The following bug report has been submitted:
Platform: Linux-4.18.0-425.3.1.el8.x86_64-x86_64-with-glibc2.28
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff5422fd740 (most recent call first):
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 497 in swap_buffers
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/ui/statusbar.py", line 152 in status
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/ui/statusbar.py", line 84 in _expose_event
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/runpy.py", line 87 in _run_code
File "/usr/libexec/UCSF-ChimeraX/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
QXcbConnection: XCB error: 3 (BadWindow), sequence: 457, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 458, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 459, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 468, resource id: 67108884,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 469, resource id: 67108883,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 484, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 485, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 486, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 493, resource id: 67108889,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 494, resource id: 67108888,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 506, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 507, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 508, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 513, resource id: 67108895,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 13 (BadGC), sequence: 514, resource id: 67108894,
major code: 60 (FreeGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 525, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 526, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 527, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 669, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 670, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 671, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 701, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 702, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 703, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 772, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 773, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 774, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 804, resource id: 0, major
code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 805, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 806, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 1003, resource id: 0,
major code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 1004, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 1005, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 3 (BadWindow), sequence: 1012, resource id: 0,
major code: 148 (Unknown), minor code: 3
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 1013, resource id: 0,
major code: 55 (CreateGC), minor code: 0
QXcbConnection: XCB error: 9 (BadDrawable), sequence: 1014, resource id: 0,
major code: 55 (CreateGC), minor code: 0
OpenGL version: 3.3.0 NVIDIA 550.135
OpenGL renderer: NVIDIA GeForce RTX 3090/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb
XDG_SESSION_TYPE=
DESKTOP_SESSION=
XDG_SESSION_DESKTOP=
XDG_CURRENT_DESKTOP=
DISPLAY=127.0.0.1:10.0
Manufacturer: Supermicro
Model: X12DAi-N6
OS: Rocky Linux 8.7 Green Obsidian
Architecture: 64bit ELF
Virtual Machine: none
CPU: 64 Intel(R) Xeon(R) Silver 4314 CPU @ 2.40GHz
Cache Size: 24576 KB
Memory:
total used free shared buff/cache available
Mem: 251Gi 156Gi 61Gi 207Mi 33Gi 93Gi
Swap: 31Gi 63Mi 31Gi
Graphics:
03:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 52)
DeviceName: Aspeed Video 2600
Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000]
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2022.9.24
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Probably X windows remote display connection broke.