![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Feb 18, 2021:
- 9:17 PM Ticket #4271 (Toolshed using internal UI API) created by
- […]
- 5:54 PM 2021-2-18 edited by
- (diff)
- 4:23 PM Ticket #4269 (AddH: can't form new hydrogen name) closed by
- fixed
- 3:58 PM Ticket #4270 (depict bond orders) created by
- Compute bond orders and then depict them
- 2:46 PM Dev2021-3-4 created by
- 2:44 PM DeveloperMeetings edited by
- (diff)
- 2:41 PM Dev2021-2-18 edited by
- (diff)
- 2:30 PM Dev2021-2-18 edited by
- (diff)
- 2:28 PM Dev2021-2-18 edited by
- (diff)
- 2:27 PM Dev2021-2-18 edited by
- (diff)
- 12:49 PM 2021-2-18 edited by
- (diff)
- 12:48 PM 2021-2-18 edited by
- (diff)
- 12:06 PM 2021-2-18 edited by
- (diff)
- 11:32 AM 2021-2-18 edited by
- (diff)
- 11:07 AM 2021-2-18 edited by
- (diff)
- 9:58 AM Ticket #4269 (AddH: can't form new hydrogen name) created by
- […]
- 9:46 AM Ticket #4268 (AddH: can't form new hydrogen name) closed by
- duplicate: Hi John, Thanks for reporting this problem. I believe this issue is …
- 9:07 AM Ticket #4266 (Error in toolshed error message) closed by
- duplicate: Hi Amr, You can safely ignore that error. ChimeraX was trying to …
- 9:04 AM Ticket #4265 (Error in toolshed error message) closed by
- duplicate
- 8:55 AM Ticket #4263 (SEQCROW: cannot find substituent directory) closed by
- duplicate
- 7:23 AM Ticket #4268 (AddH: can't form new hydrogen name) created by
- […]
- 7:12 AM Ticket #4267 (Problem docking ISOLDE widget) created by
- […]
- 5:17 AM Ticket #4266 (Error in toolshed error message) created by
- […]
- 5:12 AM Ticket #4265 (Error in toolshed error message) created by
- […]
Feb 17, 2021:
- 10:49 PM Ticket #4264 (Modeller: cannot handle direction association onto target if deletions ...) created by
- […]
- 10:49 PM Ticket #4263 (SEQCROW: cannot find substituent directory) created by
- […]
- 8:16 PM Dev2021-2-18 edited by
- (diff)
- 8:15 PM Dev2021-2-18 edited by
- (diff)
- 7:49 PM Ticket #4262 (Does Toolshed avoid installing incompatible dependencies?) created by
- I am wondering if the Toolshed will update bundles that result in …
- 7:30 PM Ticket #4261 (need to update search index after bundle is submitted) created by
- This could either be done via a daily cron job, or it could be done …
- 6:07 PM Ticket #3430 (Support >4 character atom names) closed by
- fixed: Okay, buckle your seatbelts, I've changed atom.name to string. That …
- 4:03 PM Dev2021-2-18 edited by
- (diff)
- 9:58 AM Ticket #4260 (Graphics crash, macOS 10.15.7, Intel Iris Plus 640) closed by
- can't reproduce: Possible duplicate of #4257, #4259, #4259.. Different computer but …
- 9:56 AM Ticket #4259 (Graphics crash, macOS 11.1, Intel Iris Plus, report 4) closed by
- duplicate: Duplicate of #4257. Same user. Apparently they have a reproducible …
- 9:55 AM Ticket #4258 (Graphics crash, macOS 11.1, Intel Iris Plus, report 3) closed by
- duplicate: Duplicate of #4257. Same user. Apparently they have a reproducible …
- 9:54 AM Ticket #4257 (Graphics crash, macOS 11.1, Intel Iris Plus, report 2) closed by
- can't reproduce: Apple graphics driver bug.
- 9:45 AM Ticket #4256 (Dual display crash) closed by
- can't reproduce
- 9:41 AM Ticket #4255 (Blast results problem) closed by
- duplicate: Hello, Thanks for reporting this problem. It is fixed in the daily …
- 9:38 AM Ticket #4254 (SEQCROW: cannot find substituent directory) closed by
- duplicate
- 9:36 AM Ticket #4253 (Permission denied saving image) closed by
- can't reproduce: Really? Can't save to his own Documents folder?
- 8:55 AM Ticket #4260 (Graphics crash, macOS 10.15.7, Intel Iris Plus 640) created by
- […]
- 8:30 AM Ticket #4259 (Graphics crash, macOS 11.1, Intel Iris Plus, report 4) created by
- […]
- 7:06 AM Ticket #4258 (Graphics crash, macOS 11.1, Intel Iris Plus, report 3) created by
- […]
- 5:24 AM Ticket #4257 (Graphics crash, macOS 11.1, Intel Iris Plus, report 2) created by
- […]
- 1:59 AM Ticket #4256 (Dual display crash) created by
- […]
Feb 16, 2021:
- 10:40 PM Ticket #4255 (Blast results problem) created by
- […]
- 9:29 PM Ticket #4254 (SEQCROW: cannot find substituent directory) created by
- […]
- 8:57 PM Ticket #4253 (Permission denied saving image) created by
- […]
- 12:08 PM Ticket #4246 (Add Charge: dictionary changed size during iteration) closed by
- fixed
- 11:48 AM Ticket #4243 (mlp command does not work on volume surface) closed by
- fixed: Fixed. Made mlp work on surfaces that don't have atoms associated …
- 11:33 AM Ticket #4247 (coulombic protein chargeMethod gas: parse() missing 1 required ...) closed by
- fixed: Fixed. Also removed the preemptive odd-number-of-electrons check if …
- 10:56 AM Ticket #4249 (Graphics hardware encountered an error and was reset) closed by
- can't reproduce: Apple Intel graphics driver crash.
- 10:54 AM Ticket #4251 (Add Charge trying to use local libquadmath) closed by
- fixed: I *believe* this is fixed now -- but it needs testing on a machine …
- 10:46 AM Ticket #4250 (Scipion/Volume Viewer histogram: cannot convert float NaN to integer) closed by
- nonchimerax: User opened MRC map file with NaN intensity values.
- 9:07 AM Ticket #4252 (Toolshed using internal UI API) closed by
- duplicate: Hi, Thanks for reporting this problem. You can safely ignore it -- …
- 8:56 AM Ticket #4252 (Toolshed using internal UI API) created by
- […]
- 8:49 AM Ticket #4251 (Add Charge trying to use local libquadmath) created by
- I can use Chimera addcharge on 1xf6, which has inline MEN …
- 3:31 AM Ticket #4250 (Scipion/Volume Viewer histogram: cannot convert float NaN to integer) created by
- […]
Feb 15, 2021:
- 9:03 AM Ticket #4248 (Error in toolshed error message) closed by
- duplicate
- 8:58 AM Ticket #4245 (Toolshed using internal UI API) closed by
- duplicate: Hi Uttam, You can safely ignore the error -- the packages were …
Feb 14, 2021:
- 11:28 PM Ticket #4249 (Graphics hardware encountered an error and was reset) created by
- […]
- 11:21 PM Ticket #4248 (Error in toolshed error message) created by
- […]
- 9:54 AM Ticket #4247 (coulombic protein chargeMethod gas: parse() missing 1 required ...) created by
- […]
- 7:48 AM Ticket #4246 (Add Charge: dictionary changed size during iteration) created by
- […]
- 12:01 AM Ticket #4245 (Toolshed using internal UI API) created by
- […]
Feb 13, 2021:
- 3:52 PM Ticket #4244 (SEQCROW: cannot find substituent directory) created by
- […]
- 12:49 PM Ticket #4243 (mlp command does not work on volume surface) created by
- […]
Feb 12, 2021:
- 11:58 AM Ticket #3757 (Session tries to restore non-StateManager as StateManager) closed by
- can't reproduce: Thank you very much for responding. I suspect this bug was fixed by …
- 9:09 AM Ticket #4242 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Carla, Thanks for reporting this error. It is fixed in the 1.1 …
- 7:39 AM Ticket #4242 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 5:00 AM Ticket #4241 (Feature suggestion: combine focused cryo-EM maps) created by
- I tried out the Phenix tool for this …
Feb 11, 2021:
- 5:44 PM Ticket #4240 (Ribbon selection highlighting not responding to atom deletion) closed by
- fixed: Fixed. Atom deletion C++ code was not setting the graphics selection …
- 5:27 PM Ticket #4237 (Ribbons: spline normal computation for straight line) closed by
- not a bug: No problem.
- 3:37 PM ChangeLog edited by
- (diff)
- 3:35 PM Dev2021-2-18 edited by
- (diff)
- 3:35 PM Dev2021-2-18 created by
- 3:33 PM DeveloperMeetings edited by
- (diff)
- 3:32 PM 2021-2-18 created by
- 3:28 PM DeveloperMeetings edited by
- (diff)
- 3:27 PM DeveloperMeetings edited by
- (diff)
- 3:26 PM DeveloperMeetings edited by
- (diff)
- 3:26 PM DeveloperMeetings2020 created by
- 3:25 PM DeveloperMeetings edited by
- (diff)
- 3:24 PM DeveloperMeetings edited by
- (diff)
- 3:22 PM 2021-2-11 edited by
- (diff)
- 3:21 PM 2021-2-11 edited by
- (diff)
- 3:20 PM 2021-2-11 edited by
- (diff)
- 3:20 PM 2021-2-11 edited by
- (diff)
- 3:17 PM 2021-2-11 edited by
- (diff)
- 3:09 PM Ticket #4236 (Volume Eraser: wrapped C/C++ object of type QLineEdit has been deleted) closed by
- duplicate: Fixed long ago. #3115. User is on old ChimeraX 0.94.
- 2:05 PM NeteSOW edited by
- (diff)
- 1:59 PM NeteSOW edited by
- (diff)
- 1:53 PM NeteSOW edited by
- (diff)
- 1:48 PM NeteSOW edited by
- (diff)
- 1:20 PM NeteSOW edited by
- (diff)
- 12:57 PM Ticket #4240 (Ribbon selection highlighting not responding to atom deletion) created by
- […]
- 12:16 PM NeteSOW edited by
- (diff)
- 12:15 PM NeteSOW edited by
- (diff)
- 10:20 AM Ticket #3999 (Toolshed offers to install ISOLDE for wrong Python version then fails) closed by
- fixed: Caveat, not fixed for ChimeraX 1.1. But is fixed for ChimeraX 1.2 and …
- 10:11 AM Ticket #3827 (Slow ChimeraX startup due to Toolshed) closed by
- fixed: Fixed by solution to #3901.
- 9:22 AM Ticket #4239 (Crash with trashed stack) closed by
- can't reproduce
- 9:14 AM Ticket #4234 (Crash (dropping color swatch?)) closed by
- nonchimerax
- 7:45 AM Ticket #4239 (Crash with trashed stack) created by
- […]
- 4:14 AM Ticket #4238 (Selection outline invisible on segmentations) created by
- […]
Feb 10, 2021:
- 10:40 PM Ticket #4170 (Remove unnecessary PyPi packages during build) closed by
- fixed: Reduced build_requirements.txt to Cython, grako, Sphinx. Tested on …
- 5:51 PM Ticket #4237 (Ribbons: spline normal computation for straight line) created by
- […]
- 12:29 PM Ticket #4236 (Volume Eraser: wrapped C/C++ object of type QLineEdit has been deleted) created by
- […]
- 10:49 AM Ticket #4235 (RealSense camera interface pyrealsense2 not available for Python 3.8) created by
- The pyrealsense2 PyPi module used by our RealSense camera tool for …
- 9:28 AM Ticket #4233 (Dual display crash) closed by
- duplicate: Possibly fixed by Qt 5.15
- 8:16 AM ChangeLog edited by
- (diff)
- 6:24 AM Ticket #4234 (Crash (dropping color swatch?)) created by
- […]
- 2:38 AM Ticket #4233 (Dual display crash) created by
- […]
Feb 9, 2021:
- 3:58 PM 2021-2-11 edited by
- (diff)
- 3:50 PM Ticket #4232 (RFE: make ViewDockX understand SwissDock output) created by
- On Feb 9, 2021, at 3:56 AM, Michael Weber wrote: ... I use SwissDock …
- 1:11 PM Ticket #4231 (Colorbrewer palettes not using correct default number of colors) created by
- Currently the documentation for using Colorbrewer palettes in ChimeraX …
- 10:38 AM 2021-2-11 created by
- 10:37 AM 2021-2-4 edited by
- (diff)
- 10:34 AM DeveloperMeetings edited by
- (diff)
- 10:03 AM Ticket #4230 (abort() called during swap buffers) closed by
- can't reproduce: ChimeraX 0.9
- 9:36 AM Ticket #4228 (IHM: cached zip file corrupted) closed by
- duplicate: Duplicate of #4229
- 4:01 AM Ticket #4230 (abort() called during swap buffers) created by
- […]
Feb 8, 2021:
- 11:04 PM Ticket #4229 (IHM: cached zip file corrupted) created by
- […] PDBDEV_00000010.cif
- 10:11 PM Ticket #4228 (IHM: cached zip file corrupted) created by
- […]
- 6:01 PM Ticket #4226 (Bug checking for numeric labels in color key) closed by
- fixed
- 5:30 PM Ticket #4227 (Better session-restore error message) created by
- […]
- 4:47 PM Ticket #4226 (Bug checking for numeric labels in color key) created by
- […]
- 4:00 PM Ticket #4225 (Tomogram fetch hung) created by
- […]
- 1:43 PM Ticket #4224 (Toolshed using internal UI API) closed by
- duplicate: Hi Francisco, You can safely ignore this error; the bundles you …
- 12:02 PM Ticket #4224 (Toolshed using internal UI API) created by
- […]
- 10:21 AM Ticket #4218 (OpenGL startup errors on Windows 7) closed by
- nonchimerax: ChimeraX does not support Windows 7 as it says on the download page. …
- 9:20 AM Ticket #4223 (ChimeraX bug report submission) closed by
- duplicate: Duplicate of #4218
- 9:19 AM Ticket #4222 (OpenGL startup errors on Windows 7) closed by
- duplicate: Duplicate of #4218
- 9:18 AM Ticket #4221 (Error in error message reinstalling bundle) closed by
- duplicate
- 9:17 AM Ticket #4220 (OpenGL startup errors on Windows 7) closed by
- duplicate: Duplicate of #4218
- 9:16 AM Ticket #4219 (OpenGL startup errors on Windows 7) closed by
- duplicate: Duplicate of #4218
- 9:05 AM Ticket #4216 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() closed by
- can't reproduce
- 2:43 AM Ticket #4223 (ChimeraX bug report submission) created by
- […]
- 2:43 AM Ticket #4222 (OpenGL startup errors on Windows 7) created by
- […]
- 2:09 AM Ticket #4221 (Error in error message reinstalling bundle) created by
- […]
Feb 6, 2021:
- 8:30 PM Ticket #4220 (OpenGL startup errors on Windows 7) created by
- […]
- 7:11 PM Ticket #4219 (OpenGL startup errors on Windows 7) created by
- […]
- 6:44 PM Ticket #4218 (OpenGL startup errors on Windows 7) created by
- […]
- 2:05 AM Ticket #4217 (Mol2 chirality) created by
- […]
Feb 5, 2021:
- 10:53 AM Ticket #4216 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() created by
- […]
- 9:31 AM Ticket #4215 (Graphics crash, macOS 11.1, Intel Iris Plus, report 1) closed by
- can't reproduce
- 9:27 AM Ticket #4214 (Crash in ring.aromatic) closed by
- can't reproduce: I believe this is a problem in AddH that was fixed on 10/19
- 9:26 AM Ticket #4213 (Crash in ring.aromatic) closed by
- can't reproduce: I believe this is a problem in AddH that was fixed on 10/19
- 5:02 AM Ticket #4215 (Graphics crash, macOS 11.1, Intel Iris Plus, report 1) created by
- […]
- 12:40 AM Ticket #4214 (Crash in ring.aromatic) created by
- […]
- 12:38 AM Ticket #4213 (Crash in ring.aromatic) created by
- […]
Feb 4, 2021:
- 5:46 PM ChangeLog edited by
- (diff)
- 5:39 PM ChangeLog edited by
- (diff)
- 4:45 PM Ticket #4212 (Timeout writing session file) closed by
- can't reproduce: The error message is from the Qt window toolkit and means it was …
- 2:29 PM Ticket #4210 (Crash reporting cursor position) closed by
- can't reproduce: Python traceback makes it look like the crash was in QCursor.pos(). …
- 11:53 AM Ticket #4212 (Timeout writing session file) created by
- […]
- 11:05 AM 2021-2-4 edited by
- (diff)
- 11:04 AM 2021-2-4 edited by
- (diff)
- 9:39 AM Ticket #4211 (setattr: 'OrderedSet' object is not subscriptable) closed by
- duplicate: Hi Mungo, This is fixed in the daily build, and will be fixed in the …
- 9:08 AM Ticket #4211 (setattr: 'OrderedSet' object is not subscriptable) created by
- […]
Feb 3, 2021:
- 3:23 PM Ticket #4210 (Crash reporting cursor position) created by
- […]
- 2:45 PM Ticket #4087 (Wide tool can nuke graphics window) closed by
- fixed: Despite the fact that I can tell from measuring various widths that …
- 1:01 PM Ticket #4087 (Wide tool can nuke graphics window) reopened by
- If forced to the side, it does nuke the window.
- 12:57 PM Ticket #4087 (Wide tool can nuke graphics window) closed by
- fixed: Seems to be moot now. The alignment opens as floating. When dropped …
- 11:26 AM 2021-2-4 edited by
- (diff)
- 10:06 AM Ticket #4209 (Problem drawing selection outline: glBlitFramebuffer: invalid operation) closed by
- nonchimerax: The ChimeraX error means your graphics driver is not able to draw …
- 8:16 AM Ticket #4209 (Problem drawing selection outline: glBlitFramebuffer: invalid operation) created by
- […]
Feb 2, 2021:
- 5:17 PM Ticket #4206 (Can't select atom with empty chain id) closed by
- fixed: Okay, made it so that if the chain ID is a blank, then the atom spec …
- 1:48 PM Ticket #4208 (Color arg no longer handled correctly) created by
- […]
- 11:50 AM Ticket #4207 (Make gaussian cube file reader create atoms) created by
- I made example Python code to create the atoms …
- 10:36 AM Ticket #4206 (Can't select atom with empty chain id) created by
- […] test.mmcif
- 10:15 AM Ticket #4205 (Odd stack trace that eventually crashes in ring_aromatic) closed by
- duplicate: Duplicate of #4201, with the same anonymous user ID. ChimeraX being …
- 10:03 AM Ticket #4203 (Crash in PyOpenGL-accelerate(?)) closed by
- nonchimerax: ChimeraX crashed in Apple's OpenGL graphics driver. Unfortunately …
- 9:17 AM Ticket #4201 (Odd stack trace that eventually crashes in ring_aromatic) closed by
- can't reproduce
- 8:41 AM Ticket #4205 (Odd stack trace that eventually crashes in ring_aromatic) created by
- […]
- 7:28 AM Ticket #4204 (Bad sequence-header save) created by
- […]
- 7:14 AM Ticket #4203 (Crash in PyOpenGL-accelerate(?)) created by
- […]
- 12:37 AM Ticket #4202 (X3D export writes hidden surfaces) created by
- […]
- 12:01 AM Ticket #4107 (Toolshed offers to install bundle that requires core<=1.1 in ChimeraX ...) closed by
- fixed: I'm going to consider this fixed.
Feb 1, 2021:
- 11:23 PM Ticket #4201 (Odd stack trace that eventually crashes in ring_aromatic) created by
- […]
- 8:45 PM Ticket #4120 (Support PySide2 and PyQt5 with a shim qt module) closed by
- fixed: Made very simple Qt shim module (prereqs/qtshim) starting with qtpy …
- 8:39 PM Ticket #4085 (Webcam command broken by pyside2) closed by
- fixed: Fixed. Reverted from PySide2 to PyQt5.
- 8:39 PM Ticket #4200 (Recent Windows 10 incompatibility) created by
- […]
- 5:19 PM 2021-2-4 edited by
- (diff)
- 4:15 PM Ticket #4190 (Overflow encountered in geometry.camera.double_scalars()) closed by
- can't reproduce: First there are two warnings double floating point overflow in Camera …
- 3:57 PM 2021-2-4 edited by
- (diff)
- 3:51 PM 2021-1-28 edited by
- (diff)
- 3:46 PM 2021-2-4 created by
- 3:43 PM FAI edited by
- (diff)
- 3:42 PM DeveloperMeetings edited by
- (diff)
- 11:12 AM Ticket #4192 (Cannot import chimerax.surface: libGLU.so.1: No such file or directory) closed by
- can't reproduce: libGLU.so.1 is in the mesa-libGLU package. That package is listed as …
- 9:10 AM Ticket #4198 (Crash in QtWebEngineCore) closed by
- can't reproduce
- 8:55 AM Ticket #4196 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 8:53 AM Ticket #4195 (Toolshed using internal UI API) closed by
- duplicate
- 8:50 AM Ticket #4193 (Cannot import chimerax.surface: libGLU.so.1: No such file or directory) closed by
- duplicate: Duplicate of #4192
- 2:06 AM Ticket #4199 (Modified nucleotides not depicted as ladder) created by
- […]
Jan 31, 2021:
- 7:40 PM Ticket #4198 (Crash in QtWebEngineCore) created by
- […]
- 1:26 PM Ticket #4197 (Save RMF in session: _RMFProvenance class not handled by get_class()) created by
- […]
Jan 30, 2021:
- 1:17 PM Ticket #4196 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 12:49 PM Ticket #4195 (Toolshed using internal UI API) created by
- […]
- 3:53 AM Ticket #4194 (Scaling when exporting) created by
- […]
Jan 29, 2021:
- 6:49 PM Ticket #4106 (Toolshed install of StrudelScore fails, apparently wheel file has ...) closed by
- fixed: Did two things to fix this: (1) you can no longer upload a pending …
- 6:15 PM Ticket #3624 (Check ABI for Toolshed ability to install) closed by
- fixed
- 6:12 PM Ticket #3552 ("Install" button needs feedback; downloads slow) closed by
- fixed: The button on the toolshed's bundle page now says "Install", …
- 4:49 PM Ticket #4185 (Problem with multiprocessing scripts) closed by
- not a bug: That is by design. ChimeraX, the application, needs to protect …
- 4:32 PM Ticket #4193 (Cannot import chimerax.surface: libGLU.so.1: No such file or directory) created by
- […]
- 4:32 PM Ticket #4192 (Cannot import chimerax.surface: libGLU.so.1: No such file or directory) created by
- […]
- 4:20 PM Ticket #3541 (Toolshed needs "Successfully installed" message in browser) closed by
- fixed: When a bundle is installed from the toolshed from the ChimeraX …
- 4:07 PM Ticket #4191 (Coulombic failure due to unexpected hydrogen name) closed by
- fixed: Hi Cesar, The version of coulombic you have expects all the atoms in …
- 2:39 PM 2021-1-21 edited by
- (diff)
- 2:37 PM 2021-1-21 edited by
- (diff)
- 1:05 PM Ticket #4191 (Coulombic failure due to unexpected hydrogen name) created by
- […]
- 10:25 AM Ticket #4190 (Overflow encountered in geometry.camera.double_scalars()) created by
- […]
- 9:52 AM Ticket #4187 (Graphics hardware encountered an error and was reset) closed by
- nonchimerax: Poor Apple OpenGL graphics driver. 4 Gbyte memory in use, so fairly …
- 9:18 AM Ticket #4189 (Blast results problem) closed by
- duplicate: Hi Marta, Thanks for reporting this problem. It is fixed in the …
- 9:08 AM Ticket #4188 (Toolshed using internal UI API) closed by
- duplicate: Hi Shantanu, Thanks for reporting this error. I think you can safely …
- 1:46 AM Ticket #4189 (Blast results problem) created by
- […]
- 12:19 AM Ticket #4188 (Toolshed using internal UI API) created by
- […]
- 12:18 AM Ticket #4187 (Graphics hardware encountered an error and was reset) created by
- […]
- 12:02 AM Ticket #4184 (Make builds by outside developers use PyPi PyQt5 or PySide2) closed by
- fixed: Done. There was already a PYQT_LICENSE=commercial variable in the …
Jan 28, 2021:
- 5:43 PM Ticket #4135 (Modeller job fault / server error) closed by
- fixed: After a lot of detective work it turns out that Opal web services …
- 4:59 PM Ticket #4182 (Model panel View button does not work on volumes) closed by
- fixed: "View" now uses just '#' instead of '#!'.
- 4:27 PM Ticket #4186 (Error in error message reinstalling bundle) closed by
- duplicate: Hi Jose, Thanks for reporting this problem. You can safely ignore it …
- 3:37 PM NeteSOW edited by
- (diff)
- 2:22 PM NeteSOW edited by
- (diff)
- 1:50 PM NeteSOW edited by
- (diff)
- 1:48 PM NeteSOW edited by
- (diff)
- 1:46 PM NeteSOW edited by
- (diff)
- 1:41 PM NeteSOW edited by
- (diff)
- 1:39 PM NeteSOW edited by
- (diff)
- 1:18 PM NeteSOW edited by
- (diff)
- 1:16 PM NeteSOW edited by
- (diff)
- 1:05 PM NeteSOW edited by
- (diff)
- 11:36 AM Ticket #4186 (Error in error message reinstalling bundle) created by
- […]
- 9:44 AM 2021-1-28 edited by
- (diff)
- 9:09 AM Ticket #4185 (Problem with multiprocessing scripts) created by
- […]
Jan 27, 2021:
- 6:47 PM Ticket #4184 (Make builds by outside developers use PyPi PyQt5 or PySide2) created by
- The ChimeraX builds are back to using commercial PyQt5 wheels on plato …
- 5:06 PM Ticket #4183 (Long 30 second startup time) created by
- […]
- 4:20 PM Ticket #4182 (Model panel View button does not work on volumes) created by
- […]
- 2:09 PM Ticket #4181 (better initial display when build start nucleic makes new model) closed by
- fixed: Wasn't as hard as anticipated
- 2:08 PM Ticket #4180 (better initial display when build start adds to existing model) closed by
- fixed
- 1:33 PM Ticket #4179 (Dual display crash) closed by
- duplicate
- 1:28 PM ChangeLog edited by
- (diff)
- 12:45 PM Ticket #4181 (better initial display when build start nucleic makes new model) created by
- If possible, I'd prefer it show sticks with heteroatom or element …
- 12:41 PM Ticket #4180 (better initial display when build start adds to existing model) created by
- Currently you get all white spheres. Would be better as sticks …
- 12:32 PM Ticket #4179 (Dual display crash) created by
- […]
- 11:21 AM Ticket #4178 (OpenMM: Error launching CUDA compiler: Value 'sm_75' is not defined ...) closed by
- can't reproduce: Not much idea what's going on here. A quick Google of the error …
- 10:35 AM Ticket #4178 (OpenMM: Error launching CUDA compiler: Value 'sm_75' is not defined ...) created by
- […]
- 10:21 AM Ticket #4177 (Script for setting ligand chain IDs) created by
- […] ligand_utils.py
- 7:24 AM Ticket #4176 (mmCIF save/restore produces duplicate residues) created by
- […] duplicated_sugars.jpg
- 1:13 AM Ticket #4175 (H-bonds not recreated) created by
- […]
Jan 26, 2021:
- 11:28 PM Ticket #4174 (make install in bundles should reinstall even if version did not change) closed by
- fixed: The bug due to code in toolshed.find_bundle that changes …
- 9:26 PM Ticket #4174 (make install in bundles should reinstall even if version did not change) created by
- […]
- 6:09 PM Ticket #4173 (Interrupt in _redraw_timer_callback) closed by
- can't reproduce: Presumably something hung or seemed to hang.
- 5:54 PM ChangeLog edited by
- (diff)
- 4:16 PM Ticket #4173 (Interrupt in _redraw_timer_callback) created by
- […]
- 1:50 PM Ticket #4172 (Crash activating timers) closed by
- can't reproduce: Hi James, This is likely a problem with the Qt windowing toolkit that …
- 11:54 AM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) closed by
- can't reproduce: The example I used was inserting residues 61-66 of chain A of 2gbp …
- 11:03 AM Ticket #4172 (Crash activating timers) created by
- […]
- 10:23 AM Ticket #4171 (delete alt locs) created by
- Need C++/Python support for deleting alt locs
- 10:03 AM 2021-1-28 created by
- 10:00 AM DeveloperMeetings edited by
- (diff)
Jan 25, 2021:
- 5:00 PM ChangeLog edited by
- (diff)
- 3:46 PM Ticket #4170 (Remove unnecessary PyPi packages during build) created by
- The prereqs/pips make install target installs about 40 packages …
- 10:48 AM Ticket #4169 (toolshed install command does not handle "*" globbing in file name.) created by
- […]
- 10:42 AM Ticket #4167 (Drawing selection outline: glBlitFramebuffer: invalid operation) closed by
- nonchimerax: The error is very likely a graphics driver bug. It appears it cannot …
- 10:23 AM Ticket #4165 (Dual display crash) closed by
- can't reproduce
- 10:21 AM Ticket #4164 (SHEET information is keep nor maintained) closed by
- duplicate: Duplicate of #1021
- 6:49 AM Ticket #4168 (Show alternate locations simultaneously) created by
- […]
Jan 24, 2021:
- 1:14 AM Ticket #4167 (Drawing selection outline: glBlitFramebuffer: invalid operation) created by
- […]
Jan 23, 2021:
- 5:41 PM Ticket #4166 (ISOLDE/ParmEd: UnboundLocalError: local variable 'compiler_package' ...) created by
- […]
- 12:33 PM Ticket #4165 (Dual display crash) created by
- […]
Jan 22, 2021:
- 11:59 PM Ticket #4125 (Command argument quoting not working for single quotes) closed by
- not a bug: The quoting behavior is by design. You are being bitten by the fact …
- 3:56 PM Ticket #4152 (alt loc starting values) closed by
- fixed: I assigned the bfactor, coordinate, and serial_number to their …
- 3:23 PM Ticket #4164 (SHEET information is keep nor maintained) created by
- When outputting mmCIF files, the sheet information is not given …
- 2:55 PM Ticket #4161 (CIF vs. PDB deposition) closed by
- nonchimerax: tl;dr -- mostly a PDB validator bug. There are lots of issues here. …
- 2:30 PM Ticket #4154 (Attempt to show dead dialog) closed by
- fixed: Make the close button just hide the dialog, not destroy it.
- 2:18 PM Ticket #4163 (Map coordinates rotation axis has wrong sign) closed by
- fixed: Fixed. Was using rotation axis and angle from the transposed (hence …
- 2:16 PM Ticket #4163 (Map coordinates rotation axis has wrong sign) created by
- […]
- 2:12 PM Ticket #4160 (Occasional slow startup) closed by
- can't reproduce: I will report again with splash screen info when it happens next.
- 2:11 PM Ticket #4156 (Deleting atom twice) closed by
- fixed: Coulombic needed to account for the fact that add_charge can delete 5' …
- 1:40 PM Ticket #4162 (Excessive mmCIF warning output) created by
- If you take the PDB from #4161 and save it as an mmCIF and then open …
- 11:45 AM Ticket #4161 (CIF vs. PDB deposition) created by
- […] 2-C_LOBE-1_fixed2.pdb
- 11:43 AM Ticket #4158 (Scipion: write MRC: only size-1 arrays can be converted to Python scalars) closed by
- fixed: Fixed. Writing an MRC file where the coordinates were rotated with …
- 11:43 AM Ticket #4157 (Bad electron count) closed by
- fixed: Some of the atoms added in from adjacent residues weren't being tracked.
- 11:31 AM Ticket #4160 (Occasional slow startup) created by
- […]
- 11:23 AM Ticket #3152 (Toolbar icon rollover → crash) closed by
- fixed: I worked around this Qt bug about a year ago. The Toolbar icon …
- 11:21 AM Ticket #3023 (Crash showing menu) closed by
- duplicate: This is probably fixed in Qt 5.15.2 which the ChimeraX daily builds …
- 11:20 AM Ticket #3395 (Crash showing tooltip text) closed by
- duplicate: This is probably fixed in Qt 5.15.2 which the ChimeraX daily builds …
- 11:17 AM Ticket #4153 (Crash with dual displays) closed by
- duplicate: The crash traceback looks like it was displaying a menu. There is a …
- 9:26 AM Ticket #4155 (Crash setting up menubar when going full screen) closed by
- can't reproduce
- 8:04 AM Ticket #4159 (Crash in garbage collection during new-object allocation) created by
- […]
- 2:44 AM Ticket #4158 (Scipion: write MRC: only size-1 arrays can be converted to Python scalars) created by
- […]
Jan 21, 2021:
- 2:03 PM 2021-1-21 edited by
- (diff)
- 2:02 PM 2021-1-21 edited by
- (diff)
- 2:00 PM 2021-1-21 edited by
- (diff)
- 1:57 PM 2021-1-21 edited by
- (diff)
- 1:56 PM Ticket #4157 (Bad electron count) created by
- […]
- 1:36 PM Ticket #4156 (Deleting atom twice) created by
- […]
- 1:23 PM Ticket #4155 (Crash setting up menubar when going full screen) created by
- […]
- 1:22 PM Ticket #4154 (Attempt to show dead dialog) created by
- […]
- 1:08 PM Ticket #4150 (Coulombic failure) closed by
- fixed: Coulombic knew that Amber calls NH2 NHE. AddCharge didn't. Now it does.
- 12:44 PM Ticket #4153 (Crash with dual displays) created by
- […]
- 11:27 AM 2021-1-21 edited by
- (diff)
- 11:19 AM 2021-1-21 edited by
- (diff)
- 11:14 AM 2021-1-21 edited by
- (diff)
- 11:13 AM 2021-1-21 edited by
- (diff)
- 11:11 AM 2021-1-21 edited by
- (diff)
- 10:50 AM 2021-1-21 edited by
- (diff)
- 10:38 AM 2021-1-21 created by
- 10:36 AM DeveloperMeetings edited by
- (diff)
- 10:27 AM Ticket #4152 (alt loc starting values) created by
- […]
- 9:57 AM Ticket #4151 (struct_edit.add_bond trying to '+' Residues collections) closed by
- fixed: You are right that it is fixed in the daily build, but I don't …
- 8:42 AM Ticket #4151 (struct_edit.add_bond trying to '+' Residues collections) created by
- […]
Jan 20, 2021:
- 10:26 PM Ticket #2853 (Windows build should not require pre-installed Python) closed by
- fixed: Switched to Python 3.8.7. Used the "make_win_distribution" target in …
- 5:45 PM ChangeLog edited by
- (diff)
- 5:45 PM ChangeLog edited by
- (diff)
- 2:48 PM Ticket #4150 (Coulombic failure) created by
- […]
- 2:37 PM Ticket #4149 (Binary installation of AmberTools) created by
- Since installing AmberTools20 requires not only the installation of …
- 11:55 AM Ticket #4146 (DataDir not included in bundle) closed by
- fixed: Ignore the top-level DataDir thing, I was confused. That tag is only …
- 9:07 AM Ticket #4148 (Toolshed using internal UI API) closed by
- duplicate: Hi Yashar, Thanks for reporting this problem. It is harmless, so you …
- 9:03 AM Ticket #4147 (Toolshed using internal UI API) closed by
- duplicate
- 8:18 AM Ticket #4148 (Toolshed using internal UI API) created by
- […]
Jan 19, 2021:
- 6:12 PM Ticket #4144 (Bad info from RCSB when querying blast results) closed by
- fixed: An infrequently used part of the blast-results parsing code was …
- 4:37 PM Ticket #4139 (Crash calculating H-bonds) closed by
- fixed: Recent changes to change notifications were buggy for pseudobonds and …
- 2:24 PM Ticket #4147 (Toolshed using internal UI API) created by
- […]
- 1:55 PM Ticket #3216 (open/save need to be aware of uninstalled formats) closed by
- fixed
- 1:22 PM Ticket #4146 (DataDir not included in bundle) created by
- […] themes_DataDir.zip
- 11:12 AM Ticket #4142 (Crash in QtWebEngineCore in updateDirtyNodes()) closed by
- can't reproduce: There have been 15 ChimeraX bug reports of this crash in the Qt …
- 10:40 AM Ticket #4145 (Floating point 'increment' not allowed in "volume planes" command ...) closed by
- fixed: Fixed in tonight's ChimeraX daily build. Thanks for the detailed bug …
- 10:25 AM Ticket #4143 (Windows crash at startup showing rapid access) closed by
- can't reproduce: This Windows crash is during ChimeraX startup. The splash screen has …
- 9:59 AM Ticket #4141 (Crash in QtWebEngineCore) closed by
- can't reproduce
- 9:54 AM Ticket #4140 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate: Hi Ziyi, Thanks for reporting this problem. It has been fixed in the …
- 8:46 AM Ticket #4145 (Floating point 'increment' not allowed in "volume planes" command ...) created by
- […] planes_bug.cxc
- 6:40 AM Ticket #4144 (Bad info from RCSB when querying blast results) created by
- […]
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