| 223 | Toolshed: delay_registration measure inertia
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| 224 | Toolshed: delay_registration measure length
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| 225 | Toolshed: delay_registration measure rotation
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| 226 | Toolshed: delay_registration measure symmetry
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| 227 | Toolshed: delay_registration move
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| 228 | Toolshed: delay_registration move cofr
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| 229 | Toolshed: delay_registration palette
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| 230 | Toolshed: delay_registration perframe
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| 231 | Toolshed: delay_registration ~perframe
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| 232 | Toolshed: delay_registration pwd
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| 233 | Toolshed: delay_registration rainbow
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| 234 | Toolshed: delay_registration rename
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| 235 | Toolshed: delay_registration ribbon
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| 236 | Toolshed: delay_registration ~ribbon
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| 237 | Toolshed: delay_registration rmsd
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| 238 | Toolshed: delay_registration rock
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| 239 | Toolshed: delay_registration roll
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| 240 | Toolshed: delay_registration runscript
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| 241 | Toolshed: delay_registration select
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| 242 | Toolshed: delay_registration ~select
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| 243 | Toolshed: delay_registration set
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| 244 | Toolshed: delay_registration ~set
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| 245 | Toolshed: delay_registration setattr
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| 246 | Toolshed: delay_registration show
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| 247 | Toolshed: delay_registration display
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| 248 | Toolshed: delay_registration size
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| 249 | Toolshed: delay_registration split
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| 250 | Toolshed: delay_registration stop
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| 251 | Toolshed: delay_registration style
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| 252 | Toolshed: delay_registration sym
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| 253 | Toolshed: delay_registration tile
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| 254 | Toolshed: delay_registration ~tile
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| 255 | Toolshed: delay_registration time
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| 256 | Toolshed: delay_registration transparency
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| 257 | Toolshed: delay_registration turn
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| 258 | Toolshed: delay_registration undo
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| 259 | Toolshed: delay_registration redo
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| 260 | Toolshed: delay_registration usage
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| 261 | Toolshed: delay_registration version
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| 262 | Toolshed: delay_registration view
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| 263 | Toolshed: delay_registration wait
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| 264 | Toolshed: delay_registration windowsize
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| 265 | Toolshed: delay_registration wobble
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| 266 | Toolshed: delay_registration worm
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| 267 | Toolshed: delay_registration ~worm
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| 268 | Toolshed: delay_registration select zone
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| 269 | Toolshed: delay_registration zoom
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| 270 | Toolshed: register bundle ChimeraX-SideView 1.0.1
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| 271 | Toolshed: register bundle ChimeraX-PubChem 2.2
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| 272 | Toolshed: register bundle ChimeraX-SwapAA 2.0.1
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| 273 | Toolshed: delay_registration swapaa mousemode
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| 274 | Toolshed: register bundle ChimeraX-Smiles 2.1.2
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| 275 | Toolshed: register bundle ChimeraX-TaskManager 1.0
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| 276 | Toolshed: delay_registration taskman
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| 277 | Toolshed: register bundle ChimeraX-ItemsInspection 1.0.1
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| 278 | Toolshed: register bundle ChimeraX-Zone 1.0.1
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| 279 | Toolshed: delay_registration zone
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| 280 | Toolshed: register bundle ChimeraX-DockPrep 1.1.3
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| 281 | Toolshed: delay_registration dockprep
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| 282 | Toolshed: register bundle ChimeraX-Segger 1.0
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| 283 | Toolshed: delay_registration segger
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| 284 | Toolshed: register bundle ChimeraX-MedicalToolbar 1.0.2
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| 285 | Toolshed: register bundle ChimeraX-NMRSTAR 1.0.2
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| 286 | Toolshed: register bundle ChimeraX-ColorKey 1.5.5
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| 287 | Toolshed: delay_registration key
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| 288 | Toolshed: delay_registration ~key
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| 289 | Toolshed: register bundle ChimeraX-CellPack 1.0
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| 290 | Toolshed: register bundle ChimeraX-Label 1.1.9
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| 291 | Toolshed: delay_registration 2dlabels
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| 292 | Toolshed: delay_registration scalebar
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| 293 | Toolshed: delay_registration label
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| 294 | Toolshed: delay_registration ~label
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| 295 | Toolshed: register bundle ChimeraX-Mask 1.0.2
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| 296 | Toolshed: delay_registration volume mask
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| 297 | Toolshed: delay_registration volume onesmask
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| 298 | Toolshed: register bundle ChimeraX-PDBLibrary 1.0.4
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| 299 | Toolshed: register bundle ChimeraX-CommandLine 1.2.5
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| 300 | Toolshed: register bundle ChimeraX-Clashes 2.2.4
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| 301 | Toolshed: delay_registration clashes
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| 302 | Toolshed: delay_registration contacts
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| 303 | Toolshed: delay_registration ~clashes
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| 304 | Toolshed: delay_registration ~contacts
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| 305 | Toolshed: register bundle ChimeraX-AddH 2.2.6
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| 306 | Toolshed: delay_registration addh
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| 307 | Toolshed: register bundle ChimeraX-AlignmentHdrs 3.5
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| 308 | Toolshed: register bundle ChimeraX-STL 1.0.1
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| 309 | Toolshed: register bundle ChimeraX-Surface 1.0.1
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| 310 | Toolshed: delay_registration color electrostatic
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| 311 | Toolshed: delay_registration color sample
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| 312 | Toolshed: delay_registration color gradient
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| 313 | Toolshed: delay_registration color radial
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| 314 | Toolshed: delay_registration color cylindrical
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| 315 | Toolshed: delay_registration color height
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| 316 | Toolshed: delay_registration color image
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| 317 | Toolshed: delay_registration surface
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| 318 | Toolshed: delay_registration ~surface
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| 319 | Toolshed: delay_registration surface showPatches
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| 320 | Toolshed: delay_registration surface hidePatches
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| 321 | Toolshed: delay_registration surface close
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| 322 | Toolshed: delay_registration surface style
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| 323 | Toolshed: delay_registration surface squaremesh
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| 324 | Toolshed: delay_registration surface showall
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| 325 | Toolshed: delay_registration surface cap
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| 326 | Toolshed: delay_registration surface dust
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| 327 | Toolshed: delay_registration surface undust
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| 328 | Toolshed: delay_registration surface invertShown
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| 329 | Toolshed: delay_registration surface transform
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| 330 | Toolshed: delay_registration surface zone
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| 331 | Toolshed: delay_registration surface unzone
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| 332 | Toolshed: delay_registration surface check
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| 333 | Toolshed: delay_registration surface splitbycolor
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| 334 | Toolshed: delay_registration sop
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| 335 | Toolshed: delay_registration volume splitbyzone
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| 336 | Toolshed: delay_registration measure sasa
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| 337 | Toolshed: delay_registration measure volume
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| 338 | Toolshed: delay_registration measure area
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| 339 | Toolshed: delay_registration measure contactArea
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| 340 | Toolshed: register bundle ChimeraX-ColorGlobe 1.0
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| 341 | Toolshed: register bundle ChimeraX-AddCharge 1.5.17
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| 342 | Toolshed: delay_registration addcharge
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| 343 | Toolshed: delay_registration addcharge nonstd
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| 344 | Toolshed: register bundle ChimeraX-ReadPbonds 1.0.1
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| 345 | Toolshed: register bundle ChimeraX-BILD 1.0
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| 346 | Toolshed: register bundle ChimeraX-Bumps 1.0
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| 347 | Toolshed: delay_registration bumps
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| 348 | Toolshed: delay_registration cbumps
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| 349 | Toolshed: register bundle ChimeraX-NRRD 1.1
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| 350 | Toolshed: register bundle ChimeraX-RenderByAttr 1.4.1
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| 351 | Toolshed: register bundle ChimeraX-BuildStructure 2.12.1
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| 352 | Toolshed: delay_registration build
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| 353 | Toolshed: delay_registration bond
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|---|
| 354 | Toolshed: delay_registration ~bond
|
|---|
| 355 | Toolshed: delay_registration bond length
|
|---|
| 356 | Toolshed: register bundle ChimeraX-PickBlobs 1.0.1
|
|---|
| 357 | Toolshed: delay_registration measure blob
|
|---|
| 358 | Toolshed: register bundle ChimeraX-MDcrds 2.7
|
|---|
| 359 | Toolshed: register bundle ChimeraX-Mol2 2.0.3
|
|---|
| 360 | Toolshed: register bundle ChimeraX-ColorActions 1.0.4
|
|---|
| 361 | Toolshed: register bundle ChimeraX-Nucleotides 2.0.3
|
|---|
| 362 | Toolshed: delay_registration nucleotides
|
|---|
| 363 | Toolshed: delay_registration ~nucleotides
|
|---|
| 364 | Toolshed: register bundle ChimeraX-ButtonPanel 1.0.1
|
|---|
| 365 | Toolshed: delay_registration buttonpanel
|
|---|
| 366 | Toolshed: register bundle ChimeraX-ResidueFit 1.0.1
|
|---|
| 367 | Toolshed: delay_registration resfit
|
|---|
| 368 | Toolshed: register bundle ChimeraX-SelInspector 1.0
|
|---|
| 369 | Toolshed: register bundle ChimeraX-AlphaFold 1.0
|
|---|
| 370 | Toolshed: delay_registration alphafold match
|
|---|
| 371 | Toolshed: delay_registration alphafold fetch
|
|---|
| 372 | Toolshed: delay_registration alphafold search
|
|---|
| 373 | Toolshed: delay_registration alphafold predict
|
|---|
| 374 | Toolshed: delay_registration alphafold pae
|
|---|
| 375 | Toolshed: delay_registration alphafold contacts
|
|---|
| 376 | Toolshed: delay_registration alphafold dimers
|
|---|
| 377 | Toolshed: delay_registration alphafold monomers
|
|---|
| 378 | Toolshed: delay_registration alphafold interfaces
|
|---|
| 379 | Toolshed: register bundle ChimeraX-MMTF 2.2
|
|---|
| 380 | Toolshed: register bundle ChimeraX-BlastProtein 2.4.5
|
|---|
| 381 | Toolshed: delay_registration blastprotein
|
|---|
| 382 | Toolshed: delay_registration blastpdb
|
|---|
| 383 | Toolshed: delay_registration blastprotein pull
|
|---|
| 384 | Toolshed: register bundle ChimeraX-Log 1.1.6
|
|---|
| 385 | Toolshed: delay_registration echo
|
|---|
| 386 | Toolshed: delay_registration log
|
|---|
| 387 | Toolshed: register bundle ChimeraX-ChemGroup 2.0.1
|
|---|
| 388 | Toolshed: register bundle ChimeraX-BasicActions 1.1.2
|
|---|
| 389 | Toolshed: delay_registration name
|
|---|
| 390 | Toolshed: delay_registration name frozen
|
|---|
| 391 | Toolshed: delay_registration name delete
|
|---|
| 392 | Toolshed: delay_registration name list
|
|---|
| 393 | Toolshed: register bundle ChimeraX-MLP 1.1.1
|
|---|
| 394 | Toolshed: delay_registration mlp
|
|---|
| 395 | Toolshed: register bundle ChimeraX-coulombic 1.4.3
|
|---|
| 396 | Toolshed: delay_registration coulombic
|
|---|
| 397 | Toolshed: register bundle ChimeraX-ModelSeries 1.0.1
|
|---|
| 398 | Toolshed: delay_registration mseries
|
|---|
| 399 | Toolshed: register bundle ChimeraX-PDB 2.7.5
|
|---|
| 400 | Toolshed: register bundle ChimeraX-Segmentations 1.0.4
|
|---|
| 401 | Toolshed: delay_registration ui view
|
|---|
| 402 | Toolshed: register bundle ChimeraX-CheckWaters 1.4
|
|---|
| 403 | Toolshed: register bundle ChimeraX-ESMFold 1.0
|
|---|
| 404 | Toolshed: delay_registration esmfold contacts
|
|---|
| 405 | Toolshed: delay_registration esmfold fetch
|
|---|
| 406 | Toolshed: delay_registration esmfold match
|
|---|
| 407 | Toolshed: delay_registration esmfold pae
|
|---|
| 408 | Toolshed: delay_registration esmfold predict
|
|---|
| 409 | Toolshed: delay_registration esmfold search
|
|---|
| 410 | Toolshed: register bundle ChimeraX-MapFit 2.0
|
|---|
| 411 | Toolshed: delay_registration fitmap
|
|---|
| 412 | Toolshed: register bundle ChimeraX-gltf 1.0
|
|---|
| 413 | Toolshed: register bundle ChimeraX-MapEraser 1.0.1
|
|---|
| 414 | Toolshed: delay_registration volume erase
|
|---|
| 415 | Toolshed: register bundle ChimeraX-Storm 1.0
|
|---|
| 416 | Toolshed: register bundle ChimeraX-Positions 1.0
|
|---|
| 417 | Toolshed: register bundle ChimeraX-MapFilter 2.0.1
|
|---|
| 418 | Toolshed: delay_registration volume add
|
|---|
| 419 | Toolshed: delay_registration volume bin
|
|---|
| 420 | Toolshed: delay_registration volume boxes
|
|---|
| 421 | Toolshed: delay_registration volume copy
|
|---|
| 422 | Toolshed: delay_registration volume cover
|
|---|
| 423 | Toolshed: delay_registration volume falloff
|
|---|
| 424 | Toolshed: delay_registration volume flatten
|
|---|
| 425 | Toolshed: delay_registration volume flip
|
|---|
| 426 | Toolshed: delay_registration volume fourier
|
|---|
| 427 | Toolshed: delay_registration volume gaussian
|
|---|
| 428 | Toolshed: delay_registration volume laplacian
|
|---|
| 429 | Toolshed: delay_registration volume localCorrelation
|
|---|
| 430 | Toolshed: delay_registration volume maximum
|
|---|
| 431 | Toolshed: delay_registration volume minimum
|
|---|
| 432 | Toolshed: delay_registration volume median
|
|---|
| 433 | Toolshed: delay_registration volume morph
|
|---|
| 434 | Toolshed: delay_registration volume multiply
|
|---|
| 435 | Toolshed: delay_registration volume new
|
|---|
| 436 | Toolshed: delay_registration volume octant
|
|---|
| 437 | Toolshed: delay_registration volume ~octant
|
|---|
| 438 | Toolshed: delay_registration volume permuteAxes
|
|---|
| 439 | Toolshed: delay_registration volume resample
|
|---|
| 440 | Toolshed: delay_registration volume ridges
|
|---|
| 441 | Toolshed: delay_registration volume scale
|
|---|
| 442 | Toolshed: delay_registration volume sharpen
|
|---|
| 443 | Toolshed: delay_registration volume subtract
|
|---|
| 444 | Toolshed: delay_registration volume threshold
|
|---|
| 445 | Toolshed: delay_registration volume tile
|
|---|
| 446 | Toolshed: delay_registration volume unbend
|
|---|
| 447 | Toolshed: delay_registration volume unroll
|
|---|
| 448 | Toolshed: delay_registration volume zone
|
|---|
| 449 | Toolshed: delay_registration volume unzone
|
|---|
| 450 | Toolshed: delay_registration vop
|
|---|
| 451 | Toolshed: register bundle ChimeraX-DiffPlot 1.0
|
|---|
| 452 | Toolshed: delay_registration diffplot
|
|---|
| 453 | Toolshed: register bundle ChimeraX-Toolbar 1.1.2
|
|---|
| 454 | Toolshed: register bundle ChimeraX-Hbonds 2.4
|
|---|
| 455 | Toolshed: delay_registration hbonds
|
|---|
| 456 | Toolshed: delay_registration ~hbonds
|
|---|
| 457 | Toolshed: register bundle ChimeraX-Topography 1.0
|
|---|
| 458 | Toolshed: delay_registration topography
|
|---|
| 459 | Toolshed: register bundle ChimeraX-SaveCommand 1.5.1
|
|---|
| 460 | Toolshed: delay_registration save
|
|---|
| 461 | Toolshed: delay_registration usage save
|
|---|
| 462 | Toolshed: register bundle ChimeraX-VTK 1.0
|
|---|
| 463 | Toolshed: register bundle ChimeraX-IHM 1.1
|
|---|
| 464 | Toolshed: register bundle ChimeraX-MatchMaker 2.1.3
|
|---|
| 465 | Toolshed: delay_registration matchmaker
|
|---|
| 466 | Toolshed: delay_registration mmaker
|
|---|
| 467 | Toolshed: register bundle ChimeraX-PDBBio 1.0.1
|
|---|
| 468 | Toolshed: register bundle ChimeraX-Nifti 1.1
|
|---|
| 469 | Toolshed: register bundle ChimeraX-Meeting 1.0.1
|
|---|
| 470 | Toolshed: delay_registration meeting start
|
|---|
| 471 | Toolshed: delay_registration meeting join
|
|---|
| 472 | Toolshed: delay_registration meeting
|
|---|
| 473 | Toolshed: delay_registration meeting close
|
|---|
| 474 | Toolshed: delay_registration meeting info
|
|---|
| 475 | Toolshed: delay_registration meeting settings
|
|---|
| 476 | Toolshed: delay_registration meeting server
|
|---|
| 477 | Toolshed: delay_registration meeting unname
|
|---|
| 478 | Toolshed: delay_registration meeting send
|
|---|
| 479 | Toolshed: register bundle ChimeraX-Mole 1.0
|
|---|
| 480 | Toolshed: register bundle ChimeraX-Shell 1.0.1
|
|---|
| 481 | Toolshed: register bundle ChimeraX-Contacts 1.0.1
|
|---|
| 482 | Toolshed: delay_registration interfaces
|
|---|
| 483 | Toolshed: register bundle ChimeraX-SwapRes 2.5
|
|---|
| 484 | Toolshed: delay_registration swapaa
|
|---|
| 485 | Toolshed: delay_registration swapna
|
|---|
| 486 | Toolshed: register bundle ChimeraX-uniprot 2.3
|
|---|
| 487 | Toolshed: register bundle ChimeraX-BondRot 2.0.4
|
|---|
| 488 | Toolshed: delay_registration torsion
|
|---|
| 489 | Toolshed: register bundle ChimeraX-AltlocExplorer 1.1.1
|
|---|
| 490 | Toolshed: register bundle ChimeraX-AxesPlanes 2.4
|
|---|
| 491 | Toolshed: delay_registration define plane
|
|---|
| 492 | Toolshed: delay_registration define axis
|
|---|
| 493 | Toolshed: register bundle ChimeraX-DistMonitor 1.4.2
|
|---|
| 494 | Toolshed: delay_registration distance
|
|---|
| 495 | Toolshed: delay_registration ~distance
|
|---|
| 496 | Toolshed: register bundle ChimeraX-Morph 1.0.2
|
|---|
| 497 | Toolshed: delay_registration morph
|
|---|
| 498 | Toolshed: Initiated toolshed check: 2024-05-07T11:12:55.327357
|
|---|
| 499 | Toolshed: finished loading bundles
|
|---|
| 500 | NOTE: Initializing bundles
|
|---|
| 501 | Toolshed: initialize_bundles False
|
|---|
| 502 | Toolshed: initialize manager rotamers for bundle 'ChimeraX-RotamerLibMgr'
|
|---|
| 503 | Toolshed: initialize manager presets for bundle 'ChimeraX-PresetMgr'
|
|---|
| 504 | Toolshed: initialize manager url_schemes for bundle 'ChimeraX-SchemeMgr'
|
|---|
| 505 | Toolshed: initialize manager data formats for bundle 'ChimeraX-DataFormats'
|
|---|
| 506 | Toolshed: skip non-autostart manager sequence features for bundle 'ChimeraX-Atomic'
|
|---|
| 507 | Toolshed: initialize manager alignments for bundle 'ChimeraX-Alignments'
|
|---|
| 508 | Toolshed: find_bundle ChimeraX-DataFormats True None
|
|---|
| 509 | C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py:669: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
|
|---|
| 510 | from pkg_resources import parse_version
|
|---|
| 511 | C:\Program Files\ChimeraX\bin\Lib\site-packages\pkg_resources\__init__.py:2832: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
|
|---|
| 512 | Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
|
|---|
| 513 | declare_namespace(pkg)
|
|---|
| 514 | Toolshed: initialize manager open command for bundle 'ChimeraX-OpenCommand'
|
|---|
| 515 | Database-fetch provider 'redo' in bundle Map specified unknown data format 'MTZ'
|
|---|
| 516 | Toolshed: initialize manager items inspection for bundle 'ChimeraX-ItemsInspection'
|
|---|
| 517 | Toolshed: skip non-autostart manager render by attribute for bundle 'ChimeraX-RenderByAttr'
|
|---|
| 518 | Toolshed: skip non-autostart manager start structure for bundle 'ChimeraX-BuildStructure'
|
|---|
| 519 | Toolshed: skip non-autostart manager start structure fragments for bundle 'ChimeraX-BuildStructure'
|
|---|
| 520 | Toolshed: initialize manager toolbar for bundle 'ChimeraX-Toolbar'
|
|---|
| 521 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 522 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 523 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 524 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 525 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 526 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 527 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 528 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 529 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 530 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 531 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 532 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 533 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 534 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 535 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 536 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 537 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 538 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 539 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 540 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 541 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 542 | Toolshed: find_bundle ChimeraX-DataFormats True None
|
|---|
| 543 | Toolshed: initialize manager save command for bundle 'ChimeraX-SaveCommand'
|
|---|
| 544 | Toolshed: custom initialization for bundle 'ChimeraX-ToolshedUtils'
|
|---|
| 545 | Toolshed: custom initialization for bundle 'ChimeraX-RestServer'
|
|---|
| 546 | Toolshed: custom initialization for bundle 'ChimeraX-Vive'
|
|---|
| 547 | Toolshed: custom initialization for bundle 'ChimeraX-MouseModes'
|
|---|
| 548 | Toolshed: custom initialization for bundle 'ChimeraX-Registration'
|
|---|
| 549 | Toolshed: custom initialization for bundle 'ChimeraX-BugReporter'
|
|---|
| 550 | Toolshed: custom initialization for bundle 'ChimeraX-ViewDockX'
|
|---|
| 551 | Toolshed: custom initialization for bundle 'ChimeraX-Markers'
|
|---|
| 552 | Toolshed: custom initialization for bundle 'ChimeraX-VolumeMenu'
|
|---|
| 553 | Toolshed: custom initialization for bundle 'ChimeraX-Map'
|
|---|
| 554 | Toolshed: custom initialization for bundle 'ChimeraX-TapeMeasure'
|
|---|
| 555 | Toolshed: custom initialization for bundle 'ChimeraX-Dicom'
|
|---|
| 556 | Toolshed: custom initialization for bundle 'ChimeraX-Atomic'
|
|---|
| 557 | Toolshed: custom initialization for bundle 'ChimeraX-FunctionKey'
|
|---|
| 558 | Toolshed: custom initialization for bundle 'ChimeraX-StructMeasure'
|
|---|
| 559 | Toolshed: custom initialization for bundle 'ChimeraX-Help'
|
|---|
| 560 | Toolshed: custom initialization for bundle 'ChimeraX-MapSeries'
|
|---|
| 561 | Toolshed: custom initialization for bundle 'ChimeraX-Tug'
|
|---|
| 562 | Toolshed: custom initialization for bundle 'ChimeraX-StdCommands'
|
|---|
| 563 | Toolshed: custom initialization for bundle 'ChimeraX-SwapAA'
|
|---|
| 564 | Toolshed: custom initialization for bundle 'ChimeraX-Zone'
|
|---|
| 565 | Toolshed: custom initialization for bundle 'ChimeraX-NMRSTAR'
|
|---|
| 566 | Toolshed: custom initialization for bundle 'ChimeraX-Label'
|
|---|
| 567 | Toolshed: custom initialization for bundle 'ChimeraX-CommandLine'
|
|---|
| 568 | Toolshed: custom initialization for bundle 'ChimeraX-Surface'
|
|---|
| 569 | Toolshed: custom initialization for bundle 'ChimeraX-BuildStructure'
|
|---|
| 570 | Toolshed: custom initialization for bundle 'ChimeraX-PickBlobs'
|
|---|
| 571 | Toolshed: custom initialization for bundle 'ChimeraX-Log'
|
|---|
| 572 | Toolshed: custom initialization for bundle 'ChimeraX-ChemGroup'
|
|---|
| 573 | Toolshed: custom initialization for bundle 'ChimeraX-BasicActions'
|
|---|
| 574 | Toolshed: custom initialization for bundle 'ChimeraX-Segmentations'
|
|---|
| 575 | Toolshed: custom initialization for bundle 'ChimeraX-MapEraser'
|
|---|
| 576 | Toolshed: custom initialization for bundle 'ChimeraX-SwapRes'
|
|---|
| 577 | Toolshed: custom initialization for bundle 'ChimeraX-BondRot'
|
|---|
| 578 | Toolshed: custom initialization for bundle 'ChimeraX-DistMonitor'
|
|---|
| 579 | NOTE: Starting main interface
|
|---|
| 580 | Your computer has Intel graphics driver 7925 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this.
|
|---|
| 581 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 582 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 583 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 584 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 585 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 586 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 587 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 588 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 589 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 590 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 591 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 592 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 593 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 594 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 595 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 596 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 597 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 598 | Toolshed: find_bundle ChimeraX-SelInspector True None
|
|---|
| 599 | Toolshed: AvailableBundleCache.load: toolshed_url https://cxtoolshed.rbvi.ucsf.edu
|
|---|
| 600 | Toolshed: AvailableBundleCache.load: url https://cxtoolshed.rbvi.ucsf.edu/bundle/?uuid=d0b35e9f-9c10-5eb4-b095-4abd4d69bfa0&format_version=2
|
|---|
| 601 | Toolshed: find_bundle ChimeraX-Core True None
|
|---|
| 602 | Windows fatal exception: access violation
|
|---|
| 603 |
|
|---|
| 604 | Thread 0x000041f4 (most recent call first):
|
|---|
| 605 | File "C:\Program Files\ChimeraX\bin\Lib\socket.py", line 836 in create_connection
|
|---|
| 606 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 945 in connect
|
|---|
| 607 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1451 in connect
|
|---|
| 608 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 979 in send
|
|---|
| 609 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1041 in _send_output
|
|---|
| 610 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1281 in endheaders
|
|---|
| 611 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1332 in _send_request
|
|---|
| 612 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1286 in request
|
|---|
| 613 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 1348 in do_open
|
|---|
| 614 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 1391 in https_open
|
|---|
| 615 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 496 in _call_chain
|
|---|
| 616 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 536 in _open
|
|---|
| 617 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 519 in open
|
|---|
| 618 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 216 in urlopen
|
|---|
| 619 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\toolshed\available.py", line 62 in load
|
|---|
| 620 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 467 in reload_available
|
|---|
| 621 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 975 in run
|
|---|
| 622 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 1038 in _bootstrap_inner
|
|---|
| 623 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 995 in _bootstrap
|
|---|
| 624 |
|
|---|
| 625 | Current thread 0x000034c4 (most recent call first):
|
|---|
| 626 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\ui\gui.py", line 285 in event_loop
|
|---|
| 627 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\__main__.py", line 1006 in init
|
|---|
| 628 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\__main__.py", line 1169 in <module>
|
|---|
| 629 | File "<frozen runpy>", line 88 in _run_code
|
|---|
| 630 | File "<frozen runpy>", line 198 in _run_module_as_main
|
|---|
| 631 |
|
|---|
| 632 | C:\Users\Tennstedt>"C:\Program Files\ChimeraX\bin\ChimeraX-console.exe" --debug > C:\Users\Tennstedt\Desktop\Debug_CimeraX_V01.txt
|
|---|
| 633 | Toolshed: __init__ False False None
|
|---|
| 634 | Toolshed: cache dir: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\Cache\1.8\toolshed
|
|---|
| 635 | Toolshed: site dir: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\1.8\Python311\site-packages
|
|---|
| 636 | Toolshed: loading bundles
|
|---|
| 637 | Toolshed: reload False False
|
|---|
| 638 | Toolshed: _bundle_cache False
|
|---|
| 639 | Toolshed: InstalledBundleCache.load: rebuild_cache False
|
|---|
| 640 | Toolshed: InstalledBundleCache._read_cache: C:\Users\Tennstedt\AppData\Local\UCSF\ChimeraX\Cache\1.8\toolshed\bundle_info.cache
|
|---|
| 641 | Toolshed: _is_cache_newer
|
|---|
| 642 | Toolshed: InstalledBundleCache._read_cache: 163 bundles
|
|---|
| 643 | Toolshed: InstalledBundleCache.load: using cached data
|
|---|
| 644 | Toolshed: register bundle ChimeraX-Arrays 1.1
|
|---|
| 645 | Toolshed: register bundle ChimeraX-ToolshedUtils 1.2.4
|
|---|
| 646 | Toolshed: register bundle ChimeraX-Core 1.8.dev202405040553
|
|---|
| 647 | Toolshed: register bundle ChimeraX-RemoteControl 1.0
|
|---|
| 648 | Toolshed: delay_registration remotecontrol xmlrpc
|
|---|
| 649 | Toolshed: register bundle ChimeraX-SmoothLines 1.0
|
|---|
| 650 | Toolshed: delay_registration smoothlines
|
|---|
| 651 | Toolshed: register bundle ChimeraX-ListInfo 1.2.2
|
|---|
| 652 | Toolshed: delay_registration info
|
|---|
| 653 | Toolshed: register bundle ChimeraX-Segment 1.0.1
|
|---|
| 654 | Toolshed: delay_registration segmentation
|
|---|
| 655 | Toolshed: register bundle ChimeraX-Movie 1.0
|
|---|
| 656 | Toolshed: delay_registration movie
|
|---|
| 657 | Toolshed: register bundle ChimeraX-IO 1.0.1
|
|---|
| 658 | Toolshed: register bundle ChimeraX-WebServices 1.1.3
|
|---|
| 659 | Toolshed: register bundle ChimeraX-Test 1.0
|
|---|
| 660 | Toolshed: delay_registration debug test
|
|---|
| 661 | Toolshed: delay_registration debug exectest
|
|---|
| 662 | Toolshed: delay_registration debug expectfail
|
|---|
| 663 | Toolshed: register bundle ChimeraX-AmberInfo 1.0
|
|---|
| 664 | Toolshed: register bundle ChimeraX-MCopy 1.0
|
|---|
| 665 | Toolshed: delay_registration mcopy
|
|---|
| 666 | Toolshed: register bundle ChimeraX-ToQuest 1.0
|
|---|
| 667 | Toolshed: register bundle ChimeraX-RotamerLibMgr 4.0
|
|---|
| 668 | Toolshed: register bundle ChimeraX-PresetMgr 1.1.1
|
|---|
| 669 | Toolshed: delay_registration preset
|
|---|
| 670 | Toolshed: register bundle ChimeraX-AtomicLibrary 14.0.3
|
|---|
| 671 | Toolshed: register bundle ChimeraX-SchemeMgr 1.0
|
|---|
| 672 | Toolshed: register bundle ChimeraX-Geometry 1.3
|
|---|
| 673 | Toolshed: register bundle ChimeraX-RestServer 1.2
|
|---|
| 674 | Toolshed: delay_registration remotecontrol rest
|
|---|
| 675 | Toolshed: register bundle ChimeraX-Struts 1.0.1
|
|---|
| 676 | Toolshed: delay_registration struts
|
|---|
| 677 | Toolshed: delay_registration ~struts
|
|---|
| 678 | Toolshed: register bundle ChimeraX-DataFormats 1.2.3
|
|---|
| 679 | Toolshed: register bundle ChimeraX-SpaceNavigator 1.0
|
|---|
| 680 | Toolshed: delay_registration device snav
|
|---|
| 681 | Toolshed: register bundle ChimeraX-Dssp 2.0
|
|---|
| 682 | Toolshed: register bundle ChimeraX-RotamerLibsDynameomics 2.0
|
|---|
| 683 | Toolshed: register bundle ChimeraX-AtomSearch 2.0.1
|
|---|
| 684 | Toolshed: register bundle ChimeraX-Crystal 1.0
|
|---|
| 685 | Toolshed: register bundle ChimeraX-ConnectStructure 2.0.1
|
|---|
| 686 | Toolshed: register bundle ChimeraX-RotamerLibsRichardson 2.0
|
|---|
| 687 | Toolshed: register bundle ChimeraX-Shape 1.0.1
|
|---|
| 688 | Toolshed: delay_registration shape boxPath
|
|---|
| 689 | Toolshed: delay_registration shape cone
|
|---|
| 690 | Toolshed: delay_registration shape cylinder
|
|---|
| 691 | Toolshed: delay_registration shape ellipsoid
|
|---|
| 692 | Toolshed: delay_registration shape icosahedron
|
|---|
| 693 | Toolshed: delay_registration shape rectangle
|
|---|
| 694 | Toolshed: delay_registration shape ribbon
|
|---|
| 695 | Toolshed: delay_registration shape sphere
|
|---|
| 696 | Toolshed: delay_registration shape triangle
|
|---|
| 697 | Toolshed: delay_registration shape tube
|
|---|
| 698 | Toolshed: register bundle ChimeraX-IMOD 1.0
|
|---|
| 699 | Toolshed: register bundle ChimeraX-Graphics 1.1.1
|
|---|
| 700 | Toolshed: register bundle ChimeraX-RotamerLibsDunbrack 2.0
|
|---|
| 701 | Toolshed: register bundle ChimeraX-LookingGlass 1.1
|
|---|
| 702 | Toolshed: delay_registration lookingglass
|
|---|
| 703 | Toolshed: delay_registration device lookingglass
|
|---|
| 704 | Toolshed: register bundle ChimeraX-vrml 1.0
|
|---|
| 705 | Toolshed: register bundle ChimeraX-WebCam 1.0.2
|
|---|
| 706 | Toolshed: delay_registration webcam
|
|---|
| 707 | Toolshed: delay_registration device webcam
|
|---|
| 708 | Toolshed: register bundle ChimeraX-Vive 1.1
|
|---|
| 709 | Toolshed: delay_registration vr
|
|---|
| 710 | Toolshed: delay_registration xr
|
|---|
| 711 | Toolshed: delay_registration device vr
|
|---|
| 712 | Toolshed: register bundle ChimeraX-MouseModes 1.2
|
|---|
| 713 | Toolshed: delay_registration ui mousemode
|
|---|
| 714 | Toolshed: delay_registration mousemode
|
|---|
| 715 | Toolshed: register bundle ChimeraX-MapData 2.0
|
|---|
| 716 | Toolshed: register bundle ChimeraX-EMDB-SFF 1.0
|
|---|
| 717 | Toolshed: register bundle ChimeraX-IUPAC 1.0
|
|---|
| 718 | Toolshed: register bundle ChimeraX-ImageFormats 1.2
|
|---|
| 719 | Toolshed: register bundle ChimeraX-Registration 1.1.2
|
|---|
| 720 | Toolshed: delay_registration registration status
|
|---|
| 721 | Toolshed: delay_registration registration file
|
|---|
| 722 | Toolshed: register bundle ChimeraX-WavefrontOBJ 1.0
|
|---|
| 723 | Toolshed: register bundle ChimeraX-SDF 2.0.2
|
|---|
| 724 | Toolshed: register bundle ChimeraX-RNALayout 1.0
|
|---|
| 725 | Toolshed: delay_registration rna path
|
|---|
| 726 | Toolshed: delay_registration rna model
|
|---|
| 727 | Toolshed: register bundle ChimeraX-mmCIF 2.14.1
|
|---|
| 728 | Toolshed: register bundle ChimeraX-BugReporter 1.0.1
|
|---|
| 729 | Toolshed: register bundle ChimeraX-CageBuilder 1.0.1
|
|---|
| 730 | Toolshed: delay_registration cage
|
|---|
| 731 | Toolshed: register bundle ChimeraX-Modeller 1.5.15
|
|---|
| 732 | Toolshed: delay_registration modeller comparative
|
|---|
| 733 | Toolshed: delay_registration modeller loops
|
|---|
| 734 | Toolshed: delay_registration modeller refine
|
|---|
| 735 | Toolshed: delay_registration modeller scores
|
|---|
| 736 | Toolshed: register bundle ChimeraX-CrystalContacts 1.0.1
|
|---|
| 737 | Toolshed: delay_registration crystalcontacts
|
|---|
| 738 | Toolshed: register bundle ChimeraX-ViewDockX 1.4.1
|
|---|
| 739 | Toolshed: delay_registration viewdockx
|
|---|
| 740 | Toolshed: delay_registration viewdockx down
|
|---|
| 741 | Toolshed: delay_registration viewdockx up
|
|---|
| 742 | Toolshed: register bundle ChimeraX-AlignmentMatrices 2.1
|
|---|
| 743 | Toolshed: register bundle ChimeraX-Markers 1.0.1
|
|---|
| 744 | Toolshed: delay_registration marker
|
|---|
| 745 | Toolshed: register bundle ChimeraX-VolumeMenu 1.0.1
|
|---|
| 746 | Toolshed: register bundle ChimeraX-Shortcuts 1.1.1
|
|---|
| 747 | Toolshed: delay_registration ks
|
|---|
| 748 | Toolshed: delay_registration snapshot
|
|---|
| 749 | Toolshed: register bundle ChimeraX-Map 1.2
|
|---|
| 750 | Toolshed: delay_registration volume
|
|---|
| 751 | Toolshed: delay_registration molmap
|
|---|
| 752 | Toolshed: delay_registration measure mapstats
|
|---|
| 753 | Toolshed: delay_registration measure mapvalues
|
|---|
| 754 | Toolshed: register bundle ChimeraX-Neuron 1.0
|
|---|
| 755 | Toolshed: register bundle ChimeraX-HKCage 1.3
|
|---|
| 756 | Toolshed: delay_registration hkcage
|
|---|
| 757 | Toolshed: register bundle ChimeraX-VIPERdb 1.0
|
|---|
| 758 | Toolshed: register bundle ChimeraX-AlignmentAlgorithms 2.0.2
|
|---|
| 759 | Toolshed: register bundle ChimeraX-Crosslinks 1.0
|
|---|
| 760 | Toolshed: delay_registration crosslinks
|
|---|
| 761 | Toolshed: register bundle ChimeraX-SeqView 2.11.2
|
|---|
| 762 | Toolshed: register bundle ChimeraX-ModelPanel 1.5
|
|---|
| 763 | Toolshed: register bundle ChimeraX-PDBMatrices 1.0
|
|---|
| 764 | Toolshed: register bundle ChimeraX-TapeMeasure 1.0
|
|---|
| 765 | Toolshed: register bundle ChimeraX-Maestro 1.9.1
|
|---|
| 766 | Toolshed: register bundle ChimeraX-ChangeChains 1.1
|
|---|
| 767 | Toolshed: delay_registration changechains
|
|---|
| 768 | Toolshed: register bundle ChimeraX-Dicom 1.2
|
|---|
| 769 | Toolshed: register bundle ChimeraX-Atomic 1.57
|
|---|
| 770 | Toolshed: delay_registration log chains
|
|---|
| 771 | Toolshed: delay_registration combine
|
|---|
| 772 | Toolshed: delay_registration pbond
|
|---|
| 773 | Toolshed: delay_registration ~pbond
|
|---|
| 774 | Toolshed: register bundle ChimeraX-Alignments 2.12.6
|
|---|
| 775 | Toolshed: delay_registration sequence
|
|---|
| 776 | Toolshed: register bundle ChimeraX-FunctionKey 1.0.1
|
|---|
| 777 | Toolshed: delay_registration ui functionkey
|
|---|
| 778 | Toolshed: delay_registration functionkey
|
|---|
| 779 | Toolshed: register bundle ChimeraX-UnitCell 1.0.1
|
|---|
| 780 | Toolshed: delay_registration unitcell
|
|---|
| 781 | Toolshed: register bundle ChimeraX-Centroids 1.4
|
|---|
| 782 | Toolshed: delay_registration define centroid
|
|---|
| 783 | Toolshed: register bundle ChimeraX-UI 1.39
|
|---|
| 784 | Toolshed: delay_registration ui
|
|---|
| 785 | Toolshed: delay_registration tool
|
|---|
| 786 | Toolshed: register bundle ChimeraX-StructMeasure 1.2.1
|
|---|
| 787 | Toolshed: register bundle ChimeraX-ShowSequences 1.0.3
|
|---|
| 788 | Toolshed: register bundle ChimeraX-RenumberResidues 1.1
|
|---|
| 789 | Toolshed: delay_registration renumber
|
|---|
| 790 | Toolshed: register bundle ChimeraX-Help 1.2.2
|
|---|
| 791 | Toolshed: delay_registration help
|
|---|
| 792 | Toolshed: register bundle ChimeraX-FileHistory 1.0.1
|
|---|
| 793 | Toolshed: register bundle ChimeraX-OpenCommand 1.13.4
|
|---|
| 794 | Toolshed: delay_registration open
|
|---|
| 795 | Toolshed: delay_registration usage open
|
|---|
| 796 | Toolshed: register bundle ChimeraX-MapSeries 2.1.1
|
|---|
| 797 | Toolshed: delay_registration vseries
|
|---|
| 798 | Toolshed: delay_registration measure motion
|
|---|
| 799 | Toolshed: register bundle ChimeraX-Tug 1.0.1
|
|---|
| 800 | Toolshed: delay_registration tug
|
|---|
| 801 | Toolshed: register bundle ChimeraX-CoreFormats 1.2
|
|---|
| 802 | Toolshed: register bundle ChimeraX-StdCommands 1.16.4
|
|---|
| 803 | Toolshed: delay_registration alias
|
|---|
| 804 | Toolshed: delay_registration alias list
|
|---|
| 805 | Toolshed: delay_registration alias delete
|
|---|
| 806 | Toolshed: delay_registration ~alias
|
|---|
| 807 | Toolshed: delay_registration align
|
|---|
| 808 | Toolshed: delay_registration altlocs
|
|---|
| 809 | Toolshed: delay_registration angle
|
|---|
| 810 | Toolshed: delay_registration camera
|
|---|
| 811 | Toolshed: delay_registration cartoon
|
|---|
| 812 | Toolshed: delay_registration ~cartoon
|
|---|
| 813 | Toolshed: delay_registration cd
|
|---|
| 814 | Toolshed: delay_registration clip
|
|---|
| 815 | Toolshed: delay_registration ~clip
|
|---|
| 816 | Toolshed: delay_registration close
|
|---|
| 817 | Toolshed: delay_registration cofr
|
|---|
| 818 | Toolshed: delay_registration ~cofr
|
|---|
| 819 | Toolshed: delay_registration color
|
|---|
| 820 | Toolshed: delay_registration colour
|
|---|
| 821 | Toolshed: delay_registration color delete
|
|---|
| 822 | Toolshed: delay_registration color list
|
|---|
| 823 | Toolshed: delay_registration color name
|
|---|
| 824 | Toolshed: delay_registration color show
|
|---|
| 825 | Toolshed: delay_registration colordef
|
|---|
| 826 | Toolshed: delay_registration ~colordef
|
|---|
| 827 | Toolshed: delay_registration colourdef
|
|---|
| 828 | Toolshed: delay_registration ~colourdef
|
|---|
| 829 | Toolshed: delay_registration coordset
|
|---|
| 830 | Toolshed: delay_registration crossfade
|
|---|
| 831 | Toolshed: delay_registration defattr
|
|---|
| 832 | Toolshed: delay_registration delete
|
|---|
| 833 | Toolshed: delay_registration dssp
|
|---|
| 834 | Toolshed: delay_registration exit
|
|---|
| 835 | Toolshed: delay_registration quit
|
|---|
| 836 | Toolshed: delay_registration fly
|
|---|
| 837 | Toolshed: delay_registration getcrd
|
|---|
| 838 | Toolshed: delay_registration graphics
|
|---|
| 839 | Toolshed: delay_registration hide
|
|---|
| 840 | Toolshed: delay_registration ~show
|
|---|
| 841 | Toolshed: delay_registration ~display
|
|---|
| 842 | Toolshed: delay_registration lighting
|
|---|
| 843 | Toolshed: delay_registration lighting model
|
|---|
| 844 | Toolshed: delay_registration material
|
|---|
| 845 | Toolshed: delay_registration measure buriedarea
|
|---|
| 846 | Toolshed: delay_registration measure center
|
|---|
| 847 | Toolshed: delay_registration measure convexity
|
|---|
| 848 | Toolshed: delay_registration measure correlation
|
|---|
| 849 | Toolshed: delay_registration measure inertia
|
|---|
| 850 | Toolshed: delay_registration measure length
|
|---|
| 851 | Toolshed: delay_registration measure rotation
|
|---|
| 852 | Toolshed: delay_registration measure symmetry
|
|---|
| 853 | Toolshed: delay_registration move
|
|---|
| 854 | Toolshed: delay_registration move cofr
|
|---|
| 855 | Toolshed: delay_registration palette
|
|---|
| 856 | Toolshed: delay_registration perframe
|
|---|
| 857 | Toolshed: delay_registration ~perframe
|
|---|
| 858 | Toolshed: delay_registration pwd
|
|---|
| 859 | Toolshed: delay_registration rainbow
|
|---|
| 860 | Toolshed: delay_registration rename
|
|---|
| 861 | Toolshed: delay_registration ribbon
|
|---|
| 862 | Toolshed: delay_registration ~ribbon
|
|---|
| 863 | Toolshed: delay_registration rmsd
|
|---|
| 864 | Toolshed: delay_registration rock
|
|---|
| 865 | Toolshed: delay_registration roll
|
|---|
| 866 | Toolshed: delay_registration runscript
|
|---|
| 867 | Toolshed: delay_registration select
|
|---|
| 868 | Toolshed: delay_registration ~select
|
|---|
| 869 | Toolshed: delay_registration set
|
|---|
| 870 | Toolshed: delay_registration ~set
|
|---|
| 871 | Toolshed: delay_registration setattr
|
|---|
| 872 | Toolshed: delay_registration show
|
|---|
| 873 | Toolshed: delay_registration display
|
|---|
| 874 | Toolshed: delay_registration size
|
|---|
| 875 | Toolshed: delay_registration split
|
|---|
| 876 | Toolshed: delay_registration stop
|
|---|
| 877 | Toolshed: delay_registration style
|
|---|
| 878 | Toolshed: delay_registration sym
|
|---|
| 879 | Toolshed: delay_registration tile
|
|---|
| 880 | Toolshed: delay_registration ~tile
|
|---|
| 881 | Toolshed: delay_registration time
|
|---|
| 882 | Toolshed: delay_registration transparency
|
|---|
| 883 | Toolshed: delay_registration turn
|
|---|
| 884 | Toolshed: delay_registration undo
|
|---|
| 885 | Toolshed: delay_registration redo
|
|---|
| 886 | Toolshed: delay_registration usage
|
|---|
| 887 | Toolshed: delay_registration version
|
|---|
| 888 | Toolshed: delay_registration view
|
|---|
| 889 | Toolshed: delay_registration wait
|
|---|
| 890 | Toolshed: delay_registration windowsize
|
|---|
| 891 | Toolshed: delay_registration wobble
|
|---|
| 892 | Toolshed: delay_registration worm
|
|---|
| 893 | Toolshed: delay_registration ~worm
|
|---|
| 894 | Toolshed: delay_registration select zone
|
|---|
| 895 | Toolshed: delay_registration zoom
|
|---|
| 896 | Toolshed: register bundle ChimeraX-SideView 1.0.1
|
|---|
| 897 | Toolshed: register bundle ChimeraX-PubChem 2.2
|
|---|
| 898 | Toolshed: register bundle ChimeraX-SwapAA 2.0.1
|
|---|
| 899 | Toolshed: delay_registration swapaa mousemode
|
|---|
| 900 | Toolshed: register bundle ChimeraX-Smiles 2.1.2
|
|---|
| 901 | Toolshed: register bundle ChimeraX-TaskManager 1.0
|
|---|
| 902 | Toolshed: delay_registration taskman
|
|---|
| 903 | Toolshed: register bundle ChimeraX-ItemsInspection 1.0.1
|
|---|
| 904 | Toolshed: register bundle ChimeraX-Zone 1.0.1
|
|---|
| 905 | Toolshed: delay_registration zone
|
|---|
| 906 | Toolshed: register bundle ChimeraX-DockPrep 1.1.3
|
|---|
| 907 | Toolshed: delay_registration dockprep
|
|---|
| 908 | Toolshed: register bundle ChimeraX-Segger 1.0
|
|---|
| 909 | Toolshed: delay_registration segger
|
|---|
| 910 | Toolshed: register bundle ChimeraX-MedicalToolbar 1.0.2
|
|---|
| 911 | Toolshed: register bundle ChimeraX-NMRSTAR 1.0.2
|
|---|
| 912 | Toolshed: register bundle ChimeraX-ColorKey 1.5.5
|
|---|
| 913 | Toolshed: delay_registration key
|
|---|
| 914 | Toolshed: delay_registration ~key
|
|---|
| 915 | Toolshed: register bundle ChimeraX-CellPack 1.0
|
|---|
| 916 | Toolshed: register bundle ChimeraX-Label 1.1.9
|
|---|
| 917 | Toolshed: delay_registration 2dlabels
|
|---|
| 918 | Toolshed: delay_registration scalebar
|
|---|
| 919 | Toolshed: delay_registration label
|
|---|
| 920 | Toolshed: delay_registration ~label
|
|---|
| 921 | Toolshed: register bundle ChimeraX-Mask 1.0.2
|
|---|
| 922 | Toolshed: delay_registration volume mask
|
|---|
| 923 | Toolshed: delay_registration volume onesmask
|
|---|
| 924 | Toolshed: register bundle ChimeraX-PDBLibrary 1.0.4
|
|---|
| 925 | Toolshed: register bundle ChimeraX-CommandLine 1.2.5
|
|---|
| 926 | Toolshed: register bundle ChimeraX-Clashes 2.2.4
|
|---|
| 927 | Toolshed: delay_registration clashes
|
|---|
| 928 | Toolshed: delay_registration contacts
|
|---|
| 929 | Toolshed: delay_registration ~clashes
|
|---|
| 930 | Toolshed: delay_registration ~contacts
|
|---|
| 931 | Toolshed: register bundle ChimeraX-AddH 2.2.6
|
|---|
| 932 | Toolshed: delay_registration addh
|
|---|
| 933 | Toolshed: register bundle ChimeraX-AlignmentHdrs 3.5
|
|---|
| 934 | Toolshed: register bundle ChimeraX-STL 1.0.1
|
|---|
| 935 | Toolshed: register bundle ChimeraX-Surface 1.0.1
|
|---|
| 936 | Toolshed: delay_registration color electrostatic
|
|---|
| 937 | Toolshed: delay_registration color sample
|
|---|
| 938 | Toolshed: delay_registration color gradient
|
|---|
| 939 | Toolshed: delay_registration color radial
|
|---|
| 940 | Toolshed: delay_registration color cylindrical
|
|---|
| 941 | Toolshed: delay_registration color height
|
|---|
| 942 | Toolshed: delay_registration color image
|
|---|
| 943 | Toolshed: delay_registration surface
|
|---|
| 944 | Toolshed: delay_registration ~surface
|
|---|
| 945 | Toolshed: delay_registration surface showPatches
|
|---|
| 946 | Toolshed: delay_registration surface hidePatches
|
|---|
| 947 | Toolshed: delay_registration surface close
|
|---|
| 948 | Toolshed: delay_registration surface style
|
|---|
| 949 | Toolshed: delay_registration surface squaremesh
|
|---|
| 950 | Toolshed: delay_registration surface showall
|
|---|
| 951 | Toolshed: delay_registration surface cap
|
|---|
| 952 | Toolshed: delay_registration surface dust
|
|---|
| 953 | Toolshed: delay_registration surface undust
|
|---|
| 954 | Toolshed: delay_registration surface invertShown
|
|---|
| 955 | Toolshed: delay_registration surface transform
|
|---|
| 956 | Toolshed: delay_registration surface zone
|
|---|
| 957 | Toolshed: delay_registration surface unzone
|
|---|
| 958 | Toolshed: delay_registration surface check
|
|---|
| 959 | Toolshed: delay_registration surface splitbycolor
|
|---|
| 960 | Toolshed: delay_registration sop
|
|---|
| 961 | Toolshed: delay_registration volume splitbyzone
|
|---|
| 962 | Toolshed: delay_registration measure sasa
|
|---|
| 963 | Toolshed: delay_registration measure volume
|
|---|
| 964 | Toolshed: delay_registration measure area
|
|---|
| 965 | Toolshed: delay_registration measure contactArea
|
|---|
| 966 | Toolshed: register bundle ChimeraX-ColorGlobe 1.0
|
|---|
| 967 | Toolshed: register bundle ChimeraX-AddCharge 1.5.17
|
|---|
| 968 | Toolshed: delay_registration addcharge
|
|---|
| 969 | Toolshed: delay_registration addcharge nonstd
|
|---|
| 970 | Toolshed: register bundle ChimeraX-ReadPbonds 1.0.1
|
|---|
| 971 | Toolshed: register bundle ChimeraX-BILD 1.0
|
|---|
| 972 | Toolshed: register bundle ChimeraX-Bumps 1.0
|
|---|
| 973 | Toolshed: delay_registration bumps
|
|---|
| 974 | Toolshed: delay_registration cbumps
|
|---|
| 975 | Toolshed: register bundle ChimeraX-NRRD 1.1
|
|---|
| 976 | Toolshed: register bundle ChimeraX-RenderByAttr 1.4.1
|
|---|
| 977 | Toolshed: register bundle ChimeraX-BuildStructure 2.12.1
|
|---|
| 978 | Toolshed: delay_registration build
|
|---|
| 979 | Toolshed: delay_registration bond
|
|---|
| 980 | Toolshed: delay_registration ~bond
|
|---|
| 981 | Toolshed: delay_registration bond length
|
|---|
| 982 | Toolshed: register bundle ChimeraX-PickBlobs 1.0.1
|
|---|
| 983 | Toolshed: delay_registration measure blob
|
|---|
| 984 | Toolshed: register bundle ChimeraX-MDcrds 2.7
|
|---|
| 985 | Toolshed: register bundle ChimeraX-Mol2 2.0.3
|
|---|
| 986 | Toolshed: register bundle ChimeraX-ColorActions 1.0.4
|
|---|
| 987 | Toolshed: register bundle ChimeraX-Nucleotides 2.0.3
|
|---|
| 988 | Toolshed: delay_registration nucleotides
|
|---|
| 989 | Toolshed: delay_registration ~nucleotides
|
|---|
| 990 | Toolshed: register bundle ChimeraX-ButtonPanel 1.0.1
|
|---|
| 991 | Toolshed: delay_registration buttonpanel
|
|---|
| 992 | Toolshed: register bundle ChimeraX-ResidueFit 1.0.1
|
|---|
| 993 | Toolshed: delay_registration resfit
|
|---|
| 994 | Toolshed: register bundle ChimeraX-SelInspector 1.0
|
|---|
| 995 | Toolshed: register bundle ChimeraX-AlphaFold 1.0
|
|---|
| 996 | Toolshed: delay_registration alphafold match
|
|---|
| 997 | Toolshed: delay_registration alphafold fetch
|
|---|
| 998 | Toolshed: delay_registration alphafold search
|
|---|
| 999 | Toolshed: delay_registration alphafold predict
|
|---|
| 1000 | Toolshed: delay_registration alphafold pae
|
|---|
| 1001 | Toolshed: delay_registration alphafold contacts
|
|---|
| 1002 | Toolshed: delay_registration alphafold dimers
|
|---|
| 1003 | Toolshed: delay_registration alphafold monomers
|
|---|
| 1004 | Toolshed: delay_registration alphafold interfaces
|
|---|
| 1005 | Toolshed: register bundle ChimeraX-MMTF 2.2
|
|---|
| 1006 | Toolshed: register bundle ChimeraX-BlastProtein 2.4.5
|
|---|
| 1007 | Toolshed: delay_registration blastprotein
|
|---|
| 1008 | Toolshed: delay_registration blastpdb
|
|---|
| 1009 | Toolshed: delay_registration blastprotein pull
|
|---|
| 1010 | Toolshed: register bundle ChimeraX-Log 1.1.6
|
|---|
| 1011 | Toolshed: delay_registration echo
|
|---|
| 1012 | Toolshed: delay_registration log
|
|---|
| 1013 | Toolshed: register bundle ChimeraX-ChemGroup 2.0.1
|
|---|
| 1014 | Toolshed: register bundle ChimeraX-BasicActions 1.1.2
|
|---|
| 1015 | Toolshed: delay_registration name
|
|---|
| 1016 | Toolshed: delay_registration name frozen
|
|---|
| 1017 | Toolshed: delay_registration name delete
|
|---|
| 1018 | Toolshed: delay_registration name list
|
|---|
| 1019 | Toolshed: register bundle ChimeraX-MLP 1.1.1
|
|---|
| 1020 | Toolshed: delay_registration mlp
|
|---|
| 1021 | Toolshed: register bundle ChimeraX-coulombic 1.4.3
|
|---|
| 1022 | Toolshed: delay_registration coulombic
|
|---|
| 1023 | Toolshed: register bundle ChimeraX-ModelSeries 1.0.1
|
|---|
| 1024 | Toolshed: delay_registration mseries
|
|---|
| 1025 | Toolshed: register bundle ChimeraX-PDB 2.7.5
|
|---|
| 1026 | Toolshed: register bundle ChimeraX-Segmentations 1.0.4
|
|---|
| 1027 | Toolshed: delay_registration ui view
|
|---|
| 1028 | Toolshed: register bundle ChimeraX-CheckWaters 1.4
|
|---|
| 1029 | Toolshed: register bundle ChimeraX-ESMFold 1.0
|
|---|
| 1030 | Toolshed: delay_registration esmfold contacts
|
|---|
| 1031 | Toolshed: delay_registration esmfold fetch
|
|---|
| 1032 | Toolshed: delay_registration esmfold match
|
|---|
| 1033 | Toolshed: delay_registration esmfold pae
|
|---|
| 1034 | Toolshed: delay_registration esmfold predict
|
|---|
| 1035 | Toolshed: delay_registration esmfold search
|
|---|
| 1036 | Toolshed: register bundle ChimeraX-MapFit 2.0
|
|---|
| 1037 | Toolshed: delay_registration fitmap
|
|---|
| 1038 | Toolshed: register bundle ChimeraX-gltf 1.0
|
|---|
| 1039 | Toolshed: register bundle ChimeraX-MapEraser 1.0.1
|
|---|
| 1040 | Toolshed: delay_registration volume erase
|
|---|
| 1041 | Toolshed: register bundle ChimeraX-Storm 1.0
|
|---|
| 1042 | Toolshed: register bundle ChimeraX-Positions 1.0
|
|---|
| 1043 | Toolshed: register bundle ChimeraX-MapFilter 2.0.1
|
|---|
| 1044 | Toolshed: delay_registration volume add
|
|---|
| 1045 | Toolshed: delay_registration volume bin
|
|---|
| 1046 | Toolshed: delay_registration volume boxes
|
|---|
| 1047 | Toolshed: delay_registration volume copy
|
|---|
| 1048 | Toolshed: delay_registration volume cover
|
|---|
| 1049 | Toolshed: delay_registration volume falloff
|
|---|
| 1050 | Toolshed: delay_registration volume flatten
|
|---|
| 1051 | Toolshed: delay_registration volume flip
|
|---|
| 1052 | Toolshed: delay_registration volume fourier
|
|---|
| 1053 | Toolshed: delay_registration volume gaussian
|
|---|
| 1054 | Toolshed: delay_registration volume laplacian
|
|---|
| 1055 | Toolshed: delay_registration volume localCorrelation
|
|---|
| 1056 | Toolshed: delay_registration volume maximum
|
|---|
| 1057 | Toolshed: delay_registration volume minimum
|
|---|
| 1058 | Toolshed: delay_registration volume median
|
|---|
| 1059 | Toolshed: delay_registration volume morph
|
|---|
| 1060 | Toolshed: delay_registration volume multiply
|
|---|
| 1061 | Toolshed: delay_registration volume new
|
|---|
| 1062 | Toolshed: delay_registration volume octant
|
|---|
| 1063 | Toolshed: delay_registration volume ~octant
|
|---|
| 1064 | Toolshed: delay_registration volume permuteAxes
|
|---|
| 1065 | Toolshed: delay_registration volume resample
|
|---|
| 1066 | Toolshed: delay_registration volume ridges
|
|---|
| 1067 | Toolshed: delay_registration volume scale
|
|---|
| 1068 | Toolshed: delay_registration volume sharpen
|
|---|
| 1069 | Toolshed: delay_registration volume subtract
|
|---|
| 1070 | Toolshed: delay_registration volume threshold
|
|---|
| 1071 | Toolshed: delay_registration volume tile
|
|---|
| 1072 | Toolshed: delay_registration volume unbend
|
|---|
| 1073 | Toolshed: delay_registration volume unroll
|
|---|
| 1074 | Toolshed: delay_registration volume zone
|
|---|
| 1075 | Toolshed: delay_registration volume unzone
|
|---|
| 1076 | Toolshed: delay_registration vop
|
|---|
| 1077 | Toolshed: register bundle ChimeraX-DiffPlot 1.0
|
|---|
| 1078 | Toolshed: delay_registration diffplot
|
|---|
| 1079 | Toolshed: register bundle ChimeraX-Toolbar 1.1.2
|
|---|
| 1080 | Toolshed: register bundle ChimeraX-Hbonds 2.4
|
|---|
| 1081 | Toolshed: delay_registration hbonds
|
|---|
| 1082 | Toolshed: delay_registration ~hbonds
|
|---|
| 1083 | Toolshed: register bundle ChimeraX-Topography 1.0
|
|---|
| 1084 | Toolshed: delay_registration topography
|
|---|
| 1085 | Toolshed: register bundle ChimeraX-SaveCommand 1.5.1
|
|---|
| 1086 | Toolshed: delay_registration save
|
|---|
| 1087 | Toolshed: delay_registration usage save
|
|---|
| 1088 | Toolshed: register bundle ChimeraX-VTK 1.0
|
|---|
| 1089 | Toolshed: register bundle ChimeraX-IHM 1.1
|
|---|
| 1090 | Toolshed: register bundle ChimeraX-MatchMaker 2.1.3
|
|---|
| 1091 | Toolshed: delay_registration matchmaker
|
|---|
| 1092 | Toolshed: delay_registration mmaker
|
|---|
| 1093 | Toolshed: register bundle ChimeraX-PDBBio 1.0.1
|
|---|
| 1094 | Toolshed: register bundle ChimeraX-Nifti 1.1
|
|---|
| 1095 | Toolshed: register bundle ChimeraX-Meeting 1.0.1
|
|---|
| 1096 | Toolshed: delay_registration meeting start
|
|---|
| 1097 | Toolshed: delay_registration meeting join
|
|---|
| 1098 | Toolshed: delay_registration meeting
|
|---|
| 1099 | Toolshed: delay_registration meeting close
|
|---|
| 1100 | Toolshed: delay_registration meeting info
|
|---|
| 1101 | Toolshed: delay_registration meeting settings
|
|---|
| 1102 | Toolshed: delay_registration meeting server
|
|---|
| 1103 | Toolshed: delay_registration meeting unname
|
|---|
| 1104 | Toolshed: delay_registration meeting send
|
|---|
| 1105 | Toolshed: register bundle ChimeraX-Mole 1.0
|
|---|
| 1106 | Toolshed: register bundle ChimeraX-Shell 1.0.1
|
|---|
| 1107 | Toolshed: register bundle ChimeraX-Contacts 1.0.1
|
|---|
| 1108 | Toolshed: delay_registration interfaces
|
|---|
| 1109 | Toolshed: register bundle ChimeraX-SwapRes 2.5
|
|---|
| 1110 | Toolshed: delay_registration swapaa
|
|---|
| 1111 | Toolshed: delay_registration swapna
|
|---|
| 1112 | Toolshed: register bundle ChimeraX-uniprot 2.3
|
|---|
| 1113 | Toolshed: register bundle ChimeraX-BondRot 2.0.4
|
|---|
| 1114 | Toolshed: delay_registration torsion
|
|---|
| 1115 | Toolshed: register bundle ChimeraX-AltlocExplorer 1.1.1
|
|---|
| 1116 | Toolshed: register bundle ChimeraX-AxesPlanes 2.4
|
|---|
| 1117 | Toolshed: delay_registration define plane
|
|---|
| 1118 | Toolshed: delay_registration define axis
|
|---|
| 1119 | Toolshed: register bundle ChimeraX-DistMonitor 1.4.2
|
|---|
| 1120 | Toolshed: delay_registration distance
|
|---|
| 1121 | Toolshed: delay_registration ~distance
|
|---|
| 1122 | Toolshed: register bundle ChimeraX-Morph 1.0.2
|
|---|
| 1123 | Toolshed: delay_registration morph
|
|---|
| 1124 | Toolshed: Initiated toolshed check: 2024-05-07T11:18:10.468129
|
|---|
| 1125 | Toolshed: finished loading bundles
|
|---|
| 1126 | Toolshed: initialize_bundles False
|
|---|
| 1127 | Toolshed: initialize manager rotamers for bundle 'ChimeraX-RotamerLibMgr'
|
|---|
| 1128 | Toolshed: initialize manager presets for bundle 'ChimeraX-PresetMgr'
|
|---|
| 1129 | Toolshed: initialize manager url_schemes for bundle 'ChimeraX-SchemeMgr'
|
|---|
| 1130 | Toolshed: initialize manager data formats for bundle 'ChimeraX-DataFormats'
|
|---|
| 1131 | Toolshed: skip non-autostart manager sequence features for bundle 'ChimeraX-Atomic'
|
|---|
| 1132 | Toolshed: initialize manager alignments for bundle 'ChimeraX-Alignments'
|
|---|
| 1133 | Toolshed: find_bundle ChimeraX-DataFormats True None
|
|---|
| 1134 | Toolshed: initialize manager open command for bundle 'ChimeraX-OpenCommand'
|
|---|
| 1135 | Toolshed: initialize manager items inspection for bundle 'ChimeraX-ItemsInspection'
|
|---|
| 1136 | Toolshed: skip non-autostart manager render by attribute for bundle 'ChimeraX-RenderByAttr'
|
|---|
| 1137 | Toolshed: skip non-autostart manager start structure for bundle 'ChimeraX-BuildStructure'
|
|---|
| 1138 | Toolshed: skip non-autostart manager start structure fragments for bundle 'ChimeraX-BuildStructure'
|
|---|
| 1139 | Toolshed: initialize manager toolbar for bundle 'ChimeraX-Toolbar'
|
|---|
| 1140 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 1141 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1142 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1143 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1144 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1145 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1146 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1147 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1148 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1149 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1150 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1151 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1152 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1153 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1154 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1155 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1156 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 1157 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 1158 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 1159 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 1160 | Toolshed: find_bundle ChimeraX-Nucleotides True None
|
|---|
| 1161 | Toolshed: find_bundle ChimeraX-DataFormats True None
|
|---|
| 1162 | Toolshed: initialize manager save command for bundle 'ChimeraX-SaveCommand'
|
|---|
| 1163 | Toolshed: custom initialization for bundle 'ChimeraX-ToolshedUtils'
|
|---|
| 1164 | Toolshed: custom initialization for bundle 'ChimeraX-RestServer'
|
|---|
| 1165 | Toolshed: custom initialization for bundle 'ChimeraX-Vive'
|
|---|
| 1166 | Toolshed: custom initialization for bundle 'ChimeraX-MouseModes'
|
|---|
| 1167 | Toolshed: custom initialization for bundle 'ChimeraX-Registration'
|
|---|
| 1168 | Toolshed: custom initialization for bundle 'ChimeraX-BugReporter'
|
|---|
| 1169 | Toolshed: custom initialization for bundle 'ChimeraX-ViewDockX'
|
|---|
| 1170 | Toolshed: custom initialization for bundle 'ChimeraX-Markers'
|
|---|
| 1171 | Toolshed: custom initialization for bundle 'ChimeraX-VolumeMenu'
|
|---|
| 1172 | Toolshed: custom initialization for bundle 'ChimeraX-Map'
|
|---|
| 1173 | Toolshed: custom initialization for bundle 'ChimeraX-TapeMeasure'
|
|---|
| 1174 | Toolshed: custom initialization for bundle 'ChimeraX-Dicom'
|
|---|
| 1175 | Toolshed: custom initialization for bundle 'ChimeraX-Atomic'
|
|---|
| 1176 | Toolshed: custom initialization for bundle 'ChimeraX-FunctionKey'
|
|---|
| 1177 | Toolshed: custom initialization for bundle 'ChimeraX-StructMeasure'
|
|---|
| 1178 | Toolshed: custom initialization for bundle 'ChimeraX-Help'
|
|---|
| 1179 | Toolshed: custom initialization for bundle 'ChimeraX-MapSeries'
|
|---|
| 1180 | Toolshed: custom initialization for bundle 'ChimeraX-Tug'
|
|---|
| 1181 | Toolshed: custom initialization for bundle 'ChimeraX-StdCommands'
|
|---|
| 1182 | Toolshed: custom initialization for bundle 'ChimeraX-SwapAA'
|
|---|
| 1183 | Toolshed: custom initialization for bundle 'ChimeraX-Zone'
|
|---|
| 1184 | Toolshed: custom initialization for bundle 'ChimeraX-NMRSTAR'
|
|---|
| 1185 | Toolshed: custom initialization for bundle 'ChimeraX-Label'
|
|---|
| 1186 | Toolshed: custom initialization for bundle 'ChimeraX-CommandLine'
|
|---|
| 1187 | Toolshed: custom initialization for bundle 'ChimeraX-Surface'
|
|---|
| 1188 | Toolshed: custom initialization for bundle 'ChimeraX-BuildStructure'
|
|---|
| 1189 | Toolshed: custom initialization for bundle 'ChimeraX-PickBlobs'
|
|---|
| 1190 | Toolshed: custom initialization for bundle 'ChimeraX-Log'
|
|---|
| 1191 | Toolshed: custom initialization for bundle 'ChimeraX-ChemGroup'
|
|---|
| 1192 | Toolshed: custom initialization for bundle 'ChimeraX-BasicActions'
|
|---|
| 1193 | Toolshed: custom initialization for bundle 'ChimeraX-Segmentations'
|
|---|
| 1194 | Toolshed: custom initialization for bundle 'ChimeraX-MapEraser'
|
|---|
| 1195 | Toolshed: custom initialization for bundle 'ChimeraX-SwapRes'
|
|---|
| 1196 | Toolshed: custom initialization for bundle 'ChimeraX-BondRot'
|
|---|
| 1197 | Toolshed: custom initialization for bundle 'ChimeraX-DistMonitor'
|
|---|
| 1198 | Your computer has Intel graphics driver 7925 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this.
|
|---|
| 1199 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 1200 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 1201 | Toolshed: find_bundle ChimeraX-Toolbar True None
|
|---|
| 1202 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1203 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1204 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1205 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1206 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1207 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1208 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1209 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1210 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1211 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1212 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1213 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1214 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1215 | Toolshed: find_bundle ChimeraX-Shortcuts True None
|
|---|
| 1216 | Toolshed: find_bundle ChimeraX-SelInspector True None
|
|---|
| 1217 | Toolshed: AvailableBundleCache.load: toolshed_url https://cxtoolshed.rbvi.ucsf.edu
|
|---|
| 1218 | Toolshed: AvailableBundleCache.load: url https://cxtoolshed.rbvi.ucsf.edu/bundle/?uuid=d0b35e9f-9c10-5eb4-b095-4abd4d69bfa0&format_version=2
|
|---|
| 1219 | Toolshed: find_bundle ChimeraX-Core True None
|
|---|
| 1220 | Windows fatal exception: access violation
|
|---|
| 1221 |
|
|---|
| 1222 | Thread 0x00001f24 (most recent call first):
|
|---|
| 1223 | File "C:\Program Files\ChimeraX\bin\Lib\socket.py", line 836 in create_connection
|
|---|
| 1224 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 945 in connect
|
|---|
| 1225 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1451 in connect
|
|---|
| 1226 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 979 in send
|
|---|
| 1227 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1041 in _send_output
|
|---|
| 1228 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1281 in endheaders
|
|---|
| 1229 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1332 in _send_request
|
|---|
| 1230 | File "C:\Program Files\ChimeraX\bin\Lib\http\client.py", line 1286 in request
|
|---|
| 1231 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 1348 in do_open
|
|---|
| 1232 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 1391 in https_open
|
|---|
| 1233 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 496 in _call_chain
|
|---|
| 1234 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 536 in _open
|
|---|
| 1235 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 519 in open
|
|---|
| 1236 | File "C:\Program Files\ChimeraX\bin\Lib\urllib\request.py", line 216 in urlopen
|
|---|
| 1237 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\toolshed\available.py", line 62 in load
|
|---|
| 1238 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 467 in reload_available
|
|---|
| 1239 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 975 in run
|
|---|
| 1240 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 1038 in _bootstrap_inner
|
|---|
| 1241 | File "C:\Program Files\ChimeraX\bin\Lib\threading.py", line 995 in _bootstrap
|
|---|
| 1242 |
|
|---|
| 1243 | Current thread 0x000048b4 (most recent call first):
|
|---|
| 1244 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\ui\gui.py", line 285 in event_loop
|
|---|
| 1245 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\__main__.py", line 1006 in init
|
|---|
| 1246 | File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\core\__main__.py", line 1169 in <module>
|
|---|
| 1247 | File "<frozen runpy>", line 88 in _run_code
|
|---|
| 1248 | File "<frozen runpy>", line 198 in _run_module_as_main
|
|---|
| 1249 |
|
|---|
| 1250 | C:\Users\Tennstedt>"C:\Program Files\ChimeraX\bin\ChimeraX-console.exe" --debug > C:\Users\Tennstedt\Desktop\Debug_CimeraX_V01.txt
|
|---|
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
