The following bug report has been submitted:
Platform: Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [65073]
Path: /Applications/Science/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [65073]
User ID: 501
Date/Time: 2021-05-31 03:34:05.881 +0800
OS Version: Mac OS X 10.14.1 (18B75)
Report Version: 12
Bridge OS Version: 5.2 (18P4347)
Anonymous UUID: 46243032-1D8F-9011-9F9C-AF784B976DB6
Sleep/Wake UUID: 8FADCFF4-0B9A-490D-964B-1FBE14AE8334
Time Awake Since Boot: 910000 seconds
Time Since Wake: 3700 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5ded2b86 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5df88c50 pthread_kill + 285
2 libsystem_c.dylib 0x00007fff5ddef096 raise + 26
3 libsystem_platform.dylib 0x00007fff5df7db3d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff5de3c1c9 abort + 127
6 libGPUSupportMercury.dylib 0x00007fff4c67f1c5 gpusGenerateCrashLog + 168
7 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff29f04d42 gpusKillClientExt + 9
8 libGPUSupportMercury.dylib 0x00007fff4c6806da gpusSubmitDataBuffers + 495
9 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff293750f4 IntelCommandBuffer::getNew(GLDContextRec*) + 48
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff29374f0a intelSubmitCommands + 171
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2937b91d glrWriteBufferData + 580
12 GLEngine 0x00007fff3ad2e2d5 glBufferSubData_Exec + 605
13 _ctypes.cpython-38-darwin.so 0x0000000115fd0f97 ffi_call_unix64 + 79
14 _ctypes.cpython-38-darwin.so 0x0000000115fd17f8 ffi_call + 872
15 _ctypes.cpython-38-darwin.so 0x0000000115fcbdf2 _ctypes_callproc + 962
16 _ctypes.cpython-38-darwin.so 0x0000000115fc5b90 PyCFuncPtr_call + 1152
17 org.python.python 0x000000010a609ef2 PyObject_Call + 162
18 org.python.python 0x000000010a65fc19 slot_tp_call + 201
19 wrapper.cpython-38-darwin.so 0x000000012cb63971 __Pyx_PyObject_Call + 97
20 wrapper.cpython-38-darwin.so 0x000000012cb707fd __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 765
21 latebind.cpython-38-darwin.so 0x000000012cbcc041 __Pyx_PyObject_Call + 97
22 latebind.cpython-38-darwin.so 0x000000012cbcb5ce __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 302
23 org.python.python 0x000000010a609a85 _PyObject_MakeTpCall + 373
24 org.python.python 0x000000010a6d8665 call_function + 533
25 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
26 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
27 org.python.python 0x000000010a60a319 _PyFunction_FastCallDict + 505
28 latebind.cpython-38-darwin.so 0x000000012cbcc041 __Pyx_PyObject_Call + 97
29 latebind.cpython-38-darwin.so 0x000000012cbcd421 __pyx_pw_17OpenGL_accelerate_8latebind_5Curry_3__call__ + 129
30 org.python.python 0x000000010a609a85 _PyObject_MakeTpCall + 373
31 org.python.python 0x000000010a6d8665 call_function + 533
32 org.python.python 0x000000010a6d546e _PyEval_EvalFrameDefault + 25678
33 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
34 org.python.python 0x000000010a6d860c call_function + 444
35 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
36 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
37 org.python.python 0x000000010a6d860c call_function + 444
38 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
39 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
40 org.python.python 0x000000010a6d860c call_function + 444
41 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
42 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
43 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
44 org.python.python 0x000000010a60ca9a method_vectorcall + 170
45 org.python.python 0x000000010a6d860c call_function + 444
46 org.python.python 0x000000010a6d5598 _PyEval_EvalFrameDefault + 25976
47 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
48 org.python.python 0x000000010a6d860c call_function + 444
49 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
50 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
51 org.python.python 0x000000010a6d860c call_function + 444
52 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
53 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
54 org.python.python 0x000000010a6d860c call_function + 444
55 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
56 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
57 org.python.python 0x000000010a6d860c call_function + 444
58 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
59 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
60 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
61 org.python.python 0x000000010a6d860c call_function + 444
62 org.python.python 0x000000010a6d5598 _PyEval_EvalFrameDefault + 25976
63 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
64 org.python.python 0x000000010a6d860c call_function + 444
65 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
66 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
67 org.python.python 0x000000010a6d860c call_function + 444
68 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
69 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
70 org.python.python 0x000000010a6d860c call_function + 444
71 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
72 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
73 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
74 org.python.python 0x000000010a60ca9a method_vectorcall + 170
75 org.python.python 0x000000010a6d860c call_function + 444
76 org.python.python 0x000000010a6d5598 _PyEval_EvalFrameDefault + 25976
77 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
78 org.python.python 0x000000010a6d860c call_function + 444
79 org.python.python 0x000000010a6d544a _PyEval_EvalFrameDefault + 25642
80 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
81 org.python.python 0x000000010a60cadb method_vectorcall + 235
82 org.python.python 0x000000010a609dad PyVectorcall_Call + 109
83 QtCore.abi3.so 0x0000000118d39957 PyQtSlot::call(_object*, _object*) const + 39
84 QtCore.abi3.so 0x0000000118d39866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
85 QtCore.abi3.so 0x0000000118d3a455 PyQtSlotProxy::unislot(void**) + 85
86 QtCore.abi3.so 0x0000000118d3a3ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
87 QtCore 0x000000011911df6e void doActivate(QObject*, int, void**) + 1118
88 QtCore 0x00000001191274c2 QTimer::timerEvent(QTimerEvent*) + 98
89 QtCore.abi3.so 0x0000000118c22bf9 sipQTimer::timerEvent(QTimerEvent*) + 121
90 QtCore 0x000000011911585f QObject::event(QEvent*) + 111
91 QtCore.abi3.so 0x0000000118c22a7a sipQTimer::event(QEvent*) + 186
92 QtWidgets 0x0000000119b8b9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
93 QtWidgets 0x0000000119b8ce11 QApplication::notify(QObject*, QEvent*) + 497
94 QtWidgets.abi3.so 0x000000011973edb9 sipQApplication::notify(QObject*, QEvent*) + 233
95 QtCore 0x00000001190eaa34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
96 QtCore 0x000000011915035f QTimerInfoList::activateTimers() + 991
97 libqcocoa.dylib 0x0000000129ce58f2 QCocoaEventDispatcherPrivate::activateTimersSourceCallback(void*) + 18
98 com.apple.CoreFoundation 0x00007fff30bbd155 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
99 com.apple.CoreFoundation 0x00007fff30bbd0fb __CFRunLoopDoSource0 + 108
100 com.apple.CoreFoundation 0x00007fff30ba0bed __CFRunLoopDoSources0 + 283
101 com.apple.CoreFoundation 0x00007fff30ba013e __CFRunLoopRun + 1219
102 com.apple.CoreFoundation 0x00007fff30b9fa28 CFRunLoopRunSpecific + 463
103 com.apple.HIToolbox 0x00007fff2fe38b35 RunCurrentEventLoopInMode + 293
104 com.apple.HIToolbox 0x00007fff2fe3886b ReceiveNextEventCommon + 618
105 com.apple.HIToolbox 0x00007fff2fe385e8 _BlockUntilNextEventMatchingListInModeWithFilter + 64
106 com.apple.AppKit 0x00007fff2e0f4eb7 _DPSNextEvent + 997
107 com.apple.AppKit 0x00007fff2e0f3c56 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
108 com.apple.AppKit 0x00007fff2e0edcb9 -[NSApplication run] + 699
109 libqcocoa.dylib 0x0000000129ce662f QCocoaEventDispatcher::processEvents(QFlags) + 2495
110 QtCore 0x00000001190e6acf QEventLoop::exec(QFlags) + 431
111 QtCore 0x00000001190eb042 QCoreApplication::exec() + 130
112 QtWidgets.abi3.so 0x0000000119830702 meth_QApplication_exec_(_object*, _object*) + 82
113 org.python.python 0x000000010a60a0c2 cfunction_call_varargs + 290
114 org.python.python 0x000000010a609a85 _PyObject_MakeTpCall + 373
115 org.python.python 0x000000010a6d8665 call_function + 533
116 org.python.python 0x000000010a6d546e _PyEval_EvalFrameDefault + 25678
117 org.python.python 0x000000010a60a3d0 function_code_fastcall + 128
118 org.python.python 0x000000010a60ca9a method_vectorcall + 170
119 org.python.python 0x000000010a6d860c call_function + 444
120 org.python.python 0x000000010a6d546e _PyEval_EvalFrameDefault + 25678
121 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
122 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
123 org.python.python 0x000000010a6d860c call_function + 444
124 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
125 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
126 org.python.python 0x000000010a6cef44 PyEval_EvalCode + 100
127 org.python.python 0x000000010a6cc332 builtin_exec + 626
128 org.python.python 0x000000010a6465ff cfunction_vectorcall_FASTCALL + 175
129 org.python.python 0x000000010a6d860c call_function + 444
130 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
131 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
132 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
133 org.python.python 0x000000010a6d860c call_function + 444
134 org.python.python 0x000000010a6d5505 _PyEval_EvalFrameDefault + 25829
135 org.python.python 0x000000010a6d9454 _PyEval_EvalCodeWithName + 2804
136 org.python.python 0x000000010a60a56e _PyFunction_Vectorcall + 270
137 org.python.python 0x000000010a609dad PyVectorcall_Call + 109
138 org.python.python 0x000000010a73beb3 pymain_run_module + 195
139 org.python.python 0x000000010a73b585 Py_RunMain + 1413
140 org.python.python 0x000000010a73bbdf pymain_main + 223
141 org.python.python 0x000000010a73baeb Py_Main + 43
142 edu.ucsf.cgl.ChimeraX 0x000000010a5dddc8 main + 120
143 libdyld.dylib 0x00007fff5dd9408d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblas.0.dylib 0x000000010c0f221f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblas.0.dylib 0x000000010c0f221f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblas.0.dylib 0x000000010c0f221f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff5ded48d6 kevent64 + 10
1 QtWebEngineCore 0x000000011d88ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011d88acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011d81ea94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d828778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011d829150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011d828c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5ded48d6 kevent64 + 10
1 QtWebEngineCore 0x000000011d88ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011d88acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000121757f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x000000011d877e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011eb2f5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
6 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
7 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d7a820f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5ded48d6 kevent64 + 10
1 QtWebEngineCore 0x000000011d88ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011d88acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d82876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011d829150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011d828d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 15:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d7a81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011d81362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011d7d77cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011d832a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
11 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d8802cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011d82876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011d828e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011d828c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff30ba0da2 __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff30ba02f1 __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff30b9fa28 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff2e0fdadd _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 19:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011d880492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011d828778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011d829150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011d828cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011d87be07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 20:
0 libsystem_pthread.dylib 0x00007fff5df85428 start_wqthread + 0
1 ??? 0x0000600036f4b518 0 + 105554038273304
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000116bd95c0 rcx: 0x000000010aa74a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x000000010aa74a80 rsp: 0x000000010aa74a48
r8: 0x000000010aa74f48 r9: 0x4ce0679452c8de00 r10: 0x0000000116bd966c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x00007fcc0b9cd818 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff5ded2b86 rfl: 0x0000000000000206 cr2: 0x0000000116bac070
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff5ddc5000 - 0x7fff5ddc6ff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5ddc7000 - 0x7fff5dddeff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5dddf000 - 0x7fff5dddffff libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5dde0000 - 0x7fff5de68fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff5de69000 - 0x7fff5de6cff7 libsystem_configuration.dylib (963.200.27) /usr/lib/system/libsystem_configuration.dylib
0x7fff5de6d000 - 0x7fff5de70ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5de71000 - 0x7fff5de77ffb libsystem_darwin.dylib (1272.200.26) /usr/lib/system/libsystem_darwin.dylib
0x7fff5de78000 - 0x7fff5de7eff7 libsystem_dnssd.dylib (878.200.35) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5de7f000 - 0x7fff5decbff3 libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5decc000 - 0x7fff5def3ff7 libsystem_kernel.dylib (4903.221.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff5def4000 - 0x7fff5df3fff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5df40000 - 0x7fff5df64ff7 libsystem_malloc.dylib (166.220.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5df65000 - 0x7fff5df70ff3 libsystem_networkextension.dylib (767.220.1) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5df71000 - 0x7fff5df78fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5df79000 - 0x7fff5df82fef libsystem_platform.dylib (177.200.16) /usr/lib/system/libsystem_platform.dylib
0x7fff5df83000 - 0x7fff5df8dfff libsystem_pthread.dylib (330.220.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5df8e000 - 0x7fff5df91ff7 libsystem_sandbox.dylib (851.220.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5df92000 - 0x7fff5df94ff3 libsystem_secinit.dylib (30.220.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff5df95000 - 0x7fff5df9cff7 libsystem_symptoms.dylib (820.227.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5df9d000 - 0x7fff5dfb2ff7 libsystem_trace.dylib (906.220.1) /usr/lib/system/libsystem_trace.dylib
0x7fff5dfb4000 - 0x7fff5dfb9ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5dfba000 - 0x7fff5dfeafff libxpc.dylib (1336.220.5) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 5
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 786125
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=810.5M resident=0K(0%) swapped_out_or_unallocated=810.5M(100%)
Writable regions: Total=147.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=147.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 2
CG backing stores 1160K 3
CG image 144K 17
CoreAnimation 108K 8
CoreGraphics 8K 2
CoreImage 24K 3
CoreUI image data 2524K 23
CoreUI image file 416K 7
Foundation 28K 3
Kernel Alloc Once 8K 2
MALLOC 146.3G 279
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 128.4M 3 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 2 reserved VM address space (unallocated)
Mach message 24K 3
Memory Tag 242 12K 2
OpenGL GLSL 384K 6
STACK GUARD 80K 21
Stack 130.7M 22
Stack Guard 56.0M 2
VM_ALLOCATE 376.6M 72
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 47.3M 476
__FONT_DATA 4K 2
__GLSLBUILTINS 5176K 2
__LINKEDIT 307.4M 140
__TEXT 503.1M 454
__UNICODE 564K 2
mapped file 84.8M 104
shared memory 5212K 23
=========== ======= =======
TOTAL 148.1G 1666
TOTAL, minus reserved VM space 147.8G 1666
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/kpwu/Documents/Research-IBC-AS/project-synuclein in
> calcium/maps/aSyn-Ca-model-0525-fiber-700.pdb"
Summary of feedback from opening /Users/kpwu/Documents/Research-IBC-
AS/project-synuclein in calcium/maps/aSyn-Ca-model-0525-fiber-700.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Created by DsigNA
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
9654495 messages similar to the above omitted
Chain information for aSyn-Ca-model-0525-fiber-700.pdb #1
---
Chain | Description
A B C D E F G M O P Q R S T U | No description available
OpenGL version: 4.1 INTEL-12.2.17
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.14.1 (18B75)
Kernel Version: Darwin 18.2.0
Time since boot: 18 days 4:27
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-Clipper: 0.15.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-ISOLDE: 1.1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Mac graphics driver crashed. Unfortunately Apple's OpenGL graphics drivers are not very stable. We do not have any solution for that. Crash report says
Graphics hardware encountered an error and was reset: 0x00000813
Often driver crashes are associated with high graphics memory use. ChimeraX was using a huge 148 Gbytes of memory when it crashed so it is easy to imagine that the driver crashed when trying to display too many triangles. Not sure that memory use report from Apple's crash report is correct since your machine has only 16 Gbytes of memory. Unfortunately Apple's driver doesn't report an error in these circumstances, it just crashes.