![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 26, 2019:
- 6:47 PM Ticket #2257 (Slow volume series playback with daily build, 2x faster with devel build) closed by
- not a bug: So the problem is a quirk of Qt update rates. It will be important to …
- 5:33 PM Ticket #2258 (Volume series flickers in VR when Model Panel shown) closed by
- fixed: Fixed by Eric's changes.
- 5:17 PM Ticket #2258 (Volume series flickers in VR when Model Panel shown) created by
- […]
- 3:13 PM Ticket #2257 (Slow volume series playback with daily build, 2x faster with devel build) created by
- […]
- 10:42 AM Ticket #2252 (Model panel color buttons show multiple color chooser windows) closed by
- fixed: Pushed what I believe is a fix. Needs testing on Windows.
- 10:29 AM Ticket #2251 (Label (picking) wrong on second screen) closed by
- fixed: Fixed. Made ChimeraX detect when it moves to a display with a …
- 10:07 AM Ticket #2256 (Runing multiple command lines in ChimeraX) closed by
- not a bug: Forwarded to chimerax-users for response there.
- 6:59 AM Ticket #2256 (Runing multiple command lines in ChimeraX) created by
- […]
- 6:00 AM Ticket #2255 (ISOLDE run from ChimeraX 0.9 daily rather than final) closed by
- not a bug
- 3:18 AM Ticket #2255 (ISOLDE run from ChimeraX 0.9 daily rather than final) created by
- […]
Jul 25, 2019:
- 6:51 PM Ticket #2254 (Volume series playback as surface switches to image style) closed by
- fixed: Fixed. Code was remembering that the desired initial display style …
- 6:49 PM Ticket #2254 (Volume series playback as surface switches to image style) created by
- […]
- 6:07 PM Ticket #2253 (ChimeraX bug report submission) closed by
- fixed: Fixed by limiting the maximum number of multishadows. Since that will …
- 5:08 PM Ticket #2253 (ChimeraX bug report submission) created by
- […]
- 1:28 PM Ticket #2252 (Model panel color buttons show multiple color chooser windows) created by
- […]
Jul 24, 2019:
- 3:02 PM Ticket #2251 (Label (picking) wrong on second screen) created by
- […]
- 11:06 AM Ticket #2250 (Simplify tool-author look up) created by
- In order to make it less onerous to deal with bugs for third-party …
- 1:54 AM Ticket #2249 (Occasional segmentation fault in MatchMaker?) created by
- I'm running a script over a very large number of models (re-running an …
Jul 23, 2019:
- 6:17 PM ChangeLog edited by
- (diff)
- 4:43 PM Ticket #2248 (KeyError hiding tools when map series closed) created by
- […]
- 10:54 AM Ticket #2247 (Residue::find_atom missing from _ISOLDES_ libmolc.so?!?) closed by
- duplicate: Duplicate of #2161, which in turn is really because of #1673 …
- 10:47 AM Ticket #2246 (Seq View removing handler from wrong trigger set) closed by
- duplicate: Fixed on 7/9
- 10:46 AM Ticket #2245 (Seq View removing handler from wrong trigger set) closed by
- duplicate: Fixed on 7/9
- 10:44 AM Ticket #2247 (Residue::find_atom missing from _ISOLDES_ libmolc.so?!?) created by
- […]
- 10:42 AM Ticket #2244 (Alignment session-restore failure) closed by
- duplicate: Fixed on 7/11
- 10:23 AM Ticket #2246 (Seq View removing handler from wrong trigger set) created by
- […]
- 10:14 AM Ticket #2245 (Seq View removing handler from wrong trigger set) created by
- […]
- 10:14 AM Ticket #2244 (Alignment session-restore failure) created by
- […]
Jul 22, 2019:
- 11:54 AM Ticket #2243 (color by atom/res attribute should automatically also color molecular ...) created by
- ...if target includes surface, which it does by default. Presumably …
- 11:51 AM Ticket #2242 (coloring surface cap by map looks bad because cap triangles are ...) created by
- As per the summary, the streaky, wrong-looking coloring by map value …
- 11:13 AM Ticket #2241 (glGetIntegerv: invalid enumerant) closed by
- nonchimerax: This error indicates a bug in your system OpenGL graphics driver. …
- 11:12 AM Ticket #2240 (glClear: invalid enumerant) closed by
- nonchimerax: This error indicates a bug in your system OpenGL graphics driver. …
- 10:53 AM Ticket #2228 (Saving as PDB with 2-letter chain id gives unreadable file) closed by
- can't reproduce: Doesn't seem to happen with daily builds, only development builds. …
- 10:12 AM Ticket #2239 (MD Viewer: no ligand) closed by
- nonchimerax: Hi JD, This seems to be a limitation of the MD viewer on the toolshed …
- 5:28 AM Ticket #2241 (glGetIntegerv: invalid enumerant) created by
- […]
- 5:26 AM Ticket #2240 (glClear: invalid enumerant) created by
- […]
- 2:24 AM Ticket #2239 (MD Viewer: no ligand) created by
- […] save_test.pdb
Jul 19, 2019:
- 5:54 PM Ticket #2216 (Selection outline issues) closed by
- fixed: Fixed. My new laptop with Radeon Pro Vega 20 graphics had the same …
Jul 18, 2019:
- 9:45 PM Ticket #2219 (Errors and warnings opening mmCIF saved by ChimeraX) closed by
- fixed: User upgraded to daily build. And started a new ticket, #2230.
- 6:43 PM Ticket #1768 (mmCIF export: chain ID KeyError) closed by
- fixed: Needed to look at all submodels for figure the set of non-polymer entities.
- 4:13 PM Ticket #1195 (NMR ensemble connectivity terrible) closed by
- fixed: Fixed.
- 2:27 PM 2019-07-18 created by
- 2:08 PM DeveloperMeetings edited by
- (diff)
- 12:53 PM Ticket #2238 (Error starting chimerax --stereo) created by
- From: "Hartmuth, Klaus" Subject: Re: #2232: set_stereo_buffer: …
- 12:40 PM Ticket #2237 (Side view zombie window) created by
- […]
- 10:31 AM Ticket #2236 (Port Chimera's copy/combine) created by
- As per summary
Jul 17, 2019:
- 10:26 PM Ticket #2235 (Close VR gui by clicking a close button on the gui) created by
- Would like a close button on the VR gui (small X icon) to close the …
- 10:16 PM Ticket #2234 (Move VR gui panels by dragging title bar) created by
- Would like to be able to move or scale VR gui panels by dragging a the …
- 4:41 PM Ticket #1917 (Crash reading ChimeraX-generated mmCIF file) closed by
- fixed: This file opens currently in ChimeraX without errors. I don't believe …
- 1:05 PM Ticket #1490 (add support for displayedOnly to mmCIF writer) closed by
- fixed: Fixed as part of #2229
- 1:03 PM Ticket #2229 (Save mmCIF selected atoms only) closed by
- fixed: Added support for selectedOnly and displayedOnly.
- 12:21 PM Ticket #2233 (info chain: 'Atoms' object has no attribute 'unique_chains') closed by
- fixed
- 12:08 PM Ticket #2224 (Problem opening various PDBDEV files: File is not a zip file) closed by
- nonchimerax: Truncated zip file fetched. Not sure why that did not generate an …
- 11:06 AM Ticket #2233 (info chain: 'Atoms' object has no attribute 'unique_chains') created by
- […]
- 9:45 AM Ticket #2231 (mmCIF: new chain residues saved out of order?) closed by
- can't reproduce: The mmCIF writer uses the structure's chains to figure out the …
- 8:31 AM Ticket #2231 (mmCIF: new chain residues saved out of order?) created by
- Unfortunately I can't seem to replicate this now, but just flagging it …
- 4:00 AM Ticket #2230 (Exported mmCIF not compatible with other software) created by
- […]
Jul 16, 2019:
- 3:57 PM Ticket #2229 (Save mmCIF selected atoms only) created by
- […]
- 3:55 PM Ticket #2228 (Saving as PDB with 2-letter chain id gives unreadable file) created by
- […] test.pdb
- 3:42 PM Ticket #2227 (split command loses helix assignments) closed by
- fixed: Fixed. Code was setting residue is_helix and is_strand attributes, …
- 3:38 PM Ticket #2227 (split command loses helix assignments) created by
- […]
- 3:08 PM Ticket #2226 (wrapped C/C++ object of type QOpenGLContext has been deleted) created by
- […]
- 1:14 PM Ticket #2225 (Make VR zoom mode not move scene far away) closed by
- fixed: Done. The zoom center is calculated in the normal way as midpoint …
- 1:13 PM Ticket #2225 (Make VR zoom mode not move scene far away) created by
- VR users often zoom scaling the scene bigger and bigger until it clips …
- 11:10 AM Ticket #2196 (index out of bounds during color bypolymer) closed by
- fixed: Fixed. Incorrect C++ code, side-effect in assignment.
- 9:13 AM Ticket #2224 (Problem opening various PDBDEV files: File is not a zip file) created by
- […]
Jul 15, 2019:
- 9:45 PM Ticket #2160 (QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window) closed by
- can't reproduce: Can't reproduce yet.
- 5:43 PM Ticket #2223 (RFE add "view sel" icon) closed by
- fixed: Added view selected to graphics toolbar.
- 4:42 PM Ticket #2193 ("vr off" should remove VR model) closed by
- fixed: Fixed.
- 2:39 PM Ticket #2223 (RFE add "view sel" icon) created by
- Suggest adding Graphics icon (image for icon attached) that does "view …
- 2:35 PM Ticket #2222 (obj export (or interpretation on import?) seems wrong) closed by
- fixed: Fixed. With instanced objects the OBJ file written had incorrect …
- 11:47 AM Ticket #2218 (Slow (distance) label redraw with shadows) closed by
- fixed: Fixed. Rotation became very slow for my new iMac with 6n60 and one …
- 11:38 AM Ticket #2222 (obj export (or interpretation on import?) seems wrong) created by
- open 5mv5 molmap helix 8 save file.obj close open file.obj ... on 3 …
- 10:57 AM Ticket #2221 (color zone not saved in sessions) closed by
- fixed: Fixed. Color zone and surface zone session saving was broken by a …
- 10:54 AM Ticket #2221 (color zone not saved in sessions) created by
- Begin forwarded message: From: Rasmus Kock Flygaard Subject: …
- 10:34 AM Ticket #2220 (Best effort to save session despite circular dependencies) created by
- […]
- 8:31 AM Ticket #2219 (Errors and warnings opening mmCIF saved by ChimeraX) created by
- […]
- 2:14 AM Ticket #2218 (Slow (distance) label redraw with shadows) created by
- […]
Jul 13, 2019:
- 11:58 AM Ticket #2217 (Restored models for Objects of Basic Actions are None) created by
- […]
- 2:12 AM Ticket #2184 (Problematic mmCIF file) closed by
- fixed: Improved the code that deals with missing entities. Give warning …
Jul 12, 2019:
- 3:23 PM Ticket #2216 (Selection outline issues) created by
- […]
- 11:44 AM Ticket #2192 (Stop coordset) closed by
- fixed: Added coordset stop command. Takes an optional structures argument.
- 11:12 AM Ticket #2215 (Incorrect version of Clipper installed in ChimeraX 0.9) closed by
- duplicate
- 11:11 AM Ticket #2215 (Incorrect version of Clipper installed in ChimeraX 0.9) reopened by
- 11:08 AM Ticket #2209 (Hang initializing bundles (bad cache?)) closed by
- duplicate: Hi Lukas, We have had this problem reported by others, so I am going …
- 10:42 AM Ticket #2210 (atomspec balloon blanks out fullscreen ChimeraX) closed by
- fixed
- 10:41 AM Ticket #2210 (atomspec balloon blanks out fullscreen ChimeraX) reopened by
- 10:38 AM Ticket #2140 (Atom balloon on mouse hover vanishes immediately) reopened by
- The fix for this broke balloons when in fullscreen, bug #2210, so I've …
- 10:37 AM Ticket #2210 (atomspec balloon blanks out fullscreen ChimeraX) closed by
- fixed: Fixed. Change a few weeks ago #2140 to fix vanishing balloons on Mac …
- 9:07 AM Ticket #2215 (Incorrect version of Clipper installed in ChimeraX 0.9) closed by
- duplicate: Duplicate of #2214.
- 2:53 AM Ticket #2215 (Incorrect version of Clipper installed in ChimeraX 0.9) created by
- […]
- 2:52 AM Ticket #2214 (Incorrect version of Clipper installed in ChimeraX 0.9) created by
- […]
Jul 11, 2019:
- 7:20 PM Ticket #2213 (Can't add volume threshold with context menu) closed by
- fixed: Fixed. Problem was that creating volume surface for new threshold …
- 7:17 PM Ticket #2212 (Can't delete volume threshold on histogram) closed by
- fixed: Fixed. This was caused by the context menu registration changing from …
- 7:14 PM Ticket #2213 (Can't add volume threshold with context menu) created by
- […]
- 7:13 PM Ticket #2212 (Can't delete volume threshold on histogram) created by
- […]
- 2:59 PM Ticket #2203 (crash in QMainWindow::removeDockWidget (called internally)) closed by
- can't reproduce
- 2:31 PM Ticket #2202 (tile command ignores volume models) closed by
- duplicate: Duplicate of #2207
- 2:28 PM Ticket #2201 (dialogs completely gray after being shown and hidden once) closed by
- duplicate: Duplicate of #2211; adding reporter to recipient list for that ticket.
- 2:21 PM Ticket #2200 (_handlers weak-value already gone) closed by
- fixed: Switched to strong-ref dict since opened models will always call …
- 1:52 PM Ticket #2197 (map-open func sometimes returns None) closed by
- fixed: Fixed. The density map file format registration got messed up by …
- 12:58 PM Ticket #2199 (map-open func sometimes returns None) closed by
- duplicate: Duplicate of #2197
- 12:56 PM Ticket #2198 (map-open func sometimes returns None) closed by
- duplicate: Duplicate of #2197; adding reporter to recipient list for that ticket
- 11:54 AM Ticket #2211 (dialogs completely gray after being shown and hidden once) created by
- Observed by multiple people on (Mac only?) laptops at the SLAC …
- 11:46 AM Ticket #2210 (atomspec balloon blanks out fullscreen ChimeraX) created by
- Observed by at least 3 people on Mac laptops at the SLAC workshop …
- 11:44 AM Ticket #2194 (no 'self' in restore_snapshot) closed by
- fixed: Hi Kelvin, Thanks for reporting this and providing a session I could …
- 11:33 AM Ticket #2209 (Hang initializing bundles (bad cache?)) created by
- […]
- 11:17 AM Ticket #2208 (molecular surface (+ any caps) does not update during atomic ...) created by
- open any atomic trajectory (e.g. open 1plx coordset true) show surface …
- 11:09 AM Ticket #2207 (tile command ignores volume models) created by
- Currently it just ignores any maps if you have both atomic and map …
Jul 10, 2019:
- 7:56 PM Ticket #2206 (Hang initializing bundles (bad cache?)) created by
- […]
- 7:00 PM Ticket #2172 (reverse palettes not working correctly for color-by-value without ...) closed by
- fixed: Fixed in 1d2b134e0. When reversing colormaps, the "values …
- 3:36 PM Ticket #2205 (ChimeraX closed when loading ISOLDE demo file) created by
- […]
- 3:28 PM Ticket #2204 (ISOLDE: ramaplot: wrapped C/C++ object of type QVBoxLayout has been deleted) created by
- […]
- 1:18 PM Ticket #2203 (crash in QMainWindow::removeDockWidget (called internally)) created by
- […]
- 1:08 PM Ticket #2202 (tile command ignores volume models) created by
- […]
- 11:49 AM Ticket #2189 (register registration scheme (cxreg)) closed by
- fixed: Fixed in 31d684737.
- 11:48 AM Ticket #2201 (dialogs completely gray after being shown and hidden once) created by
- […]
- 11:25 AM Ticket #2200 (_handlers weak-value already gone) created by
- […]
- 11:00 AM Ticket #2199 (map-open func sometimes returns None) created by
- […]
- 10:59 AM Ticket #2198 (map-open func sometimes returns None) created by
- […]
- 10:55 AM Ticket #2197 (map-open func sometimes returns None) created by
- […]
- 10:01 AM Ticket #2196 (index out of bounds during color bypolymer) created by
- […]
- 6:33 AM Ticket #2195 (Attempt to make deleted context current) created by
- […]
- 5:46 AM Ticket #2194 (no 'self' in restore_snapshot) created by
- […] ralf dock model.cxs
Jul 9, 2019:
- 10:21 PM Ticket #2187 (Bizarre file name quoting for Windows drag and drop) closed by
- fixed: This bug has been fixed. The bug was reproduced by dragging and …
- 6:25 PM Ticket #2193 ("vr off" should remove VR model) created by
- […]
- 6:24 PM Ticket #2192 (Stop coordset) created by
- […]
- 5:56 PM Ticket #2191 (ChimeraX bug report submission) closed by
- fixed
- 5:50 PM Ticket #2191 (ChimeraX bug report submission) created by
- […]
- 5:07 PM Ticket #2188 (glUniformMatrix4fv error while in VR) closed by
- can't reproduce: I don't think the mirroring will make any significant performance …
- 3:37 PM Ticket #2190 ("hat" symbol stripped from logged color command with reverse palette) created by
- open 1zik rainbow palette puor rainbow palette <hat-symbol>puor The …
- 3:03 PM Ticket #2189 (register registration scheme (cxreg)) created by
- Starting the Registration tool produces: toolshed show Registration …
- 2:30 PM Ticket #2188 (glUniformMatrix4fv error while in VR) created by
- […]
- 2:24 PM Ticket #2187 (Bizarre file name quoting for Windows drag and drop) created by
- […]
- 12:30 PM Ticket #2186 (Add toggle option to show command) created by
- From: Alexis Rohou Subject: [chimerax-users] feature request / …
- 11:34 AM Ticket #2185 (AddH option to use residue templates for guidance) created by
- I recall this being suggested during the conversation arising from a …
- 11:12 AM Ticket #2184 (Problematic mmCIF file) created by
- Will attach the offending .cif file (it's an unpublished and likely …
- 11:12 AM Ticket #2183 (Deleting 'selection changed' trigger handler failed) closed by
- fixed: region browser's destroy() didn't account for the fact that selection …
- 10:31 AM Ticket #2183 (Deleting 'selection changed' trigger handler failed) created by
- […]
Jul 8, 2019:
- 5:45 PM Ticket #1982 (bond selection not shown as selection in Sequence Viewer) closed by
- fixed: Fixed. Not pushing until after workshop.
- 4:58 PM Ticket #1901 (RFE: add "running tools" section to Tools menu) closed by
- fixed: Implemented "running tools" section of Tools menu, though I won't push …
- 4:16 PM Ticket #2181 (Choose box face: shapes not aligned) closed by
- duplicate: Duplicate of #2163. Reported by Adam Frost.
- 4:15 PM Ticket #2163 (Choosing box face: shapes not aligned) closed by
- fixed: Fixed. Using mouse in move planes mode raised this error when in VR …
- 3:10 PM Ticket #2182 (Session restore for maps: KeyError: 'map ids') closed by
- fixed: Fixed. ChimeraX session restore of multichannel image series was …
- 2:37 PM Ticket #2182 (Session restore for maps: KeyError: 'map ids') created by
- […]
- 11:23 AM Ticket #2181 (Choose box face: shapes not aligned) created by
- […]
- 10:43 AM Ticket #2180 (QTimer not in QThread (offscreen rendering not working)) created by
- hello, just tested with 0.91 version of Chimera-X. There is still a …
- 8:26 AM Ticket #2179 (Non-graphics windows blank after structure load) created by
- […] chimeraX error WindowsX.png
Jul 5, 2019:
- 10:44 PM Ticket #2177 (Make VR meeting show Oculus or Vive controller layout) created by
- VR meeting currently always shows other participant's hand controllers …
- 5:28 PM Ticket #2085 (Crash in Qt in Mac graphics driver) closed by
- fixed: Tentatively closing this since we have had no further reports of this …
- 4:25 PM Ticket #2175 (Added hydrogen names) closed by
- fixed
- 1:12 PM Ticket #1682 (Expose mmcif template functions to Python) closed by
- fixed: The chief/link atom properties weren't being wrapped correctly in that …
- 12:08 PM Ticket #2097 (Undo aggregate and block context managers) closed by
- fixed
- 12:07 PM Ticket #2124 (Bundle's initialize() method doesn't get called on first installation) closed by
- fixed
- 11:35 AM Ticket #1682 (Expose mmcif template functions to Python) reopened by
- getattr(xxx, 'atoms') works, so it a bug that's tickled by the Shell …
- 8:01 AM Ticket #2176 (Session restore: "named views" is None) created by
- […]
- 4:30 AM Ticket #2175 (Added hydrogen names) created by
- […]
Jul 4, 2019:
Jul 3, 2019:
- 5:19 PM Ticket #2173 (Optimize morph command for near identical sequences) created by
- […]
- 4:27 PM ChangeLog edited by
- (diff)
- 4:21 PM Ticket #2172 (reverse palettes not working correctly for color-by-value without ...) created by
- open 2gbp color by bfactor pal rainbow ... OK, you can see whole range …
- 2:38 PM Ticket #2168 (Graphics context menu: spurious drag select; also delete hydrogens) closed by
- fixed: Spurious drag selection also fixed.
- 11:18 AM Ticket #2171 (Segment Map and Fit to Segments in-tool menus sometimes become transparent) created by
- Screenshot attached. Reassign/change component as needed. This is …
- 11:01 AM Ticket #2170 (Better VR button assignments for Oculus hand controllers) created by
- Make better VR default button assignments for Oculus hand controllers. …
- 10:25 AM Ticket #2169 (Side View: self.view is None) closed by
- duplicate: Duplicate of #2162
- 10:23 AM Ticket #2117 (map stopped updating) closed by
- can't reproduce: Likely a previous error stopped graphics rendering.
- 8:24 AM Ticket #2169 (Side View: self.view is None) created by
- […]
- 6:18 AM Ticket #2168 (Graphics context menu: spurious drag select; also delete hydrogens) created by
- […]
- 4:20 AM Ticket #2167 (ChimeraX installer for Chocolatey package manager) created by
- According to the documentation on Travis-CI …
Jul 2, 2019:
- 4:57 PM Ticket #2165 (Mac OpenGL crash opening session with segmented map) closed by
- nonchimerax: This session opens fine on my iMac (macOS 10.14, Mojave) machine and …
- 4:50 PM Ticket #2166 (Don't cap clipped volume meshes) created by
- Want volume mesh surfaces not to show caps when clipped.
- 4:46 PM Ticket #2165 (Mac OpenGL crash opening session with segmented map) created by
- […]
- 4:15 PM Ticket #2157 (want list of available bundles to actually be installable) closed by
- fixed: Fixed in acc84bf99. Uninstallable bundles (ones whose …
- 4:09 PM Ticket #2164 (Fit to Segments only works when Segment Map tool is also shown?) closed by
- fixed: Fixed. This was because closing the segment map tool actually closed …
- 2:57 PM Ticket #2164 (Fit to Segments only works when Segment Map tool is also shown?) created by
- As far as I can tell, with the same map and atomic models open and the …
- 2:32 PM Ticket #2163 (Choosing box face: shapes not aligned) created by
- […]
- 1:57 PM Ticket #2162 (Side View: self.view.render is None) created by
- […]
- 12:46 PM Ticket #2161 (Residue::find_atom missing from _ISOLDES_ libmolc.so?!?) closed by
- duplicate: It's ticket #1673. I'll add a comment to it and close this.
- 12:27 PM Ticket #2159 (self._positions is None) closed by
- fixed: Tristan says he fixed this.
- 12:21 PM Ticket #2153 (traceback from Fit to Segments "Fit... Close placed copies") closed by
- fixed: Fixed. Using Close Placed Copies twice gave this error because the …
- 12:14 PM Ticket #2152 (Fit to Segments menu File... Save[..] problems) closed by
- fixed: Fixed. I have renamed the Fit to Segments menu entry "Save fit map …
- 11:34 AM Ticket #2161 (Residue::find_atom missing from _ISOLDES_ libmolc.so?!?) created by
- […]
- 11:13 AM Ticket #2151 ('FitSegmentsDialog' object has no attribute 'Close') closed by
- fixed: Fixed. Fit button was trying to close the previous fit dialog and …
- 10:54 AM Ticket #2150 (Segment Map menu "regions...color density map" makes density map disappear) closed by
- fixed: Fixed. Segger uses RGBA colors in range 0-1 which often need to be …
- 8:43 AM Ticket #2160 (QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window) created by
- […]
Jul 1, 2019:
- 5:48 PM Ticket #2158 (usage for unknown commands should not be silent) closed by
- fixed
- 4:42 PM Ticket #2145 (Clearing Atom's aniso_u doesn't register as change) closed by
- fixed: Okay, clearing anise_u now notifies the change tracker as appropriate.
- 4:11 PM Ticket #2159 (self._positions is None) created by
- While trying to reproduce the maybe-double-model-delete error, instead …
- 3:19 PM Ticket #2148 (Fit in Map error when models closed) closed by
- fixed: Fixed. Auto-selection of "special" items caused self.value to be …
- 2:05 PM Ticket #2155 (Markers GUI no longer needs to remove itself from registered state managers) closed by
- fixed: Fixed. Session code no longer registers attributes starting with …
- 2:04 PM Ticket #2158 (usage for unknown commands should not be silent) created by
- And if the command is available, but uninstalled, that should be noted too.
- 2:02 PM Ticket #2139 ("Uninstalled bundle" should occur regardless of command arguments) closed by
- fixed: Fixed. Consumes the rest of the line, including semicolons.
- 1:54 PM Ticket #2157 (want list of available bundles to actually be installable) created by
- Would like Toolshed._get_available_bundles() to return the bundles …
- 1:12 PM Ticket #2156 (Qt initialization) created by
- When I run "debug test", output from one of the tests is: […] I …
- 1:08 PM Ticket #2155 (Markers GUI no longer needs to remove itself from registered state managers) created by
- […]
- 12:36 PM Ticket #2140 (Atom balloon on mouse hover vanishes immediately) closed by
- fixed: Made a separate ticket #2154 for the problem described in comment 3 …
- 12:34 PM Ticket #2154 (No balloon help if continuous redraw) created by
- […]
- 12:03 PM Ticket #2153 (traceback from Fit to Segments "Fit... Close placed copies") created by
- I *think* I added symmetry copies (1gc1 fit into EMDB 5020) with the …
- 11:28 AM Ticket #2152 (Fit to Segments menu File... Save[..] problems) created by
- In File to Segments,trying to use File menu to save things. Choosing …
- 11:22 AM Ticket #2146 (self._positions is None) closed by
- duplicate: Fixed weeks ago. Happened if a volume that was going to be displayed …
- 11:18 AM Ticket #2151 ('FitSegmentsDialog' object has no attribute 'Close') created by
- […]
- 10:58 AM Ticket #2147 (self._positions is None) closed by
- duplicate: duplicate of #2146
- 10:54 AM Ticket #2150 (Segment Map menu "regions...color density map" makes density map disappear) created by
- Open map and use Segment Map to make segmentation model, and then …
- 10:45 AM Ticket #2142 (Atom name > 4 characters) closed by
- duplicate: Duplicate of #2141
- 10:34 AM Ticket #2149 (Command "clip list" reports wrong sign for far plane) closed by
- fixed: Fixed. Also back plane in scene clip planes had wrong sign. Problem …
- 10:31 AM Ticket #2149 (Command "clip list" reports wrong sign for far plane) created by
- […]
- 10:29 AM Ticket #2148 (Fit in Map error when models closed) created by
- […]
- 10:10 AM ChangeLog edited by
- (diff)
- 7:46 AM Ticket #2147 (self._positions is None) created by
- […]
- 7:42 AM Ticket #2146 (self._positions is None) created by
- […]
- 6:23 AM Ticket #2145 (Clearing Atom's aniso_u doesn't register as change) created by
- Pretty much what the summary says. :) Would be ideal if `Atom.aniso_u6 …
- 5:38 AM Ticket #2144 (Model.delete() called twice?) created by
- […]
Jun 29, 2019:
- 12:44 PM Ticket #2143 (Mouse mode that centers and pivots) created by
- […]
- 11:12 AM Ticket #2142 (Atom name > 4 characters) created by
- […]
- 11:10 AM Ticket #2141 (Atom name > 4 characters) created by
- […]
Jun 28, 2019:
- 8:23 PM Ticket #2140 (Atom balloon on mouse hover vanishes immediately) created by
- […]
- 3:47 PM Ticket #2139 ("Uninstalled bundle" should occur regardless of command arguments) created by
- […]
- 3:33 PM Ticket #2134 ('main_view' needs to register itself as a state manager) closed by
- fixed: Reverted to previous code, with slight tweak to avoid adding …
- 11:01 AM Ticket #2137 (Volume set_parameters(cap_faces=False) no longer effective) closed by
- can't reproduce: I opened a map (emd 1080) set a low contour level and used …
- 10:52 AM Ticket #2138 (Keep directory history in Save File dialog) created by
- From: Alexis Rohou Subject: [chimerax-users] suggestion for ChimeraX …
- 9:54 AM Ticket #2135 (Structure in a bad state can crash ChimeraX) closed by
- wontfix: I am open to suggestions, but I have no inclination to guard every use …
- 9:08 AM Ticket #2137 (Volume set_parameters(cap_faces=False) no longer effective) created by
- I think this is meant to be superseded by `VolumeSurface.clip_cap = …
- 8:26 AM Ticket #2136 (add "basic primer" for ChimeraX python scripting) created by
- Similar to the Chimera one …
- 8:08 AM Ticket #2135 (Structure in a bad state can crash ChimeraX) created by
- […]
- 5:26 AM Ticket #2134 ('main_view' needs to register itself as a state manager) created by
- […]
Jun 27, 2019:
- 6:20 PM Ticket #1054 (command "open" doesn't work on URLs without suffix) closed by
- fixed: The last example works when given as: open …
- 5:36 PM Ticket #2050 (Crash drawing Side View after close) closed by
- fixed: Fixed in changeset:ee83b922765b17928d4054cc20e967cc39ba565d. Called …
- 2:53 PM Ticket #1682 (Expose mmcif template functions to Python) closed by
- fixed: Extended the mmCIF module with two additional functions: […] …
- 2:29 PM Ticket #2105 (mmCIF save: local variable '_1to3' referenced before assignment) closed by
- fixed: Fixed.
- 1:57 PM Ticket #2131 ('view' command: 'Objects' object is not iterable) closed by
- duplicate
- 1:39 PM Ticket #2132 (Crash in Qt handling event) closed by
- fixed: Hi Diogo, We _think_ this problem is fixed for daily builds dated …
- 1:30 PM Ticket #2132 (Crash in Qt handling event) created by
- […]
- 12:29 PM Ticket #2123 (self._child_drawings.remove(d): not in list (after earlier KeyError)) closed by
- duplicate: The last tracebacks appear to result from using "volume zone" with the …
- 12:29 PM Ticket #2131 ('view' command: 'Objects' object is not iterable) created by
- […]
- 12:23 PM Ticket #2119 (Surface capping not working) closed by
- fixed: Duplicate of #2130. Problem was "surface dust" caused caps not to …
- 12:19 PM Ticket #2130 (Surface caps not working consistently) closed by
- fixed: Fixed. Surface capping was not making caps if a surface had triangles …
- 11:45 AM Ticket #2125 (Qt::AA_ShareOpenGLContexts) closed by
- duplicate: Duplicate of #2121. This warning is a Qt bug from QWebEngine.
- 11:44 AM Ticket #2120 ('view' command: 'Objects' object is not iterable) closed by
- fixed: Fixed in bf9fe95e2. Undo code got too clever and tried to …
- 11:34 AM Ticket #2127 (Silhouettes on transparent drawings) closed by
- duplicate: Making silhouettes transparent is requested in ticket #607. …
- 11:29 AM Ticket #2113 (User installed tools should take precedence over app-included tools) closed by
- fixed
- 11:28 AM Ticket #2130 (Surface caps not working consistently) created by
- […] image1.png
- 11:27 AM ChangeLog edited by
- (diff)
- 11:20 AM Ticket #2129 (Surface caps not working) closed by
- not a bug: As your "surface cap" command says, you have surface caps turned off. …
- 11:16 AM Ticket #2128 ('view' command: model is None) closed by
- duplicate: Bug in 0.8 fixed long ago.
- 11:13 AM Ticket #2129 (Surface caps not working) created by
- […]
- 6:19 AM Ticket #2128 ('view' command: model is None) created by
- […]
- 6:00 AM Ticket #2127 (Silhouettes on transparent drawings) created by
- […]
- 5:50 AM Ticket #2126 (Glitchy dual-screen behavior) created by
- […]
- 3:23 AM Ticket #2125 (Qt::AA_ShareOpenGLContexts) created by
- […]
- 1:28 AM Ticket #2124 (Bundle's initialize() method doesn't get called on first installation) created by
- In order to correctly load its libraries for OpenCL and CUDA, OpenMM …
Jun 26, 2019:
- 4:45 PM Ticket #2123 (self._child_drawings.remove(d): not in list (after earlier KeyError)) created by
- […]
- 4:44 PM Ticket #2114 (self._positions is None) closed by
- can't reproduce: I tried this in the same ChimeraX daily build (6/25/2019) on Windows …
- 4:32 PM Ticket #2116 (Adjust surface geometry: not enough values to unpack) closed by
- fixed: The subdivideSurface unpack error is fixed and the Cut fraction error …
- 4:30 PM Ticket #2077 (wrong result from specifying palette with value,color pairs) closed by
- fixed: Fixed. Palette values were being ignored because the way default …
- 4:09 PM Ticket #2122 ("volume zone" can create duplicate model IDs) closed by
- fixed: Fixed. Now issues an error message "Tried to create model #6 which …
- 1:52 PM Ticket #2122 ("volume zone" can create duplicate model IDs) created by
- […]
- 12:13 PM Ticket #2121 (Startup warning about Qt::AA_ShareOpenGLContexts) created by
- ChimeraX on Mac is giving a startup warning Attribute …
- 11:02 AM Ticket #649 (bundle specification of open/save arg UI) closed by
- duplicate: Now a duplicate of #2079
- 11:00 AM Ticket #183 (Make pseudobonds end on cartoons) closed by
- fixed: No complaints yet.
- 8:25 AM Ticket #2120 ('view' command: 'Objects' object is not iterable) created by
- […]
- 6:01 AM Ticket #2119 (Surface capping not working) created by
- […]
- 5:36 AM Ticket #2118 (Color zone sharp: Cut fraction is out of range) created by
- […] colorzone.tar.gz
- 5:11 AM Ticket #2117 (map stopped updating) created by
- […]
- 5:04 AM Ticket #2116 (Adjust surface geometry: not enough values to unpack) created by
- […]
- 3:18 AM Ticket #2115 (Erratic shell tab completion) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
