![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 13, 2024:
- 6:46 PM Ticket #16469 (Sequence wrong length during session restore) created by
- […]
- 4:14 PM Ticket #16468 (Crash in garbage collection) created by
- […]
- 1:25 PM Ticket #16467 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 12:24 PM Ticket #16454 (Crash in event loop) reopened by
- 9:24 AM Ticket #16466 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:22 AM Ticket #16464 (Crash handling text input in save dialog) closed by
- can't reproduce
- 9:20 AM Ticket #16463 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:19 AM ChangeLog edited by
- (diff)
- 9:18 AM Ticket #16462 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:07 AM Ticket #16460 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:22 AM Ticket #16466 (Crash on Mac waking from sleep) created by
- […]
- 6:03 AM Ticket #16465 (flip_matrix: 'NoneType' object is not subscriptable) created by
- […]
- 5:51 AM Ticket #16464 (Crash handling text input in save dialog) created by
- […]
- 2:57 AM Ticket #16463 (Could not instantiate StructureSeq.structure) created by
- […]
- 2:38 AM Ticket #16462 (Could not instantiate StructureSeq.structure) created by
- […]
Dec 12, 2024:
- 9:35 PM Ticket #16461 (Find Cavities crash) created by
- […]
- 6:09 PM Ticket #10294 (coordset slider doesn't have changed number of coord sets) closed by
- fixed: Coordinate set slider now replaces itself if the number of coordinate …
- 5:59 PM 2024-12-12 edited by
- (diff)
- 4:20 PM Ticket #16460 (Crash on Mac waking from sleep) created by
- […]
- 3:01 PM Ticket #16450 (Add Charge failure) closed by
- not a bug: The semi-empirical program (sqm) that is computing these charges for …
- 1:21 PM Milestone 1.9 completed
- * ScholAR tool * Raycasting for medical images * Greg will keep …
- 9:51 AM Ticket #16456 (Crash in garbage collection) closed by
- duplicate: This 1.9 version predates some of the fixes.
- 9:44 AM Ticket #16455 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:43 AM Ticket #16454 (Crash in event loop) closed by
- can't reproduce: Not sure how a timer could be being stopped from another thread at startup
- 9:06 AM Ticket #16459 (Crash importing matplotlib via DICOM) created by
- […]
Dec 11, 2024:
- 5:24 PM Ticket #16457 (Session restore failed: decompression failure) created by
- […]
- 3:03 PM Ticket #16456 (Crash in garbage collection) created by
- […]
- 2:32 PM Ticket #16455 (Crash on Mac waking from sleep) created by
- […]
- 12:57 PM Ticket #16454 (Crash in event loop) created by
- […]
- 11:54 AM Ticket #16452 (MemoryError opening mmCIF file) closed by
- duplicate
- 11:53 AM Ticket #16451 (Crash opening mmCIF) closed by
- can't reproduce
- 11:15 AM Ticket #16453 (Command-C on Mac ChimeraX 1.9 does not copy selected text) closed by
- fixed: Fixed in 1.9. Made keystroke forwarding ignore lone Command key press …
- 11:11 AM Ticket #16449 (Crash in swap_buffers) closed by
- can't reproduce
- 11:09 AM Ticket #16448 (Crash in event loop) closed by
- can't reproduce
- 10:28 AM Ticket #16453 (Command-C on Mac ChimeraX 1.9 does not copy selected text) created by
- […]
- 10:10 AM Ticket #16447 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce: Well, this person is persistent, I have to say.
- 10:03 AM Ticket #16446 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce: Tried reproducing with just the first two structures but it seems that …
- 9:58 AM Ticket #16445 (Could not instantiate StructureSeq.structure) closed by
- can't reproduce
- 9:21 AM Ticket #16452 (MemoryError opening mmCIF file) created by
- […]
- 9:19 AM Ticket #16444 (Crash in garbage collection) closed by
- duplicate
- 3:45 AM Ticket #16451 (Crash opening mmCIF) created by
- […]
- 12:41 AM Ticket #16450 (Add Charge failure) created by
- […] 6vei_top1.pdb
Dec 10, 2024:
- 11:16 PM Ticket #16449 (Crash in swap_buffers) created by
- […]
- 10:31 PM Ticket #16448 (Crash in event loop) created by
- […]
- 5:55 PM ChangeLog edited by
- (diff)
- 1:50 PM Ticket #16442 (RFE: saving session automatically saves a named view) closed by
- fixed: Okay, the command "view name session-start" is now issued after a …
- 11:43 AM Dev2024-12-16 created by
- 11:43 AM 2024-12-12 created by
- 11:42 AM DeveloperMeetings edited by
- (diff)
- 11:21 AM Ticket #16447 (Could not instantiate StructureSeq.structure) created by
- […]
- 11:18 AM Ticket #16446 (Could not instantiate StructureSeq.structure) created by
- […]
- 11:09 AM Ticket #16445 (Could not instantiate StructureSeq.structure) created by
- […]
- 10:01 AM Ticket #16444 (Crash in garbage collection) created by
- […]
- 9:41 AM Ticket #16443 (Crash using open/save dialog) closed by
- can't reproduce
- 9:38 AM Ticket #16441 (Crash closing QDockWidget) closed by
- can't reproduce
- 5:08 AM Ticket #16443 (Crash using open/save dialog) created by
- […]
Dec 9, 2024:
- 4:40 PM Ticket #16371 (BLAST needs to deal with missing AlphaFold v1-3) closed by
- Made it so the GUI doesn't go below version 4 for AlphaFold
- 4:40 PM Ticket #16371 (BLAST needs to deal with missing AlphaFold v1-3) closed by
- fixed: Made it so the GUI doesn't go below version 4 for AlphaFold
- 3:59 PM Dev2024-12-9 edited by
- (diff)
- 3:02 PM Ticket #16238 (Download DICOM thread garbage collected while running) closed by
- fixed: Should be fixed as of …
- 2:32 PM Ticket #16442 (RFE: saving session automatically saves a named view) created by
- Every time I am working on some kind of figure I really wish that when …
- 11:49 AM Ticket #16434 (Similar Structures BLAST search with no matches: list index out of range) closed by
- fixed: Fixed in 1.9 and 1.10 daily builds. Made similarstructures blast and …
- 11:45 AM Ticket #16441 (Crash closing QDockWidget) created by
- […]
- 11:01 AM Ticket #16440 (H-Bonds: acc_phi_psi() bad number of arguments) closed by
- limitation: Bad connectivity
- 10:58 AM Ticket #16439 (Crash in python_instances_of_class) closed by
- duplicate
- 10:57 AM Ticket #16438 (Matchmaker: argument of type 'NoneType' is not iterable) closed by
- duplicate: Hi Baturay, Thanks for reporting this problem. It has been fixed in …
- 10:51 AM Ticket #16437 (Molecular Dynamics Viewer: list index out of range) closed by
- limitation
- 10:47 AM Ticket #16433 (Crash in garbage collection) closed by
- duplicate: Hi Mikhail, Thanks for reporting this problem. It is fixed in …
- 8:58 AM Ticket #16440 (H-Bonds: acc_phi_psi() bad number of arguments) created by
- […]
- 8:29 AM Ticket #16439 (Crash in python_instances_of_class) created by
- […]
- 7:47 AM Ticket #16438 (Matchmaker: argument of type 'NoneType' is not iterable) created by
- […]
Dec 7, 2024:
- 10:33 PM Ticket #16437 (Molecular Dynamics Viewer: list index out of range) created by
- […]
- 10:00 PM Ticket #16436 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:47 AM Ticket #16435 (ISOLDE: itemgetter expected 1 argument, got 0) created by
- […]
- 8:25 AM Ticket #16434 (Similar Structures BLAST search with no matches: list index out of range) created by
- […]
- 2:36 AM Ticket #16433 (Crash in garbage collection) created by
- […]
Dec 6, 2024:
- 2:25 PM Ticket #16432 ('ObjectLabels' object has no attribute '_structure_change_handler') closed by
- duplicate: Hi Eric, Thanks for reporting this problem. It was fixed a couple of …
- 2:21 PM Ticket #16431 (AddCharge: H-H bond in standard residue) closed by
- duplicate
- 1:38 PM Ticket #16432 ('ObjectLabels' object has no attribute '_structure_change_handler') created by
- […]
- 12:13 PM Ticket #16431 (AddCharge: H-H bond in standard residue) created by
- […]
- 11:33 AM Ticket #16430 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:28 AM Ticket #16429 (AlphaFold Error Plot: list index out of range) closed by
- duplicate: Fixed long ago in ChimeraX 1.8.
- 9:11 AM Ticket #16420 (Combine: Cannot set polymeric chain ID directly from Residue) closed by
- fixed: Fix: …
- 8:58 AM Ticket #16428 (Problem fetching UniProt entry) closed by
- duplicate
- 8:53 AM Ticket #16426 (Load DICOM hierarchy: a real number is required, not NoneType) closed by
- fixed: Fixed by restarting
- 8:51 AM Ticket #16425 (Crash in python_instances_of_class) closed by
- duplicate
- 8:48 AM Ticket #16424 (Crash in python_instances_of_class) closed by
- duplicate
- 8:47 AM Ticket #16423 (UnicodeDecodeError opening PDB file) closed by
- can't reproduce: Possibly control codes from a text editor.
- 8:03 AM Ticket #16430 (Graphics crash, macOS 13.1, Intel Iris Plus Graphics) created by
- […]
- 3:44 AM Ticket #16429 (AlphaFold Error Plot: list index out of range) created by
- […]
- 3:42 AM Ticket #16428 (Problem fetching UniProt entry) created by
- […]
- 1:24 AM Ticket #16427 (SEQCROW: problems reading ORCA output) created by
- […]
Dec 5, 2024:
- 8:37 PM Ticket #16426 (Load DICOM hierarchy: a real number is required, not NoneType) created by
- […]
- 5:44 PM Ticket #16425 (Crash in python_instances_of_class) created by
- […]
- 5:41 PM Ticket #16424 (Crash in python_instances_of_class) created by
- […]
- 4:00 PM NIAID2024 edited by
- (diff)
- 2:11 PM NIAID2024 edited by
- (diff)
- 2:05 PM NIAID2024 edited by
- (diff)
- 1:38 PM NIAID2024 edited by
- (diff)
- 11:20 AM Ticket #16423 (UnicodeDecodeError opening PDB file) created by
- […]
- 10:59 AM Ticket #16421 (FoldSeek: Permission denied writing temp file) closed by
- nonchimerax: ChimeraX tried to write a temporary mmCIF atomic model file to send to …
- 10:37 AM Ticket #16422 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:28 AM Ticket #16419 (Crash running save dialog) closed by
- can't reproduce
- 10:25 AM Ticket #16418 (Crash opening mmCIF) closed by
- duplicate
- 10:21 AM 2024-12-5 edited by
- (diff)
- 10:19 AM Ticket #16415 (Crash in garbage collection) closed by
- duplicate
- 10:14 AM NIAID2024 edited by
- (diff)
- 4:17 AM Ticket #16422 (Crash on Mac waking from sleep) created by
- […]
Dec 4, 2024:
- 10:35 PM Ticket #16421 (FoldSeek: Permission denied writing temp file) created by
- […]
- 5:58 PM Ticket #16420 (Combine: Cannot set polymeric chain ID directly from Residue) created by
- […]
- 4:58 PM Ticket #16419 (Crash running save dialog) created by
- […]
- 4:46 PM Ticket #16418 (Crash opening mmCIF) created by
- […]
- 3:37 PM Ticket #16417 (Crash opening mmCIF) created by
- […]
- 3:19 PM Ticket #16416 (Crash opening mmCIF) created by
- […]
- 11:42 AM Ticket #16408 (Clipper: ArrayMemoryError creating NXmapHandler) closed by
- limitation: I suspect this memory error is not caused by ISOLDE. There is a …
- 11:39 AM Ticket #16405 (MemoryError saving map in session) closed by
- limitation: The user ran out of memory. It happened to be while saving a session …
- 11:05 AM Ticket #16415 (Crash in garbage collection) created by
- […]
- 10:58 AM Ticket #16414 (ISOLDE install failed in Mac ChimeraX 1.8 due to Clipper version) created by
- […]
- 10:02 AM Ticket #16412 (H-bonds: acc_phi_psi() number of arguments) closed by
- not a bug: Bad connectivity
- 10:01 AM Ticket #16411 (MemoryError opening mmCIF file) closed by
- duplicate
- 9:59 AM Ticket #16410 (Non-ASCII character in PDB file) closed by
- can't reproduce: Looking at the log, it seems there's a pretty fair chance the user …
- 9:51 AM Ticket #16407 (Crash handling text input in save dialog) closed by
- can't reproduce
- 9:50 AM Ticket #16406 ('ObjectLabels' object has no attribute '_structure_change_handler') closed by
- fixed: The changes to handle pseudobond-deletion-while-unopened moved the …
- 8:54 AM Ticket #16413 (Crash checking for changes during "lighting soft") created by
- […]
- 8:22 AM Ticket #16412 (H-bonds: acc_phi_psi() number of arguments) created by
- […]
- 7:53 AM Ticket #16411 (MemoryError opening mmCIF file) created by
- […]
- 7:09 AM Ticket #16410 (Non-ASCII character in PDB file) created by
- […]
- 5:57 AM Ticket #16409 (Failure importing clipper_python) created by
- […]
- 4:08 AM Ticket #16408 (Clipper: ArrayMemoryError creating NXmapHandler) created by
- […]
- 2:19 AM Ticket #16407 (Crash handling text input in save dialog) created by
- […]
Dec 3, 2024:
- 7:53 PM Ticket #16406 ('ObjectLabels' object has no attribute '_structure_change_handler') created by
- […]
- 7:31 PM Ticket #16405 (MemoryError saving map in session) created by
- […]
- 2:55 PM Ticket #16403 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 2:53 PM Ticket #16404 (Make bug reporter give advice for common crashes) closed by
- fixed
- 2:50 PM Ticket #16404 (Make bug reporter give advice for common crashes) created by
- Would like to have Bug Reporter detect common crashes that we cannot …
- 1:05 PM Dev2024-12-9 created by
- 1:04 PM 2024-12-5 created by
- 1:02 PM DeveloperMeetings edited by
- (diff)
- 10:52 AM Ticket #16398 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M, starting ISOLDE ...) closed by
- nonchimerax
- 10:21 AM Ticket #16374 (KVFinder "nearby" value not valid) closed by
- fixed: Hi Thibault, This is fixed in the daily build now. Since the fix …
- 8:42 AM Ticket #16401 (Add Charge failure) closed by
- limitation
- 8:39 AM Ticket #16399 (Crash in graphics driver during Qt drawing) closed by
- can't reproduce: Crashed in 1.6.1; Reported in 1.8
- 7:56 AM Ticket #16403 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M) created by
- […]
- 7:55 AM Ticket #16402 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 7:31 AM Ticket #16401 (Add Charge failure) created by
- […]
- 12:27 AM Ticket #16400 (Save trajectory in session: bytes object is too large) created by
- […]
- 12:03 AM Ticket #16399 (Crash in graphics driver during Qt drawing) created by
- […]
Dec 2, 2024:
- 8:41 PM Ticket #16398 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5500M, starting ISOLDE ...) created by
- […]
- 5:17 PM Ticket #16385 (Attempt to save 3D label for dead pseudobond in session) closed by
- fixed: Morph was deleting atoms (and therefore pseudobonds connected to them, …
- 4:00 PM Dev2024-12-2 edited by
- (diff)
- 12:36 PM Ticket #16396 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Error in glClear() trying to draw the status line after an expose …
- 12:32 PM Ticket #16394 (Invalid texture upload) closed by
- nonchimerax: Appears to be an opengl driver error in glBufferData() creating a …
- 12:27 PM Ticket #16393 (Attempt to retrieve context when no valid context) closed by
- nonchimerax: ChimeraX failed to start because of OpenGL problems. The Qt window …
- 12:23 PM Ticket #16392 (vop gaussian: ArrayMemoryError) closed by
- limitation: User trying to smooth a 150 Gbyte map file.
- 12:09 PM Ticket #16397 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:07 PM Ticket #16395 (Find H-bonds: More than 2 coplanar positions specified) closed by
- not a bug: Hi Jitendra, This error typically occurs because there are …
- 11:47 AM Ticket #16391 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:46 AM Ticket #16390 (Find Cavities crash) closed by
- duplicate: Hi Adiana, As per ticket #16387, if you could provide any examples …
- 11:40 AM Ticket #16389 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:38 AM Ticket #16388 (Viewing Gromacs output) closed by
- not a bug
- 6:48 AM Ticket #16397 (Crash on Mac waking from sleep) created by
- […]
- 6:11 AM Ticket #16396 (glClear: invalid framebuffer operation) created by
- […]
- 6:05 AM Ticket #16395 (Find H-bonds: More than 2 coplanar positions specified) created by
- […]
Dec 1, 2024:
- 11:10 PM Ticket #16394 (Invalid texture upload) created by
- […]
- 7:57 AM Ticket #16393 (Attempt to retrieve context when no valid context) created by
- […]
- 1:41 AM Ticket #16392 (vop gaussian: ArrayMemoryError) created by
- […]
Nov 29, 2024:
- 10:40 AM Ticket #16391 (Crash on Mac waking from sleep) created by
- […]
- 2:52 AM Ticket #16390 (Find Cavities crash) created by
- […]
Nov 28, 2024:
- 7:41 AM Ticket #16389 (Crash on Mac waking from sleep) created by
- […]
- 6:44 AM Ticket #16388 (Viewing Gromacs output) created by
- […] 1ao7.pdb
- 6:12 AM Ticket #16387 (Find Cavities crash) created by
- […]
- 4:17 AM Ticket #16386 (Coulombic: 'Atom' object has no attribute 'charge') created by
- […]
Nov 27, 2024:
- 7:02 PM Ticket #16384 (Graphics crash, macOS 11.7, Intel HD Graphics 6000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:53 PM Ticket #16383 (Crash showing sequence viewer) closed by
- limitation: If the "AL123456.3.fasta" file in this report is the same as the one …
- 2:11 PM Ticket #16385 (Attempt to save 3D label for dead pseudobond in session) created by
- […]
- 2:08 PM Ticket #16382 (Crash as MatchMaker tool closes) closed by
- can't reproduce
- 12:41 PM Ticket #16384 (Graphics crash, macOS 11.7, Intel HD Graphics 6000) created by
- […]
- 12:18 PM Ticket #16377 (Save map fits: m.filename is None) closed by
- fixed: Fixed in 1.9 and 1.10. User used "fit search" to fit an atomic model …
- 11:46 AM Ticket #16379 (Crash showing tool window) closed by
- can't reproduce: Hi Dewight, Thanks for reporting this problem. I would recommend …
- 11:41 AM Ticket #16378 (Save map fits: m.filename is None) closed by
- duplicate
- 10:26 AM Ticket #16383 (Crash showing sequence viewer) created by
- […]
- 1:19 AM Ticket #16382 (Crash as MatchMaker tool closes) created by
- […]
Nov 26, 2024:
- 4:24 PM Ticket #16221 (Read CHAI-1 PAE .npy files) closed by
- fixed: Done in ChimeraX 1.9 and 1.10. I made the AlphaFold Error Plot tool …
- 3:55 PM Ticket #16381 (Recognize AlphaFold 3 PAE json file name automatically) closed by
- fixed: Fixed in 1.9 and 1.10. AlphaFold 3 local run produces model and PAE …
- 3:50 PM Ticket #16381 (Recognize AlphaFold 3 PAE json file name automatically) created by
- […]
- 3:29 PM Ticket #16380 (Make crosseye and walleye camera start with good initial geometry) closed by
- fixed: Done in ChimeraX 1.10 daily builds, not in 1.9. The cross-eye …
- 3:23 PM Ticket #16380 (Make crosseye and walleye camera start with good initial geometry) created by
- I tried helping Bob Stroud make a cross-eye stereo pair image …
- 2:17 PM Ticket #16379 (Crash showing tool window) created by
- […]
- 12:31 PM Ticket #16372 (Problematic Fragment shader source code) closed by
- nonchimerax: The error is complaining about Qt a window toolkit OpenGL shader …
- 12:27 PM Ticket #16378 (Save map fits: m.filename is None) created by
- […]
- 12:26 PM Ticket #16377 (Save map fits: m.filename is None) created by
- […]
- 12:26 PM Dev2024-12-2 created by
- 12:24 PM DeveloperMeetings edited by
- (diff)
- 11:39 AM Ticket #16376 (Crash in garbage collection) closed by
- duplicate
- 11:37 AM Ticket #16376 (Crash in garbage collection) created by
- […]
- 9:29 AM Ticket #16373 (Crash in Sequence::rname3to1 drawing ribbons after restoring session) closed by
- can't reproduce
- 4:16 AM Ticket #16375 ('Segmentation' object has no attribute 'data') created by
- […]
- 2:27 AM Ticket #16374 (KVFinder "nearby" value not valid) created by
- […]
- 2:19 AM Ticket #16373 (Crash in Sequence::rname3to1 drawing ribbons after restoring session) created by
- […]
- 12:07 AM Ticket #16372 (Problematic Fragment shader source code) created by
- […]
Nov 25, 2024:
- 7:01 PM Dev2024-11-25 edited by
- (diff)
- 2:43 PM Ticket #16368 (Save movie: ArrayMemoryError) closed by
- can't reproduce: Could not allocate 34 Mbytes for a framebuffer image (3000 x 3000 x 4) …
- 2:29 PM Ticket #16367 (Save surface in session: ArrayMemoryError) closed by
- duplicate: Duplicate of #16365
- 2:27 PM Ticket #16365 (volume splitbyzone: ArrayMemoryError) closed by
- limitation: Out of memory with volume split by zone on Windows 10 with only 8 GB …
- 2:26 PM Ticket #16361 (Crash in find_close_points_boxes recursion) closed by
- limitation: find_close_points() crashed due to an infinite recursion and stack …
- 2:05 PM Ticket #16371 (BLAST needs to deal with missing AlphaFold v1-3) created by
- 11:32 AM Ticket #16370 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 11:31 AM Ticket #16369 (Crash in Metal driver drawing Qt widget) closed by
- can't reproduce
- 11:15 AM Ticket #16364 (Crash in open/save dialog on Windows) closed by
- can't reproduce
- 11:14 AM Ticket #16363 ('MarkedHistogram' object has no attribute '_min_val') closed by
- duplicate
- 11:10 AM Ticket #16362 (Error setting cavity color) closed by
- fixed: This is fixed, but the fix is in the upcoming changes to Find …
- 7:36 AM Ticket #16370 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Nov 24, 2024:
- 8:23 PM Ticket #16369 (Crash in Metal driver drawing Qt widget) created by
- […]
- 4:27 PM Ticket #16368 (Save movie: ArrayMemoryError) created by
- […]
- 1:50 AM Ticket #16367 (Save surface in session: ArrayMemoryError) created by
- […]
Nov 23, 2024:
Nov 22, 2024:
- 10:56 PM Ticket #16365 (volume splitbyzone: ArrayMemoryError) created by
- […]
- 10:20 PM Ticket #16364 (Crash in open/save dialog on Windows) created by
- […]
- 8:31 PM Ticket #16363 ('MarkedHistogram' object has no attribute '_min_val') created by
- […]
- 6:51 PM Ticket #16362 (Error setting cavity color) created by
- […]
- 6:08 PM Ticket #16361 (Crash in find_close_points_boxes recursion) created by
- […]
- 2:09 PM Ticket #16359 (Crash on Mac waking from sleep) closed by
- duplicate: ChimeraX crashed in the Qt window toolkit. This is a bug in Qt which …
- 2:03 PM Ticket #16352 (vop add: ArrayMemoryError) closed by
- limitation: Out of memory allocating a volume from volume add command. Working …
- 1:47 PM Ticket #16348 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:59 AM NIAID2024 edited by
- (diff)
- 10:51 AM NIAID2024 edited by
- (diff)
- 10:50 AM NIAID2024 edited by
- (diff)
- 10:49 AM NIAID2024 edited by
- (diff)
- 10:48 AM NIAID2024 edited by
- (diff)
- 10:22 AM Ticket #16360 (Crash in garbage collection) closed by
- duplicate
- 10:14 AM Ticket #16360 (Crash in garbage collection) created by
- […]
- 8:48 AM Ticket #16358 (ui view fourup: ZeroDivisionError) closed by
- duplicate
- 8:45 AM Ticket #16356 (Crash drawing widget) closed by
- can't reproduce: Hi Nicolas, The version of ChimeraX you are using (0.91) is five …
- 4:24 AM Ticket #16359 (Crash on Mac waking from sleep) created by
- […]
- 1:56 AM Ticket #16358 (ui view fourup: ZeroDivisionError) created by
- […]
- 1:56 AM Ticket #16357 (ui view fourup: ZeroDivisionError) created by
- […]
- 1:53 AM Ticket #16356 (Crash drawing widget) created by
- […]
Nov 21, 2024:
- 4:35 PM Ticket #16354 (Cannot save preferences file: No space left on device) closed by
- nonchimerax
- 4:32 PM Ticket #16353 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Muralikrishna, Thanks for reporting this problem. It is fixed in …
- 4:27 PM Ticket #16351 (Color byattr: min() arg is an empty sequence) closed by
- can't reproduce
- 4:26 PM Ticket #16350 (Crash running open-file dialog) closed by
- can't reproduce
- 4:21 PM Ticket #16347 (Crash on Mac waking from sleep) closed by
- duplicate
- 3:44 PM Ticket #16346 (Bug with the user-defined selector) closed by
- can't reproduce: Hi Suli-Anne, Thanks for reporting this problem. Since "name frozen" …
- 1:33 PM 2024-11-21 edited by
- (diff)
- 12:41 PM Ticket #16355 (help matchmaker: 'NoneType' object has no attribute 'split') created by
- […]
- 11:57 AM Ticket #16354 (Cannot save preferences file: No space left on device) created by
- […]
- 8:45 AM Ticket #16353 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:37 AM Ticket #16352 (vop add: ArrayMemoryError) created by
- […]
- 1:02 AM Ticket #16351 (Color byattr: min() arg is an empty sequence) created by
- […]
- 12:07 AM Ticket #16350 (Crash running open-file dialog) created by
- […]
Nov 20, 2024:
- 10:16 PM 2024-11-21 edited by
- (diff)
- 10:15 PM 2024-11-21 edited by
- (diff)
- 5:05 PM Ticket #16061 (Support chains in "color byattribute") closed by
- fixed: Implemented chain attributes in the "color byattribute" command. The …
- 3:54 PM Ticket #16349 (Session save: Unable to restore objects of IHMModel class in ...) created by
- […]
- 1:43 PM Ticket #16348 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by
- […]
- 1:19 PM Ticket #16347 (Crash on Mac waking from sleep) created by
- […]
- 12:27 PM Ticket #16346 (Bug with the user-defined selector) created by
- […]
- 11:40 AM Ticket #16333 (Render by Attribute: cannot create weak reference to 'NoneType' object) closed by
- fixed: Fix: …
- 11:39 AM ChangeLog edited by
- (diff)
- 10:25 AM Ticket #16344 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by
- duplicate: Fixed months ago. This bug was only in a few daily builds.
- 9:58 AM Ticket #16345 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by
- duplicate
- 9:52 AM Ticket #16342 (Crash moving window between screens) closed by
- can't reproduce
- 9:49 AM Ticket #16341 (Crash on exit) closed by
- can't reproduce
- 8:31 AM Ticket #16345 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by
- […]
- 8:30 AM Ticket #16344 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by
- […]
- 7:41 AM Ticket #16343 (SEQCROW: 'Session' object has no attribute 'log') created by
- […]
- 4:37 AM Ticket #16342 (Crash moving window between screens) created by
- […]
- 3:32 AM Ticket #16341 (Crash on exit) created by
- […]
Nov 19, 2024:
- 6:44 PM Ticket #16339 (Crash on Mac waking from sleep) closed by
- duplicate: ChimeraX crashed due to a bug in the Qt window toolkit. It seems to …
- 5:36 PM Ticket #16338 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:34 PM Ticket #16337 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:33 PM Ticket #16336 (Crash closing models) closed by
- can't reproduce: Some were combinations, but that's not enough to go on.
- 4:52 PM Dev2024-11-25 edited by
- (diff)
- 1:56 PM Ticket #16340 (ISOLDER: Scipy symbol not found while registering command) created by
- […]
- 1:55 PM Ticket #16339 (Crash on Mac waking from sleep) created by
- […]
- 1:37 PM Ticket #16338 (Crash on Mac waking from sleep) created by
- […]
- 12:03 PM Ticket #16337 (Crash on Mac waking from sleep) created by
- […]
- 11:55 AM Dev2024-11-25 edited by
- (diff)
- 11:54 AM Dev2024-11-25 created by
- 11:53 AM 2024-11-21 created by
- 11:37 AM Ticket #16336 (Crash closing models) created by
- […]
- 11:36 AM DeveloperMeetings edited by
- (diff)
- 11:25 AM Ticket #16335 (Segmentations: KeyError deleting VolumeImage) created by
- […]
- 11:25 AM Ticket #16334 (DICOM: index is out of bounds) created by
- […]
- 10:59 AM Ticket #16331 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:58 AM Ticket #16327 (Session tries to add same model twice) closed by
- can't reproduce: They are using Segger and opened some .seg segmentations from Segger. …
- 10:58 AM Ticket #16330 (ArtiaX: superqt slider: float division by zero) closed by
- duplicate
- 10:49 AM Ticket #16328 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:45 AM Ticket #16326 (Crash running open/save dialog) closed by
- can't reproduce
- 10:37 AM Ticket #16332 (Covalent vs. coordination bonds) closed by
- fixed: In the 1.8 build they are covalent, but in the daily build from 10/29 …
- 10:12 AM Ticket #16333 (Render by Attribute: cannot create weak reference to 'NoneType' object) created by
- […]
- 9:48 AM Ticket #16332 (Covalent vs. coordination bonds) created by
- The heme iron bonds in mmCIF 6fqf are covalent when they should be …
- 3:35 AM Ticket #16331 (Crash on Mac waking from sleep) created by
- […]
- 2:45 AM Ticket #16330 (ArtiaX: superqt slider: float division by zero) created by
- […]
- 1:33 AM Ticket #16329 (ArtiaX: superqt slider: float division by zero) created by
- […]
Nov 18, 2024:
- 8:47 PM Ticket #16328 (Crash on Mac waking from sleep) created by
- […]
- 5:03 PM Ticket #16327 (Session tries to add same model twice) created by
- […]
- 4:30 PM Dev2024-11-18 edited by
- (diff)
- 4:21 PM Ticket #9398 (issues opening 4D heart ultrasound data from Rubinstein) closed by
- fixed: I unfortunately don't remember when I fixed this, but it doesn't give …
- 3:27 PM Dev2024-11-18 edited by
- (diff)
- 3:10 PM Dev2024-11-18 edited by
- (diff)
- 2:49 PM Ticket #16325 (Modeller mismatch failure) closed by
- fixed: Fixed. Fix available in next daily build and 1.9 release candidate. …
- 1:57 PM Ticket #16326 (Crash running open/save dialog) created by
- […]
- 12:19 PM Dev2024-11-18 edited by
- (diff)
- 12:07 PM Ticket #16324 (Crash on Mac waking from sleep) closed by
- duplicate: Did you have a second display connected to your iMac when ChimeraX …
- 11:35 AM Ticket #16322 (glBufferData: out of memory) closed by
- can't reproduce: glBufferData() failed allocating 48 bytes on expose event showing …
- 11:26 AM Ticket #1211 (show nucleotide representations for modified nucleic acids) closed by
- fixed: The floating in space bug was fixed in #5732. Not planning to add …
- 11:05 AM Ticket #16325 (Modeller mismatch failure) created by
- I still have some problems with the reconstructions of the loop …
- 10:55 AM Ticket #16324 (Crash on Mac waking from sleep) created by
- […]
- 10:39 AM Ticket #16319 (Nov 14 2024 MacOS md5 wrong) closed by
- can't reproduce: Probably a delay in updating the website. Today's build's hash is …
- 10:37 AM 2024-11-14 edited by
- (diff)
- 10:13 AM Ticket #16323 (Crash in QListWidgetitem.text()) closed by
- can't reproduce
- 10:05 AM Ticket #16320 (Tool window close: tool_instance is None) closed by
- can't reproduce: No idea what this person is doing, opening the same UniProt over and …
- 9:50 AM Ticket #16323 (Crash in QListWidgetitem.text()) created by
- […]
- 9:14 AM Ticket #16322 (glBufferData: out of memory) created by
- […]
- 6:50 AM Ticket #16321 (MTZ file missing or corrupted) created by
- […]
- 4:05 AM Ticket #16320 (Tool window close: tool_instance is None) created by
- […]
Nov 16, 2024:
Nov 15, 2024:
- 1:35 PM Ticket #6977 (PDB two-letter chain ID sometimes not recognized if TER missing) closed by
- fixed: Now if the chain ID changes between consecutive records, the code just …
- 11:51 AM Ticket #16315 (KeyError adding standard charges) closed by
- fixed: Was already catching non-standard-residue charge errors. Now do the …
- 11:24 AM Ticket #16318 (Crash at startup) closed by
- can't reproduce: Looks like it crashed in the Chromium process
- 11:08 AM Dev2024-11-18 edited by
- (diff)
- 11:02 AM Ticket #16318 (Crash at startup) created by
- […]
- 10:11 AM Ticket #16317 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:04 AM Ticket #16316 (Crash on Mac waking from sleep) closed by
- duplicate: The usual Mac Qt 6.7 crash in …
- 9:53 AM Ticket #16312 (Crash on Mac waking from sleep, Qt 6.7) closed by
- duplicate: Crash in Qt 6.7 in _NSViewHierarchyDidChangeBackingProperties. I'm …
- 9:53 AM Ticket #16314 (Crash in Qt rendering after opening a bazillion sequence viewers) closed by
- can't reproduce: Again, don't know how/why the user is creating this many sequence viewers
- 9:50 AM Ticket #16313 (Crash in Qt rendering after opening a bazillion sequence viewers) closed by
- can't reproduce: AFAIK, the user needs to specifically allow that many sequence viewers …
- 9:48 AM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) closed by
- duplicate
- 9:48 AM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) reopened by
- 8:11 AM Ticket #16317 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics 645) created by
- […]
- 5:38 AM Ticket #16316 (Crash on Mac waking from sleep) created by
- […]
Nov 14, 2024:
- 6:15 PM Ticket #16315 (KeyError adding standard charges) created by
- […]
- 3:54 PM Ticket #16314 (Crash in Qt rendering after opening a bazillion sequence viewers) created by
- […]
- 3:53 PM Ticket #16313 (Crash in Qt rendering after opening a bazillion sequence viewers) created by
- […]
- 2:21 PM AddTracUser edited by
- (diff)
- 1:59 PM Ticket #16312 (Crash on Mac waking from sleep, Qt 6.7) created by
- […]
- 1:48 PM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) closed by
- fixed: The usual Qt 6.7 crash in _NSViewHierarchyDidChangeBackingProperties. …
- 1:45 PM Ticket #16308 (Crash showing full lighting) closed by
- can't reproduce: Python traceback claims it crashed in _geometry.invert_orthonormal(). …
- 1:26 PM Ticket #16307 (Crash showing side view) closed by
- can't reproduce: Need a reproducible test case. Tried everything from the last close …
- 1:05 PM Ticket #16309 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:55 PM Ticket #16306 (Cannot save preferences file: No such file or directory) closed by
- can't reproduce: Something weird is going on here. The ChimeraX PID was 2! Virtual …
- 12:06 PM Ticket #16311 (Crash on Mac waking from sleep, Qt 6.7) created by
- […]
- 12:05 PM 2024-11-14 edited by
- (diff)
- 12:04 PM 2024-11-14 edited by
- (diff)
- 11:45 AM Ticket #16012 (ChimeraX bug report submission) closed by
- fixed
- 11:43 AM Ticket #16011 (using Schol-AR tool, failure to create an augmentation for my project) closed by
- fixed
- 11:40 AM Ticket #16035 (Schol-AR gives "no session file found") closed by
- fixed
- 10:54 AM Ticket #16305 (Crash with XCB errors) closed by
- nonchimerax: Apparently the xcb X11 client library lost the connection to the …
- 10:46 AM Ticket #16304 (Crash in garbage collection) closed by
- duplicate
- 10:37 AM Ticket #16310 (Port WriteDMS) created by
- per summary
- 10:31 AM Ticket #16302 (Missing tools) closed by
- limitation: Hi Bruce, Despite the fact that the ChimeraX Structure Editing menu …
- 10:30 AM Ticket #16301 (Session save: SphereModel not in MapEraser's get_class()) closed by
- fixed: Fixed in daily build only, not 1.9. User color zoned the map eraser …
- 7:22 AM Ticket #16309 (Crash on Mac waking from sleep) created by
- […]
- 7:06 AM Ticket #16308 (Crash showing full lighting) created by
- […]
- 6:54 AM Ticket #16307 (Crash showing side view) created by
- […]
- 5:35 AM Ticket #16306 (Cannot save preferences file: No such file or directory) created by
- […]
- 3:30 AM Ticket #16305 (Crash with XCB errors) created by
- […]
- 2:08 AM Ticket #16304 (Crash in garbage collection) created by
- […]
- 12:50 AM Ticket #16303 (ISOLDE: 'MDFFMgr' object has no attribute 'was_deleted') created by
- […]
Nov 13, 2024:
- 9:20 PM Ticket #16302 (Missing tools) created by
- […]
- 8:26 PM Ticket #16301 (Session save: SphereModel not in MapEraser's get_class()) created by
- […]
- 12:36 PM ChangeLog edited by
- (diff)
- 12:35 PM ChangeLog edited by
- (diff)
- 10:01 AM Ticket #16300 (Inadequate OpenGL version) closed by
- nonchimerax: The only solution is to update your computer graphics driver or use a …
- 9:56 AM Ticket #16298 (Segger: realpath(): Operation not permitted) closed by
- nonchimerax: This error means ChimeraX has been started in a directory that you …
- 9:31 AM Ticket #16299 (Segger: realpath(): Operation not permitted) closed by
- duplicate
- 9:28 AM Ticket #16297 (Crash moving window between screens) closed by
- duplicate: Also: "The cached device pixel ratio value was stale on window expose"
- 2:16 AM Ticket #16300 (Inadequate OpenGL version) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
