![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#2142 closed defect (duplicate)
Atom name > 4 characters
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.6.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-06-28)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [46499]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [46499]
User ID: 1574452387
Date/Time: 2019-06-29 19:11:14.610 +0100
OS Version: Mac OS X 10.14.5 (18F132)
Report Version: 12
Bridge OS Version: 3.0 (14Y901)
Anonymous UUID: B8F22D49-9671-CB90-FDDE-D01E7D515AFA
Sleep/Wake UUID: 0BE2CA65-106D-4BCA-8864-F0710B8F3F7D
Time Awake Since Boot: 44000 seconds
Time Since Wake: 24000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
terminating with uncaught exception of type std::invalid_argument: Atom Name "H3110" too long, maximum 4 characters.
abort() called
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5fde92c6 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5fea4bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5fd06d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5fe99b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff5fd536a6 abort + 127
6 libc++abi.dylib 0x00007fff5cf2f641 abort_message + 231
7 libc++abi.dylib 0x00007fff5cf2f7c7 default_terminate_handler() + 243
8 libobjc.A.dylib 0x00007fff5e4e2eeb _objc_terminate() + 105
9 libc++abi.dylib 0x00007fff5cf3b19e std::__terminate(void (*)()) + 8
10 libc++abi.dylib 0x00007fff5cf3af86 __cxxabiv1::failed_throw(__cxxabiv1::__cxa_exception*) + 27
11 libc++abi.dylib 0x00007fff5cf2df99 __cxa_throw + 113
12 cymol.so 0x0000000125c31b4c chutil::CString::_report_error(std::__1::basic_string, std::__1::allocator > const&) + 668
13 cymol.so 0x0000000125c3185b chutil::CString::operator=(char const*) + 171
14 cymol.so 0x0000000125c376dc __pyx_pw_8chimerax_6atomic_5cymol_9CyResidue_19find_atom(_object*, _object*) + 316
15 org.python.python 0x000000010a9965ce _PyMethodDef_RawFastCallKeywords + 798
16 org.python.python 0x000000010a99593c _PyCFunction_FastCallKeywords + 44
17 org.python.python 0x000000010aa5f209 call_function + 617
18 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
19 org.python.python 0x000000010a995df3 function_code_fastcall + 195
20 org.python.python 0x000000010aa5f271 call_function + 721
21 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
22 org.python.python 0x000000010a995df3 function_code_fastcall + 195
23 org.python.python 0x000000010aa5f271 call_function + 721
24 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
25 org.python.python 0x000000010a995df3 function_code_fastcall + 195
26 org.python.python 0x000000010aa5f271 call_function + 721
27 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
28 org.python.python 0x000000010a995df3 function_code_fastcall + 195
29 org.python.python 0x000000010aa5f271 call_function + 721
30 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
31 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
32 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
33 org.python.python 0x000000010aa5f271 call_function + 721
34 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
35 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
36 org.python.python 0x000000010a9953d2 _PyFunction_FastCallDict + 450
37 org.python.python 0x000000010aa57c45 _PyEval_EvalFrameDefault + 6437
38 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
39 org.python.python 0x000000010a9953d2 _PyFunction_FastCallDict + 450
40 org.python.python 0x000000010aa57c45 _PyEval_EvalFrameDefault + 6437
41 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
42 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
43 org.python.python 0x000000010aa5f271 call_function + 721
44 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
45 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
46 org.python.python 0x000000010a9953d2 _PyFunction_FastCallDict + 450
47 org.python.python 0x000000010a996886 _PyObject_Call_Prepend + 150
48 org.python.python 0x000000010a995a58 PyObject_Call + 136
49 QtCore.so 0x00000001186cef17 PyQtSlot::call(_object*, _object*) const + 39
50 QtCore.so 0x00000001186cee26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
51 QtCore.so 0x00000001186cf925 PyQtSlotProxy::unislot(void**) + 85
52 QtCore.so 0x00000001186cf89a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
53 QtCore 0x00000001181b74ed QMetaObject::activate(QObject*, int, int, void**) + 1773
54 QtCore 0x00000001181b7a3c QMetaObject::activate(QObject*, int, int, void**) + 3132
55 QtWidgets 0x0000000117608cd7 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 551
56 QtWidgets 0x00000001175ff992 QLineEdit::keyPressEvent(QKeyEvent*) + 34
57 QtWidgets 0x00000001174fa9ef QWidget::event(QEvent*) + 527
58 QtWidgets 0x00000001175fecf7 QLineEdit::event(QEvent*) + 727
59 QtWidgets 0x00000001175c3940 QComboBox::keyPressEvent(QKeyEvent*) + 784
60 QtWidgets.so 0x000000011716f23b meth_QComboBox_keyPressEvent(_object*, _object*) + 139
61 org.python.python 0x000000010a9963ab _PyMethodDef_RawFastCallKeywords + 251
62 org.python.python 0x000000010a99593c _PyCFunction_FastCallKeywords + 44
63 org.python.python 0x000000010aa5f209 call_function + 617
64 org.python.python 0x000000010aa578da _PyEval_EvalFrameDefault + 5562
65 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
66 org.python.python 0x000000010a9953d2 _PyFunction_FastCallDict + 450
67 org.python.python 0x000000010a996886 _PyObject_Call_Prepend + 150
68 org.python.python 0x000000010a995a58 PyObject_Call + 136
69 sip.so 0x0000000118594f6e call_method + 76
70 sip.so 0x0000000118590d6b sip_api_call_procedure_method + 152
71 QtWidgets.so 0x00000001170729a7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
72 QtWidgets 0x00000001174fa9ef QWidget::event(QEvent*) + 527
73 QtWidgets 0x00000001175c32a4 QComboBox::event(QEvent*) + 372
74 QtWidgets.so 0x0000000117071eb0 sipQComboBox::event(QEvent*) + 192
75 QtWidgets 0x00000001174bec3d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
76 QtWidgets 0x00000001174c018c QApplication::notify(QObject*, QEvent*) + 924
77 QtWidgets.so 0x000000011708d3ca sipQApplication::notify(QObject*, QEvent*) + 234
78 QtCore 0x00000001181866e4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
79 QtWidgets 0x0000000117519751 0x1174ae000 + 440145
80 QtWidgets 0x0000000117518b31 0x1174ae000 + 437041
81 QtWidgets 0x00000001174bec3d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
82 QtWidgets 0x00000001174c0042 QApplication::notify(QObject*, QEvent*) + 594
83 QtWidgets.so 0x000000011708d3ca sipQApplication::notify(QObject*, QEvent*) + 234
84 QtCore 0x00000001181866e4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
85 QtGui 0x0000000117a836b8 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 152
86 QtGui 0x0000000117a6a50b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
87 QtGui 0x0000000117a65565 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581
88 libqcocoa.dylib 0x0000000121e20cf8 0x121df3000 + 187640
89 libqcocoa.dylib 0x0000000121e20ec8 0x121df3000 + 188104
90 com.apple.AppKit 0x00007fff31572567 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 6840
91 com.apple.AppKit 0x00007fff31570867 -[NSWindow(NSEventRouting) sendEvent:] + 478
92 libqcocoa.dylib 0x0000000121e242d5 0x121df3000 + 201429
93 com.apple.AppKit 0x00007fff31410a8d -[NSApplication(NSEvent) sendEvent:] + 2953
94 libqcocoa.dylib 0x0000000121e2b29a 0x121df3000 + 230042
95 com.apple.AppKit 0x00007fff313fe874 -[NSApplication run] + 755
96 libqcocoa.dylib 0x0000000121e27b7b 0x121df3000 + 215931
97 QtCore 0x0000000118181cff QEventLoop::exec(QFlags) + 431
98 QtCore 0x0000000118186cf2 QCoreApplication::exec() + 130
99 QtWidgets.so 0x000000011717c7d2 meth_QApplication_exec_(_object*, _object*) + 82
100 org.python.python 0x000000010a9963ab _PyMethodDef_RawFastCallKeywords + 251
101 org.python.python 0x000000010a99593c _PyCFunction_FastCallKeywords + 44
102 org.python.python 0x000000010aa5f209 call_function + 617
103 org.python.python 0x000000010aa578da _PyEval_EvalFrameDefault + 5562
104 org.python.python 0x000000010a995df3 function_code_fastcall + 195
105 org.python.python 0x000000010aa5f271 call_function + 721
106 org.python.python 0x000000010aa578da _PyEval_EvalFrameDefault + 5562
107 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
108 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
109 org.python.python 0x000000010aa5f271 call_function + 721
110 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
111 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
112 org.python.python 0x000000010aa56280 PyEval_EvalCode + 48
113 org.python.python 0x000000010aa539c3 builtin_exec + 563
114 org.python.python 0x000000010a99655e _PyMethodDef_RawFastCallKeywords + 686
115 org.python.python 0x000000010a99593c _PyCFunction_FastCallKeywords + 44
116 org.python.python 0x000000010aa5f209 call_function + 617
117 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
118 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
119 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
120 org.python.python 0x000000010aa5f271 call_function + 721
121 org.python.python 0x000000010aa5796b _PyEval_EvalFrameDefault + 5707
122 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
123 org.python.python 0x000000010a9953d2 _PyFunction_FastCallDict + 450
124 org.python.python 0x000000010aab44c3 pymain_run_module + 147
125 org.python.python 0x000000010aab32d6 pymain_main + 4262
126 org.python.python 0x000000010aab2223 Py_Main + 51
127 edu.ucsf.cgl.ChimeraX 0x000000010a969e01 main + 593
128 libdyld.dylib 0x00007fff5fcae3d5 start + 1
Thread 1:
0 libsystem_pthread.dylib 0x00007fff5fea13f0 start_wqthread + 0
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff33d80bee __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff33d8015c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff33d7f8be CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff3140d6a6 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb270dd 0x1199ca000 + 34984157
5 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x000000011be34a19 0x1199ca000 + 38185497
2 QtWebEngineCore 0x000000011be31d2d 0x1199ca000 + 38173997
3 QtWebEngineCore 0x000000011bbe8d4c 0x1199ca000 + 35777868
4 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
5 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
6 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x000000011be34a19 0x1199ca000 + 38185497
2 QtWebEngineCore 0x000000011be31d2d 0x1199ca000 + 38173997
3 QtWebEngineCore 0x000000011bbe8d34 0x1199ca000 + 35777844
4 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
5 QtWebEngineCore 0x000000011bb91af4 0x1199ca000 + 35420916
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 8:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b43f 0x1199ca000 + 35394623
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b2b4 0x1199ca000 + 35394228
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b43f 0x1199ca000 + 35394623
6 QtWebEngineCore 0x000000011bb8b2b4 0x1199ca000 + 35394228
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x000000011be34a19 0x1199ca000 + 38185497
2 QtWebEngineCore 0x000000011be31d2d 0x1199ca000 + 38173997
3 QtWebEngineCore 0x000000011bbe8d34 0x1199ca000 + 35777844
4 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
5 QtWebEngineCore 0x000000011b4b6194 0x1199ca000 + 28230036
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb8ad9a 0x1199ca000 + 35392922
5 QtWebEngineCore 0x000000011bb8b43f 0x1199ca000 + 35394623
6 QtWebEngineCore 0x000000011bb8b2e4 0x1199ca000 + 35394276
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 14:: CompositorTileWorker1/71171
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 QtWebEngineCore 0x000000011bbe1018 0x1199ca000 + 35745816
3 QtWebEngineCore 0x000000011cb69638 0x1199ca000 + 52033080
4 QtWebEngineCore 0x000000011bba1714 0x1199ca000 + 35485460
5 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb270dd 0x1199ca000 + 34984157
5 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb270dd 0x1199ca000 + 34984157
5 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 17:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb270d2 0x1199ca000 + 34984146
4 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
5 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
6 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x000000011be34a19 0x1199ca000 + 38185497
2 QtWebEngineCore 0x000000011be31d2d 0x1199ca000 + 38173997
3 QtWebEngineCore 0x000000011bbe8d4c 0x1199ca000 + 35777868
4 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
5 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
6 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb8ad9a 0x1199ca000 + 35392922
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b3a4 0x1199ca000 + 35394468
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 20:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 QtCore 0x0000000117fc7d6b 0x117f9d000 + 175467
3 QtCore 0x0000000117fc7ccc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x00000001176e9752 0x1174ae000 + 2340690
5 QtCore 0x0000000117fbf573 0x117f9d000 + 140659
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb732af 0x1199ca000 + 35295919
4 QtWebEngineCore 0x000000011bb270dd 0x1199ca000 + 34984157
5 QtWebEngineCore 0x000000011bb50105 0x1199ca000 + 35152133
6 QtWebEngineCore 0x000000011bba2a3c 0x1199ca000 + 35490364
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 22:
0 libsystem_pthread.dylib 0x00007fff5fea13f0 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff5fea13f0 start_wqthread + 0
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b6db 0x1199ca000 + 35395291
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 25:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x000000011bb733ad 0x1199ca000 + 35296173
3 QtWebEngineCore 0x000000011bb734a1 0x1199ca000 + 35296417
4 QtWebEngineCore 0x000000011bb8ada8 0x1199ca000 + 35392936
5 QtWebEngineCore 0x000000011bb8b43f 0x1199ca000 + 35394623
6 QtWebEngineCore 0x000000011bb8b344 0x1199ca000 + 35394372
7 QtWebEngineCore 0x000000011bbe2787 0x1199ca000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 26:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x000000010c1b5c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 27:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x000000010c1b5c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 28:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x000000010c1b5c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 29:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 org.python.python 0x000000010aa9fb06 PyThread_acquire_lock_timed + 390
3 org.python.python 0x000000010aae71e6 acquire_timed + 134
4 org.python.python 0x000000010aae6f6c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010a99659a _PyMethodDef_RawFastCallKeywords + 746
6 org.python.python 0x000000010a99c052 _PyMethodDescr_FastCallKeywords + 82
7 org.python.python 0x000000010aa5f29b call_function + 763
8 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
9 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
10 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
11 org.python.python 0x000000010aa5f271 call_function + 721
12 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
13 org.python.python 0x000000010aa5fe81 _PyEval_EvalCodeWithName + 2721
14 org.python.python 0x000000010a9958f6 _PyFunction_FastCallKeywords + 230
15 org.python.python 0x000000010aa5f271 call_function + 721
16 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
17 org.python.python 0x000000010a995df3 function_code_fastcall + 195
18 org.python.python 0x000000010aa5f271 call_function + 721
19 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
20 org.python.python 0x000000010a995df3 function_code_fastcall + 195
21 org.python.python 0x000000010aa5f271 call_function + 721
22 org.python.python 0x000000010aa578c0 _PyEval_EvalFrameDefault + 5536
23 org.python.python 0x000000010a995df3 function_code_fastcall + 195
24 org.python.python 0x000000010a996886 _PyObject_Call_Prepend + 150
25 org.python.python 0x000000010a995a58 PyObject_Call + 136
26 org.python.python 0x000000010aae7ac7 t_bootstrap + 71
27 org.python.python 0x000000010aa9f749 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
29 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
30 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001199a15c0 rcx: 0x000000010ade0a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x000000010ade0a80 rsp: 0x000000010ade0a48
r8: 0x000000010ade0f48 r9: 0x4b2b08dd9aaed058 r10: 0x00000001199a166c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff5fde92c6 rfl: 0x0000000000000206 cr2: 0x000000010abbe25c
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff3f602000 - 0x7fff3f632ffb com.apple.securityinterface (10.0 - 55109.200.8) /System/Library/Frameworks/SecurityInterface.framework/Versions/A/SecurityInterface
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0x7fff43d71000 - 0x7fff43d9dff7 com.apple.framework.Apple80211 (13.0 - 1380.2) /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
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0x7fff5fd80000 - 0x7fff5fd83ffb libsystem_configuration.dylib (963.260.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff5fd84000 - 0x7fff5fd87ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5fd88000 - 0x7fff5fd8efff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff5fd8f000 - 0x7fff5fd95ff7 libsystem_dnssd.dylib (878.260.1) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5fd96000 - 0x7fff5fde1ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5fde2000 - 0x7fff5fe0aff7 libsystem_kernel.dylib (4903.261.4) /usr/lib/system/libsystem_kernel.dylib
0x7fff5fe0b000 - 0x7fff5fe56ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5fe57000 - 0x7fff5fe81fff libsystem_malloc.dylib (166.261.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5fe82000 - 0x7fff5fe8cff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5fe8d000 - 0x7fff5fe94fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5fe95000 - 0x7fff5fe9efef libsystem_platform.dylib (177.250.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5fe9f000 - 0x7fff5fea9ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5feaa000 - 0x7fff5feadff7 libsystem_sandbox.dylib (851.260.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5feae000 - 0x7fff5feb0ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5feb1000 - 0x7fff5feb8ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5feb9000 - 0x7fff5fecefff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib
0x7fff5fed0000 - 0x7fff5fed5ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5fed6000 - 0x7fff5ff05fff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 60525
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=721.1M resident=0K(0%) swapped_out_or_unallocated=721.1M(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 16.8M 6
CG image 56K 8
CoreAnimation 44K 7
CoreGraphics 8K 1
CoreImage 32K 4
CoreUI image data 1108K 16
CoreUI image file 528K 7
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 333.6M 135
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 116K 29
Stack 177.2M 30
Stack Guard 56.0M 1
VM_ALLOCATE 161.9M 170
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 83.9M 470
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 243.4M 127
__TEXT 477.8M 438
__UNICODE 564K 1
mapped file 89.1M 44
shared memory 652K 15
=========== ======= =======
TOTAL 2.0G 1534
TOTAL, minus reserved VM space 1.6G 1534
Log:
UCSF ChimeraX version: 0.91 (2019-06-28)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-2.9.26
OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Atom name > 4 characters |
comment:2 by , 6 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Duplicate of #2141