![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 3 years ago
#2204 closed defect (fixed)
ISOLDE: ramaplot: wrapped C/C++ object of type QVBoxLayout has been deleted
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.6.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-06-06) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield before.pdb title: Crystal structure of etub from clostridium kluyveri [more info...] Chain information for before.pdb #1 --- Chain | Description A | predicted microcompartment protein before.pdb title: Crystal structure of etub from clostridium kluyveri [more info...] Chain information for before.pdb --- Chain | Description 1.3/A | predicted microcompartment protein WARNING: multiple experimental reflection datasets found: (dataset) FOBS, SIGFOBS, (dataset) IOBS, SIGIOBS, (dataset) DANO, SIGDANO, (dataset) F(+), SIGF(+), F(-), SIGF(-), (dataset) I(+), SIGI(+), I(-), SIGI(-) Automatically choosing "(dataset) IOBS, SIGIOBS". Reflection data provided as intensities. Performing French & Wilson scaling to convert to amplitudes... > set bgColor black > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield > view /A:187 > cofr centerOfView > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield QWidget::repaint: Recursive repaint detected > isolde sim start #1 > lighting simple > isolde sim start #1 No rotamer preview selected! Ignoring command. No rotamer preview selected! Ignoring command. > select clear > select #1.3/A:301@CE 1 atom, 1 model selected > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 273, in _model_changed_cb self.update_scatter() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 370, in update_scatter if not self.visible: File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 281, in visible return self.parent.isVisible() File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted Error processing trigger "changes": wrapped C/C++ object of type QVBoxLayout has been deleted: RuntimeError: wrapped C/C++ object of type QVBoxLayout has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/validation/ramaplot.py", line 277, in parent return self.container.parentWidget() See log for complete Python traceback. Traceback (most recent call last): File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) RuntimeError: wrapped C/C++ object of type QLabel has been deleted Error processing trigger "changes": wrapped C/C++ object of type QLabel has been deleted: RuntimeError: wrapped C/C++ object of type QLabel has been deleted File "/programs/i386-mac/chimerax/0.9/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/isolde/isolde.py", line 2180, in _update_selected_residue_info_live self.iw._rebuild_sel_res_pep_info.setText(pep_type) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.9.22 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc.
Change History (3)
comment:1 by , 6 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ISOLDE: ramaplot: wrapped C/C++ object of type QVBoxLayout has been deleted |
comment:2 by , 6 years ago
comment:3 by , 3 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
This looks to me like the ISOLDE panel was closed while a simulation was still running - not a scenario I've attempted to account for, I'm afraid. I'll look into it, but it won't be an immediate fix.