The following bug report has been submitted:
Platform: macOS-10.14.1-x86_64-i386-64bit
ChimeraX Version: 1.3.dev202105160642 (2021-05-16 06:42:00 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [27867]
Path: /Applications/Science/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [27867]
User ID: 501
Date/Time: 2021-05-21 16:45:47.739 +0800
OS Version: Mac OS X 10.14.1 (18B75)
Report Version: 12
Bridge OS Version: 5.2 (18P4347)
Anonymous UUID: 46243032-1D8F-9011-9F9C-AF784B976DB6
Sleep/Wake UUID: 15CFC3B1-8367-4DAF-895E-014F2F827348
Time Awake Since Boot: 440000 seconds
Time Since Wake: 4200 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5ded2b86 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5df88c50 pthread_kill + 285
2 libsystem_c.dylib 0x00007fff5ddef096 raise + 26
3 libsystem_platform.dylib 0x00007fff5df7db3d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff5de3c1c9 abort + 127
6 libGPUSupportMercury.dylib 0x00007fff4c67f1c5 gpusGenerateCrashLog + 168
7 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff29f04d42 gpusKillClientExt + 9
8 libGPUSupportMercury.dylib 0x00007fff4c6806da gpusSubmitDataBuffers + 495
9 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff293750f4 IntelCommandBuffer::getNew(GLDContextRec*) + 48
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff29374f0a intelSubmitCommands + 171
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2937bc5c glrWriteBufferData + 1411
12 GLEngine 0x00007fff3ad2e2d5 glBufferSubData_Exec + 605
13 _ctypes.cpython-37m-darwin.so 0x0000000113aefe17 ffi_call_unix64 + 79
14 _ctypes.cpython-37m-darwin.so 0x0000000113af06a5 ffi_call + 901
15 _ctypes.cpython-37m-darwin.so 0x0000000113aeaf62 _ctypes_callproc + 882
16 _ctypes.cpython-37m-darwin.so 0x0000000113ae46dc PyCFuncPtr_call + 1196
17 org.python.python 0x000000010827a9d8 PyObject_Call + 136
18 org.python.python 0x00000001082cd916 slot_tp_call + 198
19 wrapper.cpython-37m-darwin.so 0x000000011468f181 __Pyx_PyObject_Call + 97
20 wrapper.cpython-37m-darwin.so 0x000000011469c28d __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 765
21 latebind.cpython-37m-darwin.so 0x00000001146f8fa1 __Pyx_PyObject_Call + 97
22 latebind.cpython-37m-darwin.so 0x00000001146f8522 __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 306
23 org.python.python 0x000000010827a6df _PyObject_FastCallKeywords + 575
24 org.python.python 0x000000010834fbcd call_function + 765
25 org.python.python 0x000000010834c8ae _PyEval_EvalFrameDefault + 26718
26 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
27 org.python.python 0x000000010827a377 _PyFunction_FastCallDict + 455
28 latebind.cpython-37m-darwin.so 0x00000001146f8fa1 __Pyx_PyObject_Call + 97
29 latebind.cpython-37m-darwin.so 0x00000001146fa393 __pyx_pw_17OpenGL_accelerate_8latebind_5Curry_3__call__ + 131
30 org.python.python 0x000000010827a6df _PyObject_FastCallKeywords + 575
31 org.python.python 0x000000010834fbcd call_function + 765
32 org.python.python 0x000000010834c817 _PyEval_EvalFrameDefault + 26567
33 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
34 org.python.python 0x000000010827a879 _PyFunction_FastCallKeywords + 217
35 org.python.python 0x000000010834fbd4 call_function + 772
36 org.python.python 0x000000010834c7fa _PyEval_EvalFrameDefault + 26538
37 org.python.python 0x000000010827ad61 function_code_fastcall + 177
38 org.python.python 0x000000010834fbd4 call_function + 772
39 org.python.python 0x000000010834c7fa _PyEval_EvalFrameDefault + 26538
40 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
41 org.python.python 0x000000010827a879 _PyFunction_FastCallKeywords + 217
42 org.python.python 0x000000010834fbd4 call_function + 772
43 org.python.python 0x00000001083465c4 _PyEval_EvalFrameDefault + 1396
44 org.python.python 0x000000010827ad61 function_code_fastcall + 177
45 org.python.python 0x000000010834fbd4 call_function + 772
46 org.python.python 0x000000010834c7fa _PyEval_EvalFrameDefault + 26538
47 org.python.python 0x000000010827ad61 function_code_fastcall + 177
48 org.python.python 0x000000010827b873 _PyObject_Call_Prepend + 131
49 org.python.python 0x000000010827a9d8 PyObject_Call + 136
50 QtCore.so 0x00000001166daf17 PyQtSlot::call(_object*, _object*) const + 39
51 QtCore.so 0x00000001166dae26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
52 QtCore.so 0x00000001166db925 PyQtSlotProxy::unislot(void**) + 85
53 QtCore.so 0x00000001166db89a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
54 QtCore 0x00000001161ad13d QMetaObject::activate(QObject*, int, int, void**) + 1773
55 QtCore 0x00000001161b51f2 QTimer::timerEvent(QTimerEvent*) + 98
56 QtCore.so 0x00000001165d1028 sipQTimer::timerEvent(QTimerEvent*) + 120
57 QtCore 0x00000001161a5ab6 QObject::event(QEvent*) + 102
58 QtCore.so 0x00000001165d0e9b sipQTimer::event(QEvent*) + 187
59 QtWidgets 0x000000011549067d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
60 QtWidgets 0x0000000115491a82 QApplication::notify(QObject*, QEvent*) + 594
61 QtWidgets.so 0x00000001150503ca sipQApplication::notify(QObject*, QEvent*) + 234
62 QtCore 0x000000011617c324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
63 QtCore 0x00000001161d593f QTimerInfoList::activateTimers() + 991
64 libqcocoa.dylib 0x0000000117b10032 0x117adb000 + 217138
65 com.apple.CoreFoundation 0x00007fff30bbd155 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
66 com.apple.CoreFoundation 0x00007fff30bbd0fb __CFRunLoopDoSource0 + 108
67 com.apple.CoreFoundation 0x00007fff30ba0b95 __CFRunLoopDoSources0 + 195
68 com.apple.CoreFoundation 0x00007fff30ba013e __CFRunLoopRun + 1219
69 com.apple.CoreFoundation 0x00007fff30b9fa28 CFRunLoopRunSpecific + 463
70 com.apple.HIToolbox 0x00007fff2fe38b35 RunCurrentEventLoopInMode + 293
71 com.apple.HIToolbox 0x00007fff2fe3886b ReceiveNextEventCommon + 618
72 com.apple.HIToolbox 0x00007fff2fe385e8 _BlockUntilNextEventMatchingListInModeWithFilter + 64
73 com.apple.AppKit 0x00007fff2e0f4eb7 _DPSNextEvent + 997
74 com.apple.AppKit 0x00007fff2e0f3c56 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
75 com.apple.AppKit 0x00007fff2e0edcb9 -[NSApplication run] + 699
76 libqcocoa.dylib 0x0000000117b10de3 0x117adb000 + 220643
77 QtCore 0x000000011617793f QEventLoop::exec(QFlags) + 431
78 QtCore 0x000000011617c932 QCoreApplication::exec() + 130
79 QtWidgets.so 0x000000011513f7d2 meth_QApplication_exec_(_object*, _object*) + 82
80 org.python.python 0x000000010827b382 _PyMethodDef_RawFastCallKeywords + 226
81 org.python.python 0x000000010827a8b9 _PyCFunction_FastCallKeywords + 41
82 org.python.python 0x000000010834fb60 call_function + 656
83 org.python.python 0x000000010834c817 _PyEval_EvalFrameDefault + 26567
84 org.python.python 0x000000010827ad61 function_code_fastcall + 177
85 org.python.python 0x000000010834fbd4 call_function + 772
86 org.python.python 0x000000010834c817 _PyEval_EvalFrameDefault + 26567
87 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
88 org.python.python 0x000000010827a879 _PyFunction_FastCallKeywords + 217
89 org.python.python 0x000000010834fbd4 call_function + 772
90 org.python.python 0x000000010834c8ae _PyEval_EvalFrameDefault + 26718
91 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
92 org.python.python 0x0000000108345fb0 PyEval_EvalCode + 48
93 org.python.python 0x0000000108343547 builtin_exec + 583
94 org.python.python 0x000000010827b52d _PyMethodDef_RawFastCallKeywords + 653
95 org.python.python 0x000000010827a8b9 _PyCFunction_FastCallKeywords + 41
96 org.python.python 0x000000010834fb60 call_function + 656
97 org.python.python 0x000000010834c8ae _PyEval_EvalFrameDefault + 26718
98 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
99 org.python.python 0x000000010827a879 _PyFunction_FastCallKeywords + 217
100 org.python.python 0x000000010834fbd4 call_function + 772
101 org.python.python 0x000000010834c8ae _PyEval_EvalFrameDefault + 26718
102 org.python.python 0x0000000108350a2c _PyEval_EvalCodeWithName + 3276
103 org.python.python 0x000000010827a377 _PyFunction_FastCallDict + 455
104 org.python.python 0x00000001083aaaf3 pymain_run_module + 147
105 org.python.python 0x00000001083a9bdc pymain_main + 5900
106 org.python.python 0x00000001083a84c3 Py_Main + 51
107 edu.ucsf.cgl.ChimeraX 0x000000010824ddc8 main + 120
108 libdyld.dylib 0x00007fff5dd9408d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000109d0bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000109d0bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000109d0bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff30ba0da2 __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff30ba02f1 __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff30b9fa28 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff2e0fdadd _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a22c05d 0x1180d6000 + 34955357
5 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5ded3052 kevent + 10
1 QtWebEngineCore 0x000000011a5399a9 0x1180d6000 + 38156713
2 QtWebEngineCore 0x000000011a536cbd 0x1180d6000 + 38145213
3 QtWebEngineCore 0x000000011a2edcdc 0x1180d6000 + 35749084
4 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
5 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
6 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5ded3052 kevent + 10
1 QtWebEngineCore 0x000000011a5399a9 0x1180d6000 + 38156713
2 QtWebEngineCore 0x000000011a536cbd 0x1180d6000 + 38145213
3 QtWebEngineCore 0x000000011a2edcc4 0x1180d6000 + 35749060
4 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
5 QtWebEngineCore 0x000000011a296a74 0x1180d6000 + 35392116
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a2902c4 0x1180d6000 + 35365572
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a2902c4 0x1180d6000 + 35365572
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 10:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a2902c4 0x1180d6000 + 35365572
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 11:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a2903bf 0x1180d6000 + 35365823
6 QtWebEngineCore 0x000000011a2902c4 0x1180d6000 + 35365572
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 12:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a290234 0x1180d6000 + 35365428
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 13:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a290234 0x1180d6000 + 35365428
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 14:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5ded3052 kevent + 10
1 QtWebEngineCore 0x000000011a5399a9 0x1180d6000 + 38156713
2 QtWebEngineCore 0x000000011a536cbd 0x1180d6000 + 38145213
3 QtWebEngineCore 0x000000011a2edcc4 0x1180d6000 + 35749060
4 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
5 QtWebEngineCore 0x0000000119bc3fe4 0x1180d6000 + 28237796
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 15:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a28fd1a 0x1180d6000 + 35364122
5 QtWebEngineCore 0x000000011a2903bf 0x1180d6000 + 35365823
6 QtWebEngineCore 0x000000011a290264 0x1180d6000 + 35365476
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 16:: CompositorTileWorker1/73219
0 libsystem_kernel.dylib 0x00007fff5ded01b2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5df895cb _pthread_cond_wait + 724
2 QtWebEngineCore 0x000000011a2e5fa8 0x1180d6000 + 35717032
3 QtWebEngineCore 0x000000011b26c4c8 0x1180d6000 + 51995848
4 QtWebEngineCore 0x000000011a2a6694 0x1180d6000 + 35456660
5 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
6 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 17:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a22c05d 0x1180d6000 + 34955357
5 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a22c05d 0x1180d6000 + 34955357
5 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 19:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a22c052 0x1180d6000 + 34955346
4 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
5 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
6 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 20:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5ded3052 kevent + 10
1 QtWebEngineCore 0x000000011a5399a9 0x1180d6000 + 38156713
2 QtWebEngineCore 0x000000011a536cbd 0x1180d6000 + 38145213
3 QtWebEngineCore 0x000000011a2edcdc 0x1180d6000 + 35749084
4 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
5 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
6 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 21:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a28fd1a 0x1180d6000 + 35364122
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a290324 0x1180d6000 + 35365668
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a27822f 0x1180d6000 + 35267119
4 QtWebEngineCore 0x000000011a22c05d 0x1180d6000 + 34955357
5 QtWebEngineCore 0x000000011a255085 0x1180d6000 + 35123333
6 QtWebEngineCore 0x000000011a2a79bc 0x1180d6000 + 35461564
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 23:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a29065b 0x1180d6000 + 35366491
6 QtWebEngineCore 0x000000011a290234 0x1180d6000 + 35365428
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5deccc2a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5decd174 mach_msg + 60
2 QtWebEngineCore 0x000000011a27832d 0x1180d6000 + 35267373
3 QtWebEngineCore 0x000000011a278421 0x1180d6000 + 35267617
4 QtWebEngineCore 0x000000011a28fd28 0x1180d6000 + 35364136
5 QtWebEngineCore 0x000000011a2903bf 0x1180d6000 + 35365823
6 QtWebEngineCore 0x000000011a2902c4 0x1180d6000 + 35365572
7 QtWebEngineCore 0x000000011a2e7717 0x1180d6000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5df86339 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5df892a7 _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff5df85445 thread_start + 13
Thread 25:
0 libsystem_pthread.dylib 0x00007fff5df85428 start_wqthread + 0
1 ??? 0x0000000000001303 0 + 4867
Thread 26:
0 libsystem_pthread.dylib 0x00007fff5df85428 start_wqthread + 0
1 ??? 0x0000600046a6af70 0 + 105554301595504
Thread 27:
0 libsystem_pthread.dylib 0x00007fff5df85428 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001180ab5c0 rcx: 0x00000001086c7a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00000001086c7a80 rsp: 0x00000001086c7a48
r8: 0x00000001086c7f48 r9: 0xbcda31fb9dd3371d r10: 0x00000001180ab66c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x00007fce9b4bb818 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff5ded2b86 rfl: 0x0000000000000206 cr2: 0x00000001084b5f7c
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x108ee2000 - 0x108eebffb +_socket.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so
0x108f3d000 - 0x108f40fff +select.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so
0x108f4b000 - 0x108f4fffb +_struct.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so
0x108f5d000 - 0x108f61ff7 +binascii.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so
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0x1091b7000 - 0x1091b8ff3 +_queue.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
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0x113e68000 - 0x113ebcfff +_bounded_integers.cpython-37m-darwin.so (0) /Applications/Science/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bounded_integers.cpython-37m-darwin.so
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0x7fff5df83000 - 0x7fff5df8dfff libsystem_pthread.dylib (330.220.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5df8e000 - 0x7fff5df91ff7 libsystem_sandbox.dylib (851.220.9) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5df92000 - 0x7fff5df94ff3 libsystem_secinit.dylib (30.220.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff5df95000 - 0x7fff5df9cff7 libsystem_symptoms.dylib (820.227.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5df9d000 - 0x7fff5dfb2ff7 libsystem_trace.dylib (906.220.1) /usr/lib/system/libsystem_trace.dylib
0x7fff5dfb4000 - 0x7fff5dfb9ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5dfba000 - 0x7fff5dfeafff libxpc.dylib (1336.220.5) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 4
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 445028
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=706.5M resident=0K(0%) swapped_out_or_unallocated=706.5M(100%)
Writable regions: Total=11.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=11.8G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 2
CG backing stores 672K 4
CG image 20K 5
CoreAnimation 32K 6
CoreGraphics 8K 2
CoreImage 8K 3
CoreUI image data 536K 10
CoreUI image file 404K 6
Foundation 4K 2
Kernel Alloc Once 8K 2
MALLOC 10.5G 100
MALLOC guard page 32K 9
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
OpenGL GLSL 512K 7
PROTECTED_MEMORY 4K 2
STACK GUARD 108K 28
Stack 171.7M 29
Stack Guard 56.0M 2
VM_ALLOCATE 935.3M 140
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 44.9M 462
__FONT_DATA 4K 2
__GLSLBUILTINS 5176K 2
__LINKEDIT 239.7M 136
__TEXT 466.9M 439
__UNICODE 564K 2
mapped file 86.2M 37
shared memory 648K 15
=========== ======= =======
TOTAL 12.6G 1433
TOTAL, minus reserved VM space 12.5G 1433
Log:
UCSF ChimeraX version: 1.3.dev202105160642 (2021-05-16)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/kpwu/Documents/Research-IBC-AS/project-synuclein in
> calcium/maps/aSyn-no-Ca-model-0527-fiber.pdb"
Summary of feedback from opening /Users/kpwu/Documents/Research-IBC-
AS/project-synuclein in calcium/maps/aSyn-no-Ca-model-0527-fiber.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Created by DsigNA
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
1230795 messages similar to the above omitted
Chain information for aSyn-no-Ca-model-0527-fiber.pdb #1
---
Chain | Description
A B C E M N O R | No description available
D P | No description available
OpenGL version: 4.1 INTEL-12.2.17
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.14.1 (18B75)
Kernel Version: Darwin 18.2.0
Time since boot: 14 days 20:06
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
DELL P2719H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: DRT2LS2
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Automatically Adjust Brightness: No
DELL P2719H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 2S0TKS2
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DVI or HDMI
Adapter Firmware Version: 0.00
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.4.1
chardet: 4.0.0
ChimeraX-AddCharge: 1.1.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.20.1
ChimeraX-AtomicLibrary: 3.2.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.3
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3.dev202105160642
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.9.3
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.23
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.20
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 2.11.3
jupyter-client: 6.1.12
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 1.1.1
matplotlib: 3.4.2
matplotlib-inline: 0.1.2
msgpack: 1.0.2
netCDF4: 1.5.6
networkx: 2.5.1
numexpr: 2.7.3
numpy: 1.20.3
numpydoc: 1.1.0
openvr: 1.16.801
packaging: 20.9
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.2.0
pip: 21.1.1
pkginfo: 1.7.0
prompt-toolkit: 3.0.18
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.9.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 5.1.0
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.25.1
scipy: 1.6.3
setuptools: 56.2.0
sfftk-rw: 0.6.7.dev1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.3.0
Sphinx: 4.0.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.26.4
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.2
wheel-filename: 1.3.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Typical Apple Intel graphics driver crash, large amount of data open 12 Gbytes. Also using 2 displays, and old macOS Mojave (10.14) two versions behind on a 2018 MacBook Pro. I wonder if 2 displays makes the graphics crashes more likely.
Odd that there is no Python traceback in ChimeraX 1.3 daily.