Timeline



Jun 15, 2021:

4:54 PM Ticket #4081 (Sequence Viewer assoc dialog incorrectly says not associated) closed by pett
fixed: If no chains are chosen on the left, the association menu is now …
4:47 PM Ticket #4776 (Cannot save image to public desktop) closed by Tom Goddard
nonchimerax: You used the Snapshot toolbar icon which saves an image to the desktop …
4:31 PM Ticket #4775 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 1) closed by Tom Goddard
nonchimerax: Adjusting volume threshold than crashed in OpenGL swapBuffers call. …
3:42 PM Ticket #4772 (PDBQT file: list index out of range) closed by pett
fixed: Hi Ana, Thanks for the example file. I have improved the .pdbqt …
3:15 PM Ticket #4776 (Cannot save image to public desktop) created by joelcrane@…
[…]
3:12 PM Ticket #4775 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 1) created by chimerax-bug-report@…
[…]
9:37 AM 2021-6-17 edited by Tom Goddard
(diff)
9:36 AM 2021-6-17 edited by Tom Goddard
(diff)
9:35 AM 2021-6-17 edited by Tom Goddard
(diff)
9:35 AM 2021-6-17 created by Tom Goddard
9:33 AM DeveloperMeetings edited by Tom Goddard
(diff)
4:39 AM Ticket #4774 (Crash hitting "play" button) created by g.marini@…
[…]

Jun 14, 2021:

1:15 PM Ticket #4767 (Coulombic: can't invert matrix) closed by pett
fixed: Don't try for coplanar positioning if the points involved are collinear.
10:53 AM Ticket #4768 (Silhouette artifacts on MacBookPro16,2) closed by Tom Goddard
duplicate: The wrong silhouette edges you see are cause by an Apple graphics …
10:42 AM Ticket #4771 (4v88: acceptor has no neighbors) closed by pett
fixed: Hi Disha, Thanks for reporting this problem. The missing phosphorus …
10:39 AM Ticket #4773 (Make resfit show altlocs) created by winston@…
From discussion on ChimeraX mailing list …
9:45 AM Ticket #4769 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
duplicate
9:23 AM Ticket #4772 (PDBQT file: list index out of range) created by ana.dolinar@…
[…] 2yjb_ZnPth_out.pdbqt
5:39 AM Ticket #4771 (4v88: acceptor has no neighbors) created by disha-gajanan.hiregange@…
[…]
2:12 AM Ticket #4770 (stops working) created by rahulsng@…
[…]

Jun 13, 2021:

8:02 AM Ticket #4769 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
6:49 AM Ticket #4768 (Silhouette artifacts on MacBookPro16,2) created by benjamin.buchmuller@…
[…] img.png

Jun 12, 2021:

11:13 AM Ticket #4767 (Coulombic: can't invert matrix) created by chimerax-bug-report@…
[…]

Jun 11, 2021:

5:28 PM Ticket #4766 (Structure positions is None (Segger holding ref to dead Structure)) closed by Tom Goddard
fixed: Fixed in tomorrow's daily build. The ChimeraX error saving a session …
2:30 PM Ticket #4766 (Structure positions is None (Segger holding ref to dead Structure)) created by nikhil.jain@…
[…]
1:51 PM Ticket #4765 (RFE: command to list missing and partially missing residues) created by Elaine Meng
Would be nice to have a command to list the missing residues and …
12:48 PM Ticket #4764 (Visualize missing parts of an atomic model) created by Tom Goddard
It would be pretty nice to have a toolbar button that shows all the …
8:52 AM Ticket #4761 (Unknown crash) closed by pett
can't reproduce
5:37 AM Ticket #4763 (H-bonds: acceptor not bonded to any atoms) created by disha-gajanan.hiregange@…
[…]

Jun 10, 2021:

9:53 PM Ticket #4762 (Install PyPi packages with a ChimeraX command) created by Tom Goddard
For developers writing ChimeraX Python code it would be convenient if …
7:09 PM Dev2021-6-10 edited by Tom Goddard
(diff)
7:09 PM 2021-6-10 edited by Tom Goddard
(diff)
6:13 PM Ticket #4761 (Unknown crash) created by chimerax-bug-report@…
[…]
3:24 PM Ticket #4760 (swapaa to GLY: Cannot identify backbone) created by goddard@…
[…]
2:39 PM Ticket #4725 (Sample bundle needs updating) closed by pett
fixed: Pointed the script to a local clone of the repository.
9:54 AM Ticket #4758 (Crash computing surface cap) closed by Tom Goddard
duplicate: I am surprised to see 3 reports of this clip cap computation crash in …
9:45 AM Ticket #4757 (Graphics crash, macOS 10.14.6, Geforce GT 750M) closed by Tom Goddard
nonchimerax: Mac graphics driver crash Graphics hardware encountered an error and …
8:37 AM Ticket #4759 (dssp unexpectedly slow) created by pett
[…]
2:09 AM Ticket #4758 (Crash computing surface cap) created by chimerax-bug-report@…
[…]

Jun 9, 2021:

3:00 PM Ticket #4757 (Graphics crash, macOS 10.14.6, Geforce GT 750M) created by chimerax-bug-report@…
[…]
10:37 AM Ticket #4755 (wrapped C/C++ object of type QScreen has been deleted) closed by Tom Goddard
duplicate: I fixed this about a month ago, bug #4583. The fix is in the ChimeraX …
8:30 AM Ticket #4756 ("incomplete quoted text" ... parsing error?) created by Elaine Meng
After setup commands: open 2gbp open 2fw0 mm #2 to #1 morph #1,​2
8:10 AM Ticket #4755 (wrapped C/C++ object of type QScreen has been deleted) created by Rebecca.Spies@…
[…]
7:23 AM Ticket #4754 (bz2 missing) created by Tristan Croll
[…]
5:56 AM Ticket #4753 (Tolman cone angle not implemented for tridentate or more ligands) created by aishen@…
[…]
5:37 AM Ticket #4752 (Better write-permission error handling) created by chimerax-bug-report@…
[…]

Jun 8, 2021:

6:03 PM Ticket #4560 (selected_atoms not current) closed by pett
fixed: I guess I'll assume it worked. Feel free to reopen if it's still a …
5:54 PM Ticket #4688 (Unknown crash) closed by pett
nonchimerax: Sorry, been a couple of crazy weeks around here. It seems to be a …
4:39 PM Ticket #4751 (Align trajectory frames) created by eackad@…
per summary (along with many other MD enhancements)
4:38 PM Ticket #4750 (Exclude parts of model when reading MD coordinates) created by eackad@…
A way to select only some of the elements to be loaded (protein only, …
4:36 PM Ticket #4749 (Specify first, last, skip when reading MD frames) created by eackad@…
per summary
3:20 PM Ticket #4748 (execute command when models opened) created by olibclarke@…
ChimeraX could have a "New Models" settings category, with subsections …
12:02 PM Ticket #4747 (2D arrow drag update: self._positions is None) created by chimerax-bug-report@…
[…]
10:44 AM Ticket #4728 (AddH: 'Structure' object has no attribute 'num_coord_sets') closed by pett
fixed: Fix available in next daily build
10:16 AM Dev2021-6-10 edited by pett
(diff)
10:03 AM 2021-6-10 created by Tom Goddard
10:01 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:53 AM Ticket #4746 (Crash in compute_cap) closed by Tom Goddard
can't reproduce: This ChimeraX crash was computing the cap on holes of a surface when …
9:43 AM Ticket #4743 (Truncated APBS *.dx file) closed by Tom Goddard
not a bug: The error message says SyntaxError: Too few data values in …
9:39 AM Ticket #4745 (Crash hiding(?) Rapid Access on Windows 7) closed by Tom Goddard
nonchimerax: There have been many reports of crashes showing rapid access at …
9:37 AM Ticket #4746 (Crash in compute_cap) created by stachowski.7@…
[…]
8:59 AM Ticket #4744 (Unknown error) closed by pett
can't reproduce
8:50 AM Ticket #4741 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by pett
duplicate
7:08 AM Ticket #4745 (Crash hiding(?) Rapid Access on Windows 7) created by chimerax-bug-report@…
[…]
3:43 AM Ticket #4744 (Unknown error) created by chimerax-bug-report@…
[…]
1:50 AM Ticket #4743 (Truncated APBS *.dx file) created by minghao.chen@…
[…] IMG_9180.HEIC

Jun 7, 2021:

10:47 PM Ticket #4742 (Crash restoring session) created by disha-gajanan.hiregange@…
[…]
9:33 PM Ticket #4741 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by chimerax-bug-report@…
[…]
9:31 PM Ticket #4740 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) created by chimerax-bug-report@…
[…]
10:26 AM Ticket #4735 (Asymmetric ribbon @CA hide/show behavior) closed by Tom Goddard
not a bug: The show and hide commands are not asymmetric. When a cartoon (ie …
10:21 AM Ticket #4739 (Saving session replaces existing commands) created by Tristan Croll
[…]
8:37 AM Ticket #4737 (Crash initially showing Rapid Access) closed by pett
duplicate
8:36 AM Ticket #4736 (Crash dropping window) closed by pett
limitation: Hi Arad, Thanks for reporting this problem. This is a problem with …
6:13 AM Ticket #4738 (OpenMMException: /usr/local/cuda/bin/nvcc: not found) created by aishen@…
[…]

Jun 6, 2021:

8:09 AM Ticket #4737 (Crash initially showing Rapid Access) created by chimerax-bug-report@…
[…]

Jun 5, 2021:

6:07 PM Ticket #4736 (Crash dropping window) created by mogha019@…
[…]
10:45 AM Ticket #4735 (Asymmetric ribbon @CA hide/show behavior) created by bssfh@…
[…]

Jun 4, 2021:

11:43 PM Ticket #4729 (Control enable/disable of toolbar buttons) closed by Greg Couch
fixed: Done. It will be in the next daily build. For convenience, I added: …
6:28 PM Ticket #4733 (Checksums wrong on download page for Redhat 8 RPM) closed by Greg Couch
fixed: The fix will appear tomorrow on the web page. The correct values are: …
6:19 PM Ticket #4734 (Make database fetch names case insensitive) created by Tom Goddard
Command "open HIV-1_0.1.6 from cellpack" says "No such database …
4:35 PM Ticket #4730 (Unknown crash) closed by pett
can't reproduce
11:58 AM Ticket #4727 (Crash initially showing Rapid Access) closed by Tom Goddard
duplicate: Crash showing rapid access at startup. I put a possible fix for this …
11:35 AM Ticket #4733 (Checksums wrong on download page for Redhat 8 RPM) created by ben@…
Begin forwarded message: From: Ben Webb Subject: Re: [chimerax-users] …
11:02 AM Ticket #4732 (Problem restoring session: Unable to restore "SchemesManager" object) created by rgrosely@…
[…]
10:43 AM Ticket #4731 ("devel install" requires version number bump) created by Tristan Croll
[…]
10:36 AM Ticket #4730 (Unknown crash) created by chimerax-bug-report@…
[…]
10:30 AM Ticket #4729 (Control enable/disable of toolbar buttons) created by Tristan Croll
[…]
8:01 AM Ticket #4728 (AddH: 'Structure' object has no attribute 'num_coord_sets') created by aishen@…
[…]
5:52 AM Ticket #4597 (Crash adding second residue inside a break) closed by Tristan Croll
fixed: Oh wait - my bad. I was running from the saved test session (which of …
4:11 AM Ticket #4727 (Crash initially showing Rapid Access) created by chimerax-bug-report@…
[…]

Jun 3, 2021:

11:53 PM Training edited by Tom Goddard
(diff)
11:49 PM Training edited by Tom Goddard
(diff)
11:41 PM Training edited by Tom Goddard
(diff)
11:31 PM Training edited by Tom Goddard
(diff)
11:30 PM Training edited by Tom Goddard
(diff)
11:29 PM Training edited by Tom Goddard
(diff)
11:18 PM Training created by Tom Goddard
11:04 PM WikiStart edited by Tom Goddard
(diff)
6:14 PM 2021-6-3 edited by Tom Goddard
(diff)
6:12 PM 2021-6-3 edited by Tom Goddard
(diff)
2:12 PM NTTData edited by pett
(diff)
2:11 PM NTTData edited by pett
(diff)
1:58 PM NTTData edited by Scooter Morris
(diff)
12:09 PM Ticket #4726 (Crash initially showing Rapid Access) created by cmajumdar@…
[…]
11:09 AM 2021-6-3 created by Tom Goddard
10:04 AM Ticket #4722 (Session reset: StructureGraphicsChangeManager removing models that ...) closed by Tom Goddard
can't reproduce: I could add code that ignores the inconsistent graphics updater state …
8:59 AM Ticket #4725 (Sample bundle needs updating) created by Tristan Croll
[…]
8:41 AM Ticket #4724 (GaudiViewX not compatible with latest ChimeraX) closed by pett
nonchimerax: Hi Ana, GaudiViewX is not compatible with the latest versions of …
6:21 AM Ticket #4724 (GaudiViewX not compatible with latest ChimeraX) created by ana.dolinar@…
[…]
3:24 AM Ticket #4723 (Dead links in "toolshed list") created by Tristan Croll
[…]
12:23 AM Ticket #4709 (can't install chimerax) closed by Greg Couch
fixed: Okay, I think I understand what's going on now. Both rstudio and …

Jun 2, 2021:

10:05 PM Ticket #4722 (Session reset: StructureGraphicsChangeManager removing models that ...) created by chimerax-bug-report@…
[…]
5:15 PM Ticket #4717 (Graphics crash, macOS 10.14.6, Geforce GT 750M) closed by Tom Goddard
nonchimerax: ChimeraX crashed in the Mac graphics driver. Apple's graphics drivers …
2:20 PM Ticket #4713 (Crash opening IHM model) closed by pett
fixed: The PDB reader now checks for an error occurring during PyFile_GetLine …
1:22 PM Ticket #4719 (crash in ring_aromatic) closed by pett
duplicate
12:23 PM Ticket #4721 (tilted slab: 'numpy.ndarray' object is not callable) created by chimerax-bug-report@…
[…]
12:10 PM Ticket #4720 (Graphics crash, macOS 11.3.1, Radeon Pro 555X) created by chimerax-bug-report@…
[…]
11:42 AM Ticket #4719 (crash in ring_aromatic) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #4718 (Crash opening PDB-Dev model 65) closed by Tom Goddard
duplicate
11:00 AM Ticket #4716 (Crash opening PDB-Dev model 65) closed by Tom Goddard
duplicate
10:44 AM Ticket #4718 (Crash opening PDB-Dev model 65) created by goddard@…
[…]
10:12 AM Ticket #4717 (Graphics crash, macOS 10.14.6, Geforce GT 750M) created by apadavannil@…
[…]
9:47 AM Ticket #4716 (Crash opening PDB-Dev model 65) created by goddard@…
[…]
9:31 AM Ticket #4715 (Color drag/drop crash on Big Sur) closed by Tom Goddard
nonchimerax: I tried dragging colors in the macOS color chooser in ChimeraX 1.2.5, …
9:11 AM Ticket #4714 (Crash while sleeping and also using ISOLDE) closed by Tom Goddard
can't reproduce: This crash was when Qt was redrawing the user interface. Also ISOLDE …
8:30 AM Ticket #4712 (Crash in QtWebEngineCore) closed by pett
can't reproduce
6:31 AM Ticket #4715 (Color drag/drop crash on Big Sur) created by guillechuma24@…
[…]
5:29 AM Ticket #4714 (Crash while sleeping and also using ISOLDE) created by bullitt@…
[…]
2:11 AM Ticket #4713 (Crash opening IHM model) created by andrea.graziadei@…
[…]

Jun 1, 2021:

3:44 PM Ticket #4712 (Crash in QtWebEngineCore) created by chimerax-bug-report@…
[…]
10:12 AM Ticket #4707 (Trashed C++ stack and no Python stack) closed by Tom Goddard
duplicate: Duplicate of #4705. Crash in VizCompositorThread.
10:09 AM Ticket #4705 (Crash in draw_background (trashed C++ stack)) closed by Tom Goddard
nonchimerax: Thread 9 crashed, VizCompositorThread. Probably graphics driver …
10:06 AM Ticket #4704 (Graphics crash, maOS 10.14.1, Intel Iris Plus 655, report 2) closed by Tom Goddard
nonchimerax: Mac graphics driver crashed. Unfortunately Apple's OpenGL graphics …
10:01 AM Ticket #4701 (Graphics crash, macOS 11.2.2, Geforce GT 750M, report 2) closed by Tom Goddard
nonchimerax: Mac graphics driver crashed. Unfortunately Apple's OpenGL graphics …
9:38 AM Ticket #4711 (Allow saving default volume display settings) created by olibclarke@…
Begin forwarded message: From: Oliver Clarke Subject: …
9:37 AM Ticket #4710 (Problem contacting Toolshed) closed by pett
fixed: Hi Saw, There was a problem with our web site which now has been …
9:29 AM Ticket #4708 (Crash showing Rapid access at startup) closed by pett
duplicate: Perhaps fixed by recent change?
6:06 AM Ticket #4710 (Problem contacting Toolshed) created by saw.simeon@…
[…]

May 31, 2021:

9:03 PM Ticket #4709 (can't install chimerax) created by francisco.murphy@…
[…]
1:35 PM Ticket #4708 (Crash showing Rapid access at startup) created by chimerax-bug-report@…
[…]
8:58 AM Ticket #4707 (Trashed C++ stack and no Python stack) created by chimerax-bug-report@…
[…]

May 30, 2021:

8:20 PM Ticket #4706 (Peptide flip: Simulation must be running!) created by jporta@…
[…]
12:41 PM Ticket #4705 (Crash in draw_background (trashed C++ stack)) created by chimerax-bug-report@…
[…]
12:39 PM Ticket #4704 (Graphics crash, maOS 10.14.1, Intel Iris Plus 655, report 2) created by kpwulab@…
[…]
7:31 AM Ticket #4703 (KeyboardInterrupt) created by zhaozhennan15@…
[…]

May 29, 2021:

8:36 PM Ticket #4702 (OpenMMException: Error compiling kernel: Compile Server Error) created by fasseli.coulibaly@…
[…]
12:35 AM Ticket #4701 (Graphics crash, macOS 11.2.2, Geforce GT 750M, report 2) created by luo92@…
[…]

May 28, 2021:

8:40 PM Ticket #4693 (sqlite module broken) closed by Greg Couch
fixed: Added sqlite3 library and headers to all Linux singularity containers. …
7:34 PM Ticket #4700 (Crash in QtWebEngineCore) created by 1195947331@…
[…]
5:38 PM Ticket #4699 ('SaveModelOptionWidget' object has no attribute '_name') closed by pett
duplicate: Hi Abhilash, Thanks for reporting this problem. It has been fixed in …
5:29 PM Ticket #4696 (Cannot create sideview OpenGL context) closed by Tom Goddard
fixed: Fixed. When ChimeraX starts requesting stereo OpenGL and the driver …
5:22 PM Ticket #4699 ('SaveModelOptionWidget' object has no attribute '_name') created by apadavannil@…
[…]
5:08 PM Ticket #4698 (Crash showing Rapid access at startup) closed by Tom Goddard
fixed: Added possible fix in daily build. This startup crash seems to be Qt …
4:51 PM Dev2021-6-10 created by Tom Goddard
4:49 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:48 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:59 PM Ticket #4698 (Crash showing Rapid access at startup) created by d301108007@…
[…]
10:15 AM Ticket #4697 (Open dialog vs. required args) created by Tristan Croll
[…]
7:55 AM Ticket #4696 (Cannot create sideview OpenGL context) created by chimerax-bug-report@…
[…]

May 27, 2021:

7:43 PM Ticket #4695 (Crash on exit) closed by Tom Goddard
nonchimerax: Seems Qt is exiting and the PyQt wrapper code (made by sip) is doing …
7:05 PM Ticket #4691 (Graphics crash, macOS 10.14.1, Intel Iris Plus 655) closed by Tom Goddard
nonchimerax: Typical Apple Intel graphics driver crash, large amount of data open …
6:13 PM ChangeLog edited by Greg Couch
(diff)
2:57 PM Ticket #4694 (AddH crash) closed by pett
duplicate: Hi Alexis, Thanks for reporting this problem. It is fixed in the …
2:57 PM 2021-5-27 edited by Tom Goddard
(diff)
2:47 PM Dev2021-5-27 edited by Tom Goddard
(diff)
2:04 PM ChangeLog edited by pett
(diff)
1:42 PM Ticket #4695 (Crash on exit) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #4694 (AddH crash) created by rohou.alexis@…
[…]
12:20 PM Ticket #4693 (sqlite module broken) created by johannes.elferich@…
[…]
8:30 AM Ticket #4689 (unable to register copy) closed by pett
fixed: Hi Isabelle, Our servers were down for about 24 hours for scheduled …
6:30 AM Ticket #4692 (Loading coordsets does not bring up slider + related problems) created by Tristan Croll
[…]
4:17 AM Ticket #4691 (Graphics crash, macOS 10.14.1, Intel Iris Plus 655) created by kpwulab@…
[…]

May 26, 2021:

9:23 PM Dev2021-5-27 edited by Tom Goddard
(diff)
9:23 PM 2021-5-27 edited by Tom Goddard
(diff)
7:02 PM Dev2021-5-27 created by Tom Goddard
6:59 PM 2021-5-27 created by Tom Goddard
6:58 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:33 PM Ticket #4690 (Simplify computing CA RMSD of an ensemble of structures.) created by Tom Goddard
Current steps for computing the CA RMSD of a set of structures are …
5:54 PM Ticket #4689 (unable to register copy) created by Isabelle.Phan@…
[…]

May 25, 2021:

12:03 PM Ticket #4688 (Unknown crash) created by whbgreer@…
[…]
11:12 AM Ticket #4687 (Graphics crash, macOS 11.2.2, Geforce GT 750M, report 1) closed by Tom Goddard
nonchimerax: This ChimeraX crash was in the Mac Nvidia(!) graphics driver. …
12:11 AM ChangeLog edited by Greg Couch
(diff)
12:10 AM Ticket #4687 (Graphics crash, macOS 11.2.2, Geforce GT 750M, report 1) created by luo92@…
[…]

May 24, 2021:

5:18 PM Ticket #4686 (Include logged commands in crash reports) created by Tom Goddard
I would be useful for crash bug reports to have the commands the user …
5:14 PM Ticket #4681 (Crash in Collection.__iter__) closed by Tom Goddard
can't reproduce: It makes sense that garbage collection will often be triggered by …
12:38 PM Ticket #4685 (Wireframe option) created by silva228@…
[…]
11:05 AM Ticket #4571 (GUI 'cd') closed by pett
fixed: Put a "Set Working Folder" entry in the File menu which simply issues …
9:15 AM Ticket #4684 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
duplicate: Hi Miao, Thanks for reporting this problem. This bug was fixed about …
9:11 AM Ticket #4683 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
duplicate

May 23, 2021:

6:48 PM Milestone 1.2 completed
Completed New Features (see change log for more …

May 22, 2021:

7:49 PM Ticket #4684 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by mm2303@…
[…]
3:12 PM Ticket #4683 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
1:19 AM Ticket #4682 (Bug writing mmCIF for glycosylated protein) created by Tristan Croll
[…] cif_bug.cxs

May 21, 2021:

11:58 AM ChangeLog edited by pett
(diff)
11:57 AM ChangeLog edited by pett
(diff)
11:24 AM ChangeLog edited by pett
(diff)
10:43 AM Ticket #4681 (Crash in Collection.__iter__) created by chimerax-bug-report@…
[…]
10:32 AM Ticket #4680 (Unknown crash) closed by pett
can't reproduce
9:15 AM Ticket #4677 (Unknown crash) closed by pett
can't reproduce
6:27 AM Ticket #4680 (Unknown crash) created by chimerax-bug-report@…
[…]

May 20, 2021:

11:55 PM Ticket #4664 (Please change the CentOS rpm so that it installs in other locations easily) reopened by Greg Couch
ISOLDE needs a production release, not a daily release. I will …
8:31 PM Ticket #4679 (Crash initially showing Rapid Access) created by chimerax-bug-report@…
[…]
7:54 PM Ticket #4678 (Large alignment performance) created by goddard@…
[…]
7:38 PM Ticket #4677 (Unknown crash) created by chimerax-bug-report@…
[…]
7:13 PM ChangeLog edited by pett
(diff)
7:08 PM Ticket #4505 (Read PSF+DCD combo directly) closed by pett
fixed: Tomorrow's daily build will support the command "open <PSF file> …
5:22 PM Ticket #4671 (Black screen) closed by Tom Goddard
can't reproduce: I tested on an iMac18.3 removing ~/Library/Application
4:54 PM NTTData edited by Tom Goddard
(diff)
4:52 PM NTTData edited by Tom Goddard
(diff)
4:35 PM Ticket #4676 (color byattribute colors residues even if no residue atom has an ...) created by goddard@…
[…]
4:24 PM 2021-5-20 edited by Tom Goddard
(diff)
4:05 PM Ticket #4675 (tape measure using closed model) closed by Tom Goddard
duplicate: Duplicate of #3457
2:39 PM ChangeLog edited by Elaine Meng
(diff)
2:00 PM NTTData edited by Elaine Meng
(diff)
1:48 PM NTTData edited by Elaine Meng
(diff)
1:36 PM NTTData edited by Elaine Meng
(diff)
1:21 PM NTTData edited by Elaine Meng
(diff)
1:12 PM NTTData edited by Elaine Meng
(diff)
12:04 PM 2021-5-20 edited by Tom Ferrin
(diff)
11:42 AM Ticket #4675 (tape measure using closed model) created by chimerax-bug-report@…
[…]
11:39 AM 2021-5-20 edited by Tom Ferrin
(diff)
11:06 AM 2021-5-20 edited by Tom Ferrin
(diff)
11:02 AM 2021-5-20 edited by Tom Ferrin
(diff)
10:57 AM Ticket #4667 (Crash during garbage collection) closed by pett
can't reproduce: Yep, tried various monkeyshines with iterators and bupkis.
10:44 AM Ticket #4668 (Color by attribute traceback for unknown attribute) closed by pett
fixed: The Structure class wasn't registering its builtin attributes …
10:02 AM 2021-5-20 edited by Tom Goddard
(diff)
9:13 AM Ticket #4673 (Error in toolshed error message) closed by pett
duplicate
9:11 AM Ticket #4672 (Reload files) closed by pett
fixed: Good idea -- but we thought of it first! :-) --Eric
6:23 AM Ticket #4674 (Error in session restore: unhashable type: 'dict') created by peter@…
[…] masterfileChimeraX.cxs
6:04 AM Ticket #4673 (Error in toolshed error message) created by chimerax-bug-report@…
[…]
2:03 AM Ticket #4672 (Reload files) created by rob@…
[…]
2:01 AM Ticket #4671 (Black screen) created by rob@…
[…]

May 19, 2021:

8:44 PM Ticket #4670 (Replace OpenGL rendering with Vulkan or other modern 3D graphics library) created by Tom Goddard
Might consider switching from OpenGL to Vulkan graphics. On macOS we …
8:26 PM Ticket #4669 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 20, small map) closed by Tom Goddard
can't reproduce: It looks like the only new observation I get from this crash is that …
6:48 PM Ticket #4669 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 20, small map) created by goddard@…
[…] Screen Shot 2021-05-19 at 6.44.23 PM.png
6:16 PM Ticket #4668 (Color by attribute traceback for unknown attribute) created by goddard@…
[…]
12:28 PM Ticket #4667 (Crash during garbage collection) created by chimerax-bug-report@…
[…]
10:30 AM Ticket #4666 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 2) closed by Tom Goddard
can't reproduce: Apple graphics driver crash. I suspect volume contour level was being …
9:11 AM Ticket #4666 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 2) created by chimerax-bug-report@…
[…]

May 18, 2021:

11:15 PM ChangeLog edited by Greg Couch
(diff)
11:08 PM Ticket #3237 (nucleotides disconnected) closed by Greg Couch
fixed: This is finally fixed in the daily build. And will be in the next 1.2 …
11:05 PM Ticket #4664 (Please change the CentOS rpm so that it installs in other locations easily) closed by Greg Couch
fixed: Okay, the next ChimeraX daily build's rpm will be relocatable. You …
6:11 PM Ticket #4665 (RFE: matchmaker "reportMatrix" option) created by Elaine Meng
It would be very useful for people comparing domain rotations and such …
5:30 PM Ticket #4664 (Please change the CentOS rpm so that it installs in other locations easily) created by fukamitka@…
By the way, can you provide an install package for RH7/8 which can be …
10:10 AM Ticket #4663 (Make native Apple M1 CPU distribution) created by Tom Goddard
Apple is replacing Intel CPUs in all machines with ARM cpus. Already …
10:00 AM 2021-5-20 edited by Tom Goddard
(diff)
9:59 AM 2021-5-20 created by Tom Goddard
9:57 AM DeveloperMeetings edited by Tom Goddard
(diff)
8:31 AM Ticket #4662 (Coulombic failure due to unexpected hydrogen name) closed by pett
duplicate
3:01 AM Ticket #4662 (Coulombic failure due to unexpected hydrogen name) created by chimerax-bug-report@…
[…]

May 17, 2021:

6:33 PM Ticket #4661 (Update to Python 3.9) created by Tom Goddard
For the ChimeraX 1.3 release we probably should update from Python 3.8 …
5:36 PM Ticket #4644 (AddCharge: Ng+ charges) closed by pett
fixed: Changed and simplified the charge estimation code for guanidinium groups.
3:44 PM Ticket #4587 (Python shell: ERROR:tornado.general:Uncaught exception in zmqstream ...) closed by pett
fixed: The updated versions seem functional under extremely limited testing. …
1:03 PM Ticket #4657 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 7, ...) closed by Tom Goddard
can't reproduce: Crash in opencl likely being used by openmm / isolde. Crash is in …
12:04 PM Ticket #4660 (Crash during dynamic linking under Rosetta emulation) closed by pett
can't reproduce
12:02 PM Ticket #4659 (Setting file in use by another process) closed by pett
duplicate: Hopefully fixed by embedding process IDs into the temp file names.
11:48 AM Ticket #4660 (Crash during dynamic linking under Rosetta emulation) created by chimerax-bug-report@…
[…]
11:00 AM Ticket #4656 (Graphics crash, macOS 11.3.1, Radeon Pro 580X) closed by Tom Goddard
nonchimerax: ChimeraX crashed in the Mac graphics driver. Unfortunately Apple's …
10:58 AM Ticket #4659 (Setting file in use by another process) created by chimerax-bug-report@…
[…]
10:54 AM Ticket #4655 (Graphics crash, macOS 11.3.1, Radeon Pro 580) closed by Tom Goddard
can't reproduce: Mac graphics driver crash when repainting a Qt widget 18 QtWidgets
10:46 AM Ticket #4651 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 6) closed by Tom Goddard
can't reproduce: Crash in Mac graphics driver in QWidgetRepaintManager::flush(QWidget*, …
10:41 AM Ticket #4647 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 5, ...) closed by Tom Goddard
can't reproduce: Mac graphics driver crash in OpenMM, in thread 35. 27 …
10:38 AM Ticket #4646 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 4) closed by Tom Goddard
nonchimerax: Crashed in Mac graphics driver, repainting Qt widget, ~1 Gbyte of data …
10:25 AM Ticket #1938 (nucleotides tube selection not usable by commands) closed by Greg Couch
fixed: Went with the whole ribose. The difference is that with the whole …
10:24 AM Ticket #4649 (ISOLDE: 'PositionRestraintMgr' object has no attribute '_c_pointer') closed by Tristan Croll
duplicate: User closed the model with a simulation running. I *will* eventually …
9:42 AM Ticket #4658 (OpenMMException: Error compiling kernel: Compile Server Error) created by t.sharp@…
[…]
9:33 AM Ticket #4653 (Toolshed error in "already installed" error message) closed by pett
duplicate
9:31 AM Ticket #4652 (KeyError in map menu) closed by pett
duplicate: Hi Zoe, I'm fairly certain that this is fixed in the latest release …
9:26 AM Ticket #4650 (Toolshed error in "already installed" error message) closed by pett
duplicate: Hi Jason, First off: what Tristan said. This error was trying to …
9:21 AM Ticket #4648 (Error in toolshed error message) closed by pett
duplicate
9:16 AM Ticket #4645 (MD Viewer: could not broadcast input array from shape) closed by pett
can't reproduce: Don't know what input file the user was using.
9:06 AM Ticket #4657 (Graphics crash, macOS 11.3, Radeon Pro 580 external gpu, report 7, ...) created by chimerax-bug-report@…
[…]
8:27 AM Ticket #4656 (Graphics crash, macOS 11.3.1, Radeon Pro 580X) created by caillancm@…
[…]
7:16 AM Ticket #4655 (Graphics crash, macOS 11.3.1, Radeon Pro 580) created by eortlun@…
[…]

May 16, 2021:

5:43 AM Ticket #4654 (ISOLDE: volumecommand.volume being passed session of None) created by chimerax-bug-report@…
[…]
5:43 AM Ticket #4653 (Toolshed error in "already installed" error message) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.