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Opened 6 years ago
Closed 6 years ago
#2163 closed defect (fixed)
Choosing box face: shapes not aligned
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Volume Data | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.17763
ChimeraX Version: 0.8 (2018-12-17)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
notes | Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\\\__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\\\__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
Updating list of available bundles failed: 'list' object has no attribute
'split'
UCSF ChimeraX version: 0.8 (2018-12-17)
How to cite UCSF ChimeraX
> open
C:\Users\Yee\MODEL_CHALLENGE\Model_challenge_06-25-2019_all_models_all_maps.cxs
opened ChimeraX session
> close session
> open "X:/YEAST NPC/mitocrop.mrc"
Opened mitocrop.mrc, grid size 106,289,174, pixel 27.8,27.8,27.8, shown at
level 2.28, step 1, values float32
> open "X:/YEAST NPC/mitocrop.mrc"
Opened mitocrop.mrc, grid size 106,289,174, pixel 27.8,27.8,27.8, shown at
level 2.28, step 1, values float32
> vr on
started SteamVR rendering
> vr off
> toolshed show "Marker Placement"
> show selAtoms
> show selAtoms ribbons
> vr on
started SteamVR rendering
> vr off
> close session
> open
X:/7-10-2019/TOXOPLASMA/tomo_VPP_toxop_def-1_MS_70e_29_bin2_byterevert_bin2.hdf
Opened tomo_VPP_toxop_def-1_MS_70e_29_bin2_byterevert_bin2.hdf, grid size
927,959,305, pixel 14.2, shown at step 1, values float32
> open X:/7-10-2019/TOXOPLASMA/toxo29-r-56.hdf
Opened toxo29-r-56.hdf, grid size 927,959,305, pixel 14.2, shown at step 1,
values float32
> vr on
> lighting simple
started SteamVR rendering
> open X:/7-10-2019/TOXOPLASMA/toxo29-r-56.hdf
Opened toxo29-r-56.hdf, grid size 927,959,305, pixel 14.2, shown at step 1,
values float32
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 436, in <lambda>
gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_down")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 437, in <lambda>
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 367, in
_dispatch_mouse_event
f(MouseEvent(event))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 52, in mouse_drag
self.mouse_down(event)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 37, in mouse_down
self._choose_box_face(line)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map\moveplanes.py", line 43, in _choose_box_face
v, self.axis, self.side, self.ijk = nearest_volume_face(line, maps)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 174, in nearest_volume_face
ijk, axis, side = face_intercept(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 198, in face_intercept
ijk_in, ijk_out = volume_index_segment(v, line)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 288, in volume_index_segment
volume.ijk_bounds(), clipping_model)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\slice.py",
line 24, in box_intercepts
bline = line_to_box_transform * line
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\place.py", line 120, in __mul__
return m34.apply_matrix(self._matrix, p)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
ValueError: shapes (2,) and (3,3) not aligned: 2 (dim 0) != 3 (dim 0)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\geometry\matrix.py", line 22, in apply_matrix
r = matrix_multiply(points, transpose(tf[:, :3]))
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 430.64
OpenGL renderer: GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Volume Data |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Choosing box face: shapes not aligned |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
Using mouse in move planes mode raised this error when in VR mode because VR camera does not cast rays and code assumed camera could cast rays.