Opened 4 years ago

Closed 4 years ago

Last modified 4 years ago

#4660 closed defect (can't reproduce)

Crash during dynamic linking under Rosetta emulation

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Platform Version:
Keywords: Cc: pett
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.2 (2021-05-08 05:48:20 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process:               ChimeraX [31020]
Path:                  /private/var/folders/*/ChimeraX-1.2.2.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.2.2 (1.2.2.0)
Code Type:             X86-64 (Translated)
Parent Process:        ??? [1]
Responsible:           ChimeraX [31020]
User ID:               503

Date/Time:             2021-05-11 14:21:14.433 +0100
OS Version:            macOS 11.3.1 (20E241)
Report Version:        12
Anonymous UUID:        B123C470-7887-7E5F-684A-F00BB17AF426

Sleep/Wake UUID:       195E8F71-9D2A-467A-A92D-E2172AB65D0A

Time Awake Since Boot: 420000 seconds
Time Since Wake:       15000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x000000010915b018
Exception Note:        EXC_CORPSE_NOTIFY

Termination Signal:    Bus error: 10
Termination Reason:    Namespace SIGNAL, Code 0xa
Terminating Process:   exc handler [31020]

VM Regions Near 0x10915b018:
    Rosetta Generic             10915a000-10915b000    [    4K] rw-/rwx SM=PRV  
--> mapped file                 10915b000-109392000    [ 2268K] r-x/rwx SM=COW  Object_id=ab971e11
    mapped file                 109392000-1093cc000    [  232K] rw-/rwx SM=COW  Object_id=ac628111

Thread 0 Crashed:: CrBrowserMain  Dispatch queue: com.apple.main-thread
0   dyld                          	0x0000000200fd2750 ImageLoaderMachO::usesTwoLevelNameSpace() const + 8
1   	0x0000000100f1764c ???
2   dyld                          	0x0000000200fddf8d ImageLoaderMachOCompressed::doBindFastLazySymbol(unsigned int, ImageLoader::LinkContext const&, void (*)(), void (*)()) + 45
3   dyld                          	0x0000000200fbc551 dyld::fastBindLazySymbol(ImageLoader**, unsigned long) + 86
4   libdyld.dylib                 	0x00007fff20330ce8 _dyld_fast_stub_entry(void*, long) + 65
5   libdyld.dylib                 	0x00007fff20330c26 dyld_stub_binder + 282
6   ???                           	0x00000001093921b8 ???
7   select.cpython-38-darwin.so   	000000000000000000 0 + 0
8   ???                           	0x0000600001502fc0 ???

Thread 1:: com.apple.rosetta.exceptionserver
0   runtime                       	0x00007ffdffbdb878 0x7ffdffbda000 + 6264
1   runtime                       	0x00007ffdffbe5d70 0x7ffdffbda000 + 48496
2   runtime                       	0x00007ffdffbe6a40 0x7ffdffbda000 + 51776

Thread 2:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 3:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 4:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 5:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 6:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 7:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 8:
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000010b25727b ???
3   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 9:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 10:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 11:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 12:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 13:: ThreadPoolServiceThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202ea1ea kevent64 + 10
2   ???                           	0x000000012af04cc7 ???
3   ???                           	0x000000012ae8d62b ???
4   ???                           	0x000000012ae517cb ???
5   ???                           	0x000000012ae98a94 ???
6   ???                           	0x000000012aeaca7d ???
7   ???                           	0x000000012aef5e07 ???
8   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 14:: ThreadPoolBackgroundWorker
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aea2778 ???
4   ???                           	0x000000012aea3150 ???
5   ???                           	0x000000012aea2c44 ???
6   ???                           	0x000000012aef5e07 ???
7   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 15:: Chrome_IOThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202ea1ea kevent64 + 10
2   ???                           	0x000000012af04cc7 ???
3   ???                           	0x000000012ae8d62b ???
4   ???                           	0x000000012ae517cb ???
5   ???                           	0x000000012edd1f06 ???
6   ???                           	0x000000012aeaca7d ???
7   ???                           	0x000000012aef5e07 ???
8   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 16:: NetworkConfigWatcher
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 17:: ThreadPoolForegroundWorker
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aea2778 ???
4   ???                           	0x000000012aea3150 ???
5   ???                           	0x000000012aea2cd4 ???
6   ???                           	0x000000012aef5e07 ???
7   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 18:: ThreadPoolForegroundWorker
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aea2778 ???
4   ???                           	0x000000012aea3150 ???
5   ???                           	0x000000012aea2cd4 ???
6   ???                           	0x000000012aef5e07 ???
7   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 19:: CompositorTileWorker1
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e3d4e __psynch_cvwait + 10
2   ???                           	0x000000012aef1e18 ???
3   ???                           	0x000000012c1a95f8 ???
4   ???                           	0x000000012aef5e07 ???
5   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
6   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 20:: Chrome_InProcGpuThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012ae2220f ???
4   ???                           	0x000000012ae8d62b ???
5   ???                           	0x000000012ae517cb ???
6   ???                           	0x000000012aeaca7d ???
7   ???                           	0x000000012aef5e07 ???
8   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 21:: Chrome_ChildIOThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202ea1ea kevent64 + 10
2   ???                           	0x000000012af04cc7 ???
3   ???                           	0x000000012ae8d62b ???
4   ???                           	0x000000012ae517cb ???
5   ???                           	0x000000012aeaca7d ???
6   ???                           	0x000000012aef5e07 ???
7   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 22:: VizCompositorThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 23:: NetworkConfigWatcher
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 24:: NetworkConfigWatcher
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 25:: ThreadPoolSingleThreadForegroundBlocking0
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012aea276a ???
5   ???                           	0x000000012aea3150 ???
6   ???                           	0x000000012aea2d34 ???
7   ???                           	0x000000012aef5e07 ???
8   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 26:: MemoryInfra
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 27:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 28:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 29:: NetworkConfigWatcher
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012ae221db ???
5   ???                           	0x000000012ae8d62b ???
6   ???                           	0x000000012ae517cb ???
7   ???                           	0x000000012aeaca7d ???
8   ???                           	0x000000012aef5e07 ???
9   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 30:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 31:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 32:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 33:
0   runtime                       	0x00007ffdffc3499c 0x7ffdffbda000 + 371100

Thread 34:: com.apple.NSEventThread
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   com.apple.CoreFoundation      	0x00007fff2040f9c5 __CFRunLoopServiceMachPort + 316
3   com.apple.CoreFoundation      	0x00007fff2040e07b __CFRunLoopRun + 1332
4   com.apple.CoreFoundation      	0x00007fff2040d480 CFRunLoopRunSpecific + 567
5   ???                           	0x00007fff22cb9baa ???
6   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
7   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 35:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0   ???                           	0x00007ffe94532ab8 ???
1   libsystem_kernel.dylib        	0x00007fff202e132a mach_msg_trap + 10
2   ???                           	0x000000012aefa492 ???
3   ???                           	0x000000012aefa2cf ???
4   ???                           	0x000000012aea276a ???
5   ???                           	0x000000012aea2e3d ???
6   ???                           	0x000000012aea2c74 ???
7   ???                           	0x000000012aef5e07 ???
8   libsystem_pthread.dylib       	0x00007fff20316954 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff203124a7 thread_start + 15

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x000000010915b000  rbx: 0x00007fff20330d1a  rcx: 0x00007fff20330d1a  rdx: 0x000000020105b298
  rdi: 0x00000002010633b0  rsi: 0x0000000000000ebb  rbp: 0x00007f98d015fd20  rsp: 0x00007f98d015fd20
   r8: 0x00007fff20330d33   r9: 0x8d1787243d26ac24  r10: 0x000000020108eeac  r11: 0x00000001093921b8
  r12: 0x8d1787243d26ac24  r13: 0x00000002010633b0  r14: 0x0000000000000ebb  r15: 0x000000020105b298
  rip: 0x0000000200fd2750  rfl: 0x0000000000000202


Binary Images:
                 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.2.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
       0x200fb7000 -        0x201052fff  dyld (851.27)  /usr/lib/dyld
    0x7ffdffbda000 -     0x7ffdffc4dfff +runtime (203.42)  /Library/Apple/*/runtime
    0x7fff2004e000 -     0x7fff2004ffff  libsystem_blocks.dylib (79)  /usr/lib/system/libsystem_blocks.dylib
    0x7fff20050000 -     0x7fff20085fff  libxpc.dylib (2038.100.48)  /usr/lib/system/libxpc.dylib
    0x7fff20086000 -     0x7fff2009dfff  libsystem_trace.dylib (1277.100.21)  /usr/lib/system/libsystem_trace.dylib
    0x7fff2009e000 -     0x7fff2013bfff  libcorecrypto.dylib (1000.100.38)  /usr/lib/system/libcorecrypto.dylib
    0x7fff2013c000 -     0x7fff20168fff  libsystem_malloc.dylib (317.100.9)  /usr/lib/system/libsystem_malloc.dylib
    0x7fff20169000 -     0x7fff201adfff  libdispatch.dylib (1271.100.5)  /usr/lib/system/libdispatch.dylib
    0x7fff201ae000 -     0x7fff201e7fff  libobjc.A.dylib (824)  /usr/lib/libobjc.A.dylib
    0x7fff201e8000 -     0x7fff201eafff  libsystem_featureflags.dylib (28.60.1)  /usr/lib/system/libsystem_featureflags.dylib
    0x7fff201eb000 -     0x7fff20273fff  libsystem_c.dylib (1439.100.3)  /usr/lib/system/libsystem_c.dylib
    0x7fff20274000 -     0x7fff202c9fff  libc++.1.dylib (905.6)  /usr/lib/libc++.1.dylib
    0x7fff202ca000 -     0x7fff202dffff  libc++abi.dylib (905.6)  /usr/lib/libc++abi.dylib
    0x7fff202e0000 -     0x7fff2030ffff  libsystem_kernel.dylib (7195.101.2)  /usr/lib/system/libsystem_kernel.dylib
    0x7fff20310000 -     0x7fff2031bfff  libsystem_pthread.dylib (454.100.8)  /usr/lib/system/libsystem_pthread.dylib
    0x7fff2031c000 -     0x7fff20357fff  libdyld.dylib (851.27)  /usr/lib/system/libdyld.dylib
    0x7fff20358000 -     0x7fff20361fff  libsystem_platform.dylib (254.80.2)  /usr/lib/system/libsystem_platform.dylib
    0x7fff20362000 -     0x7fff2038dfff  libsystem_info.dylib (542.40.3)  /usr/lib/system/libsystem_info.dylib
    0x7fff2038e000 -     0x7fff2082bfff  com.apple.CoreFoundation (6.9 - 1775.118.101)  /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
    0x7fff2241c000 -     0x7fff2267bfff  libicucore.A.dylib (66112)  /usr/lib/libicucore.A.dylib
    0x7fff2267c000 -     0x7fff22685fff  libsystem_darwin.dylib (1439.100.3)  /usr/lib/system/libsystem_darwin.dylib
    0x7fff22a9b000 -     0x7fff22aa6fff  libsystem_notify.dylib (279.40.4)  /usr/lib/system/libsystem_notify.dylib
    0x7fff24a28000 -     0x7fff24a36fff  libsystem_networkextension.dylib (1295.101.1)  /usr/lib/system/libsystem_networkextension.dylib
    0x7fff24a95000 -     0x7fff24aabfff  libsystem_asl.dylib (385)  /usr/lib/system/libsystem_asl.dylib
    0x7fff261a3000 -     0x7fff261aafff  libsystem_symptoms.dylib (1431.100.22)  /usr/lib/system/libsystem_symptoms.dylib
    0x7fff284aa000 -     0x7fff284bafff  libsystem_containermanager.dylib (318.100.4)  /usr/lib/system/libsystem_containermanager.dylib
    0x7fff291c1000 -     0x7fff291c4fff  libsystem_configuration.dylib (1109.101.1)  /usr/lib/system/libsystem_configuration.dylib
    0x7fff291c5000 -     0x7fff291c9fff  libsystem_sandbox.dylib (1441.101.1)  /usr/lib/system/libsystem_sandbox.dylib
    0x7fff29dc9000 -     0x7fff29dcbfff  libquarantine.dylib (119.40.2)  /usr/lib/system/libquarantine.dylib
    0x7fff2a367000 -     0x7fff2a373fff  libbz2.1.0.dylib (44)  /usr/lib/libbz2.1.0.dylib
    0x7fff2a374000 -     0x7fff2a378fff  libsystem_coreservices.dylib (127)  /usr/lib/system/libsystem_coreservices.dylib
    0x7fff2a575000 -     0x7fff2a587fff  libz.1.dylib (76)  /usr/lib/libz.1.dylib
    0x7fff2a588000 -     0x7fff2a5d3fff  libsystem_m.dylib (3186.100.3)  /usr/lib/system/libsystem_m.dylib
    0x7fff2a5d5000 -     0x7fff2a5dafff  libmacho.dylib (980)  /usr/lib/system/libmacho.dylib
    0x7fff2a5f7000 -     0x7fff2a602fff  libcommonCrypto.dylib (60178.100.1)  /usr/lib/system/libcommonCrypto.dylib
    0x7fff2a603000 -     0x7fff2a60dfff  libunwind.dylib (201)  /usr/lib/system/libunwind.dylib
    0x7fff2a60e000 -     0x7fff2a615fff  liboah.dylib (203.42)  /usr/lib/liboah.dylib
    0x7fff2a616000 -     0x7fff2a620fff  libcopyfile.dylib (173.40.2)  /usr/lib/system/libcopyfile.dylib
    0x7fff2a621000 -     0x7fff2a628fff  libcompiler_rt.dylib (102.2)  /usr/lib/system/libcompiler_rt.dylib
    0x7fff2a629000 -     0x7fff2a62bfff  libsystem_collections.dylib (1439.100.3)  /usr/lib/system/libsystem_collections.dylib
    0x7fff2a62c000 -     0x7fff2a62efff  libsystem_secinit.dylib (87.60.1)  /usr/lib/system/libsystem_secinit.dylib
    0x7fff2a62f000 -     0x7fff2a631fff  libremovefile.dylib (49.101.1)  /usr/lib/system/libremovefile.dylib
    0x7fff2a632000 -     0x7fff2a632fff  libkeymgr.dylib (31)  /usr/lib/system/libkeymgr.dylib
    0x7fff2a633000 -     0x7fff2a63afff  libsystem_dnssd.dylib (1310.100.10)  /usr/lib/system/libsystem_dnssd.dylib
    0x7fff2a63b000 -     0x7fff2a640fff  libcache.dylib (83)  /usr/lib/system/libcache.dylib
    0x7fff2a641000 -     0x7fff2a642fff  libSystem.B.dylib (1292.100.5)  /usr/lib/libSystem.B.dylib
    0x7fff2a643000 -     0x7fff2a646fff  libfakelink.dylib (3)  /usr/lib/libfakelink.dylib
    0x7fff2a647000 -     0x7fff2a647fff  com.apple.SoftLinking (1.0 - 1)  /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
    0x7fff2db8b000 -     0x7fff2db8bfff  liblaunch.dylib (2038.100.48)  /usr/lib/system/liblaunch.dylib
    0x7fff3000f000 -     0x7fff3000ffff  libsystem_product_info_filter.dylib (8.40.1)  /usr/lib/system/libsystem_product_info_filter.dylib

Translated Code Information:
  tmp0: 0x0000000100f177f0 tmp1: 0x0000000200fddf8d tmp2: 0x0000000100f1764c


External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=518.9M resident=0K(0%) swapped_out_or_unallocated=518.9M(100%)
Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               384K        3 
Activity Tracing                   256K        1 
CG backing stores                 1440K        6 
CG image                            64K       16 
CoreAnimation                       52K       11 
CoreGraphics                        12K        2 
CoreServices                       624K        2 
CoreUI image data                 1176K       18 
Foundation                          16K        1 
Kernel Alloc Once                  404K        4 
MALLOC                           354.2M       70 
MALLOC guard page                  192K        8 
MALLOC_MEDIUM (reserved)         904.0M        8         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
Mach message                        24K        6 
OpenGL GLSL                        384K        5 
Rosetta Arena                     2048K        1 
Rosetta Generic                   1572K      390 
Rosetta IndirectBranch            1024K        1 
Rosetta JIT                      128.0M        1 
Rosetta Return Stack               700K       70 
Rosetta Thread Context             700K       70 
STACK GUARD                         40K       10 
Stack                            145.1M       35 
Stack Guard                       56.1M       25 
VM_ALLOCATE                       97.8M      167 
VM_ALLOCATE (reserved)           160.0M        9         reserved VM address space (unallocated)
__DATA                             500K       50 
__DATA_CONST                      2983K       40 
__DATA_DIRTY                        95K       24 
__LINKEDIT                       506.5M        5 
__OBJC_RO                         70.1M        1 
__OBJC_RW                         2480K        2 
__TEXT                            12.5M       50 
__UNICODE                          588K        1 
dylib                             2088K       23 
dylib (reserved)                    88K        6         reserved VM address space (unallocated)
mapped file                        5.3G      855 
shared memory                     7780K       41 
unshared pmap                     10.5M        6 
===========                     =======  ======= 
TOTAL                              8.1G     2045 
TOTAL, minus reserved VM space     6.6G     2045 


System Profile:
Network Service: Ethernet, Ethernet, en0
Network Service: Wi-Fi, AirPort, en1
Boot Volume File System Type: apfs
Memory Module: LPDDR4
USB Device: USB 3.1 Bus
USB Device: USB 3.1 Bus
USB Device: USB 3.0 Bus
USB Device: Dell AC511 USB SoundBar
Thunderbolt Bus: Mac mini, Apple Inc.
Thunderbolt Bus: Mac mini, Apple Inc.
Model: Macmini9,1, BootROM 6723.101.4, proc 8:4:4 processors, 8 GB, SMC 
Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Apr  2 2021 00:48:12 version 18.52.1.2.7.8.116 FWID 01-9f7b4413
Bluetooth: Version 8.0.4d18, 3 services, 27 devices, 1 incoming serial ports


Log:
UCSF ChimeraX version: 1.2.2 (2021-05-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 71.5.9
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Macmini9,1
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 4 MB
      Memory: 8 GB

Software:

    System Software Overview:

      System Version: macOS 11.3.1 (20E241)
      Kernel Version: Darwin 20.4.0
      Time since boot: 3 days 9:12

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        DELL U2715H:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.3
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.2
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.2
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.4
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.7
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 4 years ago

Cc: pett added
Component: Unassigned → Platform
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash during dynamic linking under Rosetta emulation

comment:2 by pett, 4 years ago

Resolution: → can't reproduce
Status: assigned → closed

comment:3 by Tom Goddard, 4 years ago

Crash appears related to Intel CPU emulation on Apple M1 on a Mac Mini. User had 2 Gbytes of data open. Maybe crash encountered using some rare ChimeraX feature. I tested ChimeraX 1.2.2 on Mac Mini Apple M1, started and showed map and model correctly. Not enough info to debug.

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