Opened 5 years ago

Closed 5 years ago

#4146 closed defect (fixed)

DataDir not included in bundle

Reported by: Tony Schaefer Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc: chimera-programmers
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.dev202101181826 (2021-01-18 18:26:21 UTC)
Description
DataDir doesn't seem to work for the bundle's package.

Relavant portions of bundle_info.xml:

<DataFiles>
    <DataDir>style_sheets</DataDir>
</DataFiles>

style_sheets is a directory in src containing some files with .qss extensions. I'd expect the directory and any files in it to be added to the package, but the directory is not added. I also tried explicitly stating the package in the DataFiles section, but that didn't work.

I know I had issues with a previous version of ChimeraX getting DataFiles to work for an additional package (#3750), but DataDir works for me with an additional package (at least for SEQCROW). 

Attached is a version of the bundle source code.

Log:
> cd C:\Users\normn/Desktop

Current working directory is: C:\Users\normn\Desktop  
UCSF ChimeraX version: 1.2.dev202101181826 (2021-01-18)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> devel build ../Documents/GitHub/DarkTheme

Bundle renamed to 'ChimeraX-themes' after replacing underscores with hyphens.  

running build  
running build_py  
running bdist_wheel  
installing to build\bdist.win-amd64\wheel  
running install  
running install_lib  
creating build\bdist.win-amd64\wheel  
creating build\bdist.win-amd64\wheel\themes  
copying build\lib\themes\settings.py -> build\bdist.win-amd64\wheel\\.\themes  
copying build\lib\themes\\__init__.py -> build\bdist.win-amd64\wheel\\.\themes  
running install_egg_info  
running egg_info  
writing ChimeraX_themes.egg-info\PKG-INFO  
writing dependency_links to ChimeraX_themes.egg-info\dependency_links.txt  
writing requirements to ChimeraX_themes.egg-info\requires.txt  
writing top-level names to ChimeraX_themes.egg-info\top_level.txt  
reading manifest file 'ChimeraX_themes.egg-info\SOURCES.txt'  
writing manifest file 'ChimeraX_themes.egg-info\SOURCES.txt'  
Copying ChimeraX_themes.egg-info to build\bdist.win-
amd64\wheel\\.\ChimeraX_themes-0.2a1-py3.8.egg-info  
running install_scripts  
adding license file "license.txt" (matched pattern "LICEN[CS]E*")  
creating build\bdist.win-amd64\wheel\ChimeraX_themes-0.2a1.dist-info\WHEEL  
creating 'dist\ChimeraX_themes-0.2a1-py3-none-any.whl' and adding
'build\bdist.win-amd64\wheel' to it  
adding 'themes/__init__.py'  
adding 'themes/settings.py'  
adding 'ChimeraX_themes-0.2a1.dist-info/METADATA'  
adding 'ChimeraX_themes-0.2a1.dist-info/WHEEL'  
adding 'ChimeraX_themes-0.2a1.dist-info/license.txt'  
adding 'ChimeraX_themes-0.2a1.dist-info/top_level.txt'  
adding 'ChimeraX_themes-0.2a1.dist-info/RECORD'  
removing build\bdist.win-amd64\wheel  
Distribution is in
../Documents/GitHub/DarkTheme\dist\ChimeraX_themes-0.2a1-py3-none-any.whl  
  

> toolshed install
> ../Documents/GitHub/DarkTheme/dist/ChimeraX_themes-0.2a1-py3-none-any.whl

Successfully installed ChimeraX-themes-0.2a1  
Installed ChimeraX-themes (0.2a1)  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 349, in initialize  
api._api_caller.initialize(api, session, self)  
File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1262, in initialize  
return cls._get_func(api, "initialize")(session, bi)  
File "C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\themes\\__init__.py", line 10, in initialize  
from themes import settings as theme_settings  
File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\Lib\site-
packages\shiboken2\files.dir\shibokensupport\\__feature__.py", line 142, in
_import  
return original_import(name, *args, **kwargs)  
File "C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\themes\settings.py", line 28, in <module>  
class ThemeOption(SymbolicEnumOption):  
File "C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\themes\settings.py", line 29, in ThemeOption  
values, labels = get_themes()  
File "C:\Users\normn\AppData\Local\UCSF\ChimeraX\1.2\site-
packages\themes\settings.py", line 16, in get_themes  
for f in os.listdir(theme_dir):  
FileNotFoundError: [WinError 3] The system cannot find the path specified:
'C:\\\Users\\\normn\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\1.2\\\site-
packages\\\themes\\\themes\\\style_sheets'  
  

ChimeraX-themes (installed) [version: 0.2a1] [api package: themes] [category:
UI]: custom initialization failed  

> devel build ../Documents/GitHub/ChimAARON

Bundle renamed to 'ChimeraX-SEQCROW' after replacing underscores with hyphens.  

running build  
running build_py  
copying src\settings.py -> build\lib\SEQCROW  
copying src\commands\percent_Vbur.py -> build\lib\SEQCROW\commands  
copying C:\Users\normn\Documents\GitHub\AaronTools\geometry.py ->
build\lib\AaronTools  
copying C:\Users\normn\Documents\GitHub\AaronTools\test\test_cls.py ->
build\lib\AaronTools\test  
copying C:\Users\normn\Documents\GitHub\AaronTools\utils\utils.py ->
build\lib\AaronTools\utils  
running bdist_wheel  
installing to build\bdist.win-amd64\wheel  
running install  
running install_lib  
creating build\bdist.win-amd64\wheel  
creating build\bdist.win-amd64\wheel\AaronTools  
copying build\lib\AaronTools\atoms.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\calculated_bond_lengths.json -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\component.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\comp_output.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\config.ini -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\config.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\const.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\fileIO.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\finders.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\geometry.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\job_control.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\json_extension.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\LICENSE -> build\bdist.win-
amd64\wheel\\.\AaronTools  
creating build\bdist.win-amd64\wheel\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\AcAc.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\achiral_ligands -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\ACN.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Ad-HC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BDA.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BenQuin.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\bi-isoquinoline-NN-dioxide.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BiOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BiOx_Me.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BPE.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\BPY.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\chiral_ligands -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\CO.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\COD.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Cp.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Cp_star.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\dithiolate-4F.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DMBPY.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DMP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DMPE.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DPEphos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DPPE.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DPPF.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\DPPP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\EDA.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\IMes.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\iPr-NC3C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\iPr-PNPEt.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\iPrPh-BIP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\iPrPh-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\JoshPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\KASBAI.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Mes-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Milstein.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\NBD.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\organocatalysts -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Paton_DL.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Paton_EL.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PhBP3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PHNNP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PIN.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PPh3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PymdOx.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\PyrOx.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-BINAP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-iPr-PyBOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-Me-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-pFPh-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-Ph-BOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-Ph-Mes-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-Quinox-AdtBu2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-Quinox-tBu3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-SEGPHOS.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R-tBu-BOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-BDPP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-BPCp.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-Et-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-iPr-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-Me-BPE.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-Me-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-Me-iPrPh-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-Me-TBF.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-norphos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RR-QuinoxP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\RRSS-DuanPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\R_temp.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-BINAP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-iPr-PyBOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-Me-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-pFPh-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-Ph-BOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-Ph-Mes-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-Quinox-AdtBu2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-Quinox-tBu3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-SEGPHOS.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-StackPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\S-tBu-BOX.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SL-J212-1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SL-J212-2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\squaramide-iPr.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\squaramide.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-BDPP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-BPCp.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-Et-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-iPr-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-Me-BPE.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-Me-DuPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-Me-iPrPh-NC5C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-Me-TBF.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-norphos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SS-QuinoxP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\SSRR-DuanPhos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\TACN.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\TACN_star.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\tBu-PCP.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\tBu-PNPPyr.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Tp.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Xantphos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\Ligands\Xphos.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Ligands  
copying build\lib\AaronTools\new_fileIO.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\pathway.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\README.md -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\ring.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
creating build\bdist.win-amd64\wheel\AaronTools\Rings  
copying build\lib\AaronTools\Rings\benzene.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclohexane-chair.1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclohexane-chair.2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclohexane.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.5.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.6.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentadiene.7.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.4.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.5.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\Rings\cyclopentane.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Rings  
copying build\lib\AaronTools\setup.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
copying build\lib\AaronTools\substituent.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
creating build\bdist.win-amd64\wheel\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\26-F-Ph.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\35-F-Ph.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Ad.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\BF2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Br.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CCH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CF3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CH2Cl.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CH2F.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CH2OH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CHCH2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CHCl2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CHF2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CHO.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Cl.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\CN.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\COCH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\COOCH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\COOH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Cy.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Et.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\F.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\H.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\I.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\iPr.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Me.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Mes.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NCH3_2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NH2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NHCH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NHOH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NO.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\NO2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\O.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\OCF3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\OH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\OMe.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\Ph.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\SCH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\SH.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\SiF3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\SiH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\subs -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\SuperMes.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\tBu.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\triazole_C.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
copying build\lib\AaronTools\Substituents\triazole_N.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\Substituents  
creating build\bdist.win-amd64\wheel\AaronTools\test  
creating build\bdist.win-amd64\wheel\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\atom.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\benzene_dimer_ref.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\cat.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
creating build\bdist.win-
amd64\wheel\AaronTools\test\ref_files\change_chirality_cls  
copying
build\lib\AaronTools\test\ref_files\change_chirality_cls\diastereomer-1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\change_chirality_cls  
copying
build\lib\AaronTools\test\ref_files\change_chirality_cls\diastereomer-2.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\change_chirality_cls  
copying
build\lib\AaronTools\test\ref_files\change_chirality_cls\diastereomer-3.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\change_chirality_cls  
copying
build\lib\AaronTools\test\ref_files\change_chirality_cls\diastereomer-4.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\change_chirality_cls  
copying build\lib\AaronTools\test\ref_files\chlorotoluene_180.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\config_blank_init.json ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\config_HOH_init.json ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\conf_spec.txt -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\detect_components.json ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\file_io_died.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\file_io_error.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\file_io_normal.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\freq.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\geometry.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_4.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_5.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_6.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\lig_map_7.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\log.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\make_conf_1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\make_conf_2.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
creating build\bdist.win-amd64\wheel\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-2.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-3.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-4.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-5.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-6.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-7.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\make_conf_cls\conformer-8.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files\make_conf_cls  
copying build\lib\AaronTools\test\ref_files\minimize_torsion.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\naphthalene.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\orca_geom.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\psi4_geom.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\pyrene.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\sub.json -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\sub_rotate.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\tetrahydronaphthalene.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\torsion_interpolation.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\vbur.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\ref_files\vbur2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\ref_files  
copying build\lib\AaronTools\test\test_atoms.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_cls.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_component.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_comp_output.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_config.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_fetch.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_fileIO.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
creating build\bdist.win-amd64\wheel\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\5a-sub1.R.ts1.Cf1.3.com ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\6a2e5am1hex.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_1-NO2_4-Cl.can.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_1-NO2_4-Cl.txt ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_1-NO2_4-Cl.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_1-OH_4-Cl.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_1-Ph_4-Cl.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_4-Cl.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\benzene_dimer.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
creating build\bdist.win-amd64\wheel\AaronTools\test\test_files\catalysts  
copying build\lib\AaronTools\test\test_files\catalysts\org_1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\catalysts  
copying build\lib\AaronTools\test\test_files\catalysts\org_tri.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\catalysts  
copying build\lib\AaronTools\test\test_files\catalysts\tm_multi-lig.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\catalysts  
copying build\lib\AaronTools\test\test_files\catalysts\tm_single-lig.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\catalysts  
copying build\lib\AaronTools\test\test_files\change_dihedral_0.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chiral_centers_1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chiral_centers_2.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chiral_centers_3.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chiral_centers_4.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chiral_ring.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\chlorotoluene.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\COCH3.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\config_blank.ini ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\config_HOH.ini ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\died.log -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\error.log -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\Et_1-NO2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\freq.log -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
creating build\bdist.win-amd64\wheel\AaronTools\test\test_files\ligands  
copying build\lib\AaronTools\test\test_files\ligands\ACN.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\ligands  
copying build\lib\AaronTools\test\test_files\ligands\R-Quinox-tBu3.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\ligands  
copying build\lib\AaronTools\test\test_files\ligands\S-tBu-BOX.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\ligands  
copying build\lib\AaronTools\test\test_files\ligands\squaramide.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files\ligands  
copying build\lib\AaronTools\test\test_files\lig_1.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\lig_2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\NO2.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\normal.log -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\opt_constraint.log ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\opt_normal.log ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\opt_running.log ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\orca_geom.out -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\pentane.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\psi4-test.out -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\ptco4.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\pyridine.xyz -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\R-Quinox-tBu3.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\step3.log -> build\bdist.win-
amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\test-route-2.com ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\test-route.com ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\test_rmsd_sort1.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\test_rmsd_sort2.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\torsion-60.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_files\torsion-90.xyz ->
build\bdist.win-amd64\wheel\\.\AaronTools\test\test_files  
copying build\lib\AaronTools\test\test_finders.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_geometry.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_json_extension.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_pathway.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_substituent.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\test_utils.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test\\__init__.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\test  
copying build\lib\AaronTools\test.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
creating build\bdist.win-amd64\wheel\AaronTools\theory  
copying build\lib\AaronTools\theory\basis.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\emp_dispersion.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\grid.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\implicit_solvent.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\job_types.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\method.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\theory.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
copying build\lib\AaronTools\theory\\__init__.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\theory  
creating build\bdist.win-amd64\wheel\AaronTools\utils  
copying build\lib\AaronTools\utils\prime_numbers.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils  
creating build\bdist.win-amd64\wheel\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb110.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb1454.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb194.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb2030.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb2702.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb302.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb5810.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb590.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leb974.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg127.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg20.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg32.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg64.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg75.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\Leg99.grid -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\quad_grids\NOTES -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils\quad_grids  
copying build\lib\AaronTools\utils\utils.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils  
copying build\lib\AaronTools\utils\\__init__.py -> build\bdist.win-
amd64\wheel\\.\AaronTools\utils  
creating build\bdist.win-amd64\wheel\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\fetch.cpython-36.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\prime_numbers.cpython-36.pyc
-> build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\prime_numbers.cpython-37.pyc
-> build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\prime_numbers.cpython-38.pyc
-> build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\utils.cpython-36.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\utils.cpython-37.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\utils.cpython-38.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\\__init__.cpython-37.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\utils\\__pycache__\\__init__.cpython-38.pyc ->
build\bdist.win-amd64\wheel\\.\AaronTools\utils\\__pycache__  
copying build\lib\AaronTools\\__init__.py -> build\bdist.win-
amd64\wheel\\.\AaronTools  
creating build\bdist.win-amd64\wheel\SEQCROW  
creating build\bdist.win-amd64\wheel\SEQCROW\commands  
copying build\lib\SEQCROW\commands\duplicate.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\fuseRing.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\percent_Vbur.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\rmsdAlign.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\sterimol.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\substitute.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\tsbond.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\commands\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\commands  
copying build\lib\SEQCROW\finders.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\io.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\jobs.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\libraries.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW  
creating build\bdist.win-amd64\wheel\SEQCROW\managers  
copying build\lib\SEQCROW\managers\filereader_manager.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\managers  
copying build\lib\SEQCROW\managers\job_manager.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\managers  
copying build\lib\SEQCROW\managers\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\managers  
copying build\lib\SEQCROW\presets.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\residue_collection.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\selectors.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW  
copying build\lib\SEQCROW\settings.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW  
creating build\bdist.win-amd64\wheel\SEQCROW\tests  
copying build\lib\SEQCROW\tests\fuseRing_command.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\tests\input_builder.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\tests\normal_modes.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\tests\substitute_command.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\tests\test_testing.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\tests\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tests  
copying build\lib\SEQCROW\theory.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
creating build\bdist.win-amd64\wheel\SEQCROW\tools  
copying build\lib\SEQCROW\tools\aaron_input_builder.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\bond_editor.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\browse_aarontools.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\compute_thermo.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\filereader_panel.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\info.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\input_generator.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\job_manager_tool.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\libadd.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\normal_modes.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\percent_Vbur.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\per_frame_plot.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\precision_rotate.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\sterimol.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\structure_editing.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\tools\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\tools  
copying build\lib\SEQCROW\utils.py -> build\bdist.win-amd64\wheel\\.\SEQCROW  
creating build\bdist.win-amd64\wheel\SEQCROW\widgets  
copying build\lib\SEQCROW\widgets\comboboxes.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\widgets  
copying build\lib\SEQCROW\widgets\periodic_table.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\widgets  
copying build\lib\SEQCROW\widgets\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW\widgets  
copying build\lib\SEQCROW\\__init__.py -> build\bdist.win-
amd64\wheel\\.\SEQCROW  
running install_egg_info  
running egg_info  
writing ChimeraX_SEQCROW.egg-info\PKG-INFO  
writing dependency_links to ChimeraX_SEQCROW.egg-info\dependency_links.txt  
writing requirements to ChimeraX_SEQCROW.egg-info\requires.txt  
writing top-level names to ChimeraX_SEQCROW.egg-info\top_level.txt  
reading manifest file 'ChimeraX_SEQCROW.egg-info\SOURCES.txt'  
writing manifest file 'ChimeraX_SEQCROW.egg-info\SOURCES.txt'  
Copying ChimeraX_SEQCROW.egg-info to build\bdist.win-
amd64\wheel\\.\ChimeraX_SEQCROW-0.24a0-py3.8.egg-info  
running install_scripts  
adding license file "license.txt" (matched pattern "LICEN[CS]E*")  
creating build\bdist.win-amd64\wheel\ChimeraX_SEQCROW-0.24a0.dist-info\WHEEL  
creating 'dist\ChimeraX_SEQCROW-0.24a0-py3-none-any.whl' and adding
'build\bdist.win-amd64\wheel' to it  
adding 'AaronTools/LICENSE'  
adding 'AaronTools/README.md'  
adding 'AaronTools/__init__.py'  
adding 'AaronTools/atoms.py'  
adding 'AaronTools/calculated_bond_lengths.json'  
adding 'AaronTools/comp_output.py'  
adding 'AaronTools/component.py'  
adding 'AaronTools/config.ini'  
adding 'AaronTools/config.py'  
adding 'AaronTools/const.py'  
adding 'AaronTools/fileIO.py'  
adding 'AaronTools/finders.py'  
adding 'AaronTools/geometry.py'  
adding 'AaronTools/job_control.py'  
adding 'AaronTools/json_extension.py'  
adding 'AaronTools/new_fileIO.py'  
adding 'AaronTools/pathway.py'  
adding 'AaronTools/ring.py'  
adding 'AaronTools/setup.py'  
adding 'AaronTools/substituent.py'  
adding 'AaronTools/test.py'  
adding 'AaronTools/Ligands/ACN.xyz'  
adding 'AaronTools/Ligands/AcAc.xyz'  
adding 'AaronTools/Ligands/Ad-HC5C.xyz'  
adding 'AaronTools/Ligands/BDA.xyz'  
adding 'AaronTools/Ligands/BPE.xyz'  
adding 'AaronTools/Ligands/BPY.xyz'  
adding 'AaronTools/Ligands/BenQuin.xyz'  
adding 'AaronTools/Ligands/BiOX.xyz'  
adding 'AaronTools/Ligands/BiOx_Me.xyz'  
adding 'AaronTools/Ligands/CO.xyz'  
adding 'AaronTools/Ligands/COD.xyz'  
adding 'AaronTools/Ligands/Cp.xyz'  
adding 'AaronTools/Ligands/Cp_star.xyz'  
adding 'AaronTools/Ligands/DMBPY.xyz'  
adding 'AaronTools/Ligands/DMP.xyz'  
adding 'AaronTools/Ligands/DMPE.xyz'  
adding 'AaronTools/Ligands/DPEphos.xyz'  
adding 'AaronTools/Ligands/DPPE.xyz'  
adding 'AaronTools/Ligands/DPPF.xyz'  
adding 'AaronTools/Ligands/DPPP.xyz'  
adding 'AaronTools/Ligands/EDA.xyz'  
adding 'AaronTools/Ligands/IMes.xyz'  
adding 'AaronTools/Ligands/JoshPhos.xyz'  
adding 'AaronTools/Ligands/KASBAI.xyz'  
adding 'AaronTools/Ligands/Mes-NC5C.xyz'  
adding 'AaronTools/Ligands/Milstein.xyz'  
adding 'AaronTools/Ligands/NBD.xyz'  
adding 'AaronTools/Ligands/PHNNP.xyz'  
adding 'AaronTools/Ligands/PIN.xyz'  
adding 'AaronTools/Ligands/PPh3.xyz'  
adding 'AaronTools/Ligands/Paton_DL.xyz'  
adding 'AaronTools/Ligands/Paton_EL.xyz'  
adding 'AaronTools/Ligands/PhBP3.xyz'  
adding 'AaronTools/Ligands/PymdOx.xyz'  
adding 'AaronTools/Ligands/PyrOx.xyz'  
adding 'AaronTools/Ligands/R-BINAP.xyz'  
adding 'AaronTools/Ligands/R-Me-StackPhos.xyz'  
adding 'AaronTools/Ligands/R-Ph-BOX.xyz'  
adding 'AaronTools/Ligands/R-Ph-Mes-NC5C.xyz'  
adding 'AaronTools/Ligands/R-Quinox-AdtBu2.xyz'  
adding 'AaronTools/Ligands/R-Quinox-tBu3.xyz'  
adding 'AaronTools/Ligands/R-SEGPHOS.xyz'  
adding 'AaronTools/Ligands/R-StackPhos.xyz'  
adding 'AaronTools/Ligands/R-iPr-PyBOX.xyz'  
adding 'AaronTools/Ligands/R-pFPh-StackPhos.xyz'  
adding 'AaronTools/Ligands/R-tBu-BOX.xyz'  
adding 'AaronTools/Ligands/RR-BDPP.xyz'  
adding 'AaronTools/Ligands/RR-BPCp.xyz'  
adding 'AaronTools/Ligands/RR-Et-DuPhos.xyz'  
adding 'AaronTools/Ligands/RR-Me-BPE.xyz'  
adding 'AaronTools/Ligands/RR-Me-DuPhos.xyz'  
adding 'AaronTools/Ligands/RR-Me-TBF.xyz'  
adding 'AaronTools/Ligands/RR-Me-iPrPh-NC5C.xyz'  
adding 'AaronTools/Ligands/RR-QuinoxP.xyz'  
adding 'AaronTools/Ligands/RR-iPr-DuPhos.xyz'  
adding 'AaronTools/Ligands/RR-norphos.xyz'  
adding 'AaronTools/Ligands/RRSS-DuanPhos.xyz'  
adding 'AaronTools/Ligands/R_temp.xyz'  
adding 'AaronTools/Ligands/S-BINAP.xyz'  
adding 'AaronTools/Ligands/S-Me-StackPhos.xyz'  
adding 'AaronTools/Ligands/S-Ph-BOX.xyz'  
adding 'AaronTools/Ligands/S-Ph-Mes-NC5C.xyz'  
adding 'AaronTools/Ligands/S-Quinox-AdtBu2.xyz'  
adding 'AaronTools/Ligands/S-Quinox-tBu3.xyz'  
adding 'AaronTools/Ligands/S-SEGPHOS.xyz'  
adding 'AaronTools/Ligands/S-StackPhos.xyz'  
adding 'AaronTools/Ligands/S-iPr-PyBOX.xyz'  
adding 'AaronTools/Ligands/S-pFPh-StackPhos.xyz'  
adding 'AaronTools/Ligands/S-tBu-BOX.xyz'  
adding 'AaronTools/Ligands/SL-J212-1.xyz'  
adding 'AaronTools/Ligands/SL-J212-2.xyz'  
adding 'AaronTools/Ligands/SS-BDPP.xyz'  
adding 'AaronTools/Ligands/SS-BPCp.xyz'  
adding 'AaronTools/Ligands/SS-Et-DuPhos.xyz'  
adding 'AaronTools/Ligands/SS-Me-BPE.xyz'  
adding 'AaronTools/Ligands/SS-Me-DuPhos.xyz'  
adding 'AaronTools/Ligands/SS-Me-TBF.xyz'  
adding 'AaronTools/Ligands/SS-Me-iPrPh-NC5C.xyz'  
adding 'AaronTools/Ligands/SS-QuinoxP.xyz'  
adding 'AaronTools/Ligands/SS-iPr-DuPhos.xyz'  
adding 'AaronTools/Ligands/SS-norphos.xyz'  
adding 'AaronTools/Ligands/SSRR-DuanPhos.xyz'  
adding 'AaronTools/Ligands/TACN.xyz'  
adding 'AaronTools/Ligands/TACN_star.xyz'  
adding 'AaronTools/Ligands/Tp.xyz'  
adding 'AaronTools/Ligands/Xantphos.xyz'  
adding 'AaronTools/Ligands/Xphos.xyz'  
adding 'AaronTools/Ligands/achiral_ligands'  
adding 'AaronTools/Ligands/bi-isoquinoline-NN-dioxide.xyz'  
adding 'AaronTools/Ligands/chiral_ligands'  
adding 'AaronTools/Ligands/dithiolate-4F.xyz'  
adding 'AaronTools/Ligands/iPr-NC3C.xyz'  
adding 'AaronTools/Ligands/iPr-PNPEt.xyz'  
adding 'AaronTools/Ligands/iPrPh-BIP.xyz'  
adding 'AaronTools/Ligands/iPrPh-NC5C.xyz'  
adding 'AaronTools/Ligands/organocatalysts'  
adding 'AaronTools/Ligands/squaramide-iPr.xyz'  
adding 'AaronTools/Ligands/squaramide.xyz'  
adding 'AaronTools/Ligands/tBu-PCP.xyz'  
adding 'AaronTools/Ligands/tBu-PNPPyr.xyz'  
adding 'AaronTools/Rings/benzene.xyz'  
adding 'AaronTools/Rings/cyclohexane-chair.1.xyz'  
adding 'AaronTools/Rings/cyclohexane-chair.2.xyz'  
adding 'AaronTools/Rings/cyclohexane.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.1.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.2.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.3.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.5.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.6.xyz'  
adding 'AaronTools/Rings/cyclopentadiene.7.xyz'  
adding 'AaronTools/Rings/cyclopentane.1.xyz'  
adding 'AaronTools/Rings/cyclopentane.2.xyz'  
adding 'AaronTools/Rings/cyclopentane.3.xyz'  
adding 'AaronTools/Rings/cyclopentane.4.xyz'  
adding 'AaronTools/Rings/cyclopentane.5.xyz'  
adding 'AaronTools/Rings/cyclopentane.xyz'  
adding 'AaronTools/Substituents/26-F-Ph.xyz'  
adding 'AaronTools/Substituents/35-F-Ph.xyz'  
adding 'AaronTools/Substituents/Ad.xyz'  
adding 'AaronTools/Substituents/BF2.xyz'  
adding 'AaronTools/Substituents/Br.xyz'  
adding 'AaronTools/Substituents/CCH.xyz'  
adding 'AaronTools/Substituents/CF3.xyz'  
adding 'AaronTools/Substituents/CH2Cl.xyz'  
adding 'AaronTools/Substituents/CH2F.xyz'  
adding 'AaronTools/Substituents/CH2OH.xyz'  
adding 'AaronTools/Substituents/CH3.xyz'  
adding 'AaronTools/Substituents/CHCH2.xyz'  
adding 'AaronTools/Substituents/CHCl2.xyz'  
adding 'AaronTools/Substituents/CHF2.xyz'  
adding 'AaronTools/Substituents/CHO.xyz'  
adding 'AaronTools/Substituents/CN.xyz'  
adding 'AaronTools/Substituents/COCH3.xyz'  
adding 'AaronTools/Substituents/COOCH3.xyz'  
adding 'AaronTools/Substituents/COOH.xyz'  
adding 'AaronTools/Substituents/Cl.xyz'  
adding 'AaronTools/Substituents/Cy.xyz'  
adding 'AaronTools/Substituents/Et.xyz'  
adding 'AaronTools/Substituents/F.xyz'  
adding 'AaronTools/Substituents/H.xyz'  
adding 'AaronTools/Substituents/I.xyz'  
adding 'AaronTools/Substituents/Me.xyz'  
adding 'AaronTools/Substituents/Mes.xyz'  
adding 'AaronTools/Substituents/NCH3_2.xyz'  
adding 'AaronTools/Substituents/NH2.xyz'  
adding 'AaronTools/Substituents/NHCH3.xyz'  
adding 'AaronTools/Substituents/NHOH.xyz'  
adding 'AaronTools/Substituents/NO.xyz'  
adding 'AaronTools/Substituents/NO2.xyz'  
adding 'AaronTools/Substituents/O.xyz'  
adding 'AaronTools/Substituents/OCF3.xyz'  
adding 'AaronTools/Substituents/OH.xyz'  
adding 'AaronTools/Substituents/OMe.xyz'  
adding 'AaronTools/Substituents/Ph.xyz'  
adding 'AaronTools/Substituents/SCH3.xyz'  
adding 'AaronTools/Substituents/SH.xyz'  
adding 'AaronTools/Substituents/SiF3.xyz'  
adding 'AaronTools/Substituents/SiH3.xyz'  
adding 'AaronTools/Substituents/SuperMes.xyz'  
adding 'AaronTools/Substituents/iPr.xyz'  
adding 'AaronTools/Substituents/subs'  
adding 'AaronTools/Substituents/tBu.xyz'  
adding 'AaronTools/Substituents/triazole_C.xyz'  
adding 'AaronTools/Substituents/triazole_N.xyz'  
adding 'AaronTools/test/__init__.py'  
adding 'AaronTools/test/test_atoms.py'  
adding 'AaronTools/test/test_cls.py'  
adding 'AaronTools/test/test_comp_output.py'  
adding 'AaronTools/test/test_component.py'  
adding 'AaronTools/test/test_config.py'  
adding 'AaronTools/test/test_fetch.py'  
adding 'AaronTools/test/test_fileIO.py'  
adding 'AaronTools/test/test_finders.py'  
adding 'AaronTools/test/test_geometry.py'  
adding 'AaronTools/test/test_json_extension.py'  
adding 'AaronTools/test/test_pathway.py'  
adding 'AaronTools/test/test_substituent.py'  
adding 'AaronTools/test/test_utils.py'  
adding 'AaronTools/test/ref_files/atom.json'  
adding 'AaronTools/test/ref_files/benzene_dimer_ref.xyz'  
adding 'AaronTools/test/ref_files/cat.json'  
adding 'AaronTools/test/ref_files/chlorotoluene_180.xyz'  
adding 'AaronTools/test/ref_files/conf_spec.txt'  
adding 'AaronTools/test/ref_files/config_HOH_init.json'  
adding 'AaronTools/test/ref_files/config_blank_init.json'  
adding 'AaronTools/test/ref_files/detect_components.json'  
adding 'AaronTools/test/ref_files/file_io_died.xyz'  
adding 'AaronTools/test/ref_files/file_io_error.xyz'  
adding 'AaronTools/test/ref_files/file_io_normal.xyz'  
adding 'AaronTools/test/ref_files/freq.json'  
adding 'AaronTools/test/ref_files/geometry.json'  
adding 'AaronTools/test/ref_files/lig.json'  
adding 'AaronTools/test/ref_files/lig_map_1.xyz'  
adding 'AaronTools/test/ref_files/lig_map_2.xyz'  
adding 'AaronTools/test/ref_files/lig_map_3.xyz'  
adding 'AaronTools/test/ref_files/lig_map_4.xyz'  
adding 'AaronTools/test/ref_files/lig_map_5.xyz'  
adding 'AaronTools/test/ref_files/lig_map_6.xyz'  
adding 'AaronTools/test/ref_files/lig_map_7.xyz'  
adding 'AaronTools/test/ref_files/log.json'  
adding 'AaronTools/test/ref_files/make_conf_1.xyz'  
adding 'AaronTools/test/ref_files/make_conf_2.xyz'  
adding 'AaronTools/test/ref_files/minimize_torsion.xyz'  
adding 'AaronTools/test/ref_files/naphthalene.xyz'  
adding 'AaronTools/test/ref_files/orca_geom.xyz'  
adding 'AaronTools/test/ref_files/psi4_geom.xyz'  
adding 'AaronTools/test/ref_files/pyrene.xyz'  
adding 'AaronTools/test/ref_files/sub.json'  
adding 'AaronTools/test/ref_files/sub_rotate.xyz'  
adding 'AaronTools/test/ref_files/tetrahydronaphthalene.xyz'  
adding 'AaronTools/test/ref_files/torsion_interpolation.xyz'  
adding 'AaronTools/test/ref_files/vbur.xyz'  
adding 'AaronTools/test/ref_files/vbur2.xyz'  
adding 'AaronTools/test/ref_files/change_chirality_cls/diastereomer-1.xyz'  
adding 'AaronTools/test/ref_files/change_chirality_cls/diastereomer-2.xyz'  
adding 'AaronTools/test/ref_files/change_chirality_cls/diastereomer-3.xyz'  
adding 'AaronTools/test/ref_files/change_chirality_cls/diastereomer-4.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-1.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-2.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-3.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-4.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-5.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-6.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-7.xyz'  
adding 'AaronTools/test/ref_files/make_conf_cls/conformer-8.xyz'  
adding 'AaronTools/test/test_files/5a-sub1.R.ts1.Cf1.3.com'  
adding 'AaronTools/test/test_files/6a2e5am1hex.xyz'  
adding 'AaronTools/test/test_files/COCH3.xyz'  
adding 'AaronTools/test/test_files/Et_1-NO2.xyz'  
adding 'AaronTools/test/test_files/NO2.xyz'  
adding 'AaronTools/test/test_files/R-Quinox-tBu3.xyz'  
adding 'AaronTools/test/test_files/benzene.xyz'  
adding 'AaronTools/test/test_files/benzene_1-NO2_4-Cl.can.xyz'  
adding 'AaronTools/test/test_files/benzene_1-NO2_4-Cl.txt'  
adding 'AaronTools/test/test_files/benzene_1-NO2_4-Cl.xyz'  
adding 'AaronTools/test/test_files/benzene_1-OH_4-Cl.xyz'  
adding 'AaronTools/test/test_files/benzene_1-Ph_4-Cl.xyz'  
adding 'AaronTools/test/test_files/benzene_4-Cl.xyz'  
adding 'AaronTools/test/test_files/benzene_dimer.xyz'  
adding 'AaronTools/test/test_files/change_dihedral_0.xyz'  
adding 'AaronTools/test/test_files/chiral_centers_1.xyz'  
adding 'AaronTools/test/test_files/chiral_centers_2.xyz'  
adding 'AaronTools/test/test_files/chiral_centers_3.xyz'  
adding 'AaronTools/test/test_files/chiral_centers_4.xyz'  
adding 'AaronTools/test/test_files/chiral_ring.xyz'  
adding 'AaronTools/test/test_files/chlorotoluene.xyz'  
adding 'AaronTools/test/test_files/config_HOH.ini'  
adding 'AaronTools/test/test_files/config_blank.ini'  
adding 'AaronTools/test/test_files/died.log'  
adding 'AaronTools/test/test_files/error.log'  
adding 'AaronTools/test/test_files/freq.log'  
adding 'AaronTools/test/test_files/lig_1.xyz'  
adding 'AaronTools/test/test_files/lig_2.xyz'  
adding 'AaronTools/test/test_files/normal.log'  
adding 'AaronTools/test/test_files/opt_constraint.log'  
adding 'AaronTools/test/test_files/opt_normal.log'  
adding 'AaronTools/test/test_files/opt_running.log'  
adding 'AaronTools/test/test_files/orca_geom.out'  
adding 'AaronTools/test/test_files/pentane.xyz'  
adding 'AaronTools/test/test_files/psi4-test.out'  
adding 'AaronTools/test/test_files/ptco4.xyz'  
adding 'AaronTools/test/test_files/pyridine.xyz'  
adding 'AaronTools/test/test_files/step3.log'  
adding 'AaronTools/test/test_files/test-route-2.com'  
adding 'AaronTools/test/test_files/test-route.com'  
adding 'AaronTools/test/test_files/test_rmsd_sort1.xyz'  
adding 'AaronTools/test/test_files/test_rmsd_sort2.xyz'  
adding 'AaronTools/test/test_files/torsion-60.xyz'  
adding 'AaronTools/test/test_files/torsion-90.xyz'  
adding 'AaronTools/test/test_files/catalysts/org_1.xyz'  
adding 'AaronTools/test/test_files/catalysts/org_tri.xyz'  
adding 'AaronTools/test/test_files/catalysts/tm_multi-lig.xyz'  
adding 'AaronTools/test/test_files/catalysts/tm_single-lig.xyz'  
adding 'AaronTools/test/test_files/ligands/ACN.xyz'  
adding 'AaronTools/test/test_files/ligands/R-Quinox-tBu3.xyz'  
adding 'AaronTools/test/test_files/ligands/S-tBu-BOX.xyz'  
adding 'AaronTools/test/test_files/ligands/squaramide.xyz'  
adding 'AaronTools/theory/__init__.py'  
adding 'AaronTools/theory/basis.py'  
adding 'AaronTools/theory/emp_dispersion.py'  
adding 'AaronTools/theory/grid.py'  
adding 'AaronTools/theory/implicit_solvent.py'  
adding 'AaronTools/theory/job_types.py'  
adding 'AaronTools/theory/method.py'  
adding 'AaronTools/theory/theory.py'  
adding 'AaronTools/utils/__init__.py'  
adding 'AaronTools/utils/prime_numbers.py'  
adding 'AaronTools/utils/utils.py'  
adding 'AaronTools/utils/__pycache__/__init__.cpython-37.pyc'  
adding 'AaronTools/utils/__pycache__/__init__.cpython-38.pyc'  
adding 'AaronTools/utils/__pycache__/fetch.cpython-36.pyc'  
adding 'AaronTools/utils/__pycache__/prime_numbers.cpython-36.pyc'  
adding 'AaronTools/utils/__pycache__/prime_numbers.cpython-37.pyc'  
adding 'AaronTools/utils/__pycache__/prime_numbers.cpython-38.pyc'  
adding 'AaronTools/utils/__pycache__/utils.cpython-36.pyc'  
adding 'AaronTools/utils/__pycache__/utils.cpython-37.pyc'  
adding 'AaronTools/utils/__pycache__/utils.cpython-38.pyc'  
adding 'AaronTools/utils/quad_grids/Leb110.grid'  
adding 'AaronTools/utils/quad_grids/Leb1454.grid'  
adding 'AaronTools/utils/quad_grids/Leb194.grid'  
adding 'AaronTools/utils/quad_grids/Leb2030.grid'  
adding 'AaronTools/utils/quad_grids/Leb2702.grid'  
adding 'AaronTools/utils/quad_grids/Leb302.grid'  
adding 'AaronTools/utils/quad_grids/Leb5810.grid'  
adding 'AaronTools/utils/quad_grids/Leb590.grid'  
adding 'AaronTools/utils/quad_grids/Leb974.grid'  
adding 'AaronTools/utils/quad_grids/Leg127.grid'  
adding 'AaronTools/utils/quad_grids/Leg20.grid'  
adding 'AaronTools/utils/quad_grids/Leg32.grid'  
adding 'AaronTools/utils/quad_grids/Leg64.grid'  
adding 'AaronTools/utils/quad_grids/Leg75.grid'  
adding 'AaronTools/utils/quad_grids/Leg99.grid'  
adding 'AaronTools/utils/quad_grids/NOTES'  
adding 'SEQCROW/__init__.py'  
adding 'SEQCROW/finders.py'  
adding 'SEQCROW/io.py'  
adding 'SEQCROW/jobs.py'  
adding 'SEQCROW/libraries.py'  
adding 'SEQCROW/presets.py'  
adding 'SEQCROW/residue_collection.py'  
adding 'SEQCROW/selectors.py'  
adding 'SEQCROW/settings.py'  
adding 'SEQCROW/theory.py'  
adding 'SEQCROW/utils.py'  
adding 'SEQCROW/commands/__init__.py'  
adding 'SEQCROW/commands/duplicate.py'  
adding 'SEQCROW/commands/fuseRing.py'  
adding 'SEQCROW/commands/percent_Vbur.py'  
adding 'SEQCROW/commands/rmsdAlign.py'  
adding 'SEQCROW/commands/sterimol.py'  
adding 'SEQCROW/commands/substitute.py'  
adding 'SEQCROW/commands/tsbond.py'  
adding 'SEQCROW/managers/__init__.py'  
adding 'SEQCROW/managers/filereader_manager.py'  
adding 'SEQCROW/managers/job_manager.py'  
adding 'SEQCROW/tests/__init__.py'  
adding 'SEQCROW/tests/fuseRing_command.py'  
adding 'SEQCROW/tests/input_builder.py'  
adding 'SEQCROW/tests/normal_modes.py'  
adding 'SEQCROW/tests/substitute_command.py'  
adding 'SEQCROW/tests/test_testing.py'  
adding 'SEQCROW/tools/__init__.py'  
adding 'SEQCROW/tools/aaron_input_builder.py'  
adding 'SEQCROW/tools/bond_editor.py'  
adding 'SEQCROW/tools/browse_aarontools.py'  
adding 'SEQCROW/tools/compute_thermo.py'  
adding 'SEQCROW/tools/filereader_panel.py'  
adding 'SEQCROW/tools/info.py'  
adding 'SEQCROW/tools/input_generator.py'  
adding 'SEQCROW/tools/job_manager_tool.py'  
adding 'SEQCROW/tools/libadd.py'  
adding 'SEQCROW/tools/normal_modes.py'  
adding 'SEQCROW/tools/per_frame_plot.py'  
adding 'SEQCROW/tools/percent_Vbur.py'  
adding 'SEQCROW/tools/precision_rotate.py'  
adding 'SEQCROW/tools/sterimol.py'  
adding 'SEQCROW/tools/structure_editing.py'  
adding 'SEQCROW/widgets/__init__.py'  
adding 'SEQCROW/widgets/comboboxes.py'  
adding 'SEQCROW/widgets/periodic_table.py'  
adding 'ChimeraX_SEQCROW-0.24a0.dist-info/METADATA'  
adding 'ChimeraX_SEQCROW-0.24a0.dist-info/WHEEL'  
adding 'ChimeraX_SEQCROW-0.24a0.dist-info/license.txt'  
adding 'ChimeraX_SEQCROW-0.24a0.dist-info/top_level.txt'  
adding 'ChimeraX_SEQCROW-0.24a0.dist-info/RECORD'  
removing build\bdist.win-amd64\wheel  
Distribution is in
../Documents/GitHub/ChimAARON\dist\ChimeraX_SEQCROW-0.24a0-py3-none-any.whl  
  




OpenGL version: 3.3.0 NVIDIA 452.41
OpenGL renderer: GeForce 940M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Hewlett-Packard
Model: HP Pavilion Notebook 
OS: Microsoft Windows 10 Home (Build 19041)
Memory: 8,508,424,192
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-5500U CPU @ 2.40GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PySide2 version: 5.15.2
Qt version: 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.3.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.10.4
    ChimeraX-AtomicLibrary: 1.1.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202101181826
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SEQCROW: 0.24a0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-TestManager: 0.2
    ChimeraX-themes: 0.2a1
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.3.2
    ChimeraX-uniprot: 2.1
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.0
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.2
    numpy: 1.20.0rc2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.8
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 20.3.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.10
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PySide2: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2020.5
    pywin32: 228
    pyzmq: 21.0.1
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    Send2Trash: 1.5.0
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    shiboken2: 5.15.2
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0
    WMI: 1.5.1
File attachment: themes_DataDir.zip

themes_DataDir.zip​

Attachments (1)

themes_DataDir.zip​ (5.6 KB ) - added by Tony Schaefer 5 years ago.
Added by email2trac

Download all attachments as: .zip

Change History (7)

by Tony Schaefer, 5 years ago

Attachment: themes_DataDir.zip​ added

Added by email2trac

comment:1 by Eric Pettersen, 5 years ago

Cc: chimera-programmers added
Component: Unassigned → Tool Shed
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → DataDir not included in bundle

comment:2 by Eric Pettersen, 5 years ago

Status: accepted → feedback

Hi Tony,

My reading of the bundle_info tags documentation (​https://www.cgl.ucsf.edu/chimerax/docs/devel/tutorials/bundle_info.html) is that you just want to use <DataDir>style_sheets</DataDir>, _not_ embedded in a surrounding <DataFiles> block. The former will look in the src dir for style_sheets, which is where they are, whereas the latter will look in the top bundle directory. Could you try that out and let me know if it works? You are better setup for testing this than I am...

--Eric

in reply to:  4 comment:3 by Tony Schaefer, 5 years ago 

Eric,

I get an error message when I do that. Bundle info snippet:

<BundleInfo>
    ...

    <DataDir>style_sheets</DataDir>

</BundleInfo>

cd C:\Users\normn/Desktop
Current working directory is: C:\Users\normn\Desktop
UCSF ChimeraX version: 1.2.dev202101181826 (2021-01-18)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
devel build ../Documents/GitHub/DarkTheme
Bundle renamed to 'ChimeraX-themes' after replacing underscores with hyphens.
Traceback (most recent call last):
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\cmd_line\tool.py", line 275, in execute
    cmd.run(cmd_text)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2852, in run
    result = ci.function(session, **kw_args)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\core\commands\devel.py", line 98, in devel_build
    _run(path, session.logger, exit, BundleBuilder.make_wheel, debug=debug)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\core\commands\devel.py", line 157, in _run
    bb = _get_builder(path, logger)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\core\commands\devel.py", line 201, in _get_builder
    bb = BundleBuilder(logger, bundle_path=path)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\bundle_builder\bundle_builder.py", line 58, in __init__
    self._read_bundle_info(info_file)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\bundle_builder\bundle_builder.py", line 184, in _read_bundle_info
    self._check_unused_elements(bi)
  File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\bundle_builder\bundle_builder.py", line 723, in _check_unused_elements
    print("WARNING: unsupported element:", node.tag())
TypeError: 'str' object is not callable

TypeError: 'str' object is not callable

File "C:\Program Files\ChimeraX 1.2.dev202101181826\bin\lib\site-packages\chimerax\bundle_builder\bundle_builder.py", line 723, in _check_unused_elements
print("WARNING: unsupported element:", node.tag())

See log for complete Python traceback.


No whl file is built.

I also tried

<DataFiles>
    <DataDir>src/style_sheets</DataDir>
</DataFiles>

and moving style_sheets up into the directory containing the src directory with

<DataFiles>
    <DataDir>style_sheets</DataDir>
</DataFiles>

Neither of these added the style_sheets folder or its contents to the bundle.

Tony
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Wednesday, January 20, 2021 1:12 PM
Cc: chimera-programmers@cgl.ucsf.edu <chimera-programmers@cgl.ucsf.edu>; pett@cgl.ucsf.edu <pett@cgl.ucsf.edu>; Anthony James Schaefer <tony.schaefer@uga.edu>
Subject: Re: [ChimeraX] #4146: DataDir not included in bundle

[EXTERNAL SENDER - PROCEED CAUTIOUSLY]


#4146: DataDir not included in bundle
------------------------------------+----------------------------
          Reporter:  Tony Schaefer  |      Owner:  Eric Pettersen
              Type:  defect         |     Status:  feedback
          Priority:  normal         |  Milestone:
         Component:  Tool Shed      |    Version:
        Resolution:                 |   Keywords:
        Blocked By:                 |   Blocking:
Notify when closed:                 |   Platform:  all
           Project:  ChimeraX       |
------------------------------------+----------------------------
Changes (by Eric Pettersen):

 * status:  accepted => feedback


Comment:

 Hi Tony,
         My reading of the bundle_info tags documentation
 (https://www.cgl.ucsf.edu/chimerax/docs/devel/tutorials/bundle_info.html)
 is that you just want to use <DataDir>style_sheets</DataDir>, _not_
 embedded in a surrounding <DataFiles> block.  The former will look in the
 src dir for style_sheets, which is where they are, whereas the latter will
 look in the top bundle directory.  Could you try that out and let me know
 if it works?  You are better setup for testing this than I am...

 --Eric

--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/4146#comment:2>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

in reply to:  5 ; comment:4 by Tony Schaefer, 5 years ago 

I have also tried

<DataFiles>
    <DataFile>style_sheets/solarized dark.qss</DataFile>
    <DataFile>style_sheets/solarized light.qss</DataFile>
</DataFiles>

and this works with "style_sheets" in src. I have tried removing the <DataFiles> section, leaving the individual <DataFile>s, but this resulted in the same "'str' object is not callable" error.

Tony
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Wednesday, January 20, 2021 1:12 PM
Cc: chimera-programmers@cgl.ucsf.edu <chimera-programmers@cgl.ucsf.edu>; pett@cgl.ucsf.edu <pett@cgl.ucsf.edu>; Anthony James Schaefer <tony.schaefer@uga.edu>
Subject: Re: [ChimeraX] #4146: DataDir not included in bundle

[EXTERNAL SENDER - PROCEED CAUTIOUSLY]


#4146: DataDir not included in bundle
------------------------------------+----------------------------
          Reporter:  Tony Schaefer  |      Owner:  Eric Pettersen
              Type:  defect         |     Status:  feedback
          Priority:  normal         |  Milestone:
         Component:  Tool Shed      |    Version:
        Resolution:                 |   Keywords:
        Blocked By:                 |   Blocking:
Notify when closed:                 |   Platform:  all
           Project:  ChimeraX       |
------------------------------------+----------------------------
Changes (by Eric Pettersen):

 * status:  accepted => feedback


Comment:

 Hi Tony,
         My reading of the bundle_info tags documentation
 (https://www.cgl.ucsf.edu/chimerax/docs/devel/tutorials/bundle_info.html)
 is that you just want to use <DataDir>style_sheets</DataDir>, _not_
 embedded in a surrounding <DataFiles> block.  The former will look in the
 src dir for style_sheets, which is where they are, whereas the latter will
 look in the top bundle directory.  Could you try that out and let me know
 if it works?  You are better setup for testing this than I am...

 --Eric

--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/4146#comment:2>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker

comment:5 by Eric Pettersen, 5 years ago

Status: feedback → accepted

Well, that gives me plenty to work on!

comment:6 by Eric Pettersen, 5 years ago

Resolution: → fixed
Status: accepted → closed

Ignore the top-level DataDir thing, I was confused. That tag is only available as a child element of DataFiles. I will be improving the docs to explicitly note which tags are child tags in the child tag documentation itself, not just the parent documentation.

At any rate, fixed in the next daily build. DataDir wasn't prepending the bundle path to "src" if the DataFiles "package" attribute had been omitted.

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