Opened 5 years ago
Closed 5 years ago
#4253 closed defect (can't reproduce)
Permission denied saving image
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-8.1-6.3.9600
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
I cant save hidrophofic png image
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\GUILLERMO\Documents\ALEX HP\DENGUE\SEQUENCE
> ANALISYS\1okesinagua.pdb" format pdb
Summary of feedback from opening C:\Users\GUILLERMO\Documents\ALEX
HP\DENGUE\SEQUENCE ANALISYS\1okesinagua.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Accelrys Discovery Studio PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2020-06-19T19:25:40Z
Chain information for 1okesinagua.pdb #1
---
Chain | Description
A B | No description available
> close session
No such database 'C'
> open "C:/Users/GUILLERMO/Documents/ALEX HP/DENGUE/PDB´s/1oke.pdb"
1oke.pdb title:
Crystal structure of the dengue 2 virus envelope protein In complex with
N-octyl-β-D-glucoside [more info...]
Chain information for 1oke.pdb #1
---
Chain | Description
A B | dengue virus TYPE 2 major envelope protein E
Non-standard residues in 1oke.pdb #1
---
BMA — β-D-mannopyranose
BOG — octyl β-D-glucopyranoside
FUL — β-L-fucopyranose (6-deoxy-β-L-galactose)
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> color sel bychain
> select clear
> color bychain
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> cofr sel
> view sel
Drag select of 8 atoms, 24 residues, 6 bonds
> mlp sel
Map values for surface "1oke.pdb_B SES surface": minimum -32.54, mean -5.348,
maximum 26.25
> hide sel surfaces
> show (#!1 & sel) target ab
> label (#!1 & sel) text "/{0.chain_id} {0.name} {0.number}{0.insertion_code}"
> select clear
Drag select of 150 atoms, 92 residues, 128 bonds
> hide (#!1 & sel) target a
> ~label (#!1 & sel) residues
> select clear
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> show sel target ab
> select clear
> select clear
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> color sel orange
> cofr sel
> view sel
> select clear
> select /A
3145 atoms, 3165 bonds, 1 model selected
> select /B
3183 atoms, 3165 bonds, 1 model selected
> mlp sel
Map values for surface "1oke.pdb_B SES surface": minimum -32.54, mean -5.348,
maximum 26.25
> select /B:198@CD2
1 atom, 1 model selected
> select clear
> select ::name="BOG"
40 atoms, 40 bonds, 1 model selected
> color sel orange red
> color sel red
> hbonds sel
10 hydrogen bonds found
> ~hbonds
> select /B:193@CE1
1 atom, 1 model selected
> select clear
> save "C:/Users/GUILLERMO/Documents/región BOG.png" width 1900 height 767
> supersample 3
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\chimerax\ui\gui.py",
line 1541, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\image_formats\\__init__.py", line 24, in save
save_image(session, path, format_name, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\image_formats\save.py", line 115, in save_image
i.save(path, format_name, **metadata)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line
2131, in save
fp = builtins.open(filename, "w+b")
PermissionError: [Errno 13] Permission denied:
'C:/Users/GUILLERMO/Documents/región BOG.png'
PermissionError: [Errno 13] Permission denied:
'C:/Users/GUILLERMO/Documents/región BOG.png'
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line
2131, in save
fp = builtins.open(filename, "w+b")
See log for complete Python traceback.
> set bgColor white
> set bgColor black
> hide cartoons
> show cartoons
> hide cartoons
> save C:/Users/GUILLERMO/Documents/BOG.png width 1900 height 767 supersample
> 3
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 162, in callback
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 363, in run_provider
return api._api_caller.run_provider(api, session, name, mgr, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1607, in run_provider
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\toolbar\\__init__.py", line 38, in run_provider
providers.run_provider(session, name)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 45, in run_provider
what(session)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\toolbar\providers.py", line 27, in _file_save
show_save_file_dialog(session)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\image_formats\\__init__.py", line 24, in save
save_image(session, path, format_name, **kw)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-
packages\chimerax\image_formats\save.py", line 115, in save_image
i.save(path, format_name, **metadata)
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line
2131, in save
fp = builtins.open(filename, "w+b")
PermissionError: [Errno 13] Permission denied:
'C:/Users/GUILLERMO/Documents/BOG.png'
PermissionError: [Errno 13] Permission denied:
'C:/Users/GUILLERMO/Documents/BOG.png'
File "C:\Program Files\ChimeraX 1.0\bin\lib\site-packages\PIL\Image.py", line
2131, in save
fp = builtins.open(filename, "w+b")
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 10.18.14.4029
OpenGL renderer: Intel(R) HD Graphics 5500
OpenGL vendor: Intel
Manufacturer: Hewlett-Packard
Model: HP ENVY x360 Convertible
OS: Microsoft Windows 8.1 Single Language (Build 9600)
Memory: 8,502,923,264
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-5200U CPU @ 2.20GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Permission denied saving image |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Really? Can't save to his own Documents folder?