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#4652 closed defect (duplicate)

KeyError in map menu

Reported by:	zlwatson@…	Owned by:	pett
Priority:	normal	Milestone:
Component:	General Controls	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-5.4.0-71-generic-x86_64-with-debian-buster-sid
ChimeraX Version: 0.91 (2019-10-24)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warnings | QXcbConnection: XCB error: 148 (Unknown), sequence: 219, resource
id: 0, major code: 140 (Unknown), minor code: 20  
QXcbConnection: XCB error: 148 (Unknown), sequence: 240, resource id: 0, major
code: 140 (Unknown), minor code: 20  
  
UCSF ChimeraX version: 0.91 (2019-10-24)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /media/RAIDA/zoe/21Apr29/Refine3D/Asite-50Sfoc/run_ct19_class001.mrc

Opened run_ct19_class001.mrc, grid size 496,496,496, pixel 0.71, shown at
level 0.0137, step 2, values float32  

> close #1.1#1

> open /media/RAIDA/zoe/21Apr29/PostProcess/Asite-50S-foc/postprocess.mrc

Opened postprocess.mrc, grid size 496,496,496, pixel 0.71, shown at level
0.0245, step 2, values float32  

> open
/media/RAIDA/zoe/21Apr29/PostProcess/Asite-50S-foc/postprocess_masked.mrc

Opened postprocess_masked.mrc, grid size 496,496,496, pixel 0.71, shown at
level 0.0229, step 2, values float32  

> hide #!1 models

> open /media/RAIDA/zoe/21Apr29/50S-fM+F-docked-in-chimera.pdb

Summary of feedback from opening /media/RAIDA/zoe/21Apr29/50S-fM+F-docked-in-
chimera.pdb  
---  
warnings | Ignored bad PDB record found on line 265  
DEVIATIONS FROM IDEAL VALUES.  
  
Ignored bad PDB record found on line 266  
MOLPROBITY STATISTICS.  
  
Chain information for 50S-fM+F-docked-in-chimera.pdb #3  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
W | No description available  
X | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  
Must specify one map, got 0  

> fitmap #3 inMap #2

Fit molecule 50S-fM+F-docked-in-chimera.pdb (#3) to map postprocess_masked.mrc
(#2) using 90128 atoms  
average map value = 0.008857, steps = 52  
shifted from previous position = 0.7  
rotated from previous position = 0.271 degrees  
atoms outside contour = 75625, contour level = 0.024737  
  
Position of 50S-fM+F-docked-in-chimera.pdb (#3) relative to
postprocess_masked.mrc (#2) coordinates:  
Matrix rotation and translation  
0.99998889 0.00277328 0.00381079 -1.02463259  
-0.00277508 0.99999604 0.00046821 1.09976112  
-0.00380947 -0.00047878 0.99999263 0.64148864  
Axis -0.09996037 0.80436639 -0.58566427  
Axis point 261.88864573 0.00000000 253.60438768  
Rotation angle (degrees) 0.27140007  
Shift along axis 0.61133655  
  

> ui mousemode rightMode select

> select up

493 atoms, 545 bonds, 1 model selected  

> select up

62453 atoms, 69919 bonds, 1 model selected  

> select down

493 atoms, 545 bonds, 1 model selected  

> select clear

> select up

238 atoms, 263 bonds, 1 model selected  

> select up

62324 atoms, 69788 bonds, 1 model selected  

> select clear

> select up

344 atoms, 380 bonds, 1 model selected  

> select up

3194 atoms, 3563 bonds, 1 model selected  

> surface zone #2 nearAtoms sel distance 4

> hide ~sel

> style sel stick

Changed 3194 atom styles  

> transparency #2.1 50

> color sel byhetero

> toolshed show "Model Panel"

> view #!3 clip false

> show #!3 target m

> help help:user/tools/modelpanel.html

> toolshed show "Map Coordinates"

> open /media/RAIDA/zoe/21Apr29/50S-fM+Abz-rsr.pdb

Summary of feedback from opening /media/RAIDA/zoe/21Apr29/50S-fM+Abz-rsr.pdb  
---  
warnings | Ignored bad PDB record found on line 20  
  
  
Ignored bad PDB record found on line 21  
DEVIATIONS FROM IDEAL VALUES.  
  
Ignored bad PDB record found on line 22  
BOND : 0.012 0.260 98257  
  
Ignored bad PDB record found on line 23  
ANGLE : 2.087 23.781 147635  
  
Ignored bad PDB record found on line 24  
CHIRALITY : 0.095 0.939 18914  
  
17 messages similar to the above omitted  
  
Chain information for 50S-fM+Abz-rsr.pdb #4  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
W | No description available  
X | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> fitmap #4 inMap #2

Fit molecule 50S-fM+Abz-rsr.pdb (#4) to map postprocess_masked.mrc (#2) using
90128 atoms  
average map value = 0.01559, steps = 44  
shifted from previous position = 0.00326  
rotated from previous position = 0.00496 degrees  
atoms outside contour = 69119, contour level = 0.024737  
  
Position of 50S-fM+Abz-rsr.pdb (#4) relative to postprocess_masked.mrc (#2)
coordinates:  
Matrix rotation and translation  
1.00000000 -0.00007465 -0.00004057 0.01858547  
0.00007464 1.00000000 -0.00001686 -0.00760356  
0.00004057 0.00001685 1.00000000 -0.00867686  
Axis 0.19458951 -0.46843060 0.86180490  
Axis point 103.75300397 249.76018493 0.00000000  
Rotation angle (degrees) 0.00496264  
Shift along axis -0.00029948  
  

> select #3

90128 atoms, 98252 bonds, 6 pseudobonds, 2 models selected  

> ~select #3

Nothing selected  

> hide #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> show #2,4#1.1#3.1#!1,3 target m

> hide #!3 models

> close #3

> close #2,4#1.1#1

> open /media/RAIDA/zoe/21Apr29/50S-fM+Abz-rsr.pdb

Summary of feedback from opening /media/RAIDA/zoe/21Apr29/50S-fM+Abz-rsr.pdb  
---  
warnings | Ignored bad PDB record found on line 20  
  
  
Ignored bad PDB record found on line 21  
DEVIATIONS FROM IDEAL VALUES.  
  
Ignored bad PDB record found on line 22  
BOND : 0.012 0.260 98257  
  
Ignored bad PDB record found on line 23  
ANGLE : 2.087 23.781 147635  
  
Ignored bad PDB record found on line 24  
CHIRALITY : 0.095 0.939 18914  
  
17 messages similar to the above omitted  
  
Chain information for 50S-fM+Abz-rsr.pdb #1  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
W | No description available  
X | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
/media/RAIDA/zoe/21Apr29/PostProcess/Asite-50S-foc/fM+Abz-50S-ppmasked.mrc

Opened fM+Abz-50S-ppmasked.mrc, grid size 496,496,496, pixel 0.71, shown at
level 0.0229, step 2, values float32  

> lighting simple

> fitmap #1 inMap #2

Fit molecule 50S-fM+Abz-rsr.pdb (#1) to map fM+Abz-50S-ppmasked.mrc (#2) using
90128 atoms  
average map value = 0.01559, steps = 44  
shifted from previous position = 0.00326  
rotated from previous position = 0.00496 degrees  
atoms outside contour = 67662, contour level = 0.02289  
  
Position of 50S-fM+Abz-rsr.pdb (#1) relative to fM+Abz-50S-ppmasked.mrc (#2)
coordinates:  
Matrix rotation and translation  
1.00000000 -0.00007465 -0.00004057 0.01858547  
0.00007464 1.00000000 -0.00001686 -0.00760356  
0.00004057 0.00001685 1.00000000 -0.00867686  
Axis 0.19458951 -0.46843060 0.86180490  
Axis point 103.75300397 249.76018493 0.00000000  
Rotation angle (degrees) 0.00496264  
Shift along axis -0.00029948  
  

> hide #!2 models

> select up

111 atoms, 122 bonds, 1 model selected  

> select up

3161 atoms, 3528 bonds, 1 model selected  

> show #!2 models

> surface zone #2 nearAtoms sel distance 4

> hide ~sel

> style sel stick

Changed 3161 atom styles  

> transparency 50

> select clear

> color byhetero

> show #2#1.1#!1 target m

> show #!2 target m

> show #!2 target m

> show #!2 target m

> show #!2 target m

> show ~sel

> surface zone #2 nearAtoms sel distance 4

No atoms specified  

> select #1

90128 atoms, 98252 bonds, 5 pseudobonds, 2 models selected  

> ~select #1

Nothing selected  

> select #2

2 models selected  

> ~select #2

Nothing selected  

> show #!2 target m

> rainbow

> show cartoons

> hide atoms

> select /a:709

20 atoms, 21 bonds, 1 model selected  

> select up

59130 atoms, 66225 bonds, 1 model selected  

> select up

59284 atoms, 66364 bonds, 1 model selected  

> select up

90128 atoms, 98252 bonds, 1 model selected  

> surface zone #2 nearAtoms sel distance 4

> select #1

90128 atoms, 98252 bonds, 5 pseudobonds, 2 models selected  

> select clear

> select #2

2 models selected  

> select #2

2 models selected  

> ~select #2

Nothing selected  

> select /A:2-75

1603 atoms, 1790 bonds, 1 model selected  

> select /A:2-76

1625 atoms, 1814 bonds, 1 model selected  

> select /A:2-77

1635 atoms, 1824 bonds, 1 model selected  

> surface zone #2 nearAtoms sel distance 4

> hide ~sel

> hide ~sel

> style sel stick

Changed 1635 atom styles  

> style sel stick

Changed 1635 atom styles  

> hide ~sel

> select /A:26

23 atoms, 25 bonds, 1 model selected  

> select /A:26

23 atoms, 25 bonds, 1 model selected  

> select up

1603 atoms, 1790 bonds, 1 model selected  

> select up

1635 atoms, 1824 bonds, 1 model selected  

> style sel stick

Changed 1635 atom styles  

> hide sel cartoons

> show sel atoms

> select /A:74@C3'

1 atom, 1 model selected  

> select /A:2-77

1635 atoms, 1824 bonds, 1 model selected  

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide ~sel

> hide ~sel

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide ~sel cartoons

> select clear

> toolshed show "Map Coordinates"

> select clear

> open
/media/RAIDA/zoe/21Apr29/P15/J9/cryosparc_P15_J9_008_volume_map_sharp.mrc

Opened cryosparc_P15_J9_008_volume_map_sharp.mrc, grid size 496,496,496, pixel
0.71, shown at level 0.669, step 2, values float32  

> hide #!2 models

> hide #!1 models

> open /media/RAIDA/zoe/21Apr29/PostProcess/job057/fM+Abz-50S-ppmasked.mrc

Opened fM+Abz-50S-ppmasked.mrc, grid size 496,496,496, pixel 0.71, shown at
level 0.0229, step 2, values float32  

> tile #3 #4

> close #1-3#4.1#4

> open /media/RAIDA/zoe/21Apr29/124-init-model.mrc

Opened 124-init-model.mrc, grid size 124,124,124, pixel 2.84, shown at level
6.99, step 1, values float32  

> save /media/RAIDA/zoe/21Apr29/124-2p8472-initmodel.mrc models #1

> close #1.1#1

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  

> open /media/RAIDA/zoe/21Apr29/124-2p8472-initmodel.mrc

Opened 124-2p8472-initmodel.mrc, grid size 124,124,124, pixel 2.85, shown at
level 6.99, step 1, values float32  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "add models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  

> hide #1.1#!1 target m

> close #1.1#1

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  

> open
/media/RAIDA/zoe/21Apr29/P15/J12/cryosparc_P15_J12_class_00_00082_volume.mrc

Opened cryosparc_P15_J12_class_00_00082_volume.mrc, grid size 124,124,124,
pixel 2.85, shown at level 1.89, step 1, values float32  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "add models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 291, in _items_change  
prev_value = self.value  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
KeyError: '124-init-model.mrc #1'  
  
Error processing trigger "remove models":  
KeyError: '124-init-model.mrc #1'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/ui/widgets/item_chooser.py", line 259, in value  
return self.item_map[text]  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 450.102.04
OpenGL renderer: GeForce RTX 2080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 4 years ago

Component:	Unassigned → General Controls
Owner:	set to pett
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → KeyError in map menu

comment:2 by pett, 4 years ago

Resolution:	→ duplicate
Status:	accepted → closed

Hi Zoe,

I'm fairly certain that this is fixed in the latest release of ChimeraX. So you should get that and besides, it also has a whole bunch of improvements and new features!

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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