![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#4165 closed defect (can't reproduce)
Dual display crash
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [357]
Path: /Users/USER/Desktop/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [357]
User ID: 501
Date/Time: 2021-01-23 19:48:32.746 +0000
OS Version: Mac OS X 10.15.6 (19G2021)
Report Version: 12
Bridge OS Version: 4.6 (17P6610)
Anonymous UUID: 60CCD4E9-9B7F-356C-211E-645BA5F5DF02
Time Awake Since Boot: 1400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000028
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x28:
-->
__TEXT 0000000102828000-0000000102829000 [ 4K] r-x/r-x SM=COW /Users/USER/Desktop/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff727b433a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff72870e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff726cb93e raise + 26
3 libsystem_platform.dylib 0x00007fff728655fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libqcocoa.dylib 0x000000011637206b 0x11635a000 + 98411
6 libqcocoa.dylib 0x000000011637241f 0x11635a000 + 99359
7 com.apple.Foundation 0x00007fff3ac70784 -[__NSObserver _doit:] + 296
8 com.apple.CoreFoundation 0x00007fff385f780f __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
9 com.apple.CoreFoundation 0x00007fff385f77a3 ___CFXRegistrationPost1_block_invoke + 63
10 com.apple.CoreFoundation 0x00007fff385f7718 _CFXRegistrationPost1 + 372
11 com.apple.CoreFoundation 0x00007fff385f7384 ___CFXNotificationPost_block_invoke + 80
12 com.apple.CoreFoundation 0x00007fff385c74fd -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1554
13 com.apple.CoreFoundation 0x00007fff385c69a9 _CFXNotificationPost + 1351
14 com.apple.Foundation 0x00007fff3ac44786 -[NSNotificationCenter postNotificationName:object:userInfo:] + 59
15 com.apple.AppKit 0x00007fff361086d5 -[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:] + 192
16 com.apple.AppKit 0x00007fff35ae199b __67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke + 552
17 com.apple.AppKit 0x00007fff358ca36e NSPerformVisuallyAtomicChange + 132
18 com.apple.AppKit 0x00007fff35ae176d -[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:] + 69
19 com.apple.AppKit 0x00007fff358cb9a3 -[NSWindow _setFrameCommon:display:fromServer:] + 1398
20 libqcocoa.dylib 0x00000001163745e3 0x11635a000 + 108003
21 libqcocoa.dylib 0x00000001163741f2 0x11635a000 + 106994
22 QtGui 0x000000010be75731 QWindow::setGeometry(QRect const&) + 513
23 QtWidgets 0x000000010b8cb380 QWidgetPrivate::show_sys() + 816
24 QtWidgets 0x000000010b8cd3f5 QWidgetPrivate::show_helper() + 405
25 QtWidgets 0x000000010b8ce043 QWidgetPrivate::setVisible(bool) + 819
26 QtWidgets 0x000000010b8b7e34 QToolTip::showText(QPoint const&, QString const&, QWidget*, QRect const&, int) + 692
27 QtWidgets 0x000000010b8ceae0 QWidget::event(QEvent*) + 2272
28 QtWidgets 0x000000010ba7585f QToolButton::event(QEvent*) + 319
29 QtWidgets.so 0x000000010b33b8b0 sipQToolButton::event(QEvent*) + 192
30 QtWidgets 0x000000010b89267d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
31 QtWidgets 0x000000010b893ec4 QApplication::notify(QObject*, QEvent*) + 1684
32 QtWidgets.so 0x000000010b4523ca sipQApplication::notify(QObject*, QEvent*) + 234
33 QtCore 0x000000010c57e324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
34 QtWidgets 0x000000010b890f34 QApplication::event(QEvent*) + 948
35 QtWidgets.so 0x000000010b54168b meth_QApplication_event(_object*, _object*) + 139
36 org.python.python 0x0000000102859382 _PyMethodDef_RawFastCallKeywords + 226
37 org.python.python 0x00000001028588b9 _PyCFunction_FastCallKeywords + 41
38 org.python.python 0x000000010292db60 call_function + 656
39 org.python.python 0x000000010292a817 _PyEval_EvalFrameDefault + 26567
40 org.python.python 0x0000000102858d61 function_code_fastcall + 177
41 org.python.python 0x0000000102859873 _PyObject_Call_Prepend + 131
42 org.python.python 0x00000001028589d8 PyObject_Call + 136
43 sip.so 0x000000010e534f7a call_method + 76
44 sip.so 0x000000010e530c40 sip_api_call_method + 136
45 QtWidgets.so 0x000000010b45245b sipQApplication::event(QEvent*) + 123
46 QtWidgets 0x000000010b89267d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
47 QtWidgets 0x000000010b893a82 QApplication::notify(QObject*, QEvent*) + 594
48 QtWidgets.so 0x000000010b4523ca sipQApplication::notify(QObject*, QEvent*) + 234
49 QtCore 0x000000010c57e324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
50 QtCore 0x000000010c5d793f QTimerInfoList::activateTimers() + 991
51 libqcocoa.dylib 0x000000011638f032 0x11635a000 + 217138
52 com.apple.CoreFoundation 0x00007fff38601d52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
53 com.apple.CoreFoundation 0x00007fff38601cf1 __CFRunLoopDoSource0 + 103
54 com.apple.CoreFoundation 0x00007fff38601b0b __CFRunLoopDoSources0 + 209
55 com.apple.CoreFoundation 0x00007fff3860083a __CFRunLoopRun + 927
56 com.apple.CoreFoundation 0x00007fff385ffe3e CFRunLoopRunSpecific + 462
57 com.apple.HIToolbox 0x00007fff3722cabd RunCurrentEventLoopInMode + 292
58 com.apple.HIToolbox 0x00007fff3722c7d5 ReceiveNextEventCommon + 584
59 com.apple.HIToolbox 0x00007fff3722c579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
60 com.apple.AppKit 0x00007fff35872039 _DPSNextEvent + 883
61 com.apple.AppKit 0x00007fff35870880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
62 com.apple.AppKit 0x00007fff3586258e -[NSApplication run] + 658
63 libqcocoa.dylib 0x000000011638fde3 0x11635a000 + 220643
64 QtCore 0x000000010c57993f QEventLoop::exec(QFlags) + 431
65 QtCore 0x000000010c57e932 QCoreApplication::exec() + 130
66 QtWidgets.so 0x000000010b5417d2 meth_QApplication_exec_(_object*, _object*) + 82
67 org.python.python 0x0000000102859382 _PyMethodDef_RawFastCallKeywords + 226
68 org.python.python 0x00000001028588b9 _PyCFunction_FastCallKeywords + 41
69 org.python.python 0x000000010292db60 call_function + 656
70 org.python.python 0x000000010292a817 _PyEval_EvalFrameDefault + 26567
71 org.python.python 0x0000000102858d61 function_code_fastcall + 177
72 org.python.python 0x000000010292dbd4 call_function + 772
73 org.python.python 0x000000010292a817 _PyEval_EvalFrameDefault + 26567
74 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
75 org.python.python 0x0000000102858879 _PyFunction_FastCallKeywords + 217
76 org.python.python 0x000000010292dbd4 call_function + 772
77 org.python.python 0x000000010292a8ae _PyEval_EvalFrameDefault + 26718
78 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
79 org.python.python 0x0000000102923fb0 PyEval_EvalCode + 48
80 org.python.python 0x0000000102921547 builtin_exec + 583
81 org.python.python 0x000000010285952d _PyMethodDef_RawFastCallKeywords + 653
82 org.python.python 0x00000001028588b9 _PyCFunction_FastCallKeywords + 41
83 org.python.python 0x000000010292db60 call_function + 656
84 org.python.python 0x000000010292a8ae _PyEval_EvalFrameDefault + 26718
85 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
86 org.python.python 0x0000000102858879 _PyFunction_FastCallKeywords + 217
87 org.python.python 0x000000010292dbd4 call_function + 772
88 org.python.python 0x000000010292a8ae _PyEval_EvalFrameDefault + 26718
89 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
90 org.python.python 0x0000000102858377 _PyFunction_FastCallDict + 455
91 org.python.python 0x0000000102988af3 pymain_run_module + 147
92 org.python.python 0x0000000102987bdc pymain_main + 5900
93 org.python.python 0x00000001029864c3 Py_Main + 51
94 edu.ucsf.cgl.ChimeraX 0x0000000102828dc8 main + 120
95 libdyld.dylib 0x00007fff7266ccc9 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff38601ef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff386009c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff385ffe3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff35a13954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110ef505d 0x10ed9f000 + 34955357
5 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff727b2766 kevent + 10
1 QtWebEngineCore 0x00000001112029a9 0x10ed9f000 + 38156713
2 QtWebEngineCore 0x00000001111ffcbd 0x10ed9f000 + 38145213
3 QtWebEngineCore 0x0000000110fb6cdc 0x10ed9f000 + 35749084
4 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
5 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
6 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
7 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff727b2766 kevent + 10
1 QtWebEngineCore 0x00000001112029a9 0x10ed9f000 + 38156713
2 QtWebEngineCore 0x00000001111ffcbd 0x10ed9f000 + 38145213
3 QtWebEngineCore 0x0000000110fb6cc4 0x10ed9f000 + 35749060
4 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
5 QtWebEngineCore 0x0000000110f5fa74 0x10ed9f000 + 35392116
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 5:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f41421 0x10ed9f000 + 35267617
4 QtWebEngineCore 0x0000000110f58d28 0x10ed9f000 + 35364136
5 QtWebEngineCore 0x0000000110f5965b 0x10ed9f000 + 35366491
6 QtWebEngineCore 0x0000000110f592c4 0x10ed9f000 + 35365572
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 6:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f41421 0x10ed9f000 + 35267617
4 QtWebEngineCore 0x0000000110f58d28 0x10ed9f000 + 35364136
5 QtWebEngineCore 0x0000000110f5965b 0x10ed9f000 + 35366491
6 QtWebEngineCore 0x0000000110f59234 0x10ed9f000 + 35365428
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 7:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f41421 0x10ed9f000 + 35267617
4 QtWebEngineCore 0x0000000110f58d28 0x10ed9f000 + 35364136
5 QtWebEngineCore 0x0000000110f5965b 0x10ed9f000 + 35366491
6 QtWebEngineCore 0x0000000110f59234 0x10ed9f000 + 35365428
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 8:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff727b2766 kevent + 10
1 QtWebEngineCore 0x00000001112029a9 0x10ed9f000 + 38156713
2 QtWebEngineCore 0x00000001111ffcbd 0x10ed9f000 + 38145213
3 QtWebEngineCore 0x0000000110fb6cc4 0x10ed9f000 + 35749060
4 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
5 QtWebEngineCore 0x000000011088cfe4 0x10ed9f000 + 28237796
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 9:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110f58d1a 0x10ed9f000 + 35364122
5 QtWebEngineCore 0x0000000110f593bf 0x10ed9f000 + 35365823
6 QtWebEngineCore 0x0000000110f59264 0x10ed9f000 + 35365476
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 10:: CompositorTileWorker1/74755
0 libsystem_kernel.dylib 0x00007fff727b0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff72871425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000110faefa8 0x10ed9f000 + 35717032
3 QtWebEngineCore 0x0000000111f354c8 0x10ed9f000 + 51995848
4 QtWebEngineCore 0x0000000110f6f694 0x10ed9f000 + 35456660
5 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
6 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 11:: AudioThread
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110ef505d 0x10ed9f000 + 34955357
5 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110ef5052 0x10ed9f000 + 34955346
4 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
5 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
6 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
7 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff727b2766 kevent + 10
1 QtWebEngineCore 0x00000001112029a9 0x10ed9f000 + 38156713
2 QtWebEngineCore 0x00000001111ffcbd 0x10ed9f000 + 38145213
3 QtWebEngineCore 0x0000000110fb6cdc 0x10ed9f000 + 35749084
4 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
5 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
6 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
7 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110ef505d 0x10ed9f000 + 34955357
5 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 15:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110f58d1a 0x10ed9f000 + 35364122
5 QtWebEngineCore 0x0000000110f5965b 0x10ed9f000 + 35366491
6 QtWebEngineCore 0x0000000110f59324 0x10ed9f000 + 35365668
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f4122f 0x10ed9f000 + 35267119
4 QtWebEngineCore 0x0000000110ef505d 0x10ed9f000 + 34955357
5 QtWebEngineCore 0x0000000110f1e085 0x10ed9f000 + 35123333
6 QtWebEngineCore 0x0000000110f709bc 0x10ed9f000 + 35461564
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff727b0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff72871425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010538ac3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 18:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f41421 0x10ed9f000 + 35267617
4 QtWebEngineCore 0x0000000110f58d28 0x10ed9f000 + 35364136
5 QtWebEngineCore 0x0000000110f5965b 0x10ed9f000 + 35366491
6 QtWebEngineCore 0x0000000110f592c4 0x10ed9f000 + 35365572
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 19:
0 libsystem_pthread.dylib 0x00007fff7286cb68 start_wqthread + 0
Thread 20:
0 libsystem_pthread.dylib 0x00007fff7286cb68 start_wqthread + 0
Thread 21:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff727addfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff727ae170 mach_msg + 60
2 QtWebEngineCore 0x0000000110f4132d 0x10ed9f000 + 35267373
3 QtWebEngineCore 0x0000000110f41421 0x10ed9f000 + 35267617
4 QtWebEngineCore 0x0000000110f58d28 0x10ed9f000 + 35364136
5 QtWebEngineCore 0x0000000110f593bf 0x10ed9f000 + 35365823
6 QtWebEngineCore 0x0000000110f592c4 0x10ed9f000 + 35365572
7 QtWebEngineCore 0x0000000110fb0717 0x10ed9f000 + 35723031
8 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff7286cb68 start_wqthread + 0
Thread 23:
0 libsystem_kernel.dylib 0x00007fff727b0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff72871425 _pthread_cond_wait + 698
2 org.python.python 0x00000001029720af PyThread_acquire_lock_timed + 351
3 org.python.python 0x00000001029bd9df acquire_timed + 111
4 org.python.python 0x00000001029bd75c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010285956a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x000000010285f571 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x000000010292dbfe call_function + 814
8 org.python.python 0x000000010292a7fa _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000102858879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x000000010292dbd4 call_function + 772
12 org.python.python 0x000000010292a7fa _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x000000010292ea2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000102858879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x000000010292dbd4 call_function + 772
16 org.python.python 0x000000010292a7fa _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000102858d61 function_code_fastcall + 177
18 org.python.python 0x000000010292dbd4 call_function + 772
19 org.python.python 0x000000010292a7fa _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000102858d61 function_code_fastcall + 177
21 org.python.python 0x000000010292dbd4 call_function + 772
22 org.python.python 0x000000010292a7fa _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000102858d61 function_code_fastcall + 177
24 org.python.python 0x0000000102859873 _PyObject_Call_Prepend + 131
25 org.python.python 0x00000001028589d8 PyObject_Call + 136
26 org.python.python 0x00000001029be287 t_bootstrap + 71
27 org.python.python 0x0000000102971d19 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff72871109 _pthread_start + 148
29 libsystem_pthread.dylib 0x00007fff7286cb8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000105019dc0 rcx: 0x00007fa154f77a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fa154f77a80 rsp: 0x00007fa154f77a58
r8: 0x00007fa154f77f48 r9: 0x0e242a2bec3eca98 r10: 0x0000000105019dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00006000028b0420 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff727b433a rfl: 0x0000000000000246 cr2: 0x0000000102a93fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff70420000 - 0x7fff70429ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib
0x7fff7042a000 - 0x7fff7051afff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff7051b000 - 0x7fff70772fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff7078c000 - 0x7fff7078dfff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff7078e000 - 0x7fff707a6ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff707be000 - 0x7fff70865ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff70866000 - 0x7fff70ac8ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff70e35000 - 0x7fff70e64fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff70f94000 - 0x7fff71410ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff71411000 - 0x7fff71428fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff714b1000 - 0x7fff714e4fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff714e5000 - 0x7fff714e6ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff714f7000 - 0x7fff714fbfff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff714fe000 - 0x7fff71534ff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff71574000 - 0x7fff71582ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff715b8000 - 0x7fff715d0fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff715d2000 - 0x7fff71616ff7 libsandbox.1.dylib (1217.141.1) /usr/lib/libsandbox.1.dylib
0x7fff71617000 - 0x7fff71629ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff7162a000 - 0x7fff7162bff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff7162c000 - 0x7fff71816ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff7190a000 - 0x7fff71937ffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff71a0c000 - 0x7fff71a66ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff71a67000 - 0x7fff71a6affb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff71a6b000 - 0x7fff71a78ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff71a7e000 - 0x7fff71b60ff7 libxml2.2.dylib (33.4) /usr/lib/libxml2.2.dylib
0x7fff71b64000 - 0x7fff71b8cfff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff71b8d000 - 0x7fff71b9fff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff7244e000 - 0x7fff72453ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff72454000 - 0x7fff7245ffff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff72460000 - 0x7fff72467fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff72468000 - 0x7fff72471ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff72472000 - 0x7fff72504fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff72611000 - 0x7fff72651ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff72652000 - 0x7fff72688fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff72689000 - 0x7fff72689ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff7268a000 - 0x7fff72696ff3 libkxld.dylib (6153.141.1) /usr/lib/system/libkxld.dylib
0x7fff72697000 - 0x7fff72697ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff72698000 - 0x7fff7269dff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff7269e000 - 0x7fff726a0ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff726a1000 - 0x7fff726a2ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff726a3000 - 0x7fff726baff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff726bb000 - 0x7fff726bbff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff726bc000 - 0x7fff72743fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff72744000 - 0x7fff72747ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff72748000 - 0x7fff7274bfff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff7274c000 - 0x7fff72754fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff72755000 - 0x7fff7275cfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff7275d000 - 0x7fff7275effb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff7275f000 - 0x7fff727acff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff727ad000 - 0x7fff727d9ff7 libsystem_kernel.dylib (6153.141.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff727da000 - 0x7fff72821fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff72822000 - 0x7fff72849fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff7284a000 - 0x7fff72857ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff72858000 - 0x7fff72861ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff72862000 - 0x7fff7286afef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff7286b000 - 0x7fff72875fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff72876000 - 0x7fff7287aff3 libsystem_sandbox.dylib (1217.141.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff7287b000 - 0x7fff7287dfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff7287e000 - 0x7fff72885ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff72886000 - 0x7fff7289cff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff7289e000 - 0x7fff728a3ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff728a4000 - 0x7fff728d9ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 785
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=939.9M resident=0K(0%) swapped_out_or_unallocated=939.9M(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 1328K 4
CG image 440K 43
CoreAnimation 652K 82
CoreGraphics 8K 1
CoreImage 32K 4
CoreUI image data 4036K 42
Foundation 28K 2
Kernel Alloc Once 8K 1
MALLOC 594.3M 472
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 92K 23
Stack 151.7M 24
Stack Guard 56.0M 1
VM_ALLOCATE 201.4M 398
__DATA 51.6M 544
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 413.3M 140
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 526.5M 510
__UNICODE 564K 1
mapped file 92.5M 58
shared memory 668K 21
=========== ======= =======
TOTAL 2.2G 2403
TOTAL, minus reserved VM space 2.1G 2403
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "/Users/roy/COX-2 Struc/cox-2 Vioxx .cxs"
Log from Sat Jan 23 13:32:57 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "/Users/roy/COX-2 Struc/cox-2 model 1.cxs"
Log from Sat Jan 23 12:34:12 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 5kir format mmcif fromDatabase pdb
5kir title:
The Structure of Vioxx Bound to Human COX-2 [more info...]
Chain information for 5kir #1
---
Chain | Description
A B | Prostaglandin G/H synthase 2
Non-standard residues in 5kir #1
---
COH — protoporphyrin IX containing Co
GOL — glycerol (glycerin; propane-1,2,3-triol)
MAN — alpha-D-mannopyranose
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose
NH4 — ammonium ion
PO4 — phosphate ion
RCX — Rofecoxib (Vioxx)
Alignment identifier is 1
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> style : rcx sphere
Changed 44 atom styles
> style sel stick
Changed 44 atom styles
> ui mousemode right select
> select /B:602@CO
1 atom, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> style stick
Changed 18167 atom styles
> style ball
Changed 18167 atom styles
> style stick
Changed 18167 atom styles
> preset original
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> color list
No custom colors.
248 builtin colors: alice blue
, aliceblue
, antique white
, antiquewhite
, aqua
, aquamarine
, azure
, beige
, bisque
, black
, blanched almond
, blanchedalmond
, blue
, blue violet
, blueviolet
, brown
, burly wood
, burlywood
, cadet blue
, cadetblue
, chartreuse
, chocolate
, coral
, cornflower blue
, cornflowerblue
, cornsilk
, crimson
, cyan
, dark blue
, dark cyan
, dark goldenrod
, dark gray
, dark green
, dark grey
, dark khaki
, dark magenta
, dark olive green
, dark orange
, dark orchid
, dark red
, dark salmon
, dark sea green
, dark seagreen
, dark slate blue
, dark slate gray
, dark slate grey
, dark turquoise
, dark violet
, darkblue
, darkcyan
, darkgoldenrod
, darkgray
, darkgreen
, darkgrey
, darkkhaki
, darkmagenta
, darkolivegreen
, darkorange
, darkorchid
, darkred
, darksalmon
, darkseagreen
, darkslateblue
, darkslategray
, darkslategrey
, darkturquoise
, darkviolet
, deep pink
, deep sky blue
, deep skyblue
, deeppink
, deepskyblue
, dim gray
, dim grey
, dimgray
, dimgrey
, dodger blue
, dodgerblue
, fire brick
, firebrick
, floral white
, floralwhite
, forest green
, forestgreen
, fuchsia
, gainsboro
, ghost white
, ghostwhite
, gold
, goldenrod
, gray
, green
, green yellow
, greenyellow
, grey
, honeydew
, hot pink
, hotpink
, indian red
, indianred
, indigo
, ivory
, khaki
, lavender
, lavender blush
, lavenderblush
, lawn green
, lawngreen
, lemon chiffon
, lemonchiffon
, light blue
, light coral
, light cyan
, light goldenrod yellow
, light gray
, light green
, light grey
, light pink
, light salmon
, light sea green
, light seagreen
, light sky blue
, light skyblue
, light slate gray
, light slate grey
, light steel blue
, light yellow
, lightblue
, lightcoral
, lightcyan
, lightgoldenrodyellow
, lightgray
, lightgreen
, lightgrey
, lightpink
, lightsalmon
, lightseagreen
, lightskyblue
, lightslategray
, lightslategrey
, lightsteelblue
, lightyellow
, lime
, lime green
, limegreen
, linen
, magenta
, maroon
, medium aquamarine
, medium blue
, medium orchid
, medium purple
, medium sea green
, medium seagreen
, medium slate blue
, medium spring green
, medium turquoise
, medium violet red
, mediumaquamarine
, mediumblue
, mediumorchid
, mediumpurple
, mediumseagreen
, mediumslateblue
, mediumspringgreen
, mediumturquoise
, mediumvioletred
, midnight blue
, midnightblue
, mint cream
, mintcream
, misty rose
, mistyrose
, moccasin
, navajo white
, navajowhite
, navy
, old lace
, oldlace
, olive
, olive drab
, olivedrab
, orange
, orange red
, orangered
, orchid
, pale goldenrod
, pale green
, pale turquoise
, pale violet red
, palegoldenrod
, palegreen
, paleturquoise
, palevioletred
, papaya whip
, papayawhip
, peach puff
, peachpuff
, peru
, pink
, plum
, powder blue
, powderblue
, purple
, rebecca purple
, rebeccapurple
, red
, rosy brown
, rosybrown
, royal blue
, royalblue
, saddle brown
, saddlebrown
, salmon
, sandy brown
, sandybrown
, sea green
, seagreen
, seashell
, sienna
, silver
, sky blue
, skyblue
, slate blue
, slate gray
, slate grey
, slateblue
, slategray
, slategrey
, snow
, spring green
, springgreen
, steel blue
, steelblue
, tan
, teal
, thistle
, tomato
, transparent
, turquoise
, violet
, wheat
, white
, white smoke
, whitesmoke
, yellow
, yellow green
, and yellowgreen
.
> color sel red\
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword
> color sel red
> select clear
> select /B:601@C16
1 atom, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> color sel red
> select clear
> view sel
No objects specified.
> hide ~sel
> view sel
No objects specified.
> view ~sel
> show ~sel
> \
Unknown command: \
> preset original
Preset implemented in Python; no expansion to individual ChimeraX commands
available.
> select /B:602@CO
1 atom, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> color sel red
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :MAN
42 atoms, 42 bonds, 2 residues, 1 model selected
> hide ~sel
> show ~sel
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> select :NH4
10 atoms, 8 bonds, 2 residues, 1 model selected
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> select :PO4
30 atoms, 24 bonds, 6 residues, 1 model selected
> hide sel
> ui mousemode right rotate
> close
> open 5kir format mmcif fromDatabase pdb
5kir title:
The Structure of Vioxx Bound to Human COX-2 [more info...]
Chain information for 5kir #1
---
Chain | Description
A B | Prostaglandin G/H synthase 2
Non-standard residues in 5kir #1
---
COH — protoporphyrin IX containing Co
GOL — glycerol (glycerin; propane-1,2,3-triol)
MAN — alpha-D-mannopyranose
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose
NH4 — ammonium ion
PO4 — phosphate ion
RCX — Rofecoxib (Vioxx)
> select :GOL
14 atoms, 13 bonds, 1 residue, 1 model selected
> hide sel
> select :NH4
10 atoms, 8 bonds, 2 residues, 1 model selected
> hide sel
> select :PO4
30 atoms, 24 bonds, 6 residues, 1 model selected
> hide sel
> select :GOL
14 atoms, 13 bonds, 1 residue, 1 model selected
> select :MAN
42 atoms, 42 bonds, 2 residues, 1 model selected
> hide sel
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> select :PO4
30 atoms, 24 bonds, 6 residues, 1 model selected
> select :NH4
10 atoms, 8 bonds, 2 residues, 1 model selected
> select :NAG
168 atoms, 170 bonds, 6 residues, 1 model selected
> hide sel
> select :MAN
42 atoms, 42 bonds, 2 residues, 1 model selected
> select :GOL
14 atoms, 13 bonds, 1 residue, 1 model selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> label @@display
> ui mousemode right select
> select /A:601@C16
1 atom, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> color sel red
> select /A:602@C4A
1 atom, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> color sel red
> select clear
> hide solvent
> hbonds :sti reveal true log true
Atom specifier selects no atoms
> hbonds :rcx reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 5kir
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A ARG 513 NH1 /A RCX 601 O21 /A ARG 513 HH11 3.310 2.458
/B ARG 513 NH1 /B RCX 601 O21 /B ARG 513 HH11 3.221 2.378
2 hydrogen bonds found
> hbonds :rcx reveal false log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 5kir
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A ARG 513 NH1 /A RCX 601 O21 /A ARG 513 HH11 3.310 2.458
/B ARG 513 NH1 /B RCX 601 O21 /B ARG 513 HH11 3.221 2.378
2 hydrogen bonds found
> cartoon suppressBackboneDisplay false
> cartoon suppressBackboneDisplay false
> cartoon suppressBackboneDisplay true
Drag select of 3 residues
> select clear
Drag select of 1 atoms, 3 residues
> select clear
> ui mousemode right translate
> select clear
> rainbow
> rainbow
> clear
Unknown command: clear
> clear
Unknown command: clear
> style stick
Changed 18167 atom styles
> style stick
Changed 18167 atom styles
> style sphere
Changed 18167 atom styles
> style stick
Changed 18167 atom styles
> style ball
Changed 18167 atom styles
> style stick
Changed 18167 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> style stick
Changed 18167 atom styles
> show cartoons
> show cartoons
> show cartoons
> show atoms
> hide atoms
> show atoms
> hide cartoons
> show cartoons
> hide cartoons
> hide atoms
> show atoms
> hide atoms
> show cartoons
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> view sel
> view ~sel
> show ~sel
> hide ~sel
> show sel
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> show sel
> ui mousemode right select
> select /A:310
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
437 atoms, 442 bonds, 26 residues, 1 model selected
> select up
9036 atoms, 9090 bonds, 643 residues, 1 model selected
> select up
18167 atoms, 18296 bonds, 1277 residues, 1 model selected
> color sel white
> select clear
> color sel yellow
> select /A:420
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
308 atoms, 310 bonds, 19 residues, 1 model selected
> select up
9036 atoms, 9090 bonds, 643 residues, 1 model selected
> select up
18167 atoms, 18296 bonds, 1277 residues, 1 model selected
> color sel yellow
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> color sel red
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> color sel red
> select clear
Alignment identifier is 1
> color sel orange
> select clear
> color sel brown
> color sel blue
> select clear
> select clear
> set bgColor grey
> set bgColor white
> set bgColor grey
> select clear
> hide sel
> select /A:602@HBC1
1 atom, 1 residue, 1 model selected
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select /B:556
20 atoms, 20 bonds, 1 residue, 1 model selected
> select /A:601@C16
1 atom, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel atoms
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel atoms
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> show sel atoms
> select clear
> select /B:602@C2A
1 atom, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /B:601@C2
1 atom, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> hide sel atoms
> rainbow sel
Empty filename passed to function
> save "/Users/roy/COX-2 Struc/cox-2 model 1.cxs"
opened ChimeraX session
> close
> open 5kir format mmcif fromDatabase pdb
5kir title:
The Structure of Vioxx Bound to Human COX-2 [more info...]
Chain information for 5kir #1
---
Chain | Description
A B | Prostaglandin G/H synthase 2
Non-standard residues in 5kir #1
---
COH — protoporphyrin IX containing Co
GOL — glycerol (glycerin; propane-1,2,3-triol)
MAN — alpha-D-mannopyranose
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose
NH4 — ammonium ion
PO4 — phosphate ion
RCX — Rofecoxib (Vioxx)
> select :GOL
14 atoms, 13 bonds, 1 residue, 1 model selected
> hide sel atoms
> select :MAN
42 atoms, 42 bonds, 2 residues, 1 model selected
> hide sel atoms
> select :NH4
10 atoms, 8 bonds, 2 residues, 1 model selected
> hide sel atoms
> select :PO4
30 atoms, 24 bonds, 6 residues, 1 model selected
> hide sel atoms
> hide sel
> hide ~sel
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> show sel
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> show sel
> color sel red
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> color sel red
> label @@display
> ui mousemode right select
> select clear
> cartoon suppressBackboneDisplay false
> hide solvent
> hbonds :sti reveal true log true
Atom specifier selects no atoms
> hbonds :rcx reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 5kir
2 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A ARG 513 NH1 /A RCX 601 O21 /A ARG 513 HH11 3.310 2.458
/B ARG 513 NH1 /B RCX 601 O21 /B ARG 513 HH11 3.221 2.378
2 hydrogen bonds found
> cartoon suppressBackboneDisplay false
> label @@display
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> select down
2 atoms, 1 bond, 1 residue, 1 model selected
> select down
1 bond, 1 model selected
> select clear
> contacts :sti makePseudobonds false reveal true log true
No atoms match given atom specifier
> contacts :rcx makePseudobonds false reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
171 contacts
atom1 atom2 overlap distance
/B RCX 601 C22 /B PHE 518 H 0.422 2.458
/A RCX 601 C22 /A PHE 518 H 0.403 2.477
/A RCX 601 C22 /A PHE 518 HB2 0.355 2.525
/B RCX 601 C22 /B PHE 518 HB2 0.339 2.541
/B RCX 601 C15 /B LEU 352 O 0.335 2.905
/A RCX 601 C18 /A VAL 523 CG1 0.317 3.143
/A RCX 601 C22 /A PHE 518 N 0.284 3.221
/B RCX 601 C22 /B PHE 518 N 0.267 3.238
/B RCX 601 C18 /B VAL 523 CG1 0.238 3.222
/A RCX 601 C22 /A PHE 518 CB 0.232 3.348
/A RCX 601 C15 /A LEU 352 O 0.225 3.015
/B RCX 601 C22 /B PHE 518 CB 0.216 3.364
/A RCX 601 C18 /A VAL 523 HG13 0.214 2.546
/B RCX 601 C15 /B LEU 352 C 0.203 3.257
/B RCX 601 C17 /B VAL 523 CG2 0.190 3.270
/B RCX 601 C15 /B SER 353 HA 0.161 2.599
/A RCX 601 C22 /A ALA 516 HB1 0.157 2.723
/B RCX 601 C18 /B VAL 523 HG13 0.150 2.610
/A RCX 601 O21 /A HIS 90 CE1 0.142 3.058
/A RCX 601 C15 /A LEU 352 C 0.117 3.343
/A RCX 601 C17 /A VAL 523 CG1 0.080 3.380
/B RCX 601 C16 /B VAL 523 CG2 0.053 3.347
/B RCX 601 C9 /B GLY 526 HA3 0.050 2.710
/B RCX 601 C15 /B SER 353 CA 0.041 3.419
/A RCX 601 C11 /A SER 530 OG 0.038 3.222
/A RCX 601 C4 /A ALA 527 CB 0.036 3.364
/B RCX 601 C4 /B VAL 349 CG1 0.034 3.366
/B RCX 601 C14 /B SER 353 HA 0.029 2.731
/A RCX 601 O6 /A ALA 527 HA 0.025 2.435
/B RCX 601 O20 /B SER 353 O 0.021 2.959
/B RCX 601 C14 /B SER 353 CA 0.018 3.442
/B RCX 601 C22 /B ALA 516 HB1 0.004 2.876
/A RCX 601 C14 /A LEU 352 HB3 -0.003 2.763
/B RCX 601 C17 /B VAL 523 HG21 -0.006 2.766
/B RCX 601 C17 /B VAL 523 CG1 -0.008 3.468
/B RCX 601 C16 /B SER 353 HA -0.013 2.713
/A RCX 601 C4 /A VAL 349 CG1 -0.021 3.421
/B RCX 601 C14 /B SER 353 N -0.030 3.415
/B RCX 601 C14 /B LEU 352 C -0.032 3.492
/A RCX 601 O20 /A SER 353 O -0.033 3.013
/B RCX 601 O21 /B ARG 513 CD -0.036 3.236
/B RCX 601 C22 /B ILE 517 CG2 -0.051 3.631
/A RCX 601 O21 /A ARG 513 CD -0.051 3.251
/B RCX 601 O21 /B ARG 513 HD2 -0.053 2.553
/A RCX 601 C17 /A SER 353 HA -0.061 2.821
/A RCX 601 C18 /A SER 353 HA -0.062 2.822
/B RCX 601 C14 /B LEU 352 HB3 -0.069 2.829
/A RCX 601 C15 /A SER 353 HA -0.071 2.831
/A RCX 601 C14 /A SER 353 HA -0.082 2.842
/B RCX 601 O5 /B VAL 349 CG1 -0.092 3.272
/B RCX 601 C8 /B VAL 523 HA -0.098 2.858
/A RCX 601 O6 /A ALA 527 CA -0.099 3.259
/A RCX 601 C18 /A TYR 355 OH -0.101 3.361
/B RCX 601 C22 /B PHE 518 CD2 -0.104 3.684
/A RCX 601 C22 /A ALA 516 CB -0.104 3.684
/B RCX 601 C22 /B ILE 517 HG22 -0.107 2.987
/A RCX 601 C22 /A ILE 517 HG22 -0.108 2.988
/A RCX 601 O20 /A GLN 192 OE1 -0.111 3.091
/B RCX 601 C9 /B GLY 526 CA -0.112 3.572
/A RCX 601 C18 /A VAL 523 HG11 -0.117 2.877
/A RCX 601 C17 /A VAL 523 HG11 -0.117 2.877
/A RCX 601 C16 /A SER 353 HA -0.123 2.823
/A RCX 601 C22 /A PHE 518 CA -0.126 3.706
/A RCX 601 C14 /A SER 353 CA -0.129 3.589
/A RCX 601 C14 /A LEU 352 C -0.130 3.590
/A RCX 601 C22 /A GLN 192 OE1 -0.133 3.493
/B RCX 601 C15 /B SER 353 N -0.134 3.519
/A RCX 601 C13 /A SER 353 HA -0.140 2.840
/B RCX 601 C4 /B VAL 349 HG13 -0.141 2.841
/B RCX 601 C22 /B PHE 518 CA -0.142 3.722
/A RCX 601 C22 /A ILE 517 CG2 -0.148 3.728
/A RCX 601 C15 /A SER 353 CA -0.154 3.614
/A RCX 601 C14 /A SER 353 N -0.155 3.540
/B RCX 601 O6 /B ALA 527 HA -0.155 2.615
/A RCX 601 O20 /A HIS 90 HE1 -0.157 2.657
/A RCX 601 C16 /A VAL 523 CG2 -0.161 3.561
/B RCX 601 C4 /B ALA 527 CB -0.168 3.568
/A RCX 601 C17 /A VAL 523 CG2 -0.169 3.629
/A RCX 601 C13 /A VAL 523 HG13 -0.171 2.871
/B RCX 601 C16 /B VAL 523 HG22 -0.178 2.878
/B RCX 601 C8 /B ALA 527 N -0.183 3.568
/B RCX 601 C17 /B SER 353 HA -0.184 2.944
/B RCX 601 C17 /B VAL 523 HG22 -0.189 2.949
/B RCX 601 C11 /B SER 530 OG -0.196 3.456
/A RCX 601 O20 /A HIS 90 CE1 -0.203 3.403
/A RCX 601 O21 /A ARG 513 HD2 -0.203 2.703
/A RCX 601 O20 /A LEU 352 O -0.210 3.190
/A RCX 601 C22 /A PHE 518 CD2 -0.211 3.791
/B RCX 601 O20 /B GLN 192 OE1 -0.212 3.192
/B RCX 601 C18 /B TYR 355 OH -0.221 3.481
/A RCX 601 C14 /A LEU 352 CB -0.222 3.682
/B RCX 601 C9 /B MET 522 O -0.223 3.463
/B RCX 601 C18 /B VAL 523 HG11 -0.225 2.985
/A RCX 601 C12 /A SER 530 OG -0.226 3.486
/B RCX 601 O21 /B HIS 90 CD2 -0.228 3.428
/A RCX 601 O5 /A VAL 349 CG1 -0.229 3.409
/A RCX 601 C4 /A VAL 349 HG13 -0.230 2.930
/B RCX 601 C16 /B VAL 523 HG21 -0.231 2.931
/A RCX 601 C9 /A GLY 526 HA3 -0.233 2.993
/A RCX 601 C10 /A TRP 387 CZ2 -0.233 3.693
/A RCX 601 C8 /A VAL 523 HA -0.239 2.999
/B RCX 601 C17 /B VAL 523 HG11 -0.243 3.003
/B RCX 601 C14 /B LEU 352 CB -0.243 3.703
/B RCX 601 C22 /B PHE 518 HD2 -0.244 3.124
/B RCX 601 C10 /B TRP 387 HZ2 -0.248 3.008
/B RCX 601 C16 /B SER 353 CA -0.252 3.652
/A RCX 601 C13 /A SER 353 CA -0.256 3.656
/B RCX 601 C3 /B VAL 349 CG1 -0.260 3.720
/B RCX 601 C22 /B ALA 516 CB -0.260 3.840
/B RCX 601 C13 /B SER 353 HA -0.263 2.963
/A RCX 601 C15 /A SER 353 N -0.263 3.648
/B RCX 601 O20 /B LEU 352 O -0.264 3.244
/A RCX 601 C1 /A ALA 527 CB -0.266 3.666
/A RCX 601 C1 /A ALA 527 HB2 -0.267 2.967
/A RCX 601 C4 /A ALA 527 HB2 -0.268 2.968
/A RCX 601 C22 /A PHE 518 CG -0.272 3.852
/A RCX 601 C10 /A TRP 387 HZ2 -0.272 3.032
/B RCX 601 C22 /B ILE 517 H -0.273 3.153
/A RCX 601 C4 /A ALA 527 CA -0.274 3.674
/A RCX 601 C17 /A VAL 523 HG13 -0.275 3.035
/A RCX 601 O6 /A ALA 527 CB -0.276 3.436
/B RCX 601 O6 /B ALA 527 CA -0.277 3.437
/A RCX 601 C18 /A SER 353 CA -0.277 3.737
/B RCX 601 O21 /B ARG 513 HH11 -0.278 2.378
/A RCX 601 S19 /A HIS 90 CE1 -0.285 3.767
/B RCX 601 C22 /B PHE 518 CG -0.288 3.868
/A RCX 601 C8 /A ALA 527 N -0.291 3.676
/B RCX 601 C18 /B VAL 523 CG2 -0.295 3.755
/A RCX 601 C16 /A LEU 352 O -0.296 3.476
/B RCX 601 C18 /B SER 353 HA -0.296 3.056
/B RCX 601 C9 /B VAL 523 HA -0.300 3.060
/A RCX 601 C10 /A TRP 387 CH2 -0.301 3.761
/B RCX 601 C13 /B SER 353 CA -0.302 3.702
/B RCX 601 C10 /B TRP 387 CZ2 -0.302 3.762
/A RCX 601 C16 /A SER 353 CA -0.307 3.707
/B RCX 601 C9 /B GLY 526 C -0.308 3.768
/A RCX 601 C17 /A SER 353 CA -0.310 3.770
/A RCX 601 C4 /A ALA 527 HA -0.312 3.012
/B RCX 601 O21 /B HIS 90 NE2 -0.322 3.047
/A RCX 601 C15 /A LEU 352 HB3 -0.324 3.084
/A RCX 601 O21 /A VAL 523 HG21 -0.327 2.827
/A RCX 601 O6 /A LEU 531 HG -0.331 2.791
/A RCX 601 C13 /A VAL 523 CG1 -0.332 3.732
/B RCX 601 C4 /B VAL 349 HG11 -0.332 3.032
/B RCX 601 C8 /B VAL 523 CA -0.337 3.797
/B RCX 601 O21 /B VAL 523 HG21 -0.340 2.840
/A RCX 601 C22 /A ILE 517 N -0.342 3.847
/B RCX 601 S19 /B HIS 90 NE2 -0.344 3.751
/A RCX 601 C16 /A VAL 523 HG22 -0.346 3.046
/B RCX 601 C22 /B ILE 517 N -0.348 3.853
/A RCX 601 C3 /A VAL 349 CG1 -0.349 3.809
/B RCX 601 O6 /B SER 530 CB -0.350 3.510
/B RCX 601 C22 /B GLN 192 OE1 -0.353 3.713
/A RCX 601 O21 /A ARG 513 HH11 -0.358 2.458
/A RCX 601 C4 /A VAL 349 HG11 -0.358 3.058
/B RCX 601 C12 /B SER 530 OG -0.363 3.623
/B RCX 601 C16 /B LEU 352 O -0.364 3.544
/B RCX 601 C15 /B VAL 523 HG22 -0.370 3.130
/A RCX 601 C22 /A ILE 517 H -0.372 3.252
/B RCX 601 O21 /B HIS 90 CE1 -0.377 3.577
/A RCX 601 C1 /A VAL 349 HG13 -0.379 3.079
/B RCX 601 C14 /B LEU 352 O -0.382 3.622
/A RCX 601 C9 /A MET 522 O -0.382 3.622
/B RCX 601 S19 /B VAL 523 CG2 -0.382 3.864
/A RCX 601 C10 /A TRP 387 HH2 -0.384 3.144
/B RCX 601 O6 /B SER 530 HB2 -0.389 2.849
/B RCX 601 C1 /B VAL 349 HG13 -0.392 3.092
/B RCX 601 O6 /B ALA 527 CB -0.392 3.552
/B RCX 601 C15 /B LEU 352 HB3 -0.393 3.153
/A RCX 601 C9 /A GLY 526 CA -0.397 3.857
/A RCX 601 C17 /A VAL 523 HG21 -0.399 3.159
171 contacts
> contacts :rcx makePseudobonds true reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
171 contacts
atom1 atom2 overlap distance
/B RCX 601 C22 /B PHE 518 H 0.422 2.458
/A RCX 601 C22 /A PHE 518 H 0.403 2.477
/A RCX 601 C22 /A PHE 518 HB2 0.355 2.525
/B RCX 601 C22 /B PHE 518 HB2 0.339 2.541
/B RCX 601 C15 /B LEU 352 O 0.335 2.905
/A RCX 601 C18 /A VAL 523 CG1 0.317 3.143
/A RCX 601 C22 /A PHE 518 N 0.284 3.221
/B RCX 601 C22 /B PHE 518 N 0.267 3.238
/B RCX 601 C18 /B VAL 523 CG1 0.238 3.222
/A RCX 601 C22 /A PHE 518 CB 0.232 3.348
/A RCX 601 C15 /A LEU 352 O 0.225 3.015
/B RCX 601 C22 /B PHE 518 CB 0.216 3.364
/A RCX 601 C18 /A VAL 523 HG13 0.214 2.546
/B RCX 601 C15 /B LEU 352 C 0.203 3.257
/B RCX 601 C17 /B VAL 523 CG2 0.190 3.270
/B RCX 601 C15 /B SER 353 HA 0.161 2.599
/A RCX 601 C22 /A ALA 516 HB1 0.157 2.723
/B RCX 601 C18 /B VAL 523 HG13 0.150 2.610
/A RCX 601 O21 /A HIS 90 CE1 0.142 3.058
/A RCX 601 C15 /A LEU 352 C 0.117 3.343
/A RCX 601 C17 /A VAL 523 CG1 0.080 3.380
/B RCX 601 C16 /B VAL 523 CG2 0.053 3.347
/B RCX 601 C9 /B GLY 526 HA3 0.050 2.710
/B RCX 601 C15 /B SER 353 CA 0.041 3.419
/A RCX 601 C11 /A SER 530 OG 0.038 3.222
/A RCX 601 C4 /A ALA 527 CB 0.036 3.364
/B RCX 601 C4 /B VAL 349 CG1 0.034 3.366
/B RCX 601 C14 /B SER 353 HA 0.029 2.731
/A RCX 601 O6 /A ALA 527 HA 0.025 2.435
/B RCX 601 O20 /B SER 353 O 0.021 2.959
/B RCX 601 C14 /B SER 353 CA 0.018 3.442
/B RCX 601 C22 /B ALA 516 HB1 0.004 2.876
/A RCX 601 C14 /A LEU 352 HB3 -0.003 2.763
/B RCX 601 C17 /B VAL 523 HG21 -0.006 2.766
/B RCX 601 C17 /B VAL 523 CG1 -0.008 3.468
/B RCX 601 C16 /B SER 353 HA -0.013 2.713
/A RCX 601 C4 /A VAL 349 CG1 -0.021 3.421
/B RCX 601 C14 /B SER 353 N -0.030 3.415
/B RCX 601 C14 /B LEU 352 C -0.032 3.492
/A RCX 601 O20 /A SER 353 O -0.033 3.013
/B RCX 601 O21 /B ARG 513 CD -0.036 3.236
/B RCX 601 C22 /B ILE 517 CG2 -0.051 3.631
/A RCX 601 O21 /A ARG 513 CD -0.051 3.251
/B RCX 601 O21 /B ARG 513 HD2 -0.053 2.553
/A RCX 601 C17 /A SER 353 HA -0.061 2.821
/A RCX 601 C18 /A SER 353 HA -0.062 2.822
/B RCX 601 C14 /B LEU 352 HB3 -0.069 2.829
/A RCX 601 C15 /A SER 353 HA -0.071 2.831
/A RCX 601 C14 /A SER 353 HA -0.082 2.842
/B RCX 601 O5 /B VAL 349 CG1 -0.092 3.272
/B RCX 601 C8 /B VAL 523 HA -0.098 2.858
/A RCX 601 O6 /A ALA 527 CA -0.099 3.259
/A RCX 601 C18 /A TYR 355 OH -0.101 3.361
/B RCX 601 C22 /B PHE 518 CD2 -0.104 3.684
/A RCX 601 C22 /A ALA 516 CB -0.104 3.684
/B RCX 601 C22 /B ILE 517 HG22 -0.107 2.987
/A RCX 601 C22 /A ILE 517 HG22 -0.108 2.988
/A RCX 601 O20 /A GLN 192 OE1 -0.111 3.091
/B RCX 601 C9 /B GLY 526 CA -0.112 3.572
/A RCX 601 C18 /A VAL 523 HG11 -0.117 2.877
/A RCX 601 C17 /A VAL 523 HG11 -0.117 2.877
/A RCX 601 C16 /A SER 353 HA -0.123 2.823
/A RCX 601 C22 /A PHE 518 CA -0.126 3.706
/A RCX 601 C14 /A SER 353 CA -0.129 3.589
/A RCX 601 C14 /A LEU 352 C -0.130 3.590
/A RCX 601 C22 /A GLN 192 OE1 -0.133 3.493
/B RCX 601 C15 /B SER 353 N -0.134 3.519
/A RCX 601 C13 /A SER 353 HA -0.140 2.840
/B RCX 601 C4 /B VAL 349 HG13 -0.141 2.841
/B RCX 601 C22 /B PHE 518 CA -0.142 3.722
/A RCX 601 C22 /A ILE 517 CG2 -0.148 3.728
/A RCX 601 C15 /A SER 353 CA -0.154 3.614
/A RCX 601 C14 /A SER 353 N -0.155 3.540
/B RCX 601 O6 /B ALA 527 HA -0.155 2.615
/A RCX 601 O20 /A HIS 90 HE1 -0.157 2.657
/A RCX 601 C16 /A VAL 523 CG2 -0.161 3.561
/B RCX 601 C4 /B ALA 527 CB -0.168 3.568
/A RCX 601 C17 /A VAL 523 CG2 -0.169 3.629
/A RCX 601 C13 /A VAL 523 HG13 -0.171 2.871
/B RCX 601 C16 /B VAL 523 HG22 -0.178 2.878
/B RCX 601 C8 /B ALA 527 N -0.183 3.568
/B RCX 601 C17 /B SER 353 HA -0.184 2.944
/B RCX 601 C17 /B VAL 523 HG22 -0.189 2.949
/B RCX 601 C11 /B SER 530 OG -0.196 3.456
/A RCX 601 O20 /A HIS 90 CE1 -0.203 3.403
/A RCX 601 O21 /A ARG 513 HD2 -0.203 2.703
/A RCX 601 O20 /A LEU 352 O -0.210 3.190
/A RCX 601 C22 /A PHE 518 CD2 -0.211 3.791
/B RCX 601 O20 /B GLN 192 OE1 -0.212 3.192
/B RCX 601 C18 /B TYR 355 OH -0.221 3.481
/A RCX 601 C14 /A LEU 352 CB -0.222 3.682
/B RCX 601 C9 /B MET 522 O -0.223 3.463
/B RCX 601 C18 /B VAL 523 HG11 -0.225 2.985
/A RCX 601 C12 /A SER 530 OG -0.226 3.486
/B RCX 601 O21 /B HIS 90 CD2 -0.228 3.428
/A RCX 601 O5 /A VAL 349 CG1 -0.229 3.409
/A RCX 601 C4 /A VAL 349 HG13 -0.230 2.930
/B RCX 601 C16 /B VAL 523 HG21 -0.231 2.931
/A RCX 601 C9 /A GLY 526 HA3 -0.233 2.993
/A RCX 601 C10 /A TRP 387 CZ2 -0.233 3.693
/A RCX 601 C8 /A VAL 523 HA -0.239 2.999
/B RCX 601 C17 /B VAL 523 HG11 -0.243 3.003
/B RCX 601 C14 /B LEU 352 CB -0.243 3.703
/B RCX 601 C22 /B PHE 518 HD2 -0.244 3.124
/B RCX 601 C10 /B TRP 387 HZ2 -0.248 3.008
/B RCX 601 C16 /B SER 353 CA -0.252 3.652
/A RCX 601 C13 /A SER 353 CA -0.256 3.656
/B RCX 601 C3 /B VAL 349 CG1 -0.260 3.720
/B RCX 601 C22 /B ALA 516 CB -0.260 3.840
/B RCX 601 C13 /B SER 353 HA -0.263 2.963
/A RCX 601 C15 /A SER 353 N -0.263 3.648
/B RCX 601 O20 /B LEU 352 O -0.264 3.244
/A RCX 601 C1 /A ALA 527 CB -0.266 3.666
/A RCX 601 C1 /A ALA 527 HB2 -0.267 2.967
/A RCX 601 C4 /A ALA 527 HB2 -0.268 2.968
/A RCX 601 C22 /A PHE 518 CG -0.272 3.852
/A RCX 601 C10 /A TRP 387 HZ2 -0.272 3.032
/B RCX 601 C22 /B ILE 517 H -0.273 3.153
/A RCX 601 C4 /A ALA 527 CA -0.274 3.674
/A RCX 601 C17 /A VAL 523 HG13 -0.275 3.035
/A RCX 601 O6 /A ALA 527 CB -0.276 3.436
/B RCX 601 O6 /B ALA 527 CA -0.277 3.437
/A RCX 601 C18 /A SER 353 CA -0.277 3.737
/B RCX 601 O21 /B ARG 513 HH11 -0.278 2.378
/A RCX 601 S19 /A HIS 90 CE1 -0.285 3.767
/B RCX 601 C22 /B PHE 518 CG -0.288 3.868
/A RCX 601 C8 /A ALA 527 N -0.291 3.676
/B RCX 601 C18 /B VAL 523 CG2 -0.295 3.755
/A RCX 601 C16 /A LEU 352 O -0.296 3.476
/B RCX 601 C18 /B SER 353 HA -0.296 3.056
/B RCX 601 C9 /B VAL 523 HA -0.300 3.060
/A RCX 601 C10 /A TRP 387 CH2 -0.301 3.761
/B RCX 601 C13 /B SER 353 CA -0.302 3.702
/B RCX 601 C10 /B TRP 387 CZ2 -0.302 3.762
/A RCX 601 C16 /A SER 353 CA -0.307 3.707
/B RCX 601 C9 /B GLY 526 C -0.308 3.768
/A RCX 601 C17 /A SER 353 CA -0.310 3.770
/A RCX 601 C4 /A ALA 527 HA -0.312 3.012
/B RCX 601 O21 /B HIS 90 NE2 -0.322 3.047
/A RCX 601 C15 /A LEU 352 HB3 -0.324 3.084
/A RCX 601 O21 /A VAL 523 HG21 -0.327 2.827
/A RCX 601 O6 /A LEU 531 HG -0.331 2.791
/A RCX 601 C13 /A VAL 523 CG1 -0.332 3.732
/B RCX 601 C4 /B VAL 349 HG11 -0.332 3.032
/B RCX 601 C8 /B VAL 523 CA -0.337 3.797
/B RCX 601 O21 /B VAL 523 HG21 -0.340 2.840
/A RCX 601 C22 /A ILE 517 N -0.342 3.847
/B RCX 601 S19 /B HIS 90 NE2 -0.344 3.751
/A RCX 601 C16 /A VAL 523 HG22 -0.346 3.046
/B RCX 601 C22 /B ILE 517 N -0.348 3.853
/A RCX 601 C3 /A VAL 349 CG1 -0.349 3.809
/B RCX 601 O6 /B SER 530 CB -0.350 3.510
/B RCX 601 C22 /B GLN 192 OE1 -0.353 3.713
/A RCX 601 O21 /A ARG 513 HH11 -0.358 2.458
/A RCX 601 C4 /A VAL 349 HG11 -0.358 3.058
/B RCX 601 C12 /B SER 530 OG -0.363 3.623
/B RCX 601 C16 /B LEU 352 O -0.364 3.544
/B RCX 601 C15 /B VAL 523 HG22 -0.370 3.130
/A RCX 601 C22 /A ILE 517 H -0.372 3.252
/B RCX 601 O21 /B HIS 90 CE1 -0.377 3.577
/A RCX 601 C1 /A VAL 349 HG13 -0.379 3.079
/B RCX 601 C14 /B LEU 352 O -0.382 3.622
/A RCX 601 C9 /A MET 522 O -0.382 3.622
/B RCX 601 S19 /B VAL 523 CG2 -0.382 3.864
/A RCX 601 C10 /A TRP 387 HH2 -0.384 3.144
/B RCX 601 O6 /B SER 530 HB2 -0.389 2.849
/B RCX 601 C1 /B VAL 349 HG13 -0.392 3.092
/B RCX 601 O6 /B ALA 527 CB -0.392 3.552
/B RCX 601 C15 /B LEU 352 HB3 -0.393 3.153
/A RCX 601 C9 /A GLY 526 CA -0.397 3.857
/A RCX 601 C17 /A VAL 523 HG21 -0.399 3.159
171 contacts
> contacts :rcx makePseudobonds true reveal true log false
171 contacts
> contacts :rcx makePseudobonds false reveal true log false
171 contacts
> label @@display
> hide ~sel
> show sel
> select :RCX
44 atoms, 48 bonds, 2 residues, 1 model selected
> show sel
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> select :COH
146 atoms, 152 bonds, 8 pseudobonds, 2 residues, 2 models selected
> show sel
> select clear
> select /A:602@CO
1 atom, 1 residue, 1 model selected
> select up
73 atoms, 76 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /B:355
21 atoms, 21 bonds, 1 residue, 1 model selected
> color sel blue
> select /B:523
16 atoms, 15 bonds, 1 residue, 1 model selected
> select clear
> select /B:524
15 atoms, 14 bonds, 1 residue, 1 model selected
> color sel blue
> select /B:120
24 atoms, 23 bonds, 1 residue, 1 model selected
> color sel blue
> select /B:385
21 atoms, 21 bonds, 1 residue, 1 model selected
> color sel green
> select /B:522
17 atoms, 16 bonds, 1 residue, 1 model selected
> select up
253 atoms, 254 bonds, 18 residues, 1 model selected
> color sel light blue
> select clear
> select /B:524
15 atoms, 14 bonds, 1 residue, 1 model selected
> color sel blue
> select clear
> select /B:101
14 atoms, 13 bonds, 1 residue, 1 model selected
> select up
167 atoms, 170 bonds, 10 residues, 1 model selected
> select up
8977 atoms, 9046 bonds, 628 residues, 1 model selected
> select down
167 atoms, 170 bonds, 10 residues, 1 model selected
> select /B:113
17 atoms, 16 bonds, 1 residue, 1 model selected
> select up
300 atoms, 303 bonds, 18 residues, 1 model selected
> select /B:113
17 atoms, 16 bonds, 1 residue, 1 model selected
Alignment identifier is 1/B
> select clear
Alignment identifier is 1
> select /B:308
15 atoms, 14 bonds, 1 residue, 1 model selected
> select up
437 atoms, 442 bonds, 26 residues, 1 model selected
> select up
8977 atoms, 9046 bonds, 628 residues, 1 model selected
Destroying pre-existing alignment with identifier 1/B
Alignment identifier is 1/B
> select clear
Alignment identifier is 2
Alignment identifier is 3
> select /A:34-583
8795 atoms, 8932 bonds, 551 residues, 1 model selected
> select /B:34-583
8764 atoms, 8901 bonds, 551 residues, 1 model selected
Destroying pre-existing alignment with identifier 1/B
Alignment identifier is 1/B
> sequence chain /A
Alignment identifier is 1/A
> sequence chain /A
Destroying pre-existing alignment with identifier 1/A
Alignment identifier is 1/A
> select /A:34-583
8795 atoms, 8932 bonds, 551 residues, 1 model selected
> sequence chain /A
Destroying pre-existing alignment with identifier 1/A
Alignment identifier is 1/A
Destroying pre-existing alignment with identifier 1/A
Alignment identifier is 1/A
> sequence chain /B
Alignment identifier is 1/B
> select clear
> color sel lightblue
> color sel blue
> select clear
> save "/Users/roy/Cox-2 W1.cxs"
> save "/Users/roy/COX-2 Struc/cox-2 model 1.cxs"
opened ChimeraX session
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel(R) UHD Graphics 617
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir8,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 1.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 1037.147.4.0.0 (iBridge: 17.16.16610.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.6 (19G2021)
Kernel Version: Darwin 19.6.0
Time since boot: 1:09
Graphics/Displays:
Intel UHD Graphics 617:
Chipset Model: Intel UHD Graphics 617
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x87c0
Revision ID: 0x0002
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
273ELH:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: AU01438006431
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: Thunderbolt/DisplayPort
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Dual display crash |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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