Opened 4 years ago

Closed 3 years ago

#4740 closed defect (fixed)

ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted

Reported by: chimerax-bug-report@… Owned by: Tristan Croll
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.4 (2021-05-14 07:23:00 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.4 (2021-05-14)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

Downloading bundle ChimeraX_ISOLDE-1.2.2-cp38-cp38-win_amd64.whl  
Successfully installed ChimeraX-Clipper-0.16.0 ChimeraX-ISOLDE-1.2.2  
Installed ChimeraX-Clipper (0.16.0)  
Installed ChimeraX-ISOLDE (1.2.2)  

> ui tool show ISOLDE

> set selectionWidth 4

Cached rama8000-cispro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-transpro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-gly-sym data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rama8000-prepro-noGP data not found. Regenerating from text file. This
is normal if running ISOLDE for the first time  
Cached rama8000-ileval-nopreP data not found. Regenerating from text file.
This is normal if running ISOLDE for the first time  
Cached rama8000-general-noGPIVpreP data not found. Regenerating from text
file. This is normal if running ISOLDE for the first time  
Forcefield cache not found or out of date. Regenerating from ffXML files. This
is normal if running ISOLDE for the first time, or after upgrading OpenMM.  
Done loading forcefield  

> open "C:/Users/Nate Yoder/OneDrive - University of California, San
> Francisco/Documents/academic/ucsf/coordinates/rs_refine9_extend-
> coot-1-csparcP274J41-sharp.pdb"

Summary of feedback from opening C:/Users/Nate Yoder/OneDrive - University of
California, San
Francisco/Documents/academic/ucsf/coordinates/rs_refine9_extend-
coot-1-csparcP274J41-sharp.pdb  
---  
warning | Ignored bad PDB record found on line 21274  
END  
  
Chain information for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb #1  
---  
Chain | Description  
B C D E | No description available  
  
Chain information for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb  
---  
Chain | Description  
1.2/B 1.2/C 1.2/D 1.2/E | No description available  
  
Cached rota8000-val data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-leu data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-ile data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-pro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-phe data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-tyr data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-trp data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-ser data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-thr data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-cys data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-met data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-lys data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-his data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-arg data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-asp data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-asn data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-gln data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  
Cached rota8000-glu data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time  

> addh hbond true

Summary of feedback from adding hydrogens to rs_refine9_extend-
coot-1-csparcP274J41-sharp.pdb #1.2  
---  
warnings | Not adding hydrogens to /D ILE 117 CB because it is missing heavy-
atom bond partners  
Not adding hydrogens to /D PHE 118 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D ASN 125 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D GLN 127 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D GLU 128 CB because it is missing heavy-atom bond
partners  
475 messages similar to the above omitted  
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: /B PRO 407 N; /D PRO 360 N; /C PRO 407 N; /C PRO 360 N; /D PRO
407 N; /E PRO 360 N; /B PRO 360 N; /E PRO 407 N  
notes | No usable SEQRES records for rs_refine9_extend-
coot-1-csparcP274J41-sharp.pdb (#1.2) chain B; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain C; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain D; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain E; guessing termini instead  
Chain-initial residues that are actual N termini: /B SER 116, /C SER 116, /D
SER 116, /E SER 116  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /B THR 751, /C THR 751, /D
THR 751, /E THR 751  
1627 hydrogen bonds  
/B THR 751 is not terminus, removing H atom from 'C'  
/C THR 751 is not terminus, removing H atom from 'C'  
/D THR 751 is not terminus, removing H atom from 'C'  
/E THR 751 is not terminus, removing H atom from 'C'  
17100 hydrogens added  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  

> addh hbond true metalDist 1.0

Summary of feedback from adding hydrogens to rs_refine9_extend-
coot-1-csparcP274J41-sharp.pdb #1.2  
---  
warnings | Not adding hydrogens to /D ILE 117 CB because it is missing heavy-
atom bond partners  
Not adding hydrogens to /D PHE 118 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D ASN 125 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D GLN 127 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /D GLU 128 CB because it is missing heavy-atom bond
partners  
475 messages similar to the above omitted  
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: /D PRO 360 N; /E PRO 360 N; /C PRO 360 N; /E PRO 407 N; /D PRO
407 N; /B PRO 360 N; /C PRO 407 N; /B PRO 407 N  
notes | No usable SEQRES records for rs_refine9_extend-
coot-1-csparcP274J41-sharp.pdb (#1.2) chain B; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain C; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain D; guessing termini instead  
No usable SEQRES records for rs_refine9_extend-coot-1-csparcP274J41-sharp.pdb
(#1.2) chain E; guessing termini instead  
Chain-initial residues that are actual N termini: /B SER 116, /C SER 116, /D
SER 116, /E SER 116  
Chain-initial residues that are not actual N termini:  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /B THR 751, /C THR 751, /D
THR 751, /E THR 751  
1557 hydrogen bonds  
/B THR 751 is not terminus, removing H atom from 'C'  
/C THR 751 is not terminus, removing H atom from 'C'  
/D THR 751 is not terminus, removing H atom from 'C'  
/E THR 751 is not terminus, removing H atom from 'C'  
0 hydrogens added  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 1162, in _changes_done_cb  
self._update_iffy_rota_list()  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
Error processing trigger "changes done":  
RuntimeError: wrapped C/C++ object of type QTableWidget has been deleted  
  
File "C:\Users\Nate Yoder\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\chimerax\isolde\isolde.py", line 2389, in _update_iffy_rota_list  
if not table.isVisible():  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 452.41
OpenGL renderer: Quadro M1200/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Precision 5520
OS: Microsoft Windows 10 Enterprise (Build 19042)
Memory: 25,614,442,496
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Xeon(R) CPU E3-1505M v6 @ 3.00GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.3
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-Clipper: 0.16.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.4
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.2.2
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.4
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.7
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.0
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 4 years ago

Component: Unassigned → Third Party
Owner: set to Tristan Croll
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted

comment:2 by Tristan Croll, 4 years ago

Huh. Thought I'd fixed that...

comment:3 by Tristan Croll, 3 years ago

Resolution: → fixed
Status: assigned → closed

Fixed by new GUI.

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