Timeline



Sep 11, 2020:

4:11 PM Ticket #3441 (somewhat unusual chain editing causes crash) closed by pett
fixed: When chain C got merged into chain A, the chain C object got "demoted" …
10:34 AM Ticket #3704 (ISOLDE/Atomic version conflict) closed by pett
not a bug: I think it's better to make the dependency on 1.6 instead of 1.6.0 …
9:16 AM Ticket #3707 (Crash rendering QtQuick scene graph from timer) closed by pett
can't reproduce
9:02 AM Ticket #3706 (Error opening PDBQT) closed by pett
fixed: Hi Andrew, Thanks for reporting this problem. It is fixed in the …
8:59 AM Ticket #3709 (Disabled ISOLDE menu) created by Tristan Croll
[…]
7:42 AM Ticket #3708 (EMDB initial contour level) created by Tristan Croll
[…]
7:14 AM Ticket #3707 (Crash rendering QtQuick scene graph from timer) created by chimerax-bug-report@…
[…]

Sep 10, 2020:

8:32 PM Ticket #3706 (Error opening PDBQT) created by andrew.guy@…
[…] new1_1.pdbqt
7:04 PM Ticket #3705 (Bundle builder opaque error message) created by chimerax-bug-report@…
[…]
4:28 PM Ticket #3694 (Crash adding then deleting residue) closed by pett
fixed: For the specific case of a residue being added into the …
2:54 PM Ticket #3703 ("toolshed install" documentation error) closed by Elaine Meng
fixed: fixed in develop branch
2:52 PM Ticket #3704 (ISOLDE/Atomic version conflict) created by pett
[…]
2:45 PM Ticket #3703 ("toolshed install" documentation error) created by pett
The syntax summary for "toolshed install" in its help page shows …
12:22 PM Ticket #3702 (make build-from-scratch fails) created by pett
cd /Users/pett/src/chimerax/build/sync && rm */*.whl rm: */*.whl: No …
10:40 AM Milestone 1.1 completed
== Update mechanism (critical) == * "Flatten" RBVI bundles

Sep 9, 2020:

6:08 PM Ticket #3701 (SortedDIct.iloc deprecated) closed by pett
fixed
4:23 PM Ticket #3701 (SortedDIct.iloc deprecated) created by goddard@…
[…]
4:02 PM Ticket #3700 (Tape measure: 'Structure' object has no attribute 'session') closed by Tom Goddard
duplicate: Duplicate of #3457, fixed a few months ago.
3:25 PM Ticket #3688 (Segger obsolete import) closed by Tom Goddard
fixed: Fixed. Segger tar balls on plato mistakenly contained wheel files and …
12:56 PM Ticket #3700 (Tape measure: 'Structure' object has no attribute 'session') created by chimerax-bug-report@…
[…]
10:59 AM ChangeLog edited by Elaine Meng
(diff)
5:46 AM Ticket #3699 (Starting simulation: clEnqueueNDRangeKernel (-4)) created by stefan.schmelz@…
[…]
4:18 AM Ticket #3698 (Libraries not found when generating bundle documentation) created by Tristan Croll
[…]

Sep 8, 2020:

7:16 PM Ticket #3697 (Replace non-standard Windows numpy and scipy packages with PyPi ones) created by Tom Goddard
For unclear reasons we are using custom compiled numpy and scipy …
4:19 PM Ticket #3695 (Notes with markers) closed by Tom Goddard
fixed: Fixed in daily build and 1.1 release candidate. Markers with notes …
3:14 PM Ticket #3652 (Main graphics goes gray) closed by Tom Goddard
nonchimerax: Ok. Good. But the Nvidia graphics will give better performance than …
11:07 AM Ticket #3692 (Crash during popup window) closed by Tom Goddard
can't reproduce: User has 3 screens. Possibly a Qt bug related to the popup (atom …
10:58 AM Ticket #3691 (Map pixel-size precision) closed by Tom Goddard
nonchimerax: It is using the full precision pixel size that you set, it only …
9:43 AM Ticket #3696 (ISOLDE color-picker problem) created by rjr27@…
[…]
9:02 AM Ticket #3693 (Crash popping up atom spec or tooltip) closed by pett
can't reproduce
4:47 AM Ticket #3695 (Notes with markers) created by r.frank@…
[…]
1:45 AM Ticket #3694 (Crash adding then deleting residue) created by Tristan Croll
[…]

Sep 6, 2020:

7:18 PM Ticket #3693 (Crash popping up atom spec or tooltip) created by chimerax-bug-report@…
[…]
5:35 PM Ticket #3692 (Crash during popup window) created by chimerax-bug-report@…
[…]
1:10 AM Ticket #3691 (Map pixel-size precision) created by sitins07@…
[…]

Sep 4, 2020:

6:54 PM Ticket #3362 (Run command from VR wand button press) closed by Tom Goddard
fixed: vr button command can assign any command to any VR controller button. …
6:51 PM Ticket #2602 (View command includes vr room camera) closed by Tom Goddard
fixed: Fixed. Made vr room camera not contribute to scene bounds and …
6:48 PM Ticket #2833 (VR room camera depth cue is wrong) closed by Tom Goddard
fixed: Fixed. VR room camera was being included in scene bounds. Made it …
6:33 PM Ticket #2835 (View all misbehaves in VR) closed by Tom Goddard
fixed: Fixed. Problem was that the gui panels were included in the bounds …
6:30 PM Ticket #2810 (Make device realsense enable vr room camera) closed by Tom Goddard
fixed: Made realsense command start vr room camera Feb 10, 2020.
5:54 PM Ticket #2811 (Volume image black backing face for augmented reality videos) closed by Tom Goddard
fixed: Added as volume command option backingColor (can be a color or "none") …
5:35 PM Ticket #2170 (Better VR button assignments for Oculus hand controllers) closed by Tom Goddard
fixed: Fixed on July 5, 2019. Allowed hand controllers to have default …
5:31 PM Ticket #1580 (Make VR grip button move models) closed by Tom Goddard
fixed: Oculus grip button became move models on July 5, 2019.
5:27 PM Ticket #1573 (Turn off depth cueing for VR meeting head and hands) closed by Tom Goddard
fixed: Fixed. Disabled depth cue on VR face model. This was long overdue, …
5:12 PM Ticket #1137 (Add popup menu display in VR gui panel) closed by Tom Goddard
fixed: This was added Sept 23, 2019.
3:53 PM Ticket #3242 (ctrl-click selects all atoms with same name in a residue) closed by pett
fixed: Now uses the much uglier @@serial_number=N specifier when necessary.
2:38 PM Ticket #3690 (ChimeraX hangs at startup, white window, two displays, Windows 10) created by goddard@…
[…]
11:58 AM Ticket #3585 (AddH: unusual positioning) closed by pett
not a bug: For /L5:1907, one proton is positioned to H-bond with /L5:1885@O2' and …
11:32 AM Ticket #3689 (Another Segger obsolete import) closed by Tom Goddard
duplicate: Same as #3688. Bug in ChimeraX nightly build system on Linux is …
2:09 AM Ticket #3689 (Another Segger obsolete import) created by Tristan Croll
[…]
1:47 AM Ticket #3688 (Segger obsolete import) created by Tristan Croll
[…]

Sep 3, 2020:

6:37 PM Ticket #3687 (Find a way for VR meeting to handle firewalls) created by Tom Goddard
For two people at different universities to have a VR meeting one …
3:34 PM Ticket #3686 (Non-obvious menu) closed by Tom Goddard
fixed: Fixed in 1.2. I removed the white menubar background from the Segment …
3:03 PM Ticket #3685 (geometry/graphics memory leak) closed by Tom Goddard
fixed: Believed fixed, but up to you to test since I don't have a test case …
11:04 AM Ticket #3665 (Toolshed updates: Connection refused) closed by Greg Couch
fixed: Revised to always to do updates asynchronously.
8:31 AM Ticket #3686 (Non-obvious menu) created by Tristan Croll
[…]
2:29 AM Ticket #3685 (geometry/graphics memory leak) created by Tristan Croll
[…]
2:09 AM Ticket #3684 (mmCIF memory leak) created by Tristan Croll
[…]

Sep 2, 2020:

7:24 PM Ticket #3675 (Only lower left quadrant of graphics shown, external display) closed by Tom Goddard
fixed: Fixed in nightly build, not in 1.1 release candidate. Won't fix in …
5:07 PM Ticket #3683 (Startup hangs on Windows when initial size spans two screens) created by goddard@…
[…]
3:48 PM Ticket #3682 (Crash when screen removed) created by rsarsam@…
[…]
2:17 PM ChangeLog edited by pett
(diff)
9:19 AM Ticket #3671 (Crash during geometry change) closed by pett
can't reproduce: Thanks for the report and feedback though! --Eric

Sep 1, 2020:

8:05 PM Ticket #3678 (surface cap coloring by zone not saved in session) closed by Tom Goddard
fixed: Fixed in 1.2, not in 1.1 (too risky).. Saved cap models in sessions. …
6:58 PM Ticket #3680 (Clip plane adjustment: Cut fraction is out of range) closed by Tom Goddard
fixed: Fixed. Using sharp edges option with colorzone sometimes caused …
5:59 PM Ticket #3681 (Molecule Display toolbar icons in different orders, sometimes ...) created by Elaine Meng
See attached screenshots showing the Molecule Display tool with …
5:47 PM Ticket #3677 (per-model clipping status not saved in session) closed by Tom Goddard
fixed: Fixed in 1.2. The allow_clipping attribute was not saved in sessions. …
5:05 PM Ticket #2723 (Lazy managers) closed by pett
fixed: A manager with the attribute autostart="false" is lazy.
4:31 PM Ticket #3680 (Clip plane adjustment: Cut fraction is out of range) created by Elaine Meng
[…] bfactorclip.cxc
2:17 PM Ticket #3679 (Unit testing framework?) created by Tristan Croll
API changes in the update to ChimeraX 1.1 have broken both Clipper and …
1:34 PM Ticket #3672 (Deleting residue involved in sequence alignment: list indices must be ...) closed by pett
fixed: Thanks for the report. Fixed in both develop and release branches.
1:33 PM Ticket #3678 (surface cap coloring by zone not saved in session) created by Elaine Meng
Same cxc setup file, png file of how it looked when I saved the …
1:29 PM Ticket #3677 (per-model clipping status not saved in session) created by Elaine Meng
The attached session was saved with atomic model clipping off, surface …
12:55 PM Ticket #3676 (Out-of-date mmCIF templates) created by Tristan Croll
[…]
11:40 AM Ticket #3673 (Need additional trigger-blocking control) closed by pett
fixed: As per your suggestion, added manual_block/release() calls, on both …
11:17 AM Ticket #3675 (Only lower left quadrant of graphics shown, external display) created by pmmcnutt@…
[…] chimerax bug.pptx
10:05 AM Ticket #3674 (Create a video about how to create a bundle) created by Tom Goddard
Would be nice to have a 3 minute video showing all the steps to create …
7:04 AM Ticket #3673 (Need additional trigger-blocking control) created by Tristan Croll
[…]
5:44 AM Ticket #3672 (Deleting residue involved in sequence alignment: list indices must be ...) created by Tristan Croll
[…]

Aug 31, 2020:

8:38 PM Ticket #3671 (Crash during geometry change) created by lynnettj@…
[…]
1:37 PM Ticket #3670 (chimerax 1.0 installation) created by Muyuan.Chen@…
[…]
1:20 PM Ticket #3271 (Line-ending issues for resaved PDB files) closed by pett
fixed: The endings are now uniformly just newline. Fix available in next …
11:23 AM Ticket #3669 (Crash during display change) closed by Tom Goddard
can't reproduce
11:11 AM Ticket #2289 (Suppress log scrolling if log link clicked) closed by pett
fixed: Fixed on develop and release branches.
8:52 AM Ticket #3668 (Problem restoring session) closed by pett
duplicate: Hi Ben, Thanks for reporting this problem. It was fixed on October …
6:14 AM Ticket #3669 (Crash during display change) created by chimerax-bug-report@…
[…]

Aug 30, 2020:

11:57 PM Ticket #3661 (Make ChimeraX start faster, takes 5 seconds) closed by Greg Couch
fixed: Found the culprit. Revised code that dealt with the available bundle …
11:44 PM Ticket #3662 (Re-install not reinstalling) closed by Greg Couch
fixed: Should be fixed :-). Add code to rebuild installed bundle cache if …
11:15 PM Ticket #3666 (Installed bundle not used until restart) closed by Greg Couch
fixed: Needed to create the "user" site-packages/chimerax namespace directory …
6:02 PM Ticket #3668 (Problem restoring session) created by ben.gully@…
[…]

Aug 29, 2020:

2:29 AM Ticket #3664 (Drag select ignoring 'pickable' attribute) closed by Tristan Croll
fixed: Yep - explicitly adding pickable=False to each drawing did the trick.

Aug 28, 2020:

2:07 PM Ticket #3663 (Typo in graphics/drawing.py) closed by Tom Goddard
fixed: Fixed in 1.1 release branch and in develop. Apparently no code was …
1:19 PM Ticket #3667 (non-terminal O3' should not get protonated) created by pett
e.g. /R;127 in 1eyg
9:17 AM Ticket #3666 (Installed bundle not used until restart) created by pett
After installing the BlastProtein bundle from the toolshed (and never …
8:57 AM Ticket #3665 (Toolshed updates: Connection refused) created by pett
[…]
8:28 AM Ticket #3664 (Drag select ignoring 'pickable' attribute) created by Tristan Croll
[…]
8:22 AM Ticket #3663 (Typo in graphics/drawing.py) created by Tristan Croll
[…]
5:00 AM Ticket #3662 (Re-install not reinstalling) created by Tristan Croll
[…]
1:57 AM Ticket #3659 (Failure to correct ligand when no CCD template available) closed by Tristan Croll
fixed: The first traceback here: `AttributeError: 'PositionRestraintMgr' …

Aug 27, 2020:

10:54 PM Ticket #3660 (bundle install failure) closed by Greg Couch
fixed: Available BundleInfo instance needed to be converted to …
5:53 PM Ticket #3661 (Make ChimeraX start faster, takes 5 seconds) created by goddard@…
[…]
3:32 PM Ticket #3660 (bundle install failure) created by pett
[…]
12:30 PM Ticket #3659 (Failure to correct ligand when no CCD template available) created by assaf_alon@…
[…]
10:40 AM Ticket #3173 (BLAST PDB web services being removed November 2020) closed by pett
fixed: Updated Blast Protein to use GraphQL, so all information is retrieved …
9:10 AM Ticket #3658 (Crash opening 128 volumes) created by zhonge@…
[…]

Aug 26, 2020:

4:35 PM ChangeLog edited by Greg Couch
(diff)
3:33 PM NeteSOW edited by Elaine Meng
(diff)
12:17 PM Ticket #2289 (Suppress log scrolling if log link clicked) reopened by Elaine Meng
The problem of scrolling to the bottom of the Log from clicking …
9:51 AM Ticket #3657 (Crash showing tooltip) closed by pett
can't reproduce
9:49 AM Ticket #3655 (Crash while showing window) closed by pett
can't reproduce

Aug 25, 2020:

6:09 PM Ticket #3657 (Crash showing tooltip) created by chimerax-bug-report@…
[…]
5:46 PM Ticket #3656 (Make OBJ reader handle ".mtl" material files using colors and textures) created by Tom Goddard
Would be interesting to be able to open OBJ files with textures on …
5:04 PM Ticket #3655 (Crash while showing window) created by chimerax-bug-report@…
[…]
1:18 PM Ticket #3654 (Mis-named hydrogens) closed by pett
fixed: Fixed. Pushed to both develop and release branches.
11:58 AM Ticket #3651 (Two, two commands in one) closed by pett
fixed: Okay, pushed fixes to both develop and release.
9:56 AM Ticket #3654 (Mis-named hydrogens) created by Elaine Meng
[…]
4:34 AM Ticket #3653 (HETATM vs. ATOM) created by Tristan Croll
[…]
2:02 AM Ticket #3652 (Main graphics goes gray) created by alexyc991@…
[…] bug.PNG

Aug 24, 2020:

6:02 PM Ticket #3651 (Two, two commands in one) created by goddard@…
[…]
4:50 PM Ticket #3218 (Duplicate residues created in Chain) closed by pett
fixed: F86 can be polymeric, but its phosphorus is named P1, so loosened …
3:49 PM Ticket #3650 (degenerate structure) closed by pett
nonchimerax: Hi Valentyn, As per the log message "Structure has degenerate atomic …
3:22 PM Ticket #3650 (degenerate structure) created by sitins07@…
[…]
2:28 PM Ticket #3649 (radio button non-existent) closed by pett
duplicate
2:20 PM Ticket #3646 (Attempt to option-group check button which is None) closed by pett
can't reproduce: Seems impossible looking hard at the code. Would need an actual …
2:11 PM Ticket #3649 (radio button non-existent) created by Elaine Meng
[…]
2:10 PM Ticket #3648 (radio button non-existent) created by Elaine Meng
[…]
1:55 PM Ticket #3647 (Read Amber format) created by J.R.Lewandowsk@…
as per summary
1:26 PM Ticket #3646 (Attempt to option-group check button which is None) created by Elaine Meng
[…]
10:40 AM Ticket #3642 (Bad IDATM typing) closed by pett
not a bug: The residue was named 'A' (e.g. adenosine in RNA) when it shouldn't …

Aug 23, 2020:

2:19 PM Ticket #3276 (nucleotide sugar-tubes disconnected from ribbon in restored session) closed by Tom Goddard
fixed: Fixed. I made Structure update_graphics_if_needed() public and had …

Aug 22, 2020:

11:26 AM Ticket #3341 (Memory error in libqsvg.so on exit) closed by Greg Couch
fixed: Great! I assuming that the switch to building all Linux binary wheels …
10:08 AM ChangeLog edited by Elaine Meng
(diff)
9:10 AM Ticket #3645 (Crash setting chain ID) closed by pett
can't reproduce: Need a _tad_ more info…
12:45 AM Ticket #3645 (Crash setting chain ID) created by chimerax-bug-report@…
[…]

Aug 21, 2020:

9:26 PM Ticket #3644 (config.make sets SSL_CERT_FILE messing up curl fetch during build on Mac) created by Tom Goddard
I've made the ChimeraX build fetch third party libraries from plato …
4:34 PM Ticket #3582 (--offscreen does not work on Linux (or Mac, or Windows)) closed by Greg Couch
worksforme: Need more information about Linux system to help figure out where the …
4:32 PM Ticket #3431 (Add Fedora to RPM list) closed by Greg Couch
fixed: CentOS 8 was based on Fedora 28, so saying RedHat 8/CentOS 8/Fedora …
4:23 PM Ticket #2517 (Start chimeraX (daily version)) closed by Greg Couch
fixed: Newer Intel drivers work. In fact, the workaround broke ChimeraX with …
3:50 PM ChangeLog edited by pett
(diff)
3:22 PM Ticket #2529 (chimerax don't start on windows 10) closed by Greg Couch
duplicate: Duplicate of #2540.
3:20 PM Ticket #2501 (Widget redraw problem) closed by Greg Couch
fixed: Current using Qt 5.12.9. Will be switch to 5.15.? after the 1.1 release.
2:51 PM Ticket #3548 (Nightly build test errors not reported on Linux) closed by Greg Couch
fixed: Redoing of Linux build script appears to have fixed this.
11:40 AM Ticket #3643 (Don't protonate O5' for non-terminal nucleic acids) created by pett
Analogous to not protonating non-C-terminal amino acids. e.g. residue …
11:36 AM Ticket #1122 (AddH adds spurious hydrogen to dangling 5' phosphate) closed by pett
fixed: Fixed on August 3rd
10:52 AM Ticket #3642 (Bad IDATM typing) created by pett
The nitrogen in the attached structure gets typed as N2 despite having …
10:48 AM Ticket #3641 (Map grouping/coloring) closed by Tom Goddard
fixed: Fixed. Now each map will get a distinct color even when opened with a …
9:55 AM Ticket #3640 (Crash showing a tooltip over a button) closed by pett
can't reproduce
2:04 AM Ticket #3641 (Map grouping/coloring) created by sitins07@…
[…]

Aug 20, 2020:

6:58 PM Ticket #3640 (Crash showing a tooltip over a button) created by chimerax-bug-report@…
[…]
5:35 PM Ticket #3388 (MatchMaker tool) closed by pett
fixed: Implemented. Available in next daily build.
5:30 PM ChangeLog edited by pett
(diff)
3:45 PM NeteSOW edited by pett
(diff)
3:16 PM NeteSOW edited by Tom Goddard
(diff)
3:05 PM NeteSOW edited by Tom Goddard
(diff)
2:58 PM NeteSOW edited by Tom Goddard
(diff)
2:50 PM Ticket #3639 (Read EMDB segmentation file format) created by Tom Goddard
The EMDB has developed a segmentation file format for researchers to …
2:24 PM NeteSOW edited by Elaine Meng
(diff)
2:16 PM NeteSOW edited by Elaine Meng
(diff)
2:13 PM NeteSOW edited by Elaine Meng
(diff)
1:54 PM Ticket #3638 (toolshed_utils throwing errors at startup) closed by Greg Couch
fixed
1:43 PM NeteSOW edited by Tom Goddard
(diff)
1:42 PM NeteSOWDraft created by Tom Goddard
1:41 PM Ticket #3638 (toolshed_utils throwing errors at startup) created by pett
[…]
1:40 PM NeteSOW edited by Tom Goddard
(diff)
1:35 PM NeteSOW edited by Tom Goddard
(diff)
1:33 PM NeteSOW created by Tom Goddard
1:15 PM WikiStart edited by Tom Goddard
(diff)
12:48 PM Ticket #3637 (Problems writing mmCIF of partial structure) created by Tristan Croll
[…] surrounding_model.cif
10:58 AM Ticket #3636 (mmcif_write fails with temporary/unopened structure) created by Tristan Croll
[…]
8:22 AM Ticket #3635 (Crash with trashed stack) closed by pett
can't reproduce
7:54 AM Ticket #3635 (Crash with trashed stack) created by chimerax-bug-report@…
[…]
12:22 AM Ticket #3633 ("save xxx.cif sel true" causes a traceback when nothing is selected) closed by Greg Couch
fixed: Now successfully writes an mmCIF file with no atoms when the selection …

Aug 19, 2020:

11:53 PM Ticket #3490 (add restart button to dialog that says updated bundle is in use) closed by Greg Couch
fixed: Works now. And even if the toolshed is a non-standard URL.
8:26 PM Ticket #3476 (Problems reporting Toolshed updates available) closed by Greg Couch
fixed: Since this was core, it can't be fixed without making another release. …
8:13 PM Ticket #3475 (Move toolshed update notification into bundle) closed by Greg Couch
fixed: Added TOOLSHED_OUT_OF_DATE trigger. Moved all installing and …
9:12 AM Ticket #3634 (Test VR with Oculus Quest) created by jadolfbr@…
Jared reports that a 5000 atom structure 2J88 was choppy using VR with …
1:58 AM Ticket #3633 ("save xxx.cif sel true" causes a traceback when nothing is selected) created by Tristan Croll
[…]

Aug 17, 2020:

6:36 PM Ticket #3632 (Update to Qt 5.15) created by Tom Goddard
We should update ChimeraX to use Qt 5.15 (released in May 2020) which …
6:32 PM Ticket #3631 (Move ChimeraX source code to GitHub) created by Tom Goddard
Source code on GItHub will be useful for outside developers. First we …
6:10 PM Ticket #3630 (Remove binary prereqs from ChimeraX git repository) created by Tom Goddard
Remove the large binary distributions of qt, numpy, wxPython, .... …
5:47 PM ChangeLog edited by Elaine Meng
(diff)
4:21 PM Ticket #3629 (cxconference server enables weak TLS ciphers) created by Tom Goddard
The RBVI cxconference server (cxconference.rbvi.ucsf.edu:443) allows …
3:58 PM ChangeLog edited by Elaine Meng
(diff)
1:19 PM ChangeLog edited by pett
(diff)
1:17 PM Ticket #3392 (defattr command) closed by pett
fixed: Available in next daily build
10:04 AM Ticket #3628 (Add command to turn off all directional lighting for a model) closed by Tom Goddard
fixed: I added an option "directional true/false" to the lighting model …
9:27 AM Ticket #3627 (So many errors) closed by Tom Goddard
duplicate: Duplicate of #2779 (fixed).
1:20 AM Ticket #3628 (Add command to turn off all directional lighting for a model) created by Tristan Croll
[…]

Aug 15, 2020:

8:29 AM Ticket #3627 (So many errors) created by chimerax-bug-report@…
[…]

Aug 14, 2020:

5:44 PM Ticket #3626 (Use highest OpenGL version available) created by Tom Goddard
It would be nice if ChimeraX created OpenGL contexts with the highest …
3:51 PM Ticket #3625 (show_surface_clip_caps: Array argument has non-numeric values) closed by Tom Goddard
duplicate: This was fixed more that a year ago (bug #2277). Get ChimeraX 1.0 if …
2:58 PM Ticket #3625 (show_surface_clip_caps: Array argument has non-numeric values) created by zackg@…
[…]
11:46 AM Ticket #3560 (figure 8 camera motion) closed by Tom Goddard
fixed: Implemented wobble command that does figure 8 motion. The wobble …
5:25 AM Ticket #3609 (ISOLDE installation: not a supported wheel on this platform) closed by Tristan Croll
fixed: Just uploaded new Clipper and ISOLDE builds, which should support …

Aug 13, 2020:

5:21 PM Ticket #3624 (Check ABI for Toolshed ability to install) created by Greg Couch
ChimeraX is currently compiled for macOS 10.13, but the ISOLDE bundle …
9:45 AM Ticket #3623 (ISOLDE: cannot import name 'save' from 'chimerax.core.commands') closed by Tristan Croll
duplicate: Thanks for reporting this. The basic problem is that this button is …
3:11 AM Ticket #3623 (ISOLDE: cannot import name 'save' from 'chimerax.core.commands') created by td373@…
[…]
1:48 AM Ticket #3622 (ISOLDE: cannot import name 'save' from 'chimerax.core.commands') closed by Tristan Croll
duplicate: Yes, sorry about that. That button is long since obsolete, and I …

Aug 12, 2020:

11:48 PM Ticket #3375 (Toolshed uninstall failure) closed by Greg Couch
fixed: This was actually a bug in distlib. The next version, > 0.31, should …
11:03 PM Ticket #3522 (prevent installing incompatible bundles) closed by Greg Couch
fixed: Use beta pip --feature=2020-resolver to prevent installing …
6:24 PM Ticket #3612 (label command "onTop false" does not change existing labels) closed by Tom Goddard
fixed: Fixed. Bug in label command caused it to ignore the onTop option …
6:21 PM Ticket #3621 (many labels == problems) closed by Tom Goddard
fixed: Fixed. I made it give a warning message saying too many labels were …
11:46 AM Ticket #3620 (AddH: pretend missing N-terminal MET doesn't exist) closed by pett
wontfix: I dunno, it seems unwise to me to put in a specific heuristic that …
10:09 AM Ticket #3622 (ISOLDE: cannot import name 'save' from 'chimerax.core.commands') created by kartik.manne@…
[…]
Note: See TracTimeline for information about the timeline view.