![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 11 months ago
Closed 11 months ago
#16455 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.7.10-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x000000011721ce00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 53)
Process: ChimeraX [36191]
Path: /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.8.0 (1.8.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [36191]
User ID: 504
Date/Time: 2024-12-10 17:03:52.588 -0700
OS Version: macOS 11.7.10 (20G1427)
Report Version: 12
Anonymous UUID: 8862288F-2CEA-186B-3285-B794DF8E3FD0
Sleep/Wake UUID: 942FF392-7D55-4A01-9F28-71A06DE66D8D
Time Awake Since Boot: 190000 seconds
Time Since Wake: 27000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2036d90e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2039c5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20280bd5 raise + 26
3 org.python.python 0x000000010cbfb534 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff203e1d7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libqcocoa.dylib 0x000000012cb46566 0x12caeb000 + 374118
7 com.apple.AppKit 0x00007fff22cc83c4 _NSViewHierarchyDidChangeBackingProperties + 394
8 com.apple.AppKit 0x00007fff2354c049 -[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:] + 222
9 com.apple.AppKit 0x00007fff22ee9103 __67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke + 552
10 com.apple.AppKit 0x00007fff22cef08f NSPerformVisuallyAtomicChange + 132
11 com.apple.AppKit 0x00007fff22ee8ed5 -[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:] + 69
12 com.apple.AppKit 0x00007fff22cf08e0 -[NSWindow _setFrameCommon:display:fromServer:] + 1401
13 com.apple.AppKit 0x00007fff230ee1cf -[_NSWindowFullScreenContentController reshapeContentForTileFrame:fromFrame:] + 710
14 com.apple.AppKit 0x00007fff2377ce99 -[_NSFullScreenSpace updateTileShapeAndReshapeContentsUsingTileFrame:ackServer:] + 271
15 com.apple.AppKit 0x00007fff2377cd60 -[_NSFullScreenSpace _updateTileShapeAndReshapeContentsWithAckServer:] + 135
16 com.apple.AppKit 0x00007fff232da9dc __47+[NSCGSSpace addTileResizeNotificationHandler:]_block_invoke + 187
17 com.apple.Foundation 0x00007fff211fb07a -[__NSObserver _doit:] + 287
18 com.apple.CoreFoundation 0x00007fff2048a463 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
19 com.apple.CoreFoundation 0x00007fff20525ed9 ___CFXRegistrationPost_block_invoke + 49
20 com.apple.CoreFoundation 0x00007fff20525e54 _CFXRegistrationPost + 496
21 com.apple.CoreFoundation 0x00007fff2045b6ce _CFXNotificationPost + 736
22 com.apple.Foundation 0x00007fff211cec18 -[NSNotificationCenter postNotificationName:object:userInfo:] + 59
23 com.apple.SkyLight 0x00007fff24e2a8f5 post_coordinated_distributed_notification(CGSNotificationType, void*, unsigned int, void*) + 471
24 com.apple.SkyLight 0x00007fff24c44ce4 CGSPostLocalNotification + 274
25 com.apple.SkyLight 0x00007fff24c44778 (anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*) + 98
26 com.apple.SkyLight 0x00007fff24ee6d28 CGSDatagramReadStream::dispatchMainQueueDatagrams() + 202
27 com.apple.SkyLight 0x00007fff24ee6c4f invocation function for block in CGSDatagramReadStream::mainQueueWakeup() + 18
28 libdispatch.dylib 0x00007fff201f1623 _dispatch_call_block_and_release + 12
29 libdispatch.dylib 0x00007fff201f2806 _dispatch_client_callout + 8
30 libdispatch.dylib 0x00007fff201feb4f _dispatch_main_queue_callback_4CF + 940
31 com.apple.CoreFoundation 0x00007fff204d18d8 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 9
32 com.apple.CoreFoundation 0x00007fff20493b32 __CFRunLoopRun + 2755
33 com.apple.CoreFoundation 0x00007fff204929ac CFRunLoopRunSpecific + 563
34 com.apple.HIToolbox 0x00007fff286dd1f3 RunCurrentEventLoopInMode + 292
35 com.apple.HIToolbox 0x00007fff286dcf55 ReceiveNextEventCommon + 587
36 com.apple.HIToolbox 0x00007fff286dccf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
37 com.apple.AppKit 0x00007fff22c9cad2 _DPSNextEvent + 864
38 com.apple.AppKit 0x00007fff22c9b2a5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
39 com.apple.AppKit 0x00007fff22c8d5c9 -[NSApplication run] + 586
40 libqcocoa.dylib 0x000000012cb01f0d 0x12caeb000 + 93965
41 QtCore 0x000000011bd7b616 QEventLoop::exec(QFlags) + 486
42 QtCore 0x000000011bd72117 QCoreApplication::exec() + 119
43 QtWidgets.abi3.so 0x000000011e48814c meth_QApplication_exec(_object*, _object*) + 92
44 org.python.python 0x000000010ca8e1da cfunction_call + 90
45 org.python.python 0x000000010ca28ff1 _PyObject_MakeTpCall + 129
46 org.python.python 0x000000010cb57277 _PyEval_EvalFrameDefault + 61255
47 org.python.python 0x000000010cb46fea PyEval_EvalCode + 282
48 org.python.python 0x000000010cb41873 builtin_exec + 483
49 org.python.python 0x000000010ca8eb34 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
50 org.python.python 0x000000010cb5717f _PyEval_EvalFrameDefault + 61007
51 org.python.python 0x000000010cb5d280 _PyEval_Vector + 128
52 org.python.python 0x000000010cbf465d pymain_run_module + 253
53 org.python.python 0x000000010cbf4121 Py_RunMain + 2225
54 org.python.python 0x000000010cbf50db pymain_main + 43
55 org.python.python 0x000000010cbf50aa Py_Main + 42
56 edu.ucsf.cgl.ChimeraX 0x000000010c981d9a main + 122
57 libdyld.dylib 0x00007fff203b7f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e3232df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e3232df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010e3232df blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203701b2 kevent64 + 10
1 QtWebEngineCore 0x00000001246767f4 0x11fe5f000 + 75593716
2 QtWebEngineCore 0x00000001246765df 0x11fe5f000 + 75593183
3 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
4 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
5 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
6 QtWebEngineCore 0x00000001246218cd 0x11fe5f000 + 75245773
7 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462e3ca 0x11fe5f000 + 75297738
6 QtWebEngineCore 0x000000012462dcfd 0x11fe5f000 + 75295997
7 QtWebEngineCore 0x000000012462dbef 0x11fe5f000 + 75295727
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 6:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462e3ca 0x11fe5f000 + 75297738
6 QtWebEngineCore 0x000000012462dc6d 0x11fe5f000 + 75295853
7 QtWebEngineCore 0x000000012462dc14 0x11fe5f000 + 75295764
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203701b2 kevent64 + 10
1 QtWebEngineCore 0x00000001246767f4 0x11fe5f000 + 75593716
2 QtWebEngineCore 0x00000001246765df 0x11fe5f000 + 75593183
3 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
4 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
5 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
6 QtWebEngineCore 0x0000000122c7d302 0x11fe5f000 + 48358146
7 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203701b2 kevent64 + 10
1 QtWebEngineCore 0x00000001246767f4 0x11fe5f000 + 75593716
2 QtWebEngineCore 0x00000001246765df 0x11fe5f000 + 75593183
3 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
4 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
5 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
6 QtWebEngineCore 0x0000000127384e02 0x11fe5f000 + 122838530
7 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 11:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000124656944 0x11fe5f000 + 75462980
3 QtWebEngineCore 0x0000000126a831c5 0x11fe5f000 + 113394117
4 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 12:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462de57 0x11fe5f000 + 75296343
6 QtWebEngineCore 0x000000012462dd2d 0x11fe5f000 + 75296045
7 QtWebEngineCore 0x000000012462dc28 0x11fe5f000 + 75295784
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 14:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x0000000124594062 0x11fe5f000 + 74666082
5 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
6 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
7 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
8 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
9 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
10 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 15:: NetworkService
0 libsystem_kernel.dylib 0x00007fff203701b2 kevent64 + 10
1 QtWebEngineCore 0x00000001246767f4 0x11fe5f000 + 75593716
2 QtWebEngineCore 0x00000001246765df 0x11fe5f000 + 75593183
3 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
4 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
5 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
6 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
7 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
8 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462e3ca 0x11fe5f000 + 75297738
6 QtWebEngineCore 0x000000012462dd5d 0x11fe5f000 + 75296093
7 QtWebEngineCore 0x000000012462dc1e 0x11fe5f000 + 75295774
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 18:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 com.apple.GeForceMTLDriver 0x00007fff63bd8c53 0x7fff63a6d000 + 1490003
3 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 20:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x00000001245ef1b3 0x11fe5f000 + 75039155
5 QtWebEngineCore 0x00000001245940c9 0x11fe5f000 + 74666185
6 QtWebEngineCore 0x0000000124615051 0x11fe5f000 + 75194449
7 QtWebEngineCore 0x00000001245c80d8 0x11fe5f000 + 74879192
8 QtWebEngineCore 0x000000012463b6a8 0x11fe5f000 + 75351720
9 QtWebEngineCore 0x000000012463b83e 0x11fe5f000 + 75352126
10 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
11 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 21:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462de57 0x11fe5f000 + 75296343
6 QtWebEngineCore 0x000000012462dc9d 0x11fe5f000 + 75295901
7 QtWebEngineCore 0x000000012462dc3c 0x11fe5f000 + 75295804
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 22:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20494ebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2049359f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204929ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e22b7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 23:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 25:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 26:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 27:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 28:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 29:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 30:
0 libsystem_kernel.dylib 0x00007fff20369cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2039ce49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff20305d72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 QtWebEngineCore 0x000000012659e196 0x11fe5f000 + 108261782
4 QtWebEngineCore 0x000000012659f88b 0x11fe5f000 + 108267659
5 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 31:
0 libsystem_pthread.dylib 0x00007fff20398420 start_wqthread + 0
Thread 32:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2036729a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2036760c mach_msg + 60
2 QtWebEngineCore 0x00000001246807b6 0x11fe5f000 + 75634614
3 QtWebEngineCore 0x00000001245ef246 0x11fe5f000 + 75039302
4 QtWebEngineCore 0x000000012462d48a 0x11fe5f000 + 75293834
5 QtWebEngineCore 0x000000012462de57 0x11fe5f000 + 75296343
6 QtWebEngineCore 0x000000012462dcfd 0x11fe5f000 + 75295997
7 QtWebEngineCore 0x000000012462dbef 0x11fe5f000 + 75295727
8 QtWebEngineCore 0x0000000124657538 0x11fe5f000 + 75466040
9 libsystem_pthread.dylib 0x00007fff2039c8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20398443 thread_start + 15
Thread 33:
0 libsystem_pthread.dylib 0x00007fff20398420 start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x00007fff20398420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011721ce00 rcx: 0x00007fab98ddd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007fab98ddda10 rsp: 0x00007fab98ddd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000011721ce00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000001 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2036d90e rfl: 0x0000000000000246 cr2: 0x000000010cd67720
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
8b 45 c0 48 85 c0 74 14-f0 83 28 01 75 0e 48 8b .E.H..t...(.u.H.
7d c0 e8 d7 9e 02 00 eb-03 48 89 c3 48 8d 7d e8 }........H..H.}.
e8 07 94 02 00 48 89 df-e8 77 8b 02 00 66 2e 0f .....H...w...f..
1f 84 00 00 00 00 00 0f-1f 00 55 48 89 e5 41 57 ..........UH..AW
41 56 53 48 83 ec 58 49-89 ff 48 8b 05 01 1b 05 AVSH..XI..H.....
00 48 8b 0c 07 8b 49 04-48 8b 7c 07 08 48 8b 07 .H....I.H.|..H..
[ff]90 68 01 00 00 f2 0f-11 45 b0 e8 7a f7 fb ff ..h......E..z... /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
0x10c98f000 - 0x10cd66fff +org.python.python (3.11.4, [c] 2001-2023 Python Software Foundation. - 3.11.4) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x10d2c4000 - 0x10d2cffff +math.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x10d3e0000 - 0x10d3effff +_datetime.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x10d404000 - 0x10d407fff +_typing.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x10d614000 - 0x10d61bfff +zlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x10d62c000 - 0x10d62ffff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x10d63c000 - 0x10d66bfff +_lzma.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x10d680000 - 0x10d683fff +_bisect.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x10d690000 - 0x10d693fff +_random.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x10d6a0000 - 0x10d6a7fff +_sha512.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
0x10d6b4000 - 0x10d6bbfff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x10d6c8000 - 0x10d6cffff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x10d6e0000 - 0x10d6e3fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x10d6f0000 - 0x10d6f3fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x10d700000 - 0x10d707fff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x10d814000 - 0x10d817fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x10d824000 - 0x10d937fff +libarrays.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10da64000 - 0x10df1bfff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x10dfd4000 - 0x111f27fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x112204000 - 0x112846fff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x112881000 - 0x1128cefff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1128d8000 - 0x1128e8fff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x1169fa000 - 0x116a15fff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x116a2a000 - 0x116a2dfff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x116a3a000 - 0x116a4dfff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x116b5e000 - 0x116b71fff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x116b8a000 - 0x116bb1fff +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x116cc2000 - 0x116cd5fff +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
0x116ce2000 - 0x116d81fff +mtrand.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/mtrand.cpython-311-darwin.so
0x116d9e000 - 0x116dc5fff +bit_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/bit_generator.cpython-311-darwin.so
0x116dda000 - 0x116e09fff +_common.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_common.cpython-311-darwin.so
0x116f1e000 - 0x116f25fff +_hashlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_hashlib.cpython-311-darwin.so
0x116f36000 - 0x116f3dfff +_blake2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_blake2.cpython-311-darwin.so
0x116f4a000 - 0x116f99fff +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
0x116fb6000 - 0x116fc9fff +_mt19937.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_mt19937.cpython-311-darwin.so
0x116fda000 - 0x116fe9fff +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x116ffa000 - 0x11700dfff +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x11701e000 - 0x117029fff +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x11703a000 - 0x1170f5fff +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
0x117116000 - 0x117119fff +_opcode.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_opcode.cpython-311-darwin.so
0x117126000 - 0x11712dfff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x117145000 - 0x1171e0fff dyld (852.2) /usr/lib/dyld
0x11925d000 - 0x119484fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
0x11b625000 - 0x11b648fff +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x11b961000 - 0x11bb04fff +QtCore.abi3.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x11bced000 - 0x11c20cfff +QtCore (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x11e1df000 - 0x11e1f6fff com.apple.security.csparser (3.0 - 59754.141.1.702.3) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
0x11e228000 - 0x11e23ffff +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x11e260000 - 0x11e51bfff +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
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0x11ee8f000 - 0x11f57efff +QtGui (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtGui.framework/Versions/A/QtGui
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0x7fff38434000 - 0x7fff3855bfff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff3892e000 - 0x7fff389b4fff com.apple.coredav (1.0.1 - 889.0.0.4) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff389b5000 - 0x7fff38a0afff com.apple.ExchangeWebServices (8.0 - 814.110.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38a0b000 - 0x7fff38a4bfff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38b47000 - 0x7fff38b47fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff38d2d000 - 0x7fff38d65fff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff38d66000 - 0x7fff38d72fff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff38d73000 - 0x7fff38db6fff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff38db7000 - 0x7fff38dd6fff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff391fa000 - 0x7fff391fafff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff391fb000 - 0x7fff39202fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff39203000 - 0x7fff39211fff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff39212000 - 0x7fff39229fff libAccessibility.dylib (2885.49.1) /usr/lib/libAccessibility.dylib
0x7fff3bab8000 - 0x7fff3bc5ffff libFosl_dynamic.dylib (200) /usr/lib/libFosl_dynamic.dylib
0x7fff3bc60000 - 0x7fff3bc82fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bc83000 - 0x7fff3bd1afff com.apple.AirPlaySync (1.0 - 2780.10.4.1.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c8ab000 - 0x7fff3c92efff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3c92f000 - 0x7fff3c932fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3c933000 - 0x7fff3c936fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3ca2f000 - 0x7fff3ca2ffff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cbe9000 - 0x7fff3cc08fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cd55000 - 0x7fff3cdabfff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cdac000 - 0x7fff3cdc9fff com.apple.sidecar-core (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cdca000 - 0x7fff3cdcdfff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d1e5000 - 0x7fff3d1ebfff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d35c000 - 0x7fff3d373fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.19) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d526000 - 0x7fff3d531fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d546000 - 0x7fff3d558fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d559000 - 0x7fff3d55cfff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d575000 - 0x7fff3d6e4fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d6e5000 - 0x7fff3d940fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d941000 - 0x7fff3da57fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da58000 - 0x7fff3da69fff com.apple.sidecar-ui (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e08c000 - 0x7fff3e0eefff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e0ef000 - 0x7fff3e114fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e2f3000 - 0x7fff3e35ffff com.apple.Safari.Core (16611 - 16611.3.10.1.19) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e360000 - 0x7fff3e4c2fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e4c3000 - 0x7fff3e7a4fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e7d0000 - 0x7fff3e8f8fff com.apple.AnnotationKit (1.0 - 383.6.1) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e8f9000 - 0x7fff3ed99fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ed9a000 - 0x7fff3ee82fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fbc9000 - 0x7fff3fc46fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40d4d000 - 0x7fff40d7dfff libncurses.5.4.dylib (57.1.0.700.1) /usr/lib/libncurses.5.4.dylib
0x7fff40de2000 - 0x7fff40de5fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4120a000 - 0x7fff41228fff libCGInterfaces.dylib (544.6) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff428a8000 - 0x7fff43608fff libfaceCore.dylib (4.3.2) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43609000 - 0x7fff4371cfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff4371d000 - 0x7fff43735fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43736000 - 0x7fff43795fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43796000 - 0x7fff437affff com.apple.SafariFoundation (16611 - 16611.3.10.1.19) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff437b0000 - 0x7fff437b6fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff437b7000 - 0x7fff43a2afff com.apple.RawCamera.bundle (9.10.0 - 1450.3.1) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44293000 - 0x7fff44297fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45c0e000 - 0x7fff45c11fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff462fd000 - 0x7fff46308fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47932000 - 0x7fff47973fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff481c1000 - 0x7fff481dcfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff513c5000 - 0x7fff513f2fff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff513f3000 - 0x7fff5140dfff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff5140e000 - 0x7fff514adfff com.apple.Symbolication (12.5 - 64544.70.3) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff5169d000 - 0x7fff516a0fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53d35000 - 0x7fff53d6bfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55365000 - 0x7fff55368fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff60a34000 - 0x7fff610fbfff libclh.dylib (16.0.13) /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib
0x7fff610fc000 - 0x7fff61a0ffff com.apple.GeForceGLDriver (16.0.13 - 16.0.0) /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver
0x7fff61b0f000 - 0x7fff61b86fff com.apple.driver.AppleIntelHD5000GraphicsMTLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsMTLDriver
0x7fff63a6d000 - 0x7fff63c03fff com.apple.GeForceMTLDriver (16.0.13 - 16.0.0) /System/Library/Extensions/GeForceMTLDriver.bundle/Contents/MacOS/GeForceMTLDriver
0x7fff65a16000 - 0x7fff65f29fff com.apple.driver.AppleIntelHD5000GraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsGLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsGLDriver
0x7fff6945d000 - 0x7fff69461fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b8a8000 - 0x7fff6b8aefff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b8af000 - 0x7fff6b8b3fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b8b4000 - 0x7fff6b8c3fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b8c4000 - 0x7fff6b8c6fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b8c7000 - 0x7fff6b8cffff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b8d0000 - 0x7fff6b903fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6b904000 - 0x7fff6b940fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6b941000 - 0x7fff6bad4fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bad5000 - 0x7fff6badffff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bae0000 - 0x7fff6bc5dfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bc5e000 - 0x7fff6bc86fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6cf1f000 - 0x7fff6cf77fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e021000 - 0x7fff6e028fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e029000 - 0x7fff6e110fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f2a8000 - 0x7fff6f2b2fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6f696000 - 0x7fff6f6a8fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff739c6000 - 0x7fff739d1fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73be7000 - 0x7fff73bfffff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7750e000 - 0x7fff77515fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=20.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=20.5G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 1536K 12
Activity Tracing 256K 1
CG backing stores 4320K 12
CG image 564K 65
CoreAnimation 624K 79
CoreGraphics 16K 3
CoreUI image data 5188K 59
Foundation 48K 2
IOKit 23.3M 3
Kernel Alloc Once 8K 1
MALLOC 19.5G 987
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 1408K 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 136K 34
Stack 160.3M 35
Stack Guard 56.0M 1
VM_ALLOCATE 539.8M 248
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 30.9M 653
__DATA_CONST 44.4M 369
__DATA_DIRTY 1728K 221
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.9M 261
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 707.4M 641
__UNICODE 588K 1
mapped file 287.7M 66
shared memory 3020K 33
=========== ======= =======
TOTAL 22.2G 3816
TOTAL, minus reserved VM space 21.9G 3816
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 5L8R
5l8r title:
The structure of plant photosystem I super-complex at 2.6 angstrom resolution.
[more info...]
Chain information for 5l8r #1
---
Chain | Description | UniProt
1 | Lhca1 |
2 | Chlorophyll a-b binding protein, chloroplastic | Q41038_PEA 1-269
3 | Chlorophyll a-b binding protein 3, chloroplastic | CB23_PEA 1-275
4 | Chlorophyll a-b binding protein P4, chloroplastic | CB24_PEA 52-249
A | Photosystem I P700 chlorophyll a apoprotein A1 | PSAA_PEA 1-758
B | Photosystem I P700 chlorophyll a apoprotein A2 | A0A0F6NGI2_PEA 1-734
C | Photosystem I iron-sulfur center | PSAC_PEA 1-81
D | PsaD |
E | Putative uncharacterized protein | E1C9K6_PEA 66-129
F | Photosystem I reaction center subunit III | A0A0M3KL12_PEA 78-231
G | PsaG |
H | Photosystem I reaction center subunit VI | A0A0M3KL10_PEA 53-138
I | Photosystem I reaction center subunit VIII | PSAI_PEA 1-40
J | Photosystem I reaction center subunit IX | D5MAL3_PEA 1-42
K | Photosystem I reaction center subunit X psaK | E1C9L3_PEA 47-125
L | Putative uncharacterized protein | E1C9L1_PEA 54-210
Non-standard residues in 5l8r #1
---
BCR — β-carotene
CA — calcium ion
CHL — chlorophyll B
CL0 — chlorophyll A isomer
CLA — chlorophyll A
DGD — digalactosyl diacyl glycerol (DGDG)
LHG — 1,2-dipalmitoyl-phosphatidyl-glycerole
LMG — 1,2-distearoyl-monogalactosyl-diglyceride
LMT — dodecyl-β-D-maltoside
LUT — (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-β,β-carotene-3,3'-diol
((3R,3'R)-β,β-carotene-3,3'-diol, lutein)
PQN — phylloquinone (vitamin K1; 2-methyl-3-phytyl-1,4-naphthoquinone)
SF4 — iron/sulfur cluster
XAT — (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-
tetrahydro-β,β-carotene-3,3'-diol (violaxanthin)
ZEX —
(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol
> hide all
> show #1/1 cartoons
> set bgColor white
> style stick
Changed 37583 atom styles
> show #1/1:80,85,189,184
> lighting simple
> color @NH1,NH2 blue
> help color
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color /1 pink target c
> color #1 #d4b2b9ff
> undo
> color #1 #f9d1daff
> undo
> color #1 #fcdee8ff
> undo
> color #1 #99858aff
> undo
> color #1 #e6c8cfff
> lighting simple
> undo
> color /1 61966 target c
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /1 IEC61966 target c
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /1 #DA70D6 target c
> color /1 #DDAODD target c
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /1 #DDA0DD target c
> color :85,189@NH1,NH2 blue
> color :80,184@OE1,OE2 red
> color /1 #DDA0DD target c
> color /1 #DDA0DD target a
> color :85,189@NH1,NH2 blue
> color :80,184@OE1,OE2 red
> color /1 #DDA0DD target c
> show cartoons
> hide cartoons
> show #1/1 cartoons
> set bgColor white
> style stick
Changed 37583 atom styles
> show #1/1:80,85,189,184
> color /1 #DDA0DD target a
> color :85,189@NH1,NH2 blue
> color :80,184@OE1,OE2 red
> color /1 #DDA0DD target c
> color /1 #DDA0DD target a
> color :85,189@ blue
> color :80,184@ red
> color /1 #DDA0DD target c
> color /1 #DDA0DD target a
> color :85,189 blue
> color :80,184 red
> color /1 #DDA0DD target c
> lighting soft
> lighting full
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting full
> lighting soft
> lighting full
> save "/Users/Chris/ASU Dropbox/Christopher
> Gorski/9_Chris/JBC_review/eukaryotic_PSI_review/Figures/structure_figure/lhc_helix_interaction.png"
> width 1346 height 903 supersample 3 transparentBackground true
> help width
No help found for 'width'
> help stick
No help found for 'stick'
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> help atoms
No help found for 'atoms'
> help atom
No help found for 'atom'
> help show
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.
> preset "initial styles" sticks
Using preset: Initial Styles / Sticks
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> undo
> hide atoms
> show cartoons
> hide cartoons
> show #1/1 cartoons
> set bgColor white
> style stick
Changed 37583 atom styles
> show #1/1:80,85,189,184
> color /1 #DDA0DD target a
> color :85,189 blue
> color :80,184 red
> color /1 #DDA0DD target c
> lighting shadows true
> lighting flat
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> lighting simple
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting full
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting simple
> lighting soft
> lighting full
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> graphics silhouettes false
> graphics silhouettes true
> lighting full
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> ui tool show "Side View"
> style stick
Changed 37583 atom styles
> graphics silhouettes true
> lighting soft
> lighting simple
> lighting soft
> lighting full
> save "/Users/Chris/ASU Dropbox/Christopher
> Gorski/9_Chris/JBC_review/eukaryotic_PSI_review/Figures/structure_figure/lhc_helix_interaction.png"
> width 1346 height 903 supersample 3 transparentBackground true
> close
> open 7y5e
Summary of feedback from opening 7y5e fetched from pdb
---
warnings | Atom C14 has no neighbors to form bonds with according to residue template for CLA /AN:801
Atom C14 has no neighbors to form bonds with according to residue template for
CLA /A2:802
7y5e title:
In situ single-PBS-PSII-PSI-LHCs megacomplex. [more info...]
Chain information for 7y5e #1
---
Chain | Description | UniProt
12 1N | Chlorophyll a-b binding protein, chloroplastic | A0A5J4Z6J3_PORPP 49-222
16 1L 46 4L | CNT |
18 1C B5 B7 B9 BA BB BF BI BK BP CB CD CQ D5 D7 D9 DA DB DF DI DJ DK DM DP ED EQ F5 F7 F9 FA FB FF FI FJ FK FM FP GB GD GQ H5 H7 H9 HA HB HF HI HJ HK HM HP IB ID IQ J5 J7 J9 JA JF JI JJ JK JM JP KD KQ L5 L7 L9 LA LB LF LI LJ LK LM LP MB MD MQ N7 NA NB NF NJ NK NM NP O5 O9 OB OD OI OQ P1 P4 P7 PA PB PE PF PG PH PJ PK PM PO PP Q5 Q9 QB QD QI QQ R1 R4 R7 RA RB RE RF RG RH RJ RK RM RO RP S5 S9 SB SD SI SQ T1 T4 T7 TA TE TF TG TH TJ TK TM TO TP U5 U9 UD UI UQ V1 V4 V7 VA VB VE VF VG VH VJ VK VM VO VP W5 W9 WD WI WQ X7 XA XB XF XJ XK XM XP Y1 Y4 Y5 Y9 YB YD YE YG YH YI YO YQ ZB ZF ZJ ZK ZM a1 a4 aB aE aG aH aO bB bF bK c1 c4 cE cG cH cJ cM cO dB dF dK e1 e4 eB eE eG eH eJ eM eO fF fK g1 g4 gB gE gG gH gJ gM gO hF hK i1 i4 iE iG iH iJ iM iO jF jK k1 k4 kE kG kH kJ kM kO lF lK m1 m4 mE mG mH mJ mM mO nF nK pF pK q8 qC rF rK s8 sC tF tK u8 uC vF vK w8 wC y8 yC | B-phycoerythrin beta chain | PHEB_PORPP 1-177
22 2N | Chlorophyll a-b binding protein of LHCII type III, chloroplastic | P93450_PORPP 37-202
23 Z3 | Lrc4 | A0A5J4YTV6_PORPP 20-178
32 3N | Chlorophyll a-b binding protein, chloroplastic | A0A5J4YYC4_PORPP 42-210
33 a3 | LRC5 | A0A5J4Z2M2_PORPP 10-297
42 4N | Chlorophyll a-b binding protein 1B-21, chloroplastic | A0A5J4ZAY0_PORPP 37-208
43 b3 | FAS1 domain-containing protein | A0A5J4ZA95_PORPP 6-258
52 5N | Chlorophyll a-b binding protein 1B-21, chloroplastic | A0A5J4YSS5_PORPP 39-212
53 Y3 | LPP2 | A0A5J4Z365_PORPP -104-57 -100-61
62 6N | Chlorophyll a-b binding protein 1B-21, chloroplastic | A0A5J4YN76_PORPP 47-215
63 73 | Phycobiliprotein ApcE | A0A343KPB8_PORPP 1-879
72 7N | Fucoxanthin-chlorophyll a-c binding protein, chloroplastic | A0A5J4YKR2_PORPP 38-201
82 8N | RedCAP | A0A5J4YP51_PORPP 34-213
A1 A4 AD AE AG AH AO AQ Y7 YA | R-phycoerythrin gamma chain, chloroplastic | A0A5J4YX19_PORPP 9-298
A2 AN | PsaA | W0S1N1_PORPP 1-752
A3 C3 E3 G3 J3 K3 N3 P3 R3 T3 c3 e3 g3 i3 l3 m3 p3 r3 t3 v3 | Allophycocyanin alpha subunit | W0RYM0_PORPP 1-161
A5 A7 A9 AA AF AI AK AP BD BQ C5 C7 C9 CA CF CI CJ CK CM CP DD DQ E5 E7 E9 EA EF EI EJ EK EM EP FD FQ G5 G7 G9 GA GF GI GJ GK GM GP HD HQ I5 I7 I9 IA IF II IJ IK IM IP JB JD JQ K5 K7 K9 KA KF KI KJ KK KM KP LD LQ M7 MA MF MJ MK MM MP N5 N9 ND NI NQ O1 O4 O7 OA OE OF OG OH OJ OK OM OO OP P5 P9 PD PI PQ Q1 Q4 Q7 QA QE QF QG QH QJ QK QM QO QP R5 R9 RD RI RQ S1 S4 S7 SA SE SF SG SH SJ SK SM SO SP T5 T9 TB TD TI TQ U1 U4 U7 UA UE UF UG UH UJ UK UM UO UP V5 V9 VD VI VQ W1 W4 W7 WA WE WF WG WH WJ WK WM WO WP X5 X9 XD XI XQ YF YJ YK YM Z1 Z4 ZE ZG ZH ZO aF aJ aK aM b1 b4 bE bG bH bO cF cK d1 d4 dE dG dH dJ dM dO eF eK f1 f4 fE fG fH fJ fM fO gF gK h1 h4 hE hG hH hJ hM hO iF iK j1 j4 jE jG jH jJ jM jO kF kK l1 l4 lE lG lH lJ lM lO mF mK oF oK p8 pC qF qK r8 rC sF sK t8 tC uF uK v8 vC x8 xC z8 zC | Phycoerythrin alpha subunit | E2IH77_PORPP 1-164
A6 AL a6 aL | Photosystem II protein D1 | W0RZ08_PORPP 1-360
A8 AC a8 aC | LRH |
AB EB | Linker4 | A0A5J4YXP2_PORPP 287-424
AJ AM wF wK xF xK | R-phycoerythrin gamma chain, chloroplastic | A0A5J4YZM7_PORPP 11-283
B1 B4 BE BG BH BO | Phycobilisome rod-core linker polypeptide | W0RZ90_PORPP 1-232
B2 BN | Photosystem I P700 chlorophyll a apoprotein A2 | W0RYU6_PORPP 3-734
B3 D3 F3 H3 I3 L3 M3 O3 Q3 S3 U3 d3 f3 h3 j3 k3 n3 o3 q3 s3 u3 w3 | Allophycocyanin beta subunit | W0S279_PORPP 1-161
B6 BL b6 bL | Photosystem II CP47 reaction center protein | W0RZ84_PORPP 1-509
BJ BM yF yK | R-phycoerythrin gamma chain, chloroplastic | A0A5J4YZH3_PORPP 8-297
C1 C4 CE CG CH CO E1 E4 EE EG EH EO G1 G4 GE GG GH GO I1 I4 IE IG IH IO K1 K4 KE KG KH KO M1 M4 ME MG MH MO | C-phycocyanin alpha subunit | W0RYI4_PORPP 1-162
C2 CN | Photosystem I iron-sulfur center | W0S231_PORPP 1-81
C6 CL c6 cL | Photosystem II CP43 reaction center protein | W0RYK4_PORPP 1-473
D1 D4 DE DG DH DO F1 F4 FE FG FH FO H1 H4 HE HG HH HO J1 J4 JE JG JH JO L1 L4 LE LG LH LO N1 N4 NE NG NH NO | C-phycocyanin beta subunit | W0RZB2_PORPP 1-172
D2 DN | Photosystem I reaction center subunit II | W0RZ23_PORPP -2-139
D6 DL d6 dL | Photosystem II D2 protein | W0RYZ0_PORPP 2-352
E2 EN | Photosystem I reaction center subunit IV | W0RYG1_PORPP 1-61
E6 EL e6 eL | Cytochrome b559 subunit alpha | W0RYH5_PORPP 0-83
F2 FN | Photosystem I reaction center subunit III | W0RZ71_PORPP 1-185
F6 FL f6 fL | Cytochrome b559 subunit beta | W0S1X0_PORPP 2-45
G2 GN | Cytochrome c6 | W0S1L8_PORPP 7-110
G6 GL g6 gL | PSII_Pbs31 domain-containing protein | A0A5J4Z270_PORPP 1-213
H6 HL h6 hL | Photosystem II reaction center protein H | W0RYU5_PORPP 1-67
I2 IN | Photosystem I reaction center subunit VIII | W0RZ51_PORPP 1-37
I6 IL i6 iL | Photosystem II reaction center protein I | W0RYJ5_PORPP 1-38
J2 JN | Photosystem I reaction center subunit IX | W0RYG9_PORPP 1-42
J6 JL j6 jL | Photosystem II reaction center protein J | W0RYQ6_PORPP 2-40
K2 KN | Photosystem I reaction center subunit PsaK | W0RZ04_PORPP 1-70
K6 KL k6 kL | Photosystem II reaction center protein K | W0RZ28_PORPP 1-45
KB UB | CaRSPs1 | A0A5J4YJY8_PORPP 1-288
L2 LN | Photosystem I reaction center subunit XI | W0S1Z0_PORPP 3-142
L6 LL l6 lL | PsbL | W0RZ31_PORPP 0-37
M2 MN | Photosystem I reaction center subunit XII | W0S1Z9_PORPP 1-30
M5 M9 Z5 Z9 | R-phycoerythrin gamma chain, chloroplastic | A0A5J4YNU6_PORPP -34-298 -33-299
M6 ML m6 mL | PsbM | A0A5J4YYD7_PORPP -56-44
MI ZI | Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4Z323_PORPP 1-316
N2 NN | Ferredoxin | W0RYF9_PORPP 1-99
N6 NL n6 nL | Psb34 |
O2 ON | Photosystem I subunit O | A0A5J4YUC8_PORPP 46-137
O6 OL o6 oL | Oxygen-evolving enhancer protein | E5RPB3_PORPP -32-254
Q6 QL q6 qL | PsbQ' | A0A5J4Z679_PORPP 1-205
R2 RN | PsaR | A0A5J4YR43_PORPP 44-121
R6 RL r6 rL | Photosystem II protein Y | W0S1X5_PORPP 2-34
S6 SL | LPP1 |
T6 TL t6 tL | Photosystem II reaction center protein T | W0RYV0_PORPP 1-31
U6 UL u6 uL | PS II complex 12 kDa extrinsic protein | A0A5J4YLQ6_PORPP -46-103 -46-105
V3 x3 | Allophycocyanin gamma subunit | W0S1U6_PORPP 1-161
V6 VL v6 vL | Cytochrome c550 | W0RYZ6_PORPP -24-137
W3 y3 | Allophycocyanin beta 18 subunit | W0RZE2_PORPP 1-173
W6 WL w6 wL | PsbW |
WB cB | CaRSP2 | A0A5J4YX67_PORPP 1-327
X1 X4 XE XG XH XO | Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4YM59_PORPP 9-371
X3 z3 | Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core | A0A5J4YVZ2_PORPP 40-132
X6 XL x6 xL | Photosystem II reaction center X protein | W0RZ76_PORPP 3-41
Y6 YL y6 yL | Photosystem II reaction center protein Ycf12 | W0RZ91_PORPP 1-34
YP bP | Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4YMI8_PORPP -16-409
Z2 ZN | LPS1 |
Z6 ZL z6 zL | Photosystem II reaction center protein Z | W0RZ40_PORPP 1-62
bJ bM | Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod | A0A5J4YX63_PORPP -28-461
dD dQ | Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4Z162_PORPP 5-346
e7 eA | Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4Z7F4_PORPP -12-290
fB hB | FAS1 domain-containing protein | A0A5J4Z027_PORPP 0-287
zF zK | Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod | A0A5J4YI31_PORPP 1-498
Non-standard residues in 7y5e #1
---
3XQ — (2S)-2,3-dihydroxypropyl octadecanoate
BCR — β-carotene
BCT — bicarbonate ion
BGC — beta-D-glucopyranose (beta-D-glucose; D-glucose; glucose)
CL — chloride ion
CLA — chlorophyll A
CYC — phycocyanobilin
DGD — digalactosyl diacyl glycerol (DGDG)
FE — Fe (III) ion
FES — FE2/S2 (inorganic) cluster
GOL — glycerol (glycerin; propane-1,2,3-triol)
HEM — protoporphyrin IX containing Fe (HEME)
LHG — 1,2-dipalmitoyl-phosphatidyl-glycerole
LMG — 1,2-distearoyl-monogalactosyl-diglyceride
MEN — N-methyl asparagine
OEX — Ca-MN4-O5 cluster
PEB — phycoerythrobilin
PHO — pheophytin A
PL9 —
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone
(plastoquinone 9)
PQN — phylloquinone (vitamin K1; 2-methyl-3-phytyl-1,4-naphthoquinone)
PUB — phycourobilin
SF4 — iron/sulfur cluster
ZEX —
(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol
909 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> hide all
> transparency #1 90 target c
> color #1 grey
> graphics silhouettes false
> style #1 cartoon
Expected a keyword
> show
> /A7,A9,AA,AF,AI,AK,AP,A5,BQ,BD,C5,C7,C9,CA,CF,CI,CJ,CK,CP,DD,DQ,E5,E7,E9,EA,CM,EI,EF,EK,EJ,EM,EP,FD,FQ,G5,G7,GA,GF,GI,GJ,GK,GM,G9,HD,GP,I5,HQ,I7,I9,IA,IF,II,IJ,IM,IP,JB,JD,JQ,IK,K7,K5,KA,K9,KF,KI,KJ,KK,KM,KP,LD,MA,M7,MF,MJ,MK,MM,MP,N5,N9,LQ,NI,ND,O1,NQ,O4,O7,OA,OE,OF,OG,OJ,OK,OM,OO,OP,P5,P9,PD,OH,PQ,PI,Q4,Q1,Q7,QA,QE,QF,QG,QH,QJ,QM,QO,QP,R5,R9,RD,QK,RQ,RI,S1,S7,S4,SA,SE,SF,SG,SH,SJ,SK,SM,SP,T5,T9,TD,TB,TI,TQ,U1,U4,U7,UA,SO,UF,UE,UG,UJ,UH,UK,UM,UO,UP,V5,V9,VD,VQ,W1,W7,W4,WA,WE,WF,WG,WH,WJ,VI,WM,WK,WO,X5,WP,X9,XD,XI,XQ,YF,YJ,YK,YM,ZE,Z4,ZG,ZH,ZO,aF,aJ,aK,aM,b1,b4,Z1,bG,bE,bH,bO,cF,cK,d1,d4,dE,dG,dH,dJ,dM,eF,eK,f1,f4,fE,fG,fH,fJ,fM,dO,fO,gK,gF,h1,h4,hE,hG,hH,hJ,hM,hO,iF,iK,j1,j4,jG,jH,jJ,jM,jO,kF,kK,l1,l4,jE,lE,lH,lG,lJ,lM,lO,mF,mK,oF,oK,pC,p8,qF,qK,rC,r8,sF,sK,t8,tC,uF,uK,v8,vC,x8,xC,z8,zC,1C,18,B5,B7,B9,BA,BB,BF,BI,BP,CB,CD,CQ,D5,D7,D9,DA,BK,DF,DB,DJ,DI,DK,DP,DM,ED,EQ,F5,F7,F9,FA,FF,FI,FJ,FK,FM,FP,GB,GD,FB,H5,GQ,H9,H7,HB,HA,HF,HI,HJ,HK,HM,HP,ID,IQ,J5,J7,J9,JA,JF,IB,JI,JK,JJ,JP,JM,KD,KQ,L5,L7,L9,LA,LB,LJ,LI,LK,LM,LP,MB,MD,MQ,N7,LF,NB,NA,NJ,NF,NK,NM,NP,O5,O9,OB,OD,OQ,P1,P4,P7,PA,PB,PE,OI,PF,PH,PG,PK,PJ,PM,PO,PP,Q5,Q9,QB,QD,R1,QQ,R4,R7,RA,RB,RE,QI,RF,RH,RG,RK,RJ,RM,RO,RP,S5,S9,SB,SD,T1,SQ,T4,T7,TE,TA,TF,TG,TH,SI,TJ,TM,TK,TO,U5,TP,U9,UD,UI,UQ,V1,V4,VB,VA,VE,VF,VH,VG,VJ,VK,VM,VO,VP,W5,V7,W9,WI,WD,WQ,XA,X7,XB,XF,XJ,XK,XM,XP,Y1,Y4,YB,Y9,YD,YG,YE,YH,YI,YO,YQ,ZB,ZF,Y5,ZK,ZJ,ZM,a4,a1,aB,aE,aG,aH,aO,bB,bF,bK,c1,cE,cG,cH,cJ,cM,cO,dB,dF,dK,c4,e4,e1,eE,eB,eG,eH,eJ,eM,eO,fF,fK,g1,g4,gB,gE,gG,gH,gJ,gM,gO,hF,hK,i1,i4,iE,iG,gH,iJ,iH,iO,iM,jF,jK,k1,k4,kE,kG,kH,kJ,kO,lK,lF,m1,m4,mG,mE,mH,mJ,mM,mO,nF,nK,kM,pK,pF,qC,q8,rF,rK,s8,sC,tF,tK,u8,uC,vF,vK,w8,wC,y8,yC,A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA,AJ,AM,wF,wK,xF,xK,BJ,BM,yF,yK,M5,M9,Z5,Z9,C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO,D1,D4,DE,DG,DH,DO,F1,F4,FE,FG,FH,FO,H1,H4,HE,HG,HH,HO,J1,J4,JE,JG,JH,JO,L1,L4,LE,LG,LH,LO,N1,N4,NE,NG,NH,NO,A3,C3,E3,G3,J3,K3,N3,P3,R3,T3,c3,e3,g3,i3,l3,m3,p3,r3,t3,v3,V3,x3,W3,y3,73,63,23,Z3,AB,EB,BO,BH,BG,BE,B4,B1,X0,XH,XG,XE,X4,X1,ZI,MI,YP,bP,X3,z3,eA,e7,dQ,dD,zK,zF,bM,bJ
> cartoons
> lighting simple
> color
> /1C,18,B5,B7,B9,BA,BB,BF,BI,BP,CB,CD,CQ,D5,D7,D9,DA,BK,DF,DB,DJ,DI,DK,DP,DM,ED,EQ,F5,F7,F9,FA,FF,FI,FJ,FK,FM,FP,GB,GD,FB,H5,GQ,H9,H7,HB,HA,HF,HI,HJ,HK,HM,HP,ID,IQ,J5,J7,J9,JA,JF,IB,JI,JK,JJ,JP,JM,KD,KQ,L5,L7,L9,LA,LB,LJ,LI,LK,LM,LP,MB,MD,MQ,N7,LF,NB,NA,NJ,NF,NK,NM,NP,O5,O9,OB,OD,OQ,P1,P4,P7,PA,PB,PE,OI,PF,PH,PG,PK,PJ,PM,PO,PP,Q5,Q9,QB,QD,R1,QQ,R4,R7,RA,RB,RE,QI,RF,RH,RG,RK,RJ,RM,RO,RP,S5,S9,SB,SD,T1,SQ,T4,T7,TE,TA,TF,TG,TH,SI,TJ,TM,TK,TO,U5,TP,U9,UD,UI,UQ,V1,V4,VB,VA,VE,VF,VH,VG,VJ,VK,VM,VO,VP,W5,V7,W9,WI,WD,WQ,XA,X7,XB,XF,XJ,XK,XM,XP,Y1,Y4,YB,Y9,YD,YG,YE,YH,YI,YO,YQ,ZB,ZF,Y5,ZK,ZJ,ZM,a4,a1,aB,aE,aG,aH,aO,bB,bF,bK,c1,cE,cG,cH,cJ,cM,cO,dB,dF,dK,c4,e4,e1,eE,eB,eG,eH,eJ,eM,eO,fF,fK,g1,g4,gB,gE,gG,gH,gJ,gM,gO,hF,hK,i1,i4,iE,iG,gH,iJ,iH,iO,iM,jF,jK,k1,k4,kE,kG,kH,kJ,kO,lK,lF,m1,m4,mG,mE,mH,mJ,mM,mO,nF,nK,kM,pK,pF,qC,q8,rF,rK,s8,sC,tF,tK,u8,uC,vF,vK,w8,wC,y8,yC
> red
> color /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA tomato
> transparency /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA 0 target c
> color /AJ,AM,wF,wK,xF,xK tomato
> transparency /AJ,AM,wF,wK,xF,xK 0 target c
> color /BJ,BM,yF,yK tomato
> transparency /BJ,BM,yF,yK 0 target c
> color /M5,M9,Z5,Z9 tomato
> transparency /M5,M9,Z5,Z9 0 target c
> color
> /C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO
> royal blue
> transparency
> /1C,18,B5,B7,B9,BA,BB,BF,BI,BP,CB,CD,CQ,D5,D7,D9,DA,BK,DF,DB,DJ,DI,DK,DP,DM,ED,EQ,F5,F7,F9,FA,FF,FI,FJ,FK,FM,FP,GB,GD,FB,H5,GQ,H9,H7,HB,HA,HF,HI,HJ,HK,HM,HP,ID,IQ,J5,J7,J9,JA,JF,IB,JI,JK,JJ,JP,JM,KD,KQ,L5,L7,L9,LA,LB,LJ,LI,LK,LM,LP,MB,MD,MQ,N7,LF,NB,NA,NJ,NF,NK,NM,NP,O5,O9,OB,OD,OQ,P1,P4,P7,PA,PB,PE,OI,PF,PH,PG,PK,PJ,PM,PO,PP,Q5,Q9,QB,QD,R1,QQ,R4,R7,RA,RB,RE,QI,RF,RH,RG,RK,RJ,RM,RO,RP,S5,S9,SB,SD,T1,SQ,T4,T7,TE,TA,TF,TG,TH,SI,TJ,TM,TK,TO,U5,TP,U9,UD,UI,UQ,V1,V4,VB,VA,VE,VF,VH,VG,VJ,VK,VM,VO,VP,W5,V7,W9,WI,WD,WQ,XA,X7,XB,XF,XJ,XK,XM,XP,Y1,Y4,YB,Y9,YD,YG,YE,YH,YI,YO,YQ,ZB,ZF,Y5,ZK,ZJ,ZM,a4,a1,aB,aE,aG,aH,aO,bB,bF,bK,c1,cE,cG,cH,cJ,cM,cO,dB,dF,dK,c4,e4,e1,eE,eB,eG,eH,eJ,eM,eO,fF,fK,g1,g4,gB,gE,gG,gH,gJ,gM,gO,hF,hK,i1,i4,iE,iG,gH,iJ,iH,iO,iM,jF,jK,k1,k4,kE,kG,kH,kJ,kO,lK,lF,m1,m4,mG,mE,mH,mJ,mM,mO,nF,nK,kM,pK,pF,qC,q8,rF,rK,s8,sC,tF,tK,u8,uC,vF,vK,w8,wC,y8,yC
> 0 target c
> color /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA tomato
> transparency /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA 0 target c
> color /AJ,AM,wF,wK,xF,xK tomato
> transparency /AJ,AM,wF,wK,xF,xK 0 target c
> color /BJ,BM,yF,yK tomato
> transparency /BJ,BM,yF,yK 0 target c
> color /M5,M9,Z5,Z9 tomato
> transparency /M5,M9,Z5,Z9 0 target c
> color
> /C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO
> royal blue
> transparency
> /C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO
> 0 target c
> color
> /D1,D4,DE,DG,DH,DO,F1,F4,FE,FG,FH,FO,H1,H4,HE,HG,HH,HO,J1,J4,JE,JG,JH,JO,L1,L4,LE,LG,LH,LO,N1,N4,NE,NG,NH,NO
> steel blue
> transparency
> /D1,D4,DE,DG,DH,DO,F1,F4,FE,FG,FH,FO,H1,H4,HE,HG,HH,HO,J1,J4,JE,JG,JH,JO,L1,L4,LE,LG,LH,LO,N1,N4,NE,NG,NH,NO
> 0 target c
> color /A3,C3,E3,G3,J3,K3,N3,P3,R3,T3,c3,e3,g3,i3,l3,m3,p3,r3,t3,v3 medium
> sea green
> transparency
> /A3,C3,E3,G3,J3,K3,N3,P3,R3,T3,c3,e3,g3,i3,l3,m3,p3,r3,t3,v3,B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3,V3,x3,W3,y3
> 0 target c
> color /B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3
> dark sea green
> transparency
> /B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3 0 target
> c
> color /V3,x3 tomato
> transparency /V3,x3 0 target c
> color /W3,y3 dark green
> transparency /W3,y3 0 target c
> color /73,63 forest green
> transparency /73,63 0 target c
> color
> /A7,A9,AA,AF,AI,AK,AP,A5,BQ,BD,C5,C7,C9,CA,CF,CI,CJ,CK,CP,DD,DQ,E5,E7,E9,EA,CM,EI,EF,EK,EJ,EM,EP,FD,FQ,G5,G7,GA,GF,GI,GJ,GK,GM,G9,HD,GP,I5,HQ,I7,I9,IA,IF,II,IJ,IM,IP,JB,JD,JQ,IK,K7,K5,KA,K9,KF,KI,KJ,KK,KM,KP,LD,MA,M7,MF,MJ,MK,MM,MP,N5,N9,LQ,NI,ND,O1,NQ,O4,O7,OA,OE,OF,OG,OJ,OK,OM,OO,OP,P5,P9,PD,OH,PQ,PI,Q4,Q1,Q7,QA,QE,QF,QG,QH,QJ,QM,QO,QP,R5,R9,RD,QK,RQ,RI,S1,S7,S4,SA,SE,SF,SG,SH,SJ,SK,SM,SP,T5,T9,TD,TB,TI,TQ,U1,U4,U7,UA,SO,UF,UE,UG,UJ,UH,UK,UM,UO,UP,V5,V9,VD,VQ,W1,W7,W4,WA,WE,WF,WG,WH,WJ,VI,WM,WK,WO,X5,WP,X9,XD,XI,XQ,YF,YJ,YK,YM,ZE,Z4,ZG,ZH,ZO,aF,aJ,aK,aM,b1,b4,Z1,bG,bE,bH,bO,cF,cK,d1,d4,dE,dG,dH,dJ,dM,eF,eK,f1,f4,fE,fG,fH,fJ,fM,dO,fO,gK,gF,h1,h4,hE,hG,hH,hJ,hM,hO,iF,iK,j1,j4,jG,jH,jJ,jM,jO,kF,kK,l1,l4,jE,lE,lH,lG,lJ,lM,lO,mF,mK,oF,oK,pC,p8,qF,qK,rC,r8,sF,sK,t8,tC,uF,uK,v8,vC,x8,xC,z8,zC
> maroon
> transparency
> /A7,A9,AA,AF,AI,AK,AP,A5,BQ,BD,C5,C7,C9,CA,CF,CI,CJ,CK,CP,DD,DQ,E5,E7,E9,EA,CM,EI,EF,EK,EJ,EM,EP,FD,FQ,G5,G7,GA,GF,GI,GJ,GK,GM,G9,HD,GP,I5,HQ,I7,I9,IA,IF,II,IJ,IM,IP,JB,JD,JQ,IK,K7,K5,KA,K9,KF,KI,KJ,KK,KM,KP,LD,MA,M7,MF,MJ,MK,MM,MP,N5,N9,LQ,NI,ND,O1,NQ,O4,O7,OA,OE,OF,OG,OJ,OK,OM,OO,OP,P5,P9,PD,OH,PQ,PI,Q4,Q1,Q7,QA,QE,QF,QG,QH,QJ,QM,QO,QP,R5,R9,RD,QK,RQ,RI,S1,S7,S4,SA,SE,SF,SG,SH,SJ,SK,SM,SP,T5,T9,TD,TB,TI,TQ,U1,U4,U7,UA,SO,UF,UE,UG,UJ,UH,UK,UM,UO,UP,V5,V9,VD,VQ,W1,W7,W4,WA,WE,WF,WG,WH,WJ,VI,WM,WK,WO,X5,WP,X9,XD,XI,XQ,YF,YJ,YK,YM,ZE,Z4,ZG,ZH,ZO,aF,aJ,aK,aM,b1,b4,Z1,bG,bE,bH,bO,cF,cK,d1,d4,dE,dG,dH,dJ,dM,eF,eK,f1,f4,fE,fG,fH,fJ,fM,dO,fO,gK,gF,h1,h4,hE,hG,hH,hJ,hM,hO,iF,iK,j1,j4,jG,jH,jJ,jM,jO,kF,kK,l1,l4,jE,lE,lH,lG,lJ,lM,lO,mF,mK,oF,oK,pC,p8,qF,qK,rC,r8,sF,sK,t8,tC,uF,uK,v8,vC,x8,xC,z8,zC
> 0 target c
> color
> /1C,18,B5,B7,B9,BA,BB,BF,BI,BP,CB,CD,CQ,D5,D7,D9,DA,BK,DF,DB,DJ,DI,DK,DP,DM,ED,EQ,F5,F7,F9,FA,FF,FI,FJ,FK,FM,FP,GB,GD,FB,H5,GQ,H9,H7,HB,HA,HF,HI,HJ,HK,HM,HP,ID,IQ,J5,J7,J9,JA,JF,IB,JI,JK,JJ,JP,JM,KD,KQ,L5,L7,L9,LA,LB,LJ,LI,LK,LM,LP,MB,MD,MQ,N7,LF,NB,NA,NJ,NF,NK,NM,NP,O5,O9,OB,OD,OQ,P1,P4,P7,PA,PB,PE,OI,PF,PH,PG,PK,PJ,PM,PO,PP,Q5,Q9,QB,QD,R1,QQ,R4,R7,RA,RB,RE,QI,RF,RH,RG,RK,RJ,RM,RO,RP,S5,S9,SB,SD,T1,SQ,T4,T7,TE,TA,TF,TG,TH,SI,TJ,TM,TK,TO,U5,TP,U9,UD,UI,UQ,V1,V4,VB,VA,VE,VF,VH,VG,VJ,VK,VM,VO,VP,W5,V7,W9,WI,WD,WQ,XA,X7,XB,XF,XJ,XK,XM,XP,Y1,Y4,YB,Y9,YD,YG,YE,YH,YI,YO,YQ,ZB,ZF,Y5,ZK,ZJ,ZM,a4,a1,aB,aE,aG,aH,aO,bB,bF,bK,c1,cE,cG,cH,cJ,cM,cO,dB,dF,dK,c4,e4,e1,eE,eB,eG,eH,eJ,eM,eO,fF,fK,g1,g4,gB,gE,gG,gH,gJ,gM,gO,hF,hK,i1,i4,iE,iG,gH,iJ,iH,iO,iM,jF,jK,k1,k4,kE,kG,kH,kJ,kO,lK,lF,m1,m4,mG,mE,mH,mJ,mM,mO,nF,nK,kM,pK,pF,qC,q8,rF,rK,s8,sC,tF,tK,u8,uC,vF,vK,w8,wC,y8,yC
> red
> transparency
> /1C,18,B5,B7,B9,BA,BB,BF,BI,BP,CB,CD,CQ,D5,D7,D9,DA,BK,DF,DB,DJ,DI,DK,DP,DM,ED,EQ,F5,F7,F9,FA,FF,FI,FJ,FK,FM,FP,GB,GD,FB,H5,GQ,H9,H7,HB,HA,HF,HI,HJ,HK,HM,HP,ID,IQ,J5,J7,J9,JA,JF,IB,JI,JK,JJ,JP,JM,KD,KQ,L5,L7,L9,LA,LB,LJ,LI,LK,LM,LP,MB,MD,MQ,N7,LF,NB,NA,NJ,NF,NK,NM,NP,O5,O9,OB,OD,OQ,P1,P4,P7,PA,PB,PE,OI,PF,PH,PG,PK,PJ,PM,PO,PP,Q5,Q9,QB,QD,R1,QQ,R4,R7,RA,RB,RE,QI,RF,RH,RG,RK,RJ,RM,RO,RP,S5,S9,SB,SD,T1,SQ,T4,T7,TE,TA,TF,TG,TH,SI,TJ,TM,TK,TO,U5,TP,U9,UD,UI,UQ,V1,V4,VB,VA,VE,VF,VH,VG,VJ,VK,VM,VO,VP,W5,V7,W9,WI,WD,WQ,XA,X7,XB,XF,XJ,XK,XM,XP,Y1,Y4,YB,Y9,YD,YG,YE,YH,YI,YO,YQ,ZB,ZF,Y5,ZK,ZJ,ZM,a4,a1,aB,aE,aG,aH,aO,bB,bF,bK,c1,cE,cG,cH,cJ,cM,cO,dB,dF,dK,c4,e4,e1,eE,eB,eG,eH,eJ,eM,eO,fF,fK,g1,g4,gB,gE,gG,gH,gJ,gM,gO,hF,hK,i1,i4,iE,iG,gH,iJ,iH,iO,iM,jF,jK,k1,k4,kE,kG,kH,kJ,kO,lK,lF,m1,m4,mG,mE,mH,mJ,mM,mO,nF,nK,kM,pK,pF,qC,q8,rF,rK,s8,sC,tF,tK,u8,uC,vF,vK,w8,wC,y8,yC
> 0 target c
> color /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA tomato
> transparency /A1,A4,AD,AE,AG,AH,A0,AQ,Y7,YA 0 target c
> color /AJ,AM,wF,wK,xF,xK tomato
> transparency /AJ,AM,wF,wK,xF,xK 0 target c
> color /BJ,BM,yF,yK tomato
> transparency /BJ,BM,yF,yK 0 target c
> color /M5,M9,Z5,Z9 tomato
> transparency /M5,M9,Z5,Z9 0 target c
> color
> /C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO
> royal blue
> transparency
> /C1,C4,CE,CG,CH,CO,E1,E4,EE,EG,EH,EO,G1,G4,GE,GG,GH,GO,I1,I4,IE,IG,IH,IO,K1,K4,KE,KG,KH,KO,M1,M4,ME,MG,MH,MO
> 0 target c
> color
> /D1,D4,DE,DG,DH,DO,F1,F4,FE,FG,FH,FO,H1,H4,HE,HG,HH,HO,J1,J4,JE,JG,JH,JO,L1,L4,LE,LG,LH,LO,N1,N4,NE,NG,NH,NO
> steel blue
> transparency
> /D1,D4,DE,DG,DH,DO,F1,F4,FE,FG,FH,FO,H1,H4,HE,HG,HH,HO,J1,J4,JE,JG,JH,JO,L1,L4,LE,LG,LH,LO,N1,N4,NE,NG,NH,NO
> 0 target c
> color /A3,C3,E3,G3,J3,K3,N3,P3,R3,T3,c3,e3,g3,i3,l3,m3,p3,r3,t3,v3 medium
> sea green
> transparency
> /A3,C3,E3,G3,J3,K3,N3,P3,R3,T3,c3,e3,g3,i3,l3,m3,p3,r3,t3,v3,B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3,V3,x3,W3,y3
> 0 target c
> color /B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3
> dark sea green
> transparency
> /B3,D3,F3,H3,I3,L3,M3,O3,Q3,S3,U3,d3,f3,h3,j3,k3,n3,o3,q3,s3,u3,w3 0 target
> c
> color /V3,x3 tomato
> transparency /V3,x3 0 target c
> color /W3,y3 dark green
> transparency /W3,y3 0 target c
> color /73,63 forest green
> transparency /73,63 0 target c
> lighting flat
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting flat
> lighting soft
> lighting simple
> lighting flat
> lighting simple
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> save /Users/Chris/Desktop/image2.png supersample 3
> save "/Users/Chris/ASU Dropbox/Christopher
> Gorski/9_Chris/JBC_review/eukaryotic_PSI_review/Figures/structure_figure/PBS.png"
> width 1346 height 903 supersample 3 transparentBackground true
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 NVIDIA-16.0.13
OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 478.0.0.0.0
SMC Version (system): 2.19f12
Software:
System Software Overview:
System Version: macOS 11.7.10 (20G1427)
Kernel Version: Darwin 20.6.0
Time since boot: 15 days 5:13
Graphics/Displays:
Intel Iris Pro:
Chipset Model: Intel Iris Pro
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0d26
Revision ID: 0x0008
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
NVIDIA GeForce GT 750M:
Chipset Model: NVIDIA GeForce GT 750M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x0fe9
Revision ID: 0x00a2
ROM Revision: 3776
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2717H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: YKNFG69HBB1S
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 11 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 11 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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