Opened 19 months ago
Closed 18 months ago
#15108 closed defect (can't reproduce)
Crash showing open dialog
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.4.dev202203170703 (2022-03-17 07:03:24 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Current thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x80040155
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003654 (most recent call first):
File "", line 228 in _call_with_frames_removed
File "", line 1173 in create_module
File "", line 565 in module_from_spec
File "", line 666 in _load_unlocked
File "", line 986 in _find_and_load_unlocked
File "", line 1007 in _find_and_load
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\mmcif\__init__.py", line 18 in
File "", line 228 in _call_with_frames_removed
File "", line 850 in exec_module
File "", line 680 in _load_unlocked
File "", line 986 in _find_and_load_unlocked
File "", line 1007 in _find_and_load
File "", line 1030 in _gcd_import
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\importlib\__init__.py", line 127 in import_module
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 484 in get_module
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 503 in _get_api
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 380 in run_provider
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\manager.py", line 218 in opener_info
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\manager.py", line 209 in open_args
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\cmd.py", line 81 in cmd_open
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 155 in _qt_safe
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation
Thread 0x0000240c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000b44 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001eb8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000604 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003930 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003390 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002324 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001f2c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003268 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003438 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x000032b0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001bfc (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x0000230c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000ac4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002b3c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00003654 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
> volume #1 level 0.0762
> volume #1 level 0.06555
> volume #1 level 0.0762
> open C:/Users/shp/Downloads/7emf.cif
7emf.cif title:
Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation [more
info...]
Chain information for 7emf.cif #2
---
Chain | Description | UniProt
0 | Mediator of RNA polymerase II transcription subunit 27 | MED27_HUMAN
1 | Mediator of RNA polymerase II transcription subunit 28 | MED28_HUMAN
2 | Mediator of RNA polymerase II transcription subunit 29 | MED29_HUMAN
3 | Mediator of RNA polymerase II transcription subunit 30 | MED30_HUMAN
4 | Mediator of RNA polymerase II transcription subunit 31 | MED31_HUMAN
A | Mediator of RNA polymerase II transcription subunit 1 | MED1_HUMAN
B | Unknown Chain (poly A) |
D | Mediator of RNA polymerase II transcription subunit 4 | MED4_HUMAN
F | Mediator of RNA polymerase II transcription subunit 6 | MED6_HUMAN
G | Mediator of RNA polymerase II transcription subunit 7 | MED7_HUMAN
H | Isoform 2 of Mediator of RNA polymerase II transcription subunit 8 |
MED8_HUMAN
I | Mediator of RNA polymerase II transcription subunit 9 | MED9_HUMAN
J | Mediator of RNA polymerase II transcription subunit 10 | MED10_HUMAN
K | Mediator of RNA polymerase II transcription subunit 11 | MED11_HUMAN
N | Mediator of RNA polymerase II transcription subunit 14 | MED14_HUMAN
O | Mediator of RNA polymerase II transcription subunit 15 | MED15_HUMAN
P | Isoform 2 of Mediator of RNA polymerase II transcription subunit 16 |
MED16_HUMAN
Q | Mediator of RNA polymerase II transcription subunit 17 | MED17_HUMAN
R | Mediator of RNA polymerase II transcription subunit 18 | MED18_HUMAN
S | Mediator of RNA polymerase II transcription subunit 19 | MED19_HUMAN
T | Mediator of RNA polymerase II transcription subunit 20 | MED20_HUMAN
U | Mediator of RNA polymerase II transcription subunit 21 | MED21_HUMAN
V | Mediator of RNA polymerase II transcription subunit 22 | MED22_HUMAN
W | Mediator of RNA polymerase II transcription subunit 23 | MED23_HUMAN
X | Mediator of RNA polymerase II transcription subunit 24 | MED24_HUMAN
Y | Mediator of RNA polymerase II transcription subunit 25 | MED25_HUMAN
Z | Mediator of RNA polymerase II transcription subunit 26 | MED26_HUMAN
Non-standard residues in 7emf.cif #2
---
ZN — zinc ion
> fitmap #2 inMap #1
Fit molecule 7emf.cif (#2) to map cryosparc_P100_J229_003_volume_map.mrc (#1)
using 62334 atoms
average map value = 0.004105, steps = 188
shifted from previous position = 44.4
rotated from previous position = 23.4 degrees
atoms outside contour = 62106, contour level = 0.076202
Position of 7emf.cif (#2) relative to cryosparc_P100_J229_003_volume_map.mrc
(#1) coordinates:
Matrix rotation and translation
0.95944757 -0.03579602 -0.27960508 134.51451469
-0.04609754 0.95862710 -0.28090765 103.45379462
0.27809238 0.28240527 0.91810233 -146.94097175
Axis 0.71057995 -0.70349646 -0.01299465
Axis point 0.00000000 617.55630410 339.21994543
Rotation angle (degrees) 23.35178569
Shift along axis 24.71338582
> fitmap #2 inMap #1 search 50
Found 6 unique fits from 50 random placements having fraction of points inside
contour >= 0.100 (6 of 50).
Average map values and times found:
0.4094 (1), 0.2706 (1), 0.2142 (1), 0.1989 (1), 0.09773 (1), 0.07392 (1)
Best fit found:
Fit molecule 7emf.cif (#2) to map cryosparc_P100_J229_003_volume_map.mrc (#1)
using 62334 atoms
average map value = 0.4094, steps = 544
shifted from previous position = 163
rotated from previous position = 57.2 degrees
atoms outside contour = 31414, contour level = 0.076202
Position of 7emf.cif (#2) relative to cryosparc_P100_J229_003_volume_map.mrc
(#1) coordinates:
Matrix rotation and translation
0.07180579 -0.59220493 -0.80258157 674.31804576
-0.98835623 0.06597692 -0.13710947 625.81834183
0.13414875 0.80308176 -0.58057190 355.07218562
Axis 0.67881471 -0.67631594 -0.28601982
Axis point 0.00000000 549.29382022 491.60449126
Rotation angle (degrees) 136.16974323
Shift along axis -67.07160027
Found 6 fits.
> ui mousemode right "rotate selected models"
> select add #2
62334 atoms, 63572 bonds, 59 pseudobonds, 7918 residues, 3 models selected
> view matrix models
> #2,0.67114,0.28963,0.68241,-105.23,0.71458,-0.49781,-0.4915,384.33,0.19736,0.8175,-0.54106,323.39
> fitmap #2 inMap #1
Fit molecule 7emf.cif (#2) to map cryosparc_P100_J229_003_volume_map.mrc (#1)
using 62334 atoms
average map value = 1.13, steps = 180
shifted from previous position = 11
rotated from previous position = 50.8 degrees
atoms outside contour = 6786, contour level = 0.076202
Position of 7emf.cif (#2) relative to cryosparc_P100_J229_003_volume_map.mrc
(#1) coordinates:
Matrix rotation and translation
-0.12264732 0.39374408 0.91100119 35.07867725
0.99166273 0.01205811 0.12829505 13.72689939
0.03953045 0.91914099 -0.39194022 302.58325393
Axis 0.59912481 0.66020411 0.45296799
Axis point 76.06537493 0.00000000 165.15168327
Rotation angle (degrees) 138.70005096
Shift along axis 167.13959029
> transparency 50
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> select subtract #2
Nothing selected
> ui mousemode right zoom
> ball center 125,125,108 radius 50 height 40 caps true
Unknown command: shape ball center 125,125,108 radius 50 height 40 caps true
> shape sphere center 125,125,108 radius 50 height 40 caps true
Expected a keyword
> shape sphere center 125,125,108 radius 50 caps true
Expected a keyword
> shape sphere center 125,125,108 radius 50
> close #3
> shape sphere center 125,125,108 radius 100
> ui mousemode right "translate selected models"
> select add #3
1 model selected
> view matrix models #3,1,0,0,2.9169,0,1,0,30.894,0,0,1,38.792
> view matrix models #3,1,0,0,2.14,0,1,0,32.554,0,0,1,43.963
> view matrix models #3,1,0,0,36.134,0,1,0,101.56,0,0,1,39.763
> view matrix models #3,1,0,0,80.401,0,1,0,266.59,0,0,1,152.16
> view matrix models #3,1,0,0,233.65,0,1,0,162.23,0,0,1,199.99
> transparency sel 50
> view matrix models #3,1,0,0,227.31,0,1,0,185.45,0,0,1,177.57
> view matrix models #3,1,0,0,232.75,0,1,0,191.62,0,0,1,160.75
> vop resample #3 ongrid #1
Non-native QFileDialog supports only local files
> mask ones #3 fullmap true
Unknown command: mask ones #3 fullmap true
> vop gaussian #3
Non-native QFileDialog supports only local files
> volume onesmask #3
Opened mask masked as #4, grid size 101,101,101, pixel 2, shown at step 1,
values int8
> hide #!4 models
> show #!4 models
> hide #3 models
> select subtract #3
Nothing selected
QWindowsNativeFileDialogBase::shellItem : Unhandled scheme: "data"
> vop resample #4 ongrid #1
Opened mask masked resampled as #5, grid size 200,200,200, pixel 3.36, shown
at step 1, values int8
> save C:/Users/shp/Downloads/sphere_P100J229.mrc models #5
> volume #5 level 1
> volume #5 level 0.5117
> open C:/Users/shp/Downloads/cryosparc_P100_J231_mask.mrc
Opened cryosparc_P100_J231_mask.mrc as #6, grid size 200,200,200, pixel 3.36,
shown at level 1, step 1, values float32
> hide #!5 models
> hide #!1 models
> hide #!2 models
> hide #!6 models
> show #!6 models
> show #!1 models
> view all
> select add #6
2 models selected
> select subtract #6
Nothing selected
> select add #6
2 models selected
> hide #!6 models
> show #!6 models
> ui tool show "Side View"
> show #!5 models
> hide #!5 models
> hide #!6 models
> show #!6 models
> select subtract #6
Nothing selected
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> volume #6 level 0.5019
> show #!5 models
> hide #!5 models
> transparency #1.1#6.1 0
> select add #6
2 models selected
> transparency sel 50
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4.dev202203170703 (2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> C:\\\Users\\\shp\\\Downloads\\\cryosparc_P100_J242_series_all_clusters\\\J242_cluster_018.mrc
Opened J242_cluster_018.mrc as #1, grid size 200,200,200, pixel 3.36, shown at
level 0.365, step 1, values float32
OpenGL version: 3.3.0 Core Profile Context 24.4.1.240409
OpenGL renderer: AMD Radeon RX 6600
OpenGL vendor: ATI Technologies Inc.
Locale: ko_KR.cp949
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt platform: windows
Manufacturer: To Be Filled By O.E.M.
Model: To Be Filled By O.E.M.
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,049,161,728
MaxProcessMemory: 137,438,953,344
CPU: 12 AMD Ryzen 5 5600G with Radeon Graphics
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.36.2
ChimeraX-AtomicLibrary: 6.1.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202203170703
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.9
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.16.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.30.0
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.2
kiwisolver: 1.4.0
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.28
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.7
PyQt6-commercial: 6.2.3
PyQt6-sip: 13.2.0
PyQt6-WebEngine-commercial: 6.2.1
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 303
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.1
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 18 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash showing open dialog |
comment:2 by , 18 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
Hi Si Hoon,
--Eric