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Opened 5 years ago
Closed 5 years ago
#3625 closed defect (duplicate)
show_surface_clip_caps: Array argument has non-numeric values
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Surface | Version: | 0.91 |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-07-30) Description Rightmouse: clipping: clip and then click in window. Log: UCSF ChimeraX version: 0.91 (2019-07-30) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume bin #1 binSize 1 > volume #12 voxelSize 0.166666667 > volume multiply #1 > view orient cofr false > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume gaussian #1 sDev 1.0 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume gaussian #1 sDev 1.0 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > hide #!14 models > hide #!15 models > hide #!4 models > show #!15 models > hide #!15 models > show #!14 models > show #!6 models > hide #!6 models > show #!4 models > volume #15 style surface color gray transparency 0.66 level 3.64 > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume bin #1 binSize 1 > volume #12 voxelSize 0.166666667 > volume multiply #1 > view orient cofr false > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume bin #1 binSize 1 > volume #12 voxelSize 0.166666667 > view orient cofr false > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume bin #1 binSize 1 > volume #12 voxelSize 0.25 > view orient cofr false > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume bin #1 binSize 1 > volume #12 voxelSize 0.25 > view orient cofr false > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 0.25 > view orient cofr false Missing or invalid "volumes" argument: empty atom specifier > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 0.25 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 0.125 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 0.25 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume voxelSize 1 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction.mrc" Summary of feedback from opening /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction.mrc, grid size 256,256,256, pixel 1, shown at level 795, step 1, values float32 > volume voxelSize 0.25 > volume voxelSize 0.125 > volume #1 voxelSize 0.125 > volume #1 voxelSize 0.25 > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume median #1 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume median #1 binSize 5 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 2 > volume median #1 binSize 3 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 4 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 6.24 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 3.51 > volume #6 projectionMode 3d > volume #6 hide > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color limegreen level 0.502 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 4 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 8.14 > volume #13 projectionMode 3d > volume #13 show > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 3.64 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > volume add #13 #14 > volume maximum #13 #14 > volume maximum #13 #14 > volume gaussian #16 sDev 1 > volume gaussian #16 sDev 0.2 > volume #6 transparency 0.66 > volume #6 transparency 1 > volume #6 transparency 0 > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 12.3 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 8.01 > volume #6 projectionMode 3d > volume #6 show > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color yellow level 5.21 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 5.56 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 4 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 16.1 > volume #13 projectionMode 3d > volume #13 show > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 5.09 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 15.0 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 8.01 > volume #6 projectionMode 3d > volume #6 show > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color yellow level 5.21 > volume #7 projectionMode 3d > volume #7 show > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 6.16 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 4 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 13.5 > volume #13 projectionMode 3d > volume #13 show > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 6.35 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > close session > open "/Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/ManyElementsinChimeraX.cxc" > open 4bin/C_reconstruction_cropped.mrc Summary of feedback from opening 4bin/C_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/C_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened C_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.11, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #2 style surface color red > volume #2 projectionMode 3d > volume #2 hide > open 4bin/Al_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Al_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Al_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Al_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 1.65, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #3 style surface color red > volume #3 projectionMode 3d > volume #3 hide > open 4bin/Fe_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Fe_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Fe_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Fe_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 9.15, step 1, values float32 > view orient cofr false > volume #1 voxelSize 1 > volume multiply #1 > close #1 > volume #4 style surface color red level 15.0 > volume #4 projectionMode 3d > volume #4 show > open 4bin/Ca_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ca_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ca_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ca_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.485, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #5 style surface color limegreen > volume #5 projectionMode 3d > volume #5 hide > open 4bin/Mg_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Mg_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Mg_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Mg_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.34, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #6 style surface color limegreen level 8.01 > volume #6 projectionMode 3d > volume #6 show > open 4bin/Ni_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Ni_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Ni_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Ni_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #7 style surface color yellow level 5.21 > volume #7 projectionMode 3d > volume #7 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #8 style surface color royalblue > volume #8 projectionMode 3d > volume #8 hide > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #9 style surface color royalblue > volume #9 projectionMode 3d > volume #9 hide > open 4bin/S_reconstruction_cropped.mrc Summary of feedback from opening 4bin/S_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/S_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened S_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #10 style surface color royalblue level 6.16 > volume #10 projectionMode 3d > volume #10 show > open 4bin/Cr_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Cr_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Cr_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Cr_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 0.506, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #11 style surface color royalblue > volume #11 projectionMode 3d > volume #11 hide > open 4bin/HAADF_reconstruction_cropped.mrc Summary of feedback from opening 4bin/HAADF_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/HAADF_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened HAADF_reconstruction_cropped.mrc, grid size 256,256,256, pixel 0.00391, shown at level 665, step 1, values float32 > volume #1 voxelSize 0.25 > view orient cofr false > volume bin #1 binSize 4 > close #1 > volume #12 style surface color white > volume #12 projectionMode 3d > volume #12 hide > open 4bin/O_reconstruction_cropped.mrc Summary of feedback from opening 4bin/O_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/O_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened O_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 20.6, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #13 style surface color gray transparency 0.66 level 13.5 > volume #13 projectionMode 3d > volume #13 show > open 4bin/Si_reconstruction_cropped.mrc Summary of feedback from opening 4bin/Si_reconstruction_cropped.mrc --- note | /Volumes/ParticleBase/IDPs/IDP L2071-S CL12/L2071 Cl12 S1/20170301 - TitanX - L2071-Cl12-S1/008 - TomoEDS 80kx, 300s maps, 10 nA - 5 kcps - 10 deg tilts/20190412 - NewAnalysis/4bin/Si_reconstruction_cropped.mrc: invalid cell angles 0,0,0 must be between 0 and 180. Opened Si_reconstruction_cropped.mrc, grid size 64,64,64, pixel 0.0156, shown at level 6.37, step 1, values float32 > volume #1 voxelSize 1 > view orient cofr false > volume multiply #1 > close #1 > volume #14 style surface color gray transparency 0.66 level 6.35 > volume #14 projectionMode 3d > volume #14 show > view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671 > lighting shadows true intensity 0.5 executed ManyElementsinChimeraX.cxc > ui mousemode rightMode clip Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values [_many_ of these deleted] File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py", line 61, in draw_new_frame surface.update_clip_caps(view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. OpenGL version: 4.1 ATI-3.10.16 OpenGL renderer: AMD Radeon R9 M395 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Surface |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → show_surface_clip_caps: Array argument has non-numeric values |
| Version: | → 0.91 |
comment:2 by , 5 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
This was fixed more that a year ago (bug #2277). Get ChimeraX 1.0 if you want this to work.
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Reported by Zack Gainsforth