Could not instantiate StructureSeq.structure

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-4.18.0-553.5.1.el8_10.x86_64-x86_64-with-glibc2.28
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007f14f38e4740 (most recent call first):
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 91 in get_prop
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 1255 in _changes_cb
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 1069 in proxy_handler
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/changes.py", line 54 in check_for_changes
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/__init__.py", line 77 in 
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3318 in command_trigger
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/contextlib.py", line 144 in __exit__
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3203 in run
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/color_key/tool.py", line 225 in delete
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/color_key/tool.py", line 308 in _key_closed
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/color_key/model.py", line 105 in delete
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/models.py", line 1010 in close
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/models.py", line 676 in reset_state
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/session.py", line 552 in reset
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/std_commands/close.py", line 71 in close_session
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3213 in run
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 806 in file_close_cb
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 1156 in 
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
  File "/dls_sw/apps/EM/chimerax_industry/1.8/rhel8/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, lxml._elementpath, lxml.etree, chimerax.map._map, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PIL._imagingmath, PIL._webp, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 62)
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /dls/industrial/cryoem/Staff/kmani/HMG-
> CoA/EMDB_deposition/asymmetric_model_deposition/figures_revised/Fig2/lip_refined_expanded.pdb
> /dls/industrial/cryoem/Staff/kmani/HMG-
> CoA/EMDB_deposition/asymmetric_model_deposition/figures_revised/Fig2/1hwk_align2lip.pdb

Chain information for lip_refined_expanded.pdb #1  
---  
Chain | Description  
A B C D | No description available  
  
1hwk_align2lip.pdb title:  
Complex of the catalytic portion of human HMG-coa reductase with atorvastatin
[more info...]  
  
Chain information for 1hwk_align2lip.pdb #2  
---  
Chain | Description | UniProt  
A B C D | HMG-coa reductase | HMDH_HUMAN 426-888  
  
Non-standard residues in 1hwk_align2lip.pdb #2  
---  
117 — 7-[2-(4-fluoro-phenyl)-5-isopropyl-3-phenyl-4-phenylcarbamoyl-
pyrrol-1-yl]- 3,5-dihydroxy-heptanoicacid (atorvastatin)  
ADP — adenosine-5'-diphosphate  
  

> set bgColor white

> hide atoms

> hide #!2 models

> show #!2 models

> hide #1 models

> show #1 models

> matchmaker #2/A,D,B,C to #1/A,B,C,D pairing ss showAlignment true

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker lip_refined_expanded.pdb, chain A (#1) with 1hwk_align2lip.pdb,
chain A (#2), sequence alignment score = 2127.9  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: lip_refined_expanded.pdb #1/A,
1hwk_align2lip.pdb #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
Matchmaker lip_refined_expanded.pdb, chain B (#1) with 1hwk_align2lip.pdb,
chain D (#2), sequence alignment score = 2070.3  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: lip_refined_expanded.pdb #1/B,
1hwk_align2lip.pdb #2/D  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
Matchmaker lip_refined_expanded.pdb, chain C (#1) with 1hwk_align2lip.pdb,
chain B (#2), sequence alignment score = 2103.3  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3: lip_refined_expanded.pdb #1/C,
1hwk_align2lip.pdb #2/B  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
Matchmaker lip_refined_expanded.pdb, chain D (#1) with 1hwk_align2lip.pdb,
chain C (#2), sequence alignment score = 2089.5  
Alignment identifier is 4  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4  
Hiding conservation header for alignment 4  
Chains used in RMSD evaluation for alignment 4: lip_refined_expanded.pdb #1/D,
1hwk_align2lip.pdb #2/C  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4  
RMSD between 1559 pruned atom pairs is 0.390 angstroms; (across all 1587
pairs: 0.606)  
  

> ui tool show "Render/Select by Attribute"

> hide #!2 models

> color byattribute r:seq_rmsd #1 target absc palette
> 0.01,blue:0.5,white:3,red

12768 atoms, 1696 residues, atom seq_rmsd range 0.0159 to 7.01  

> color byattribute r:seq_rmsd #1 target absc palette
> 0.01,blue:0.5,white:3,red noValueColor grey

12768 atoms, 1696 residues, atom seq_rmsd range 0.0159 to 7.01  

> color byattribute r:seq_rmsd #1 target absc palette
> 0.01,blue:0.5,white:3,red noValueColor #4e9a06

12768 atoms, 1696 residues, atom seq_rmsd range 0.0159 to 7.01  

> key blue-white-red :0.01 :0.50 :3.00 showTool true

> ui mousemode right "color key"

> key size 0.25000,0.04000

> key size 0.25000,0.03000

> key size 0.25000,0.02000

> key size 0.25000,0.01000

> key size 0.26000,0.01000

> key size 0.27000,0.01000

> key size 0.28000,0.01000

> key size 0.29000,0.01000

> key size 0.30000,0.01000

> key size 0.31000,0.01000

Key is partially or completely offscreen  

> key size 0.32000,0.01000

Key is partially or completely offscreen  

> key size 0.33000,0.01000

Key is partially or completely offscreen  

> key size 0.34000,0.01000

Key is partially or completely offscreen  

> key size 0.35000,0.01000

Key is partially or completely offscreen  

> key size 0.36000,0.01000

Key is partially or completely offscreen  

> key size 0.37000,0.01000

Key is partially or completely offscreen  

> key size 0.38000,0.01000

Key is partially or completely offscreen  

> key size 0.39000,0.01000

Key is partially or completely offscreen  

> key size 0.40000,0.01000

Key is partially or completely offscreen  

> key size 0.41000,0.01000

Key is partially or completely offscreen  

> key size 0.42000,0.01000

Key is partially or completely offscreen  

> key size 0.43000,0.01000

Key is partially or completely offscreen  

> key size 0.44000,0.01000

Key is partially or completely offscreen  

> key pos 0.69000,0.08000

Key is partially or completely offscreen  

> key pos 0.68000,0.08000

Key is partially or completely offscreen  

> key pos 0.67000,0.08000

Key is partially or completely offscreen  

> key pos 0.66000,0.08000

Key is partially or completely offscreen  

> key pos 0.65000,0.08000

Key is partially or completely offscreen  

> key pos 0.64000,0.08000

Key is partially or completely offscreen  

> key pos 0.63000,0.08000

Key is partially or completely offscreen  

> key pos 0.62000,0.08000

Key is partially or completely offscreen  

> key pos 0.61000,0.08000

Key is partially or completely offscreen  

> key pos 0.60000,0.08000

Key is partially or completely offscreen  

> key pos 0.59000,0.08000

Key is partially or completely offscreen  

> key pos 0.58000,0.08000

Key is partially or completely offscreen  

> key pos 0.57000,0.08000

Key is partially or completely offscreen  

> key pos 0.56000,0.08000

> key pos 0.55000,0.08000

> key pos 0.54000,0.08000

> key pos 0.53000,0.08000

> key numericLabelSpacing equal

> key pos 0.52000,0.08000

> key pos 0.51000,0.08000

> key pos 0.50000,0.08000

> key pos 0.51000,0.08000

> key pos 0.52000,0.08000

> key pos 0.53000,0.08000

> key pos 0.54000,0.08000

> key pos 0.55000,0.08000

> key pos 0.56000,0.08000

> key pos 0.55000,0.08000

> key pos 0.54000,0.08000

> key pos 0.53000,0.08000

> key pos 0.52000,0.08000

> key size 0.43000,0.01000

> key size 0.42000,0.01000

> key size 0.41000,0.01000

> key size 0.40000,0.01000

> key size 0.39000,0.01000

> key size 0.38000,0.01000

> key size 0.37000,0.01000

> key size 0.36000,0.01000

> key size 0.35000,0.01000

> key size 0.34000,0.01000

> key size 0.33000,0.01000

> key size 0.32000,0.01000

> key size 0.31000,0.01000

> key size 0.30000,0.01000

> color byattribute r:seq_rmsd #1 target absc palette
> 0.01,blue:0.5,white:2,red noValueColor #4e9a06

12768 atoms, 1696 residues, atom seq_rmsd range 0.0159 to 7.01  

> color byattribute r:seq_rmsd #1 target absc palette
> 0.01,blue:0.5,white:2,red noValueColor #555753

12768 atoms, 1696 residues, atom seq_rmsd range 0.0159 to 7.01  

> key blue-white-red :0.01 :0.50 :2.00 showTool true

> key numericLabelSpacing proportional

> key pos 0.593189,0.0602632

> key bold true

> lighting simple

> cartoon style (#1,3 & coil) xsection oval

> cartoon style #1,3 xsection barbell modeHelix default

> lighting simple

> save
> ../Fig2/fig2b_1hwk2lip_colorlip_Calpha_show_withoutlip_lightingSimple.tiff
> format tiff width 1000 height 750 supersample 6

> key blue-white-red :0.01 :0.5 :2.00

> key blue-white-red :0.01 :0.5 :2.0

> key blue-white-red :0.01 :0.5 :2.

> key blue-white-red :0.01 :0.5 :2

> save
> ../Fig2/fig2b_1hwk2lip_colorlip_Calpha_show_withoutlip_lightingSimple.tiff
> format tiff width 1000 height 750 supersample 6

> save /dls/industrial/cryoem/Staff/kmani/HMG-
> CoA/EMDB_deposition/asymmetric_model_deposition/figures_revised/Fig2/Fig2b_chimerax_session.cxs

> close session

> ui mousemode right translate


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 545.23.08
OpenGL renderer: NVIDIA GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_GB.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=gnome-custom-session
XDG_SESSION_DESKTOP=gnome-custom-session
XDG_CURRENT_DESKTOP=GNOME
DISPLAY=:1
Manufacturer: Supermicro
Model: Super Server
OS: Red Hat Enterprise Linux 8.10 Ootpa
Architecture: 64bit ELF
Virtual Machine: none
CPU: 4 Intel(R) Core(TM) i7-6700 CPU @ 3.40GHz
Cache Size: 8192 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           62Gi       6.5Gi        34Gi       1.5Gi        21Gi        53Gi
	Swap:         8.0Gi          0B       8.0Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104 [GeForce GTX 1080] [10de:1b80] (rev a1)	
	Subsystem: NVIDIA Corporation Device [10de:119e]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    distro: 1.9.0
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11