![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#4707 closed defect (duplicate)
Trashed C++ stack and no Python stack
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [2701]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [2701]
User ID: 501
Date/Time: 2021-05-30 14:39:28.791 -0500
OS Version: macOS 11.4 (20F71)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: 80B969AB-0897-2AD8-F135-95682B8A1944
Sleep/Wake UUID: D5863FC7-9079-4538-ADC2-6CBB20053917
Time Awake Since Boot: 2200 seconds
Time Since Wake: 150 seconds
System Integrity Protection: enabled
Crashed Thread: 9 VizCompositorThread
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000011a540492
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [2701]
VM Regions Near 0x11a540492:
mapped file 1178fb000-117a1e000 [ 1164K] r--/rwx SM=COW Object_id=8df876cf
--> mapped file 117a1e000-11f70d000 [124.9M] r-x/rwx SM=COW Object_id=8c22d6cf
mapped file 11f70d000-11fc46000 [ 5348K] rw-/rwx SM=COW Object_id=8d55a2cf
Thread 0:: CrBrowserMain
0 ??? 0x00007fff2033104e 0 + 140733733605454
1 ??? 0x000000010a8323a3 0 + 4471333795
2 ??? 0x000000010a8324f7 0 + 4471334135
3 ??? 0x000000010a8327e3 0 + 4471334883
4 ??? 0x000000010a8936b8 0 + 4471731896
5 ??? 0x00007fff203a8d7d 0 + 140733734096253
6 ChimeraX 000000000000000000 0 + 0
7 ??? 0x000000010a70ea85 0 + 4470139525
8 ??? 0x000000010a710c52 0 + 4470148178
9 ??? 0x000000010a710e8c 0 + 4470148748
10 ??? 0x000000011142fbb4 0 + 4584569780
11 ??? 0x000000010a70eef2 0 + 4470140658
12 ??? 0x000000010a764c19 0 + 4470492185
13 ??? 0x000000010a70ea85 0 + 4470139525
14 ??? 0x000000010a7dd665 0 + 4470986341
15 ??? 0x000000010a7da46e 0 + 4470973550
16 ??? 0x000000010a7de454 0 + 4470989908
17 ??? 0x000000010a70f56e 0 + 4470142318
18 ??? 0x000000010a7dd60c 0 + 4470986252
19 ??? 0x000000010a7da44a 0 + 4470973514
20 ??? 0x000000010a70f3d0 0 + 4470141904
21 ??? 0x000000010a7dd60c 0 + 4470986252
22 ??? 0x000000010a7da44a 0 + 4470973514
23 ??? 0x000000010a70f3d0 0 + 4470141904
24 ??? 0x000000010a7dd60c 0 + 4470986252
25 ??? 0x000000010a7da44a 0 + 4470973514
26 ??? 0x000000010a7de454 0 + 4470989908
27 ??? 0x000000010a70f56e 0 + 4470142318
28 ??? 0x000000010a7dd60c 0 + 4470986252
29 ??? 0x000000010a7da44a 0 + 4470973514
30 ??? 0x000000010a70f3d0 0 + 4470141904
31 ??? 0x000000010a711a9a 0 + 4470151834
32 ??? 0x000000010a7dd60c 0 + 4470986252
33 ??? 0x000000010a7da46e 0 + 4470973550
34 ??? 0x000000010a7de454 0 + 4470989908
35 ??? 0x000000010a70f56e 0 + 4470142318
36 ??? 0x000000010a711a9a 0 + 4470151834
37 ??? 0x000000010a7dd60c 0 + 4470986252
38 ??? 0x000000010a7da46e 0 + 4470973550
39 ??? 0x000000010a70f3d0 0 + 4470141904
40 ??? 0x000000010a7dd60c 0 + 4470986252
41 ??? 0x000000010a7da44a 0 + 4470973514
42 ??? 0x000000010a70f3d0 0 + 4470141904
43 ??? 0x000000010a7dd60c 0 + 4470986252
44 ??? 0x000000010a7da44a 0 + 4470973514
45 ??? 0x000000010a70f3d0 0 + 4470141904
46 ??? 0x000000010a7dd60c 0 + 4470986252
47 ??? 0x000000010a7da44a 0 + 4470973514
48 ??? 0x000000010a7de454 0 + 4470989908
49 ??? 0x000000010a70f56e 0 + 4470142318
50 ??? 0x000000010a7dd60c 0 + 4470986252
51 ??? 0x000000010a7da44a 0 + 4470973514
52 ??? 0x000000010a70f3d0 0 + 4470141904
53 ??? 0x000000010a7dd60c 0 + 4470986252
54 ??? 0x000000010a7da44a 0 + 4470973514
55 ??? 0x000000010a70f3d0 0 + 4470141904
56 ??? 0x000000010a711adb 0 + 4470151899
57 ??? 0x000000010a70edad 0 + 4470140333
58 ??? 0x00000001139f3957 0 + 4624169303
59 ??? 0x00000001139f3866 0 + 4624169062
60 ??? 0x00000001139f4455 0 + 4624172117
61 ??? 0x00000001139f43ca 0 + 4624171978
62 ??? 0x0000000113dd7f6e 0 + 4628250478
63 ??? 0x0000000113de14c2 0 + 4628288706
64 ??? 0x00000001138dcbf9 0 + 4623027193
65 ??? 0x0000000113dcf85f 0 + 4628215903
66 ??? 0x00000001138dca7a 0 + 4623026810
67 ??? 0x00000001166d49ea 0 + 4671228394
68 ??? 0x00000001166d5e11 0 + 4671233553
69 ??? 0x0000000116287db9 0 + 4666719673
70 ??? 0x0000000113da4a34 0 + 4628040244
71 ??? 0x0000000113e0a35f 0 + 4628456287
72 ??? 0x0000000124bd38f2 0 + 4911347954
73 ??? 0x00007fff2045c97c 0 + 140733734832508
74 ??? 0x00007fff2045c8e4 0 + 140733734832356
75 ??? 0x00007fff2045c664 0 + 140733734831716
76 ??? 0x00007fff2045b08c 0 + 140733734826124
77 ??? 0x00007fff2045a64c 0 + 140733734823500
78 ??? 0x00007fff28698ab3 0 + 140733871393459
79 ??? 0x00007fff28698815 0 + 140733871392789
80 ??? 0x00007fff286985b3 0 + 140733871392179
81 ??? 0x00007fff22c5b6f2 0 + 140733776770802
82 ??? 0x00007fff22c59ec5 0 + 140733776764613
83 ??? 0x00007fff22c4c239 0 + 140733776708153
84 ??? 0x0000000124bd462f 0 + 4911351343
85 ??? 0x0000000113da0acf 0 + 4628024015
86 ??? 0x0000000113da5042 0 + 4628041794
87 ??? 0x0000000116379702 0 + 4667709186
88 ??? 0x000000010a70f0c2 0 + 4470141122
89 ??? 0x000000010a70ea85 0 + 4470139525
90 ??? 0x000000010a7dd665 0 + 4470986341
91 ??? 0x000000010a7da46e 0 + 4470973550
92 ??? 0x000000010a70f3d0 0 + 4470141904
93 ??? 0x000000010a711a9a 0 + 4470151834
94 ??? 0x000000010a7dd60c 0 + 4470986252
95 ??? 0x000000010a7da46e 0 + 4470973550
96 ??? 0x000000010a7de454 0 + 4470989908
97 ??? 0x000000010a70f56e 0 + 4470142318
98 ??? 0x000000010a7dd60c 0 + 4470986252
99 ??? 0x000000010a7da505 0 + 4470973701
100 ??? 0x000000010a7de454 0 + 4470989908
101 ??? 0x000000010a7d3f44 0 + 4470947652
102 ??? 0x000000010a7d1332 0 + 4470936370
103 ??? 0x000000010a74b5ff 0 + 4470388223
104 ??? 0x000000010a7dd60c 0 + 4470986252
105 ??? 0x000000010a7da505 0 + 4470973701
106 ??? 0x000000010a7de454 0 + 4470989908
107 ??? 0x000000010a70f56e 0 + 4470142318
108 ??? 0x000000010a7dd60c 0 + 4470986252
109 ??? 0x000000010a7da505 0 + 4470973701
110 ??? 0x000000010a7de454 0 + 4470989908
111 ??? 0x000000010a70f56e 0 + 4470142318
112 ??? 0x000000010a70edad 0 + 4470140333
113 ??? 0x000000010a840eb3 0 + 4471393971
114 ??? 0x000000010a840585 0 + 4471391621
115 ??? 0x000000010a840bdf 0 + 4471393247
116 ??? 0x000000010a840aeb 0 + 4471393003
117 ??? 0x000000010a6e1dc8 0 + 4469956040
118 ??? 0x00007fff2037ef5d 0 + 140733733924701
Thread 1:: ThreadPoolServiceThread
0 ??? 0x00007fff203371d2 0 + 140733733630418
1 ??? 0x000000011a54acc7 0 + 4736724167
2 ??? 0x000000011a4d362b 0 + 4736235051
3 ??? 0x000000011a4977cb 0 + 4735989707
4 ??? 0x000000011a4dea94 0 + 4736281236
5 ??? 0x000000011a4f2a7d 0 + 4736363133
6 ??? 0x000000011a53be07 0 + 4736663047
7 ??? 0x00007fff203638fc 0 + 140733733812476
8 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 2:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a4e8778 0 + 4736321400
4 ??? 0x000000011a4e9150 0 + 4736323920
5 ??? 0x000000011a4e8c44 0 + 4736322628
6 ??? 0x000000011a53be07 0 + 4736663047
7 ??? 0x00007fff203638fc 0 + 140733733812476
8 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 3:: Chrome_IOThread
0 ??? 0x00007fff203371d2 0 + 140733733630418
1 ??? 0x000000011a54acc7 0 + 4736724167
2 ??? 0x000000011a4d362b 0 + 4736235051
3 ??? 0x000000011a4977cb 0 + 4735989707
4 ??? 0x000000011e417f06 0 + 4802576134
5 ??? 0x000000011a4f2a7d 0 + 4736363133
6 ??? 0x000000011a53be07 0 + 4736663047
7 ??? 0x00007fff203638fc 0 + 140733733812476
8 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 4:: NetworkConfigWatcher
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4681db 0 + 4735795675
5 ??? 0x000000011a4d362b 0 + 4736235051
6 ??? 0x000000011a4977cb 0 + 4735989707
7 ??? 0x000000011a4f2a7d 0 + 4736363133
8 ??? 0x000000011a53be07 0 + 4736663047
9 ??? 0x00007fff203638fc 0 + 140733733812476
10 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 5:: CompositorTileWorker1
0 ??? 0x00007fff20330cde 0 + 140733733604574
1 ??? 0x000000011a537e18 0 + 4736646680
2 ??? 0x000000011b7ef5f8 0 + 4756272632
3 ??? 0x000000011a53be07 0 + 4736663047
4 ??? 0x00007fff203638fc 0 + 140733733812476
5 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 6:: Chrome_InProcGpuThread
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a46820f 0 + 4735795727
4 ??? 0x000000011a4d362b 0 + 4736235051
5 ??? 0x000000011a4977cb 0 + 4735989707
6 ??? 0x000000011a4f2a7d 0 + 4736363133
7 ??? 0x000000011a53be07 0 + 4736663047
8 ??? 0x00007fff203638fc 0 + 140733733812476
9 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 7:: Chrome_ChildIOThread
0 ??? 0x00007fff203371d2 0 + 140733733630418
1 ??? 0x000000011a54acc7 0 + 4736724167
2 ??? 0x000000011a4d362b 0 + 4736235051
3 ??? 0x000000011a4977cb 0 + 4735989707
4 ??? 0x000000011a4f2a7d 0 + 4736363133
5 ??? 0x000000011a53be07 0 + 4736663047
6 ??? 0x00007fff203638fc 0 + 140733733812476
7 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 8:: NetworkConfigWatcher
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4681db 0 + 4735795675
5 ??? 0x000000011a4d362b 0 + 4736235051
6 ??? 0x000000011a4977cb 0 + 4735989707
7 ??? 0x000000011a4f2a7d 0 + 4736363133
8 ??? 0x000000011a53be07 0 + 4736663047
9 ??? 0x00007fff203638fc 0 + 140733733812476
10 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 9 Crashed:: VizCompositorThread
0 ??? 0x000000011a540492 0 + 4736681106
1 ??? 0x000000011a46820f 0 + 4735795727
2 ??? 0x000000011a4d362b 0 + 4736235051
3 ??? 0x000000011a4977cb 0 + 4735989707
4 ??? 0x000000011a4f2a7d 0 + 4736363133
5 ??? 0x000000011a53be07 0 + 4736663047
6 ??? 0x00007fff203638fc 0 + 140733733812476
7 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4681db 0 + 4735795675
5 ??? 0x000000011a4d362b 0 + 4736235051
6 ??? 0x000000011a4977cb 0 + 4735989707
7 ??? 0x000000011a4f2a7d 0 + 4736363133
8 ??? 0x000000011a53be07 0 + 4736663047
9 ??? 0x00007fff203638fc 0 + 140733733812476
10 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4e876a 0 + 4736321386
5 ??? 0x000000011a4e9150 0 + 4736323920
6 ??? 0x000000011a4e8d34 0 + 4736322868
7 ??? 0x000000011a53be07 0 + 4736663047
8 ??? 0x00007fff203638fc 0 + 140733733812476
9 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 12:: MemoryInfra
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4681db 0 + 4735795675
5 ??? 0x000000011a4d362b 0 + 4736235051
6 ??? 0x000000011a4977cb 0 + 4735989707
7 ??? 0x000000011a4f2a7d 0 + 4736363133
8 ??? 0x000000011a53be07 0 + 4736663047
9 ??? 0x00007fff203638fc 0 + 140733733812476
10 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 13:: NetworkConfigWatcher
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4681db 0 + 4735795675
5 ??? 0x000000011a4d362b 0 + 4736235051
6 ??? 0x000000011a4977cb 0 + 4735989707
7 ??? 0x000000011a4f2a7d 0 + 4736363133
8 ??? 0x000000011a53be07 0 + 4736663047
9 ??? 0x00007fff203638fc 0 + 140733733812476
10 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 14:: com.apple.NSEventThread
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x00007fff2045cb5f 0 + 140733734832991
3 ??? 0x00007fff2045b23f 0 + 140733734826559
4 ??? 0x00007fff2045a64c 0 + 140733734823500
5 ??? 0x00007fff22de168a 0 + 140733778368138
6 ??? 0x00007fff203638fc 0 + 140733733812476
7 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 15:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4e876a 0 + 4736321386
5 ??? 0x000000011a4e8e3d 0 + 4736323133
6 ??? 0x000000011a4e8c74 0 + 4736322676
7 ??? 0x000000011a53be07 0 + 4736663047
8 ??? 0x00007fff203638fc 0 + 140733733812476
9 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 16:: ThreadPoolSingleThreadSharedForeground2
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a5402cf 0 + 4736680655
4 ??? 0x000000011a4e876a 0 + 4736321386
5 ??? 0x000000011a4e9150 0 + 4736323920
6 ??? 0x000000011a4e8d04 0 + 4736322820
7 ??? 0x000000011a53be07 0 + 4736663047
8 ??? 0x00007fff203638fc 0 + 140733733812476
9 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 17:: ThreadPoolForegroundWorker
0 ??? 0x00007fff2032e2ba 0 + 140733733593786
1 ??? 0x00007fff2032e62c 0 + 140733733594668
2 ??? 0x000000011a540492 0 + 4736681106
3 ??? 0x000000011a4e8778 0 + 4736321400
4 ??? 0x000000011a4e9150 0 + 4736323920
5 ??? 0x000000011a4e8cd4 0 + 4736322772
6 ??? 0x000000011a53be07 0 + 4736663047
7 ??? 0x00007fff203638fc 0 + 140733733812476
8 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 18:
0 ??? 0x00007fff20330cde 0 + 140733733604574
1 ??? 0x00000001565852eb 0 + 5743596267
2 ??? 0x00007fff203638fc 0 + 140733733812476
3 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 19:
0 ??? 0x00007fff20330cde 0 + 140733733604574
1 ??? 0x000000010b80327b 0 + 4487918203
2 ??? 0x00007fff203638fc 0 + 140733733812476
3 ??? 0x00007fff2035f443 0 + 140733733794883
Thread 20:
0 ??? 0x00007fff2035f420 0 + 140733733794848
Thread 9 crashed with X86 Thread State (64-bit):
rax: 0x0000000010004003 rbx: 0x000000000000000d rcx: 0x00007fff2032e2ba rdx: 0x0000000000000000
rdi: 0x000070000e9c2d70 rsi: 0x0000000000000102 rbp: 0x000070000e9c2df0 rsp: 0x000070000e9c2bf0
r8: 0x000000000000c103 r9: 0x000000000000000d r10: 0x0000000000000020 r11: 0x0000000000000202
r12: 0x0000000010004005 r13: 0x0000000000000020 r14: 0x0000000087b2cddc r15: 0x7fffffffffffffff
rip: 0x000000011a540492 rfl: 0x0000000000010206 cr2: 0x000070000d3fd988
Logical CPU: 0
Error Code: 0x02000004
Trap Number: 133
Thread 9 instruction stream not available.
Thread 9 last branch register state not available.
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x1175f0000 - 0x11768bfff dyld (852) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=848K resident=0K(0%) swapped_out_or_unallocated=848K(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 272K 22
CoreAnimation 176K 22
CoreGraphics 12K 2
CoreUI image data 4412K 33
Foundation 16K 1
Kernel Alloc Once 1364K 4
MALLOC 531.9M 693
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 80K 20
Stack 138.2M 21
Stack Guard 56.0M 1
VM_ALLOCATE 97.5M 137
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 224K 2
__DATA_CONST 32K 1
__LINKEDIT 240K 2
__TEXT 624K 1
dylib 2400K 38
dylib (reserved) 80K 9 reserved VM address space (unallocated)
mapped file 856.9M 610
shared memory 5444K 42
=========== ======= =======
TOTAL 1.9G 1690
TOTAL, minus reserved VM space 1.7G 1690
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Model: MacBookPro14,2, BootROM 429.120.4.0.0, 2 processors, Dual-Core Intel Core i7, 3.5 GHz, 16 GB, SMC 2.44f6
Graphics: kHW_IntelIrisGraphics650Item, Intel Iris Plus Graphics 650, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x171), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1680.8)
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.4.5
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i7
Processor Speed: 3.5 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 429.120.4.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 22:32
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Trashed C++ stack and no Python stack |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Duplicate of #4705. Crash in VizCompositorThread.