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#3627 closed defect (duplicate)

So many errors

Reported by:	chimerax-bug-report@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Sessions	Version:	0.91
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 0.91 (2019-12-02)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-12-02)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\gzb420\Desktop\PhD
> project\Thesis\Figures\Figure_lHPF_70S\Figure_lHPF_70S_obstacles.cxs"

Summary of feedback from opening C:\Users\gzb420\Desktop\PhD
project\Thesis\Figures\Figure_lHPF_70S\Figure_lHPF_70S_obstacles.cxs  
---  
warnings | registering illegal selector name "6fxc_Matzov_lHPF"  
registering illegal selector name "6fxc lHPF"  
registering illegal selector name "Sa_h26_B"  
note | Showing Ec_0139_Beckert.seg - 186 regions, 2 surfaces  
  
opened ChimeraX session  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1278+1920+34 (frame:
1942x1334+1909-11) on QWidgetWindow/"MainWindowClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 1920x1106+1920+34 (frame:
1942x1162+1909-11) margins: 11, 45, 11, 11 minimum size: 472x639 MINMAXINFO
maxSize=0,0 maxpos=0,0 mintrack=966,1334 maxtrack=0,0)  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1448+1920+34 (frame:
1942x1504+1909-11) on QWidgetWindow/"MainWindowClassWindow" on
"\\\\.\DISPLAY2". Resulting geometry: 1920x1106+1920+34 (frame:
1942x1162+1909-11) margins: 11, 45, 11, 11 minimum size: 472x724 MINMAXINFO
maxSize=0,0 maxpos=0,0 mintrack=966,1504 maxtrack=0,0)  

> close session

> open "C:\Users\gzb420\Desktop\PhD project\Thesis\Figures\100S_interface.cxs"
> format session

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 653, in restore  
obj = sm.restore_snapshot(self, data)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\basic_actions\statemgr.py", line 65, in restore_snapshot  
cmd.name_frozen(session, name, Objects(**value))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\basic_actions\cmd.py", line 52, in name_frozen  
raise UserError("nothing is selected by specifier")  
chimerax.core.errors.UserError: nothing is selected by specifier  
  
Summary of feedback from opening C:\Users\gzb420\Desktop\PhD
project\Thesis\Figures\100S_interface.cxs  
---  
warnings | registering illegal selector name "6fxc_Matzov_lHPF"  
registering illegal selector name "6fxc lHPF"  
registering illegal selector name "Sa_h26_B"  
  
opened ChimeraX session  

> open "C:\Users\gzb420\Desktop\PhD
> project\Thesis\Figures\Figure_lHPF_70S\Figure_lHPF_70S_obstacles.cxs"

Summary of feedback from opening C:\Users\gzb420\Desktop\PhD
project\Thesis\Figures\Figure_lHPF_70S\Figure_lHPF_70S_obstacles.cxs  
---  
warnings | registering illegal selector name "6fxc_Matzov_lHPF"  
registering illegal selector name "6fxc lHPF"  
registering illegal selector name "Sa_h26_B"  
note | Showing Ec_0139_Beckert.seg - 186 regions, 2 surfaces  
  
opened ChimeraX session  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1278+0+34 (frame:
1942x1334-11-11) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY2".
Resulting geometry: 1920x1106+0+34 (frame: 1942x1162-11-11) margins: 11, 45,
11, 11 minimum size: 472x639 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=966,1334 maxtrack=0,0)  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1448+0+34 (frame:
1942x1504-11-11) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY2".
Resulting geometry: 1920x1106+0+34 (frame: 1942x1162-11-11) margins: 11, 45,
11, 11 minimum size: 472x724 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=966,1504 maxtrack=0,0)  

> save session "C:/Users/gzb420/Desktop/PhD
> project/Thesis/Figures/100S_interface_2.cxs"

> hide #!7 models

> hide #!10 models

> hide #!19 models

> close #19

> show #!5 models

> hide #!2 models

> close #7

> close #9

> close #10

> close #11

> close #12

> close #13

> close #16

> close #17

> close #15

> show #!18 models

> close #3-4,8,14#1.1#2.1-2#5.1-2#6.1#18.1-2#1-2,5-6,18

> open "C:\Users\gzb420\Desktop\PhD
> project\Thesis\Figures\100S_interface_2.cxs" format session

Summary of feedback from opening C:\Users\gzb420\Desktop\PhD
project\Thesis\Figures\100S_interface_2.cxs  
---  
warnings | registering illegal selector name "6fxc_Matzov_lHPF"  
registering illegal selector name "6fxc lHPF"  
registering illegal selector name "Sa_h26_B"  
note | Showing Ec_0139_Beckert.seg - 186 regions, 2 surfaces  
  
opened ChimeraX session  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1218+0+34 (frame:
1942x1274-11-11) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY2".
Resulting geometry: 1920x1106+0+34 (frame: 1942x1162-11-11) margins: 11, 45,
11, 11 minimum size: 472x609 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=966,1274 maxtrack=0,0)  

QWindowsWindow::setGeometry: Unable to set geometry 1920x1448+0+34 (frame:
1942x1504-11-11) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY2".
Resulting geometry: 1920x1106+0+34 (frame: 1942x1162-11-11) margins: 11, 45,
11, 11 minimum size: 472x724 MINMAXINFO maxSize=0,0 maxpos=0,0
mintrack=966,1504 maxtrack=0,0)  

> close #19

> close #18

> close #17

> close #16

> close #15

> select #14

281510 atoms, 306086 bonds, 8488 pseudobonds, 3 models selected  

> close #13

> close #12

> close #11

> close #10

> close #9

> close #7

> save session "C:/Users/gzb420/Desktop/PhD
> project/Thesis/Figures/100S_interface_2.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  
RuntimeError: Error while saving session data for 'tools' -> -> -> -> :
'NoneType' object is not subscriptable  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
  
See log for complete Python traceback.  
  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 454, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1632, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 36, in run_provider  
tool.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 311, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 228, in _file_save  
session.ui.main_window.file_save_cb(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 641, in file_save_cb  
self.save_dialog.display(self, session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 139, in display  
fmt.save(session, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 1100, in save  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2837, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 992, in save_session  
save(session, filename, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 220, in export  
result = self.export_func(session, path, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 454, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1632, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 36, in run_provider  
tool.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 311, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 228, in _file_save  
session.ui.main_window.file_save_cb(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 641, in file_save_cb  
self.save_dialog.display(self, session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 139, in display  
fmt.save(session, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 1100, in save  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2837, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 992, in save_session  
save(session, filename, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 220, in export  
result = self.export_func(session, path, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 171, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 459, in run_provider  
"run_provider() failed in bundle %s:\n%s" % (self.name, str(e)))  
chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle
ChimeraX-Toolbar:  
Error while saving session data for 'tools' -> <chimerax.core.tools.Tools
object at 0x000001DA38DD28C8> -> <chimerax.segger.fit_dialog.FitSegmentsDialog
object at 0x000001DAC3F063C8> -> <chimerax.segger.fit_dialog.Fit object at
0x000001DAC492CF08> -> <chimerax.segger.regions.Region object at
0x000001DB67BD5048>: 'NoneType' object is not subscriptable  
  
chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle
ChimeraX-Toolbar:  
Error while saving session data for 'tools' -> -> -> -> : 'NoneType' object is
not subscriptable  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 459, in run_provider  
"run_provider() failed in bundle %s:\n%s" % (self.name, str(e)))  
  
See log for complete Python traceback.  
  

> save session "C:/Users/gzb420/Desktop/PhD
> project/Thesis/Figures/100S_interface_3.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  
RuntimeError: Error while saving session data for 'tools' -> -> -> -> :
'NoneType' object is not subscriptable  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
  
See log for complete Python traceback.  
  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 454, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1632, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 36, in run_provider  
tool.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 311, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 228, in _file_save  
session.ui.main_window.file_save_cb(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 641, in file_save_cb  
self.save_dialog.display(self, session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 139, in display  
fmt.save(session, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 1100, in save  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2837, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 992, in save_session  
save(session, filename, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 220, in export  
result = self.export_func(session, path, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 276, in process  
data = sm.take_snapshot(obj, session, self.state_flags)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\segger\regions.py", line 1353, in take_snapshot  
data['_surface_color'] = sp.color  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 530, in get_color  
return self._colors[0]  
TypeError: 'NoneType' object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 454, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1632, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 36, in run_provider  
tool.run_provider(session, name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 311, in run_provider  
what(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 228, in _file_save  
session.ui.main_window.file_save_cb(session)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 641, in file_save_cb  
self.save_dialog.display(self, session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\save_dialog.py", line 139, in display  
fmt.save(session, filename)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 1100, in save  
run(session, cmd)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2837, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 992, in save_session  
save(session, filename, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\save.py", line 61, in save  
fmt.export(session, filename, fmt.nicknames[0], **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 220, in export  
result = self.export_func(session, path, **kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 796, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 556, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 255, in discovery  
self.processed[key] = self.process(obj, parents)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 279, in process  
raise RuntimeError(msg)  
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000001DA38DD28C8> ->
<chimerax.segger.fit_dialog.FitSegmentsDialog object at 0x000001DAC3F063C8> ->
<chimerax.segger.fit_dialog.Fit object at 0x000001DAC492CF08> ->
<chimerax.segger.regions.Region object at 0x000001DB67BD5048>: 'NoneType'
object is not subscriptable  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 171, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 459, in run_provider  
"run_provider() failed in bundle %s:\n%s" % (self.name, str(e)))  
chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle
ChimeraX-Toolbar:  
Error while saving session data for 'tools' -> <chimerax.core.tools.Tools
object at 0x000001DA38DD28C8> -> <chimerax.segger.fit_dialog.FitSegmentsDialog
object at 0x000001DAC3F063C8> -> <chimerax.segger.fit_dialog.Fit object at
0x000001DAC492CF08> -> <chimerax.segger.regions.Region object at
0x000001DB67BD5048>: 'NoneType' object is not subscriptable  
  
chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle
ChimeraX-Toolbar:  
Error while saving session data for 'tools' -> -> -> -> : 'NoneType' object is
not subscriptable  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 459, in run_provider  
"run_provider() failed in bundle %s:\n%s" % (self.name, str(e)))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 20.19.15.5126
OpenGL renderer: Intel(R) HD Graphics 5500
OpenGL vendor: Intel

Change History (2)

comment:1 by pett, 5 years ago

Component:	Unassigned → Sessions
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → So many errors
Version:	→ 0.91

Old version (0.91). So many choices, but assigned this to the last error, which was Segger session saving.

comment:2 by Tom Goddard, 5 years ago

Resolution:	→ duplicate
Status:	assigned → closed

Duplicate of #2779 (fixed).

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