![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#2141 closed defect (fixed)
Atom name > 4 characters
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Tristan Croll | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.6.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-06-28)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [46469]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [46469]
User ID: 1574452387
Date/Time: 2019-06-29 19:10:17.032 +0100
OS Version: Mac OS X 10.14.5 (18F132)
Report Version: 12
Bridge OS Version: 3.0 (14Y901)
Anonymous UUID: B8F22D49-9671-CB90-FDDE-D01E7D515AFA
Sleep/Wake UUID: 0BE2CA65-106D-4BCA-8864-F0710B8F3F7D
Time Awake Since Boot: 44000 seconds
Time Since Wake: 24000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
terminating with uncaught exception of type std::invalid_argument: Atom Name "H3110" too long, maximum 4 characters.
abort() called
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5fde92c6 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5fea4bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5fd06d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5fe99b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff5fd536a6 abort + 127
6 libc++abi.dylib 0x00007fff5cf2f641 abort_message + 231
7 libc++abi.dylib 0x00007fff5cf2f7c7 default_terminate_handler() + 243
8 libobjc.A.dylib 0x00007fff5e4e2eeb _objc_terminate() + 105
9 libc++abi.dylib 0x00007fff5cf3b19e std::__terminate(void (*)()) + 8
10 libc++abi.dylib 0x00007fff5cf3af86 __cxxabiv1::failed_throw(__cxxabiv1::__cxa_exception*) + 27
11 libc++abi.dylib 0x00007fff5cf2df99 __cxa_throw + 113
12 cymol.so 0x000000012240bb4c chutil::CString::_report_error(std::__1::basic_string, std::__1::allocator > const&) + 668
13 cymol.so 0x000000012240b85b chutil::CString::operator=(char const*) + 171
14 cymol.so 0x00000001224116dc __pyx_pw_8chimerax_6atomic_5cymol_9CyResidue_19find_atom(_object*, _object*) + 316
15 org.python.python 0x00000001071645ce _PyMethodDef_RawFastCallKeywords + 798
16 org.python.python 0x000000010716393c _PyCFunction_FastCallKeywords + 44
17 org.python.python 0x000000010722d209 call_function + 617
18 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
19 org.python.python 0x0000000107163df3 function_code_fastcall + 195
20 org.python.python 0x000000010722d271 call_function + 721
21 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
22 org.python.python 0x0000000107163df3 function_code_fastcall + 195
23 org.python.python 0x000000010722d271 call_function + 721
24 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
25 org.python.python 0x0000000107163df3 function_code_fastcall + 195
26 org.python.python 0x000000010722d271 call_function + 721
27 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
28 org.python.python 0x0000000107163df3 function_code_fastcall + 195
29 org.python.python 0x000000010722d271 call_function + 721
30 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
31 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
32 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
33 org.python.python 0x000000010722d271 call_function + 721
34 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
35 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
36 org.python.python 0x00000001071633d2 _PyFunction_FastCallDict + 450
37 org.python.python 0x0000000107225c45 _PyEval_EvalFrameDefault + 6437
38 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
39 org.python.python 0x00000001071633d2 _PyFunction_FastCallDict + 450
40 org.python.python 0x0000000107225c45 _PyEval_EvalFrameDefault + 6437
41 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
42 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
43 org.python.python 0x000000010722d271 call_function + 721
44 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
45 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
46 org.python.python 0x00000001071633d2 _PyFunction_FastCallDict + 450
47 org.python.python 0x0000000107164886 _PyObject_Call_Prepend + 150
48 org.python.python 0x0000000107163a58 PyObject_Call + 136
49 QtCore.so 0x0000000114f6ff17 PyQtSlot::call(_object*, _object*) const + 39
50 QtCore.so 0x0000000114f6fe26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
51 QtCore.so 0x0000000114f70925 PyQtSlotProxy::unislot(void**) + 85
52 QtCore.so 0x0000000114f7089a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
53 QtCore 0x0000000114a584ed QMetaObject::activate(QObject*, int, int, void**) + 1773
54 QtCore 0x0000000114a58a3c QMetaObject::activate(QObject*, int, int, void**) + 3132
55 QtWidgets 0x0000000113ea9cd7 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 551
56 QtWidgets 0x0000000113ea0992 QLineEdit::keyPressEvent(QKeyEvent*) + 34
57 QtWidgets 0x0000000113d9b9ef QWidget::event(QEvent*) + 527
58 QtWidgets 0x0000000113e9fcf7 QLineEdit::event(QEvent*) + 727
59 QtWidgets 0x0000000113e64940 QComboBox::keyPressEvent(QKeyEvent*) + 784
60 QtWidgets.so 0x0000000113a1023b meth_QComboBox_keyPressEvent(_object*, _object*) + 139
61 org.python.python 0x00000001071643ab _PyMethodDef_RawFastCallKeywords + 251
62 org.python.python 0x000000010716393c _PyCFunction_FastCallKeywords + 44
63 org.python.python 0x000000010722d209 call_function + 617
64 org.python.python 0x00000001072258da _PyEval_EvalFrameDefault + 5562
65 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
66 org.python.python 0x00000001071633d2 _PyFunction_FastCallDict + 450
67 org.python.python 0x0000000107164886 _PyObject_Call_Prepend + 150
68 org.python.python 0x0000000107163a58 PyObject_Call + 136
69 sip.so 0x0000000114e35f6e call_method + 76
70 sip.so 0x0000000114e31d6b sip_api_call_procedure_method + 152
71 QtWidgets.so 0x00000001139139a7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
72 QtWidgets 0x0000000113d9b9ef QWidget::event(QEvent*) + 527
73 QtWidgets 0x0000000113e642a4 QComboBox::event(QEvent*) + 372
74 QtWidgets.so 0x0000000113912eb0 sipQComboBox::event(QEvent*) + 192
75 QtWidgets 0x0000000113d5fc3d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
76 QtWidgets 0x0000000113d6118c QApplication::notify(QObject*, QEvent*) + 924
77 QtWidgets.so 0x000000011392e3ca sipQApplication::notify(QObject*, QEvent*) + 234
78 QtCore 0x0000000114a276e4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
79 QtWidgets 0x0000000113dba751 0x113d4f000 + 440145
80 QtWidgets 0x0000000113db9b31 0x113d4f000 + 437041
81 QtWidgets 0x0000000113d5fc3d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
82 QtWidgets 0x0000000113d61042 QApplication::notify(QObject*, QEvent*) + 594
83 QtWidgets.so 0x000000011392e3ca sipQApplication::notify(QObject*, QEvent*) + 234
84 QtCore 0x0000000114a276e4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
85 QtGui 0x00000001143246b8 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 152
86 QtGui 0x000000011430b50b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
87 QtGui 0x0000000114306565 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581
88 libqcocoa.dylib 0x000000011e5c6cf8 0x11e599000 + 187640
89 libqcocoa.dylib 0x000000011e5c6ec8 0x11e599000 + 188104
90 com.apple.AppKit 0x00007fff31572567 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 6840
91 com.apple.AppKit 0x00007fff31570867 -[NSWindow(NSEventRouting) sendEvent:] + 478
92 libqcocoa.dylib 0x000000011e5ca2d5 0x11e599000 + 201429
93 com.apple.AppKit 0x00007fff31410a8d -[NSApplication(NSEvent) sendEvent:] + 2953
94 libqcocoa.dylib 0x000000011e5d129a 0x11e599000 + 230042
95 com.apple.AppKit 0x00007fff313fe874 -[NSApplication run] + 755
96 libqcocoa.dylib 0x000000011e5cdb7b 0x11e599000 + 215931
97 QtCore 0x0000000114a22cff QEventLoop::exec(QFlags) + 431
98 QtCore 0x0000000114a27cf2 QCoreApplication::exec() + 130
99 QtWidgets.so 0x0000000113a1d7d2 meth_QApplication_exec_(_object*, _object*) + 82
100 org.python.python 0x00000001071643ab _PyMethodDef_RawFastCallKeywords + 251
101 org.python.python 0x000000010716393c _PyCFunction_FastCallKeywords + 44
102 org.python.python 0x000000010722d209 call_function + 617
103 org.python.python 0x00000001072258da _PyEval_EvalFrameDefault + 5562
104 org.python.python 0x0000000107163df3 function_code_fastcall + 195
105 org.python.python 0x000000010722d271 call_function + 721
106 org.python.python 0x00000001072258da _PyEval_EvalFrameDefault + 5562
107 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
108 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
109 org.python.python 0x000000010722d271 call_function + 721
110 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
111 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
112 org.python.python 0x0000000107224280 PyEval_EvalCode + 48
113 org.python.python 0x00000001072219c3 builtin_exec + 563
114 org.python.python 0x000000010716455e _PyMethodDef_RawFastCallKeywords + 686
115 org.python.python 0x000000010716393c _PyCFunction_FastCallKeywords + 44
116 org.python.python 0x000000010722d209 call_function + 617
117 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
118 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
119 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
120 org.python.python 0x000000010722d271 call_function + 721
121 org.python.python 0x000000010722596b _PyEval_EvalFrameDefault + 5707
122 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
123 org.python.python 0x00000001071633d2 _PyFunction_FastCallDict + 450
124 org.python.python 0x00000001072824c3 pymain_run_module + 147
125 org.python.python 0x00000001072812d6 pymain_main + 4262
126 org.python.python 0x0000000107280223 Py_Main + 51
127 edu.ucsf.cgl.ChimeraX 0x000000010713de01 main + 593
128 libdyld.dylib 0x00007fff5fcae3d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x0000000108d6ec0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x0000000108d6ec0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dev.dylib 0x0000000108d6ec0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff33d80bee __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff33d8015c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff33d7f8be CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff3140d6a6 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x00000001177a20dd 0x115645000 + 34984157
5 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x0000000117aafa19 0x115645000 + 38185497
2 QtWebEngineCore 0x0000000117aacd2d 0x115645000 + 38173997
3 QtWebEngineCore 0x0000000117863d4c 0x115645000 + 35777868
4 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
5 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
6 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x0000000117aafa19 0x115645000 + 38185497
2 QtWebEngineCore 0x0000000117aacd2d 0x115645000 + 38173997
3 QtWebEngineCore 0x0000000117863d34 0x115645000 + 35777844
4 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
5 QtWebEngineCore 0x000000011780caf4 0x115645000 + 35420916
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x0000000117806344 0x115645000 + 35394372
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x0000000117806344 0x115645000 + 35394372
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 10:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x0000000117806344 0x115645000 + 35394372
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 11:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x00000001178062b4 0x115645000 + 35394228
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 12:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x00000001178062b4 0x115645000 + 35394228
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 13:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x0000000117aafa19 0x115645000 + 38185497
2 QtWebEngineCore 0x0000000117aacd2d 0x115645000 + 38173997
3 QtWebEngineCore 0x0000000117863d34 0x115645000 + 35777844
4 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
5 QtWebEngineCore 0x0000000117131194 0x115645000 + 28230036
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 14:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x0000000117805d9a 0x115645000 + 35392922
5 QtWebEngineCore 0x000000011780643f 0x115645000 + 35394623
6 QtWebEngineCore 0x00000001178062e4 0x115645000 + 35394276
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 15:: CompositorTileWorker1/59395
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 QtWebEngineCore 0x000000011785c018 0x115645000 + 35745816
3 QtWebEngineCore 0x00000001187e4638 0x115645000 + 52033080
4 QtWebEngineCore 0x000000011781c714 0x115645000 + 35485460
5 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 16:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x00000001177a20dd 0x115645000 + 34984157
5 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x00000001177a20dd 0x115645000 + 34984157
5 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 18:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177a20d2 0x115645000 + 34984146
4 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
5 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
6 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 19:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5fde978e kevent + 10
1 QtWebEngineCore 0x0000000117aafa19 0x115645000 + 38185497
2 QtWebEngineCore 0x0000000117aacd2d 0x115645000 + 38173997
3 QtWebEngineCore 0x0000000117863d4c 0x115645000 + 35777868
4 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
5 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
6 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
7 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 20:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x0000000117805d9a 0x115645000 + 35392922
5 QtWebEngineCore 0x00000001178066db 0x115645000 + 35395291
6 QtWebEngineCore 0x00000001178063a4 0x115645000 + 35394468
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 21:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 QtCore 0x0000000114868d6b 0x11483e000 + 175467
3 QtCore 0x0000000114868ccc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x0000000113f8a752 0x113d4f000 + 2340690
5 QtCore 0x0000000114860573 0x11483e000 + 140659
6 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee2af 0x115645000 + 35295919
4 QtWebEngineCore 0x00000001177a20dd 0x115645000 + 34984157
5 QtWebEngineCore 0x00000001177cb105 0x115645000 + 35152133
6 QtWebEngineCore 0x000000011781da3c 0x115645000 + 35490364
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 23:
0 libsystem_pthread.dylib 0x00007fff5fea13f0 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff5fea13f0 start_wqthread + 0
Thread 25:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5fde322a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5fde376c mach_msg + 60
2 QtWebEngineCore 0x00000001177ee3ad 0x115645000 + 35296173
3 QtWebEngineCore 0x00000001177ee4a1 0x115645000 + 35296417
4 QtWebEngineCore 0x0000000117805da8 0x115645000 + 35392936
5 QtWebEngineCore 0x000000011780643f 0x115645000 + 35394623
6 QtWebEngineCore 0x0000000117806344 0x115645000 + 35394372
7 QtWebEngineCore 0x000000011785d787 0x115645000 + 35751815
8 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 26:
0 libsystem_kernel.dylib 0x00007fff5fde686a __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5fea556e _pthread_cond_wait + 722
2 org.python.python 0x000000010726db06 PyThread_acquire_lock_timed + 390
3 org.python.python 0x00000001072b51e6 acquire_timed + 134
4 org.python.python 0x00000001072b4f6c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010716459a _PyMethodDef_RawFastCallKeywords + 746
6 org.python.python 0x000000010716a052 _PyMethodDescr_FastCallKeywords + 82
7 org.python.python 0x000000010722d29b call_function + 763
8 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
9 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
10 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
11 org.python.python 0x000000010722d271 call_function + 721
12 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
13 org.python.python 0x000000010722de81 _PyEval_EvalCodeWithName + 2721
14 org.python.python 0x00000001071638f6 _PyFunction_FastCallKeywords + 230
15 org.python.python 0x000000010722d271 call_function + 721
16 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
17 org.python.python 0x0000000107163df3 function_code_fastcall + 195
18 org.python.python 0x000000010722d271 call_function + 721
19 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
20 org.python.python 0x0000000107163df3 function_code_fastcall + 195
21 org.python.python 0x000000010722d271 call_function + 721
22 org.python.python 0x00000001072258c0 _PyEval_EvalFrameDefault + 5536
23 org.python.python 0x0000000107163df3 function_code_fastcall + 195
24 org.python.python 0x0000000107164886 _PyObject_Call_Prepend + 150
25 org.python.python 0x0000000107163a58 PyObject_Call + 136
26 org.python.python 0x00000001072b5ac7 t_bootstrap + 71
27 org.python.python 0x000000010726d749 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff5fea22eb _pthread_body + 126
29 libsystem_pthread.dylib 0x00007fff5fea5249 _pthread_start + 66
30 libsystem_pthread.dylib 0x00007fff5fea140d thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000108a0f5c0 rcx: 0x00000001075b3a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00000001075b3a80 rsp: 0x00000001075b3a48
r8: 0x00000001075b3f48 r9: 0x339ea391832d061a r10: 0x0000000108a0f66c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff5fde92c6 rfl: 0x0000000000000206 cr2: 0x000000010738c25c
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x107d62000 - 0x107d68ffb +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so
0x107d6d000 - 0x107d7dff7 +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so
0x107e03000 - 0x107e04ff7 +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so
0x107e48000 - 0x107e56ffb +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
0x107ea2000 - 0x107ea2ffb +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so
0x107ee5000 - 0x107f1dff3 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x107f3c000 - 0x107f67fff +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so
0x107f7a000 - 0x107f7bff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
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0x1082fb000 - 0x108544ff7 +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so
0x108653000 - 0x10876aff7 +libgfortran.3.dylib (0) /Applications/ChimeraX_Daily.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x1087ce000 - 0x108804fff +libquadmath.0.dylib (0) /Applications/ChimeraX_Daily.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x108813000 - 0x108828ff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib
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0x10896d000 - 0x1089d76ef dyld (655.1.1) /usr/lib/dyld
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0x1127a7000 - 0x1127c0fff +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
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0x112baa000 - 0x112bcaff3 +_serialize.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_serialize.cpython-37m-darwin.so
0x112bdc000 - 0x112bf5ff3 +_cmsgpack.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/msgpack/_cmsgpack.cpython-37m-darwin.so
0x112c4a000 - 0x112c9dfff +_imaging.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/_imaging.cpython-37m-darwin.so
0x112cc4000 - 0x112d15ff3 +libjpeg.9.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libjpeg.9.dylib
0x112d1d000 - 0x112d5ffff +libopenjp2.2.1.0.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libopenjp2.2.1.0.dylib
0x112d69000 - 0x112d84ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libz.1.2.11.dylib
0x112d88000 - 0x112e14ff3 +libtiff.5.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/libtiff.5.dylib
0x112e26000 - 0x112e56fff +liblzma.5.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/.dylibs/liblzma.5.dylib
0x112e5e000 - 0x112e71ff7 +tinyarray.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/tinyarray.cpython-37m-darwin.so
0x112f4a000 - 0x112f51fff +errorchecker.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.3b1-py3.7-macosx-10.9-x86_64.egg/OpenGL_accelerate/errorchecker.cpython-37m-darwin.so
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0x7fff4879d000 - 0x7fff48800ff7 com.apple.framework.CoreWiFi (13.0 - 1375.2) /System/Library/PrivateFrameworks/CoreWiFi.framework/Versions/A/CoreWiFi
0x7fff48801000 - 0x7fff48812ff7 com.apple.CrashReporterSupport (10.13 - 938.25) /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
0x7fff488a2000 - 0x7fff488b1fff com.apple.framework.DFRFoundation (1.0 - 211.1) /System/Library/PrivateFrameworks/DFRFoundation.framework/Versions/A/DFRFoundation
0x7fff488b2000 - 0x7fff488b6fff com.apple.DSExternalDisplay (3.1 - 380) /System/Library/PrivateFrameworks/DSExternalDisplay.framework/Versions/A/DSExternalDisplay
0x7fff48937000 - 0x7fff489acff3 com.apple.datadetectorscore (7.0 - 590.24) /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
0x7fff489f8000 - 0x7fff48a35ff7 com.apple.DebugSymbols (190 - 190) /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
0x7fff48a36000 - 0x7fff48b71ff7 com.apple.desktopservices (1.13.5 - ???) /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x7fff48d7d000 - 0x7fff48e43fff com.apple.DiskManagement (12.1 - 1555) /System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/DiskManagement
0x7fff48e44000 - 0x7fff48e48ffb com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff48eef000 - 0x7fff48ef2ff3 com.apple.EFILogin (2.0 - 2) /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff49628000 - 0x7fff4990aff7 com.apple.vision.EspressoFramework (1.0 - 120) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff49aae000 - 0x7fff49ec9fff com.apple.vision.FaceCore (3.3.4 - 3.3.4) /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
0x7fff4d77d000 - 0x7fff4d77efff libmetal_timestamp.dylib (902.3.2) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/3902/Libraries/libmetal_timestamp.dylib
0x7fff4ee12000 - 0x7fff4ee1dff7 libGPUSupportMercury.dylib (17.7.2) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff4ee1e000 - 0x7fff4ee23fff com.apple.GPUWrangler (3.40.16 - 3.40.16) /System/Library/PrivateFrameworks/GPUWrangler.framework/Versions/A/GPUWrangler
0x7fff4f1b0000 - 0x7fff4f1d4ff3 com.apple.GenerationalStorage (2.0 - 285.101) /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
0x7fff4fc2e000 - 0x7fff4fc3dfff com.apple.GraphVisualizer (1.0 - 5) /System/Library/PrivateFrameworks/GraphVisualizer.framework/Versions/A/GraphVisualizer
0x7fff4fd8d000 - 0x7fff4fe01ffb com.apple.Heimdal (4.0 - 2.0) /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
0x7fff510e6000 - 0x7fff510effff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff510f0000 - 0x7fff510f7ffb com.apple.IOAccelerator (404.9 - 404.9) /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
0x7fff510fb000 - 0x7fff51113fff com.apple.IOPresentment (1.0 - 42.6) /System/Library/PrivateFrameworks/IOPresentment.framework/Versions/A/IOPresentment
0x7fff514bb000 - 0x7fff514e8ff7 com.apple.IconServices (379 - 379) /System/Library/PrivateFrameworks/IconServices.framework/Versions/A/IconServices
0x7fff51612000 - 0x7fff51616ffb com.apple.InternationalSupport (1.0 - 10.15.6) /System/Library/PrivateFrameworks/InternationalSupport.framework/Versions/A/InternationalSupport
0x7fff5177c000 - 0x7fff5178eff3 com.apple.security.KeychainCircle.KeychainCircle (1.0 - 1) /System/Library/PrivateFrameworks/KeychainCircle.framework/Versions/A/KeychainCircle
0x7fff517a9000 - 0x7fff51884ff7 com.apple.LanguageModeling (1.0 - 159.15.15) /System/Library/PrivateFrameworks/LanguageModeling.framework/Versions/A/LanguageModeling
0x7fff51885000 - 0x7fff518c1ff7 com.apple.Lexicon-framework (1.0 - 33.15.10) /System/Library/PrivateFrameworks/Lexicon.framework/Versions/A/Lexicon
0x7fff518c8000 - 0x7fff518cdfff com.apple.LinguisticData (1.0 - 238.25) /System/Library/PrivateFrameworks/LinguisticData.framework/Versions/A/LinguisticData
0x7fff520eb000 - 0x7fff520eefff com.apple.Mangrove (1.0 - 25) /System/Library/PrivateFrameworks/Mangrove.framework/Versions/A/Mangrove
0x7fff52175000 - 0x7fff5219bff3 com.apple.MarkupUI (1.0 - 232.3.30) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff52203000 - 0x7fff52236ff7 com.apple.MediaKit (16 - 906) /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff525c2000 - 0x7fff525eaff7 com.apple.spotlight.metadata.utilities (1.0 - 1191.57) /System/Library/PrivateFrameworks/MetadataUtilities.framework/Versions/A/MetadataUtilities
0x7fff525eb000 - 0x7fff52678ff7 com.apple.gpusw.MetalTools (1.0 - 1) /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools
0x7fff5268e000 - 0x7fff526a7ffb com.apple.MobileAssets (1.0 - 437.250.3) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset
0x7fff52825000 - 0x7fff52840ffb com.apple.MobileKeyBag (2.0 - 1.0) /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag
0x7fff52853000 - 0x7fff528c8fff com.apple.Montreal (1.0 - 42.15.9) /System/Library/PrivateFrameworks/Montreal.framework/Versions/A/Montreal
0x7fff528c9000 - 0x7fff528f3ffb com.apple.MultitouchSupport.framework (2450.1 - 2450.1) /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff52b2f000 - 0x7fff52b39fff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
0x7fff5339a000 - 0x7fff533ebff3 com.apple.OTSVG (1.0 - ???) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG
0x7fff5447c000 - 0x7fff5456ffff com.apple.PencilKit (1.0 - 1) /System/Library/PrivateFrameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff54570000 - 0x7fff5457fff7 com.apple.PerformanceAnalysis (1.218.2 - 218.2) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
0x7fff563ba000 - 0x7fff5640effb com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
0x7fff5640f000 - 0x7fff5642dff7 com.apple.ProtocolBuffer (1 - 263.2) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff565ab000 - 0x7fff565aeff3 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff565af000 - 0x7fff565c4ff3 com.apple.QuickLookThumbnailing (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff565c5000 - 0x7fff56615fff com.apple.ROCKit (27.6 - 27.6) /System/Library/PrivateFrameworks/ROCKit.framework/Versions/A/ROCKit
0x7fff5674a000 - 0x7fff56755fff com.apple.xpc.RemoteServiceDiscovery (1.0 - 1336.261.2) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff56768000 - 0x7fff5678afff com.apple.RemoteViewServices (2.0 - 128) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff5678b000 - 0x7fff5679eff3 com.apple.xpc.RemoteXPC (1.0 - 1336.261.2) /System/Library/PrivateFrameworks/RemoteXPC.framework/Versions/A/RemoteXPC
0x7fff57f8f000 - 0x7fff580adfff com.apple.Sharing (1288.43 - 1288.43) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff58ebe000 - 0x7fff5916cffb com.apple.SkyLight (1.600.0 - 340.26) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff5990e000 - 0x7fff5991afff com.apple.SpeechRecognitionCore (5.0.21 - 5.0.21) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff59fb9000 - 0x7fff59ff5ff3 com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff5a06b000 - 0x7fff5a0f6fc7 com.apple.Symbolication (10.2 - 64490.38.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff5a5cd000 - 0x7fff5a5d9ff7 com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff5a5de000 - 0x7fff5a5eaffb com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff5a850000 - 0x7fff5a918ff3 com.apple.TextureIO (3.8.4 - 3.8.1) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff5a9ce000 - 0x7fff5a9cffff com.apple.TrustEvaluationAgent (2.0 - 31.200.1) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff5a9d5000 - 0x7fff5ab8bff7 com.apple.UIFoundation (1.0 - 551) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff5b807000 - 0x7fff5b8e0fff com.apple.ViewBridge (401.1 - 401.1) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff5c0b7000 - 0x7fff5c0bafff com.apple.dt.XCTTargetBootstrap (1.0 - 14490.66) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff5c4bb000 - 0x7fff5c4bdffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff5c4be000 - 0x7fff5c4d3fff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff5c787000 - 0x7fff5c7bbfff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib
0x7fff5c7be000 - 0x7fff5c7c8ff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib
0x7fff5c7c9000 - 0x7fff5c852fff libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib
0x7fff5c856000 - 0x7fff5c857ffb libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff5c88e000 - 0x7fff5cae5ff3 libFosl_dynamic.dylib (18.3.4) /usr/lib/libFosl_dynamic.dylib
0x7fff5cb05000 - 0x7fff5cb0cfff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib
0x7fff5cb36000 - 0x7fff5cb54fff libMobileGestalt.dylib (645.260.6) /usr/lib/libMobileGestalt.dylib
0x7fff5cb55000 - 0x7fff5cb55fff libOpenScriptingUtil.dylib (179.1) /usr/lib/libOpenScriptingUtil.dylib
0x7fff5cc95000 - 0x7fff5cc96ffb libSystem.B.dylib (1252.250.1) /usr/lib/libSystem.B.dylib
0x7fff5cd12000 - 0x7fff5cd13fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib
0x7fff5cd25000 - 0x7fff5cd3bffb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib
0x7fff5cd3c000 - 0x7fff5cd65ffb libarchive.2.dylib (54.250.1) /usr/lib/libarchive.2.dylib
0x7fff5cd66000 - 0x7fff5cde5fff libate.dylib (1.13.8) /usr/lib/libate.dylib
0x7fff5cde9000 - 0x7fff5cde9ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff5ceb9000 - 0x7fff5cec9ffb libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib
0x7fff5ceca000 - 0x7fff5ced7fff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib
0x7fff5ced8000 - 0x7fff5cf2bff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib
0x7fff5cf2c000 - 0x7fff5cf41ff7 libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib
0x7fff5cf42000 - 0x7fff5cf42ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib
0x7fff5cf43000 - 0x7fff5cf53ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib
0x7fff5cf54000 - 0x7fff5cf6cffb libcompression.dylib (52.250.2) /usr/lib/libcompression.dylib
0x7fff5d1e1000 - 0x7fff5d1f7fff libcoretls.dylib (155.220.1) /usr/lib/libcoretls.dylib
0x7fff5d1f8000 - 0x7fff5d1f9ff3 libcoretls_cfhelpers.dylib (155.220.1) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff5d397000 - 0x7fff5d48fff7 libcrypto.35.dylib (22.260.1) /usr/lib/libcrypto.35.dylib
0x7fff5d692000 - 0x7fff5d69dff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib
0x7fff5d6a5000 - 0x7fff5d6fbff7 libcups.2.dylib (462.10) /usr/lib/libcups.2.dylib
0x7fff5d82f000 - 0x7fff5d82ffff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib
0x7fff5d830000 - 0x7fff5d849ffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib
0x7fff5d861000 - 0x7fff5d866ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff5d867000 - 0x7fff5d86cff7 libheimdal-asn1.dylib (520.260.1) /usr/lib/libheimdal-asn1.dylib
0x7fff5d897000 - 0x7fff5d987fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff5d988000 - 0x7fff5dbe9fff libicucore.A.dylib (62135.0.1) /usr/lib/libicucore.A.dylib
0x7fff5dc36000 - 0x7fff5dc37fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff5dc38000 - 0x7fff5dc50ff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff5dc68000 - 0x7fff5dd0cff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff5dd0d000 - 0x7fff5df11fff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff5e0e9000 - 0x7fff5e43aff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib
0x7fff5e4cc000 - 0x7fff5ec51fdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib
0x7fff5ec63000 - 0x7fff5ec67ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff5ec6a000 - 0x7fff5ec9ffff libpcap.A.dylib (79.250.1) /usr/lib/libpcap.A.dylib
0x7fff5edb8000 - 0x7fff5edd0ffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib
0x7fff5edd2000 - 0x7fff5ee0dff3 libsandbox.1.dylib (851.260.2) /usr/lib/libsandbox.1.dylib
0x7fff5ee21000 - 0x7fff5ee22ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff5ee23000 - 0x7fff5f000fe7 libsqlite3.dylib (274.25) /usr/lib/libsqlite3.dylib
0x7fff5f219000 - 0x7fff5f21cff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff5f21d000 - 0x7fff5f22afff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff5f22f000 - 0x7fff5f311ff3 libxml2.2.dylib (32.8) /usr/lib/libxml2.2.dylib
0x7fff5f312000 - 0x7fff5f33aff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib
0x7fff5f33b000 - 0x7fff5f34dff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff5fb31000 - 0x7fff5fb35ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff5fb36000 - 0x7fff5fb40ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff5fb41000 - 0x7fff5fb48ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff5fb49000 - 0x7fff5fb52ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff5fb53000 - 0x7fff5fbd7fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib
0x7fff5fc5e000 - 0x7fff5fc97ff7 libdispatch.dylib (1008.250.7) /usr/lib/system/libdispatch.dylib
0x7fff5fc98000 - 0x7fff5fcc4ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff5fcc5000 - 0x7fff5fcc5ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff5fcc6000 - 0x7fff5fcd2ff3 libkxld.dylib (4903.261.4) /usr/lib/system/libkxld.dylib
0x7fff5fcd3000 - 0x7fff5fcd3ff7 liblaunch.dylib (1336.261.2) /usr/lib/system/liblaunch.dylib
0x7fff5fcd4000 - 0x7fff5fcd9fff libmacho.dylib (927.0.2) /usr/lib/system/libmacho.dylib
0x7fff5fcda000 - 0x7fff5fcdcffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib
0x7fff5fcdd000 - 0x7fff5fcdeff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5fcdf000 - 0x7fff5fcf6ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5fcf7000 - 0x7fff5fcf7ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5fcf8000 - 0x7fff5fd7ffff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
0x7fff5fd80000 - 0x7fff5fd83ffb libsystem_configuration.dylib (963.260.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff5fd84000 - 0x7fff5fd87ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5fd88000 - 0x7fff5fd8efff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff5fd8f000 - 0x7fff5fd95ff7 libsystem_dnssd.dylib (878.260.1) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5fd96000 - 0x7fff5fde1ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5fde2000 - 0x7fff5fe0aff7 libsystem_kernel.dylib (4903.261.4) /usr/lib/system/libsystem_kernel.dylib
0x7fff5fe0b000 - 0x7fff5fe56ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5fe57000 - 0x7fff5fe81fff libsystem_malloc.dylib (166.261.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5fe82000 - 0x7fff5fe8cff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5fe8d000 - 0x7fff5fe94fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5fe95000 - 0x7fff5fe9efef libsystem_platform.dylib (177.250.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5fe9f000 - 0x7fff5fea9ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5feaa000 - 0x7fff5feadff7 libsystem_sandbox.dylib (851.260.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5feae000 - 0x7fff5feb0ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5feb1000 - 0x7fff5feb8ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5feb9000 - 0x7fff5fecefff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib
0x7fff5fed0000 - 0x7fff5fed5ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5fed6000 - 0x7fff5ff05fff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 60511
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=715.4M resident=0K(0%) swapped_out_or_unallocated=715.4M(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 16.8M 6
CG image 32K 4
CoreAnimation 36K 4
CoreGraphics 8K 1
CoreImage 32K 4
CoreUI image data 848K 13
CoreUI image file 528K 8
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 324.8M 127
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 104K 26
Stack 160.7M 27
Stack Guard 56.0M 1
VM_ALLOCATE 97.1M 161
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
__DATA 83.6M 466
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 242.0M 125
__TEXT 473.4M 436
__UNICODE 564K 1
mapped file 89.1M 44
shared memory 656K 17
=========== ======= =======
TOTAL 2.0G 1496
TOTAL, minus reserved VM space 1.5G 1496
Log:
UCSF ChimeraX version: 0.91 (2019-06-28)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-2.9.26
OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (8)
comment:1 by , 6 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Atom name > 4 characters |
comment:2 by , 6 years ago
| Status: | accepted → feedback |
|---|
follow-up: 3 comment:3 by , 6 years ago
Hi Eric,
Thanks for a prompt answer. I checked with my colleagues and we don’t impose any length restrictions on atom names That was a case when PDB format was still in use. Nevertheless wwPDB proceeds with PDB format discontinuation and from yesterday we don’t even accept it for diffraction experiments submission.
I checked that particular case and there is POV component with atom name H310, so not sure where H3110 would come from.
Best,
Lukas
On 01/07/2019, 18:43, "ChimeraX" <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
#2141: Atom name > 4 characters
-----------------------------------+----------------------
Reporter: lpravda@… | Owner: pett
Type: defect | Status: feedback
Priority: normal | Milestone:
Component: Input/Output | Version:
Resolution: | Keywords:
Blocked By: | Blocking:
Notify when closed: | Platform: all
Project: ChimeraX |
-----------------------------------+----------------------
Changes (by pett):
* status: accepted => feedback
Comment:
Hi Lukas,
Is the PDB now allowing atom names longer than 4 characters
(namely: H3110)?
--Eric
--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/2141#comment:2>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker
comment:4 by , 6 years ago
Hi Lukas,
Either the file has a 5-character atom name that you're overlooking somehow, or ChimeraX's mmCIF reader is mistakenly generating a 5-character name when it shouldn't. If you could provide the input file, that would help us sort that out.
--Eric
follow-up: 5 comment:5 by , 6 years ago
Hi Eric,
Sorry for the late response, but I was on my holiday. For the examples, just download 6o2p, or 6o1v
open 6o2p
add hbond true
causes ChimeraX to crash. There are 4-letter atom names for hydrogens in the component definition for POV, but nothing longer than that.
I hope this helps.
Best,
Lukas
On 02/07/2019, 22:29, "ChimeraX" <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
#2141: Atom name > 4 characters
-----------------------------------+----------------------
Reporter: lpravda@… | Owner: pett
Type: defect | Status: feedback
Priority: normal | Milestone:
Component: Input/Output | Version:
Resolution: | Keywords:
Blocked By: | Blocking:
Notify when closed: | Platform: all
Project: ChimeraX |
-----------------------------------+----------------------
Comment (by pett):
Hi Lukas,
Either the file has a 5-character atom name that you're
overlooking somehow, or ChimeraX's mmCIF reader is mistakenly generating a
5-character name when it shouldn't. If you could provide the input file,
that would help us sort that out.
--Eric
--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/2141#comment:4>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker
comment:6 by , 6 years ago
| Status: | feedback → accepted |
|---|
Ah, so the problem is "addh" generating 5-character atom names. I will look into that.
--Eric
comment:8 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Residue POV has 4-character heavy atom names (e.g. C310) and all of the naming schemes used by addh result in 5-character hydrogen names when the connecting heavy atom name is 4 characters, so implemented a "fallback" scheme for this case where the hydrogens are simply named H1, H2, etc.
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Hi Lukas,
--Eric