The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-06-27)
Description
zone specification broken in daily build
open a structure, select some atom, use command
view sel :<5.5
- or -
view sel @< 8
Log:
UCSF ChimeraX version: 0.91 (2019-06-27)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1zik format mmCIF fromDatabase pdb
1zik title:
GCN4-leucine zipper core mutant ASN16LYS In the dimeric state [more info...]
Chain information for 1zik #1
---
Chain | Description
A B | general control protein GCN4
> display
> select /A:17@OH
1 atom, 1 model selected
> view sel :<5.5
Traceback (most recent call last):
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute
cmd.run(cmd_text)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run
result = ci.function(session, **kw_args)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 53, in view
undo = UndoView("view", session, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 509, in __init__
self._before = NamedView(v, v.center_of_rotation, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
TypeError: 'Objects' object is not iterable
TypeError: 'Objects' object is not iterable
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
See log for complete Python traceback.
> view sel :< 5.5
Traceback (most recent call last):
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute
cmd.run(cmd_text)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run
result = ci.function(session, **kw_args)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 53, in view
undo = UndoView("view", session, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 509, in __init__
self._before = NamedView(v, v.center_of_rotation, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
TypeError: 'Objects' object is not iterable
TypeError: 'Objects' object is not iterable
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
See log for complete Python traceback.
> view sel @< 8
Traceback (most recent call last):
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute
cmd.run(cmd_text)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2641, in run
result = ci.function(session, **kw_args)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 53, in view
undo = UndoView("view", session, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 509, in __init__
self._before = NamedView(v, v.center_of_rotation, models)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
TypeError: 'Objects' object is not iterable
TypeError: 'Objects' object is not iterable
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/std_commands/view.py", line 184, in __init__
for m in models:
See log for complete Python traceback.
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation
the 0.9 release does not have this problem (phew)