Opened 6 years ago
Closed 6 years ago
#2120 closed defect (fixed)
'view' command: 'Objects' object is not iterable
| Reported by: | Owned by: | Conrad Huang | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | General Controls | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-3.10.0-957.12.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core
ChimeraX Version: 0.91 (2019-06-25)
Description
Looks like the view command is broken.
Log:
UCSF ChimeraX version: 0.91 (2019-06-25)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /home/tic20/structure_dump/6j91/Refine_2/6j91_refine_2.pdb
Summary of feedback from opening
/home/tic20/structure_dump/6j91/Refine_2/6j91_refine_2.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Date 2019-06-21 Time 17:31:24 BST +0100 (1561134684.19 s)
Ignored bad PDB record found on line 2
REMARK PHENIX refinement
Ignored bad PDB record found on line 4
REMARK ****************** INPUT FILES AND LABELS
******************************
Ignored bad PDB record found on line 5
REMARK Reflections:
Ignored bad PDB record found on line 6
REMARK file name : /home/tic20/structure_dump/6j91/6j91.mtz
50 messages similar to the above omitted
Chain information for 6j91_refine_2.pdb #1
---
Chain | Description
A | No description available
B | No description available
> view #1
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute
cmd.run(cmd_text)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run
result = ci.function(session, **kw_args)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 53, in view
undo = UndoView("view", session, models)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 509, in __init__
self._before = NamedView(v, v.center_of_rotation, models)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
TypeError: 'Objects' object is not iterable
TypeError: 'Objects' object is not iterable
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 415.27
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (3)
comment:1 by , 6 years ago
| Component: | Unassigned → General Controls |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → 'view' command: 'Objects' object is not iterable |
comment:2 by , 6 years ago
| Owner: | changed from to |
|---|
comment:3 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Fixed in bf9fe95e2.
Undo code got too clever and tried to save only models that will be affected. And got it wrong.
Note:
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Some undo code was added a couple days ago that breaks the view command.