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Opened 5 years ago
Closed 5 years ago
#4139 closed defect (fixed)
Crash calculating H-bonds
| Reported by: | Elaine Meng | Owned by: | Eric Pettersen |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Analysis | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.2.dev202101142201 (2021-01-14 22:01:26 UTC)
Description
I started ChimeraX, opened 1bzm, manually selected part of one of the active-site His and then used command:
swapaa interactive sel HIS
...then in the Rotamers dialog, I clicked Calculate (H-bonds), changed distance tolerance to 0.5, then clicked OK on the H-bond calc dialog. Then, poof, ChimeraX disappeared.
Process: ChimeraX [13038]
Path: /Users/USER/Desktop/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.0 (1.2.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [13038]
User ID: 504
Date/Time: 2021-01-15 15:20:28.000 -0800
OS Version: Mac OS X 10.15.7 (19H114)
Report Version: 12
Anonymous UUID: 2E059A98-7BEC-0474-05F4-65B7CBAB8B4F
Time Awake Since Boot: 26000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000070
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x70:
-->
__TEXT 00000001004f7000-00000001004f8000 [ 4K] r-x/r-x SM=COW /Users/USER/Desktop/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff73d3b33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff73df7e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff73c5293e raise + 26
3 libsystem_platform.dylib 0x00007fff73dec5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 _ctypes.cpython-38-darwin.so 0x0000000105bc7c57 ffi_call_unix64 + 79
6 _ctypes.cpython-38-darwin.so 0x0000000105bc84e5 ffi_call + 901
7 _ctypes.cpython-38-darwin.so 0x0000000105bc2b22 _ctypes_callproc + 882
8 _ctypes.cpython-38-darwin.so 0x0000000105bbc085 PyCFuncPtr_call + 1333
9 org.python.python 0x0000000100523346 _PyObject_MakeTpCall + 374
10 org.python.python 0x0000000100609de4 call_function + 660
11 org.python.python 0x0000000100606abc _PyEval_EvalFrameDefault + 28892
12 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
13 org.python.python 0x0000000100609cb2 call_function + 354
14 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
15 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
16 org.python.python 0x00000001005258d4 object_vacall + 628
17 org.python.python 0x0000000100525ba8 PyObject_CallFunctionObjArgs + 152
18 org.python.python 0x000000010052e076 property_descr_set + 38
19 org.python.python 0x0000000100568522 _PyObject_GenericSetAttrWithDict + 162
20 org.python.python 0x000000010057e79b wrap_setattr + 203
21 org.python.python 0x0000000100523346 _PyObject_MakeTpCall + 374
22 org.python.python 0x0000000100609de4 call_function + 660
23 org.python.python 0x0000000100606a26 _PyEval_EvalFrameDefault + 28742
24 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
25 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
26 org.python.python 0x00000001005246b8 _PyObject_FastCall_Prepend + 120
27 org.python.python 0x000000010057e5d1 slot_tp_setattro + 417
28 org.python.python 0x000000010056793c PyObject_SetAttr + 108
29 org.python.python 0x00000001006032ff _PyEval_EvalFrameDefault + 14623
30 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
31 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
32 org.python.python 0x000000010052368c PyVectorcall_Call + 108
33 org.python.python 0x0000000100606d07 _PyEval_EvalFrameDefault + 29479
34 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
35 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
36 org.python.python 0x000000010052681b method_vectorcall + 171
37 org.python.python 0x0000000100609cb2 call_function + 354
38 org.python.python 0x0000000100606b5c _PyEval_EvalFrameDefault + 29052
39 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
40 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
41 org.python.python 0x0000000100609cb2 call_function + 354
42 org.python.python 0x0000000100606abc _PyEval_EvalFrameDefault + 28892
43 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
44 org.python.python 0x0000000100609cb2 call_function + 354
45 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
46 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
47 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
48 org.python.python 0x000000010052368c PyVectorcall_Call + 108
49 libpyside2.abi3.5.15.dylib 0x000000010f135586 PySide::SignalManager::callPythonMetaMethod(QMetaMethod const&, void**, _object*, bool) + 534
50 libpyside2.abi3.5.15.dylib 0x000000010f13784e PySide::GlobalReceiverV2::qt_metacall(QMetaObject::Call, int, void**) + 638
51 QtCore 0x0000000110075f6e void doActivate(QObject*, int, void**) + 1118
52 QtWidgets 0x000000010f310acc QDialogButtonBoxPrivate::_q_handleButtonClicked() + 780
53 QtCore 0x00000001100760d5 void doActivate(QObject*, int, void**) + 1477
54 QtWidgets 0x000000010f2651df QAbstractButtonPrivate::emitClicked() + 111
55 QtWidgets 0x000000010f265059 QAbstractButtonPrivate::click() + 233
56 QtWidgets 0x000000010f26620f QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
57 QtWidgets 0x000000010f1b5dfd QWidget::event(QEvent*) + 445
58 QtWidgets 0x000000010f17b9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
59 QtWidgets 0x000000010f17e755 QApplication::notify(QObject*, QEvent*) + 6965
60 QtCore 0x0000000110042a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
61 QtWidgets 0x000000010f17c310 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
62 QtWidgets 0x000000010f1d5022 QWidgetWindow::handleMouseEvent(QMouseEvent*) + 3266
63 QtWidgets 0x000000010f1d36e9 QWidgetWindow::event(QEvent*) + 233
64 QtWidgets 0x000000010f17b9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
65 QtWidgets 0x000000010f17ce11 QApplication::notify(QObject*, QEvent*) + 497
66 QtCore 0x0000000110042a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
67 QtGui 0x000000010f7e8e2e QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3534
68 QtGui 0x000000010f7cdd7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
69 libqcocoa.dylib 0x00000001205b5260 QCocoaEventDispatcherPrivate::processPostedEvents() + 320
70 libqcocoa.dylib 0x00000001205b59c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
71 com.apple.CoreFoundation 0x00007fff39b8ad52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
72 com.apple.CoreFoundation 0x00007fff39b8acf1 __CFRunLoopDoSource0 + 103
73 com.apple.CoreFoundation 0x00007fff39b8ab0b __CFRunLoopDoSources0 + 209
74 com.apple.CoreFoundation 0x00007fff39b8983a __CFRunLoopRun + 927
75 com.apple.CoreFoundation 0x00007fff39b88e3e CFRunLoopRunSpecific + 462
76 com.apple.HIToolbox 0x00007fff387b5abd RunCurrentEventLoopInMode + 292
77 com.apple.HIToolbox 0x00007fff387b56f4 ReceiveNextEventCommon + 359
78 com.apple.HIToolbox 0x00007fff387b5579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
79 com.apple.AppKit 0x00007fff36dfb039 _DPSNextEvent + 883
80 com.apple.AppKit 0x00007fff36df9880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
81 com.apple.AppKit 0x00007fff36deb58e -[NSApplication run] + 658
82 libqcocoa.dylib 0x00000001205b462f QCocoaEventDispatcher::processEvents(QFlags) + 2495
83 QtCore 0x000000011003eacf QEventLoop::exec(QFlags) + 431
84 QtCore 0x0000000110043042 QCoreApplication::exec() + 130
85 QtWidgets.abi3.so 0x000000010e6da301 Sbk_QApplicationFunc_exec_(_object*) + 33
86 org.python.python 0x0000000100563b8f cfunction_vectorcall_NOARGS + 207
87 org.python.python 0x0000000100609cb2 call_function + 354
88 org.python.python 0x0000000100606a26 _PyEval_EvalFrameDefault + 28742
89 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
90 org.python.python 0x000000010052681b method_vectorcall + 171
91 org.python.python 0x0000000100609cb2 call_function + 354
92 org.python.python 0x0000000100606a26 _PyEval_EvalFrameDefault + 28742
93 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
94 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
95 org.python.python 0x0000000100609cb2 call_function + 354
96 org.python.python 0x0000000100606abc _PyEval_EvalFrameDefault + 28892
97 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
98 org.python.python 0x00000001005ff940 PyEval_EvalCode + 48
99 org.python.python 0x00000001005fcc95 builtin_exec + 661
100 org.python.python 0x0000000100563991 cfunction_vectorcall_FASTCALL + 177
101 org.python.python 0x0000000100609cb2 call_function + 354
102 org.python.python 0x0000000100606abc _PyEval_EvalFrameDefault + 28892
103 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
104 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
105 org.python.python 0x0000000100609cb2 call_function + 354
106 org.python.python 0x0000000100606abc _PyEval_EvalFrameDefault + 28892
107 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
108 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
109 org.python.python 0x000000010052368c PyVectorcall_Call + 108
110 org.python.python 0x0000000100672cb0 pymain_run_module + 192
111 org.python.python 0x000000010067224d Py_RunMain + 1373
112 org.python.python 0x0000000100672b7b pymain_main + 411
113 org.python.python 0x00000001006729cb Py_Main + 43
114 edu.ucsf.cgl.ChimeraX 0x00000001004f7dc8 main + 120
115 libdyld.dylib 0x00007fff73bf3cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff73d37882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff73df8425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000101e0f27b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff73d37882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff73df8425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000101e0f27b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff73d37882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff73df8425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x0000000101e0f27b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff39b8aef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff39b899c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff39b88e3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff36f9c954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 5:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff73d3db96 kevent64 + 10
1 QtWebEngineCore 0x00000001162c0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001162c0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116254a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 6:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011625e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011625f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011625ec44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff73d3db96 kevent64 + 10
1 QtWebEngineCore 0x00000001162c0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001162c0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011a18df06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 9:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011625e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011625f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011625ecd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 10:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011625e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011625f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011625ecd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 11:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff73d37882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff73df8425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001162ade18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001175655f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001161de20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff73d3db96 kevent64 + 10
1 QtWebEngineCore 0x00000001162c0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001162c0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 15:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 16:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011625e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011625f150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011625ed34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 19:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001161de1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011624962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011620d7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116268a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 20:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001162b62cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011625e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011625ee3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011625ec74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff73df3b68 start_wqthread + 0
Thread 22:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff73d34dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff73d35170 mach_msg + 60
2 QtWebEngineCore 0x00000001162b6492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011625e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011625ee3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x000000011625ec44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x00000001162b1e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff73df3b68 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff73df3b68 start_wqthread + 0
Thread 25:
0 libsystem_kernel.dylib 0x00007fff73d37882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff73df8425 _pthread_cond_wait + 698
2 org.python.python 0x00000001006605af PyThread_acquire_lock_timed + 351
3 org.python.python 0x00000001006b075f acquire_timed + 111
4 org.python.python 0x00000001006b04dc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010052cf2c method_vectorcall_VARARGS_KEYWORDS + 332
6 org.python.python 0x0000000100609cb2 call_function + 354
7 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
8 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
9 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
10 org.python.python 0x0000000100609cb2 call_function + 354
11 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
12 org.python.python 0x000000010060af1f _PyEval_EvalCodeWithName + 3711
13 org.python.python 0x0000000100523e43 _PyFunction_Vectorcall + 243
14 org.python.python 0x0000000100609cb2 call_function + 354
15 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
16 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
17 org.python.python 0x0000000100609cb2 call_function + 354
18 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
19 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
20 org.python.python 0x0000000100609cb2 call_function + 354
21 org.python.python 0x0000000100606a06 _PyEval_EvalFrameDefault + 28710
22 org.python.python 0x0000000100523cd1 function_code_fastcall + 177
23 org.python.python 0x00000001005268af method_vectorcall + 319
24 org.python.python 0x000000010052368c PyVectorcall_Call + 108
25 org.python.python 0x00000001006b10fa t_bootstrap + 74
26 org.python.python 0x00000001006601e9 pythread_wrapper + 25
27 libsystem_pthread.dylib 0x00007fff73df8109 _pthread_start + 148
28 libsystem_pthread.dylib 0x00007fff73df3b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010614fdc0 rcx: 0x00007ffe2258da58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007ffe2258da80 rsp: 0x00007ffe2258da58
r8: 0x00007ffe2258df48 r9: 0xc481a735f7964c76 r10: 0x000000010614fdc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000145cec6b0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff73d3b33a rfl: 0x0000000000000246 cr2: 0x0000700013342000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff4d9dc000 - 0x7fff4d9fefff com.apple.applesauce (1.0 - 16.25) /System/Library/PrivateFrameworks/AppleSauce.framework/Versions/A/AppleSauce
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0x7fff4e0ac000 - 0x7fff4e4a7ff8 com.apple.audio.AudioResourceArbitration (1.0 - 1) /System/Library/PrivateFrameworks/AudioResourceArbitration.framework/Versions/A/AudioResourceArbitration
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0x7fff717ef000 - 0x7fff717fafff libcsfde.dylib (551) /usr/lib/libcsfde.dylib
0x7fff71802000 - 0x7fff71861ff7 libcups.2.dylib (483.7) /usr/lib/libcups.2.dylib
0x7fff71863000 - 0x7fff718c8ff7 libcurl.4.dylib (118.120.2) /usr/lib/libcurl.4.dylib
0x7fff7196b000 - 0x7fff7196bfff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff7196c000 - 0x7fff71984fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib
0x7fff71992000 - 0x7fff71994fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff719a3000 - 0x7fff719a8fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff719a9000 - 0x7fff719b2ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib
0x7fff719b3000 - 0x7fff71aa3fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff71aa4000 - 0x7fff71cfbfff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff71d13000 - 0x7fff71d14fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff71d15000 - 0x7fff71d2dff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff71d45000 - 0x7fff71decff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff71ded000 - 0x7fff7204fff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff723bc000 - 0x7fff723ebfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff7251b000 - 0x7fff72997ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff72998000 - 0x7fff729affff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff72a38000 - 0x7fff72a6bfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff72a6c000 - 0x7fff72a6dff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff72a7e000 - 0x7fff72a82fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff72a85000 - 0x7fff72abbff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff72afb000 - 0x7fff72b09ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff72b0a000 - 0x7fff72b0dff3 libpmenergy.dylib (214.120.1) /usr/lib/libpmenergy.dylib
0x7fff72b0e000 - 0x7fff72b10fff libpmsample.dylib (214.120.1) /usr/lib/libpmsample.dylib
0x7fff72b3f000 - 0x7fff72b57fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff72b59000 - 0x7fff72b9dff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib
0x7fff72b9e000 - 0x7fff72bb0ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff72bb1000 - 0x7fff72bb2ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff72bb3000 - 0x7fff72d9dff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff72e91000 - 0x7fff72ebeffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff72f93000 - 0x7fff72fedff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff72fee000 - 0x7fff72ff1ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff72ff2000 - 0x7fff72fffff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff73005000 - 0x7fff730e7fff libxml2.2.dylib (33.7) /usr/lib/libxml2.2.dylib
0x7fff730eb000 - 0x7fff73113fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff73114000 - 0x7fff73126ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff739d5000 - 0x7fff739daff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff739db000 - 0x7fff739e6fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff739e7000 - 0x7fff739eefff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff739ef000 - 0x7fff739f8ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff739f9000 - 0x7fff73a8bfdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff73b98000 - 0x7fff73bd8ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff73bd9000 - 0x7fff73c0ffff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff73c10000 - 0x7fff73c10ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff73c11000 - 0x7fff73c1dff3 libkxld.dylib (6153.141.10) /usr/lib/system/libkxld.dylib
0x7fff73c1e000 - 0x7fff73c1eff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib
0x7fff73c1f000 - 0x7fff73c24ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff73c25000 - 0x7fff73c27ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff73c28000 - 0x7fff73c29ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff73c2a000 - 0x7fff73c41ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff73c42000 - 0x7fff73c42ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff73c43000 - 0x7fff73ccafff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff73ccb000 - 0x7fff73cceffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff73ccf000 - 0x7fff73cd2fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff73cd3000 - 0x7fff73cdbfff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff73cdc000 - 0x7fff73ce3fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff73ce4000 - 0x7fff73ce5ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff73ce6000 - 0x7fff73d33ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff73d34000 - 0x7fff73d60ff7 libsystem_kernel.dylib (6153.141.10) /usr/lib/system/libsystem_kernel.dylib
0x7fff73d61000 - 0x7fff73da8fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff73da9000 - 0x7fff73dd0fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff73dd1000 - 0x7fff73ddeffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff73ddf000 - 0x7fff73de8ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff73de9000 - 0x7fff73df1fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff73df2000 - 0x7fff73dfcfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff73dfd000 - 0x7fff73e01ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff73e02000 - 0x7fff73e04fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff73e05000 - 0x7fff73e0cffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff73e0d000 - 0x7fff73e23ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff73e25000 - 0x7fff73e2aff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff73e2b000 - 0x7fff73e60ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 4
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 214180
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 164K 14
CoreAnimation 200K 17
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 3276K 27
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 282.3M 345
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 32K 4
OpenGL GLSL 384K 5
STACK GUARD 100K 25
Stack 163.7M 26
Stack Guard 56.0M 1
VM_ALLOCATE 152.9M 667
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 51.3M 543
__DATA_CONST 40K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 482.1M 133
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 536.2M 508
__UNICODE 564K 1
mapped file 388.5M 56
shared memory 2972K 25
=========== ======= =======
TOTAL 2.5G 2426
TOTAL, minus reserved VM space 2.1G 2426
Log:
> open /Users/meng/Desktop/startup.cxc
> alias reset view orient; view initial
> alias start tool show $1
> alias whereprefs info path user unversioned config
> alias captut open help:user/tutorials/binding-sites.html#cap-example
> alias previewts toolshed url https://cxtoolshed-
> preview.rbvi.ucsf.edu;toolshed reload available
> alias normalts toolshed url https://cxtoolshed.rbvi.ucsf.edu;toolshed reload
> available
> alias btut open
> https://www.cgl.ucsf.edu/home/meng/chimerax/vdocs/user/tutorials/binding-
> sites.html
> alias stut open https://www.rbvi.ucsf.edu/chimerax/data/conservation-
> coloring/conservation-coloring.html
executed startup.cxc
UCSF ChimeraX version: 1.2.dev202101142201 (2021-01-14)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.11
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,4
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 425.0.0.0.0
SMC Version (system): 2.29f24
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H114)
Kernel Version: Darwin 19.6.0
Time since boot: 7:21
Graphics/Displays:
Intel Iris Pro:
Chipset Model: Intel Iris Pro
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0d26
Revision ID: 0x0008
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PySide2 version: 5.15.2
Qt version: 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.3.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.10.4
ChimeraX-AtomicLibrary: 1.1.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.dev202101142201
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.4
ChimeraX-PDB: 2.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.3
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.3.2
ChimeraX-uniprot: 2.1
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.0
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 1.1.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.2
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.8
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 20.3.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.10
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PySide2: 5.15.2
python-dateutil: 2.8.1
pytz: 2020.5
pyzmq: 21.0.0
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
shiboken2: 5.15.2
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.2.0
Change History (3)
comment:1 by , 5 years ago
| Platform: | → all |
|---|---|
| Project: | → ChimeraX |
comment:2 by , 5 years ago
| Component: | Unassigned → Structure Analysis |
|---|---|
| Owner: | set to |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash calculating H-bonds |
comment:3 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Recent changes to change notifications were buggy for pseudobonds and pseudobond groups.
Note:
See TracTickets
for help on using tickets.
I repeated the process at the next ChimeraX startup and had the same result, so it's at least semi-reproducible.