![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 18 months ago
#4159 closed defect (fixed)
Crash in garbage collection during new-object allocation
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [756]
Path: /Volumes/VOLUME/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [756]
User ID: 501
Date/Time: 2021-01-22 09:56:26.206 -0600
OS Version: Mac OS X 10.14.3 (18D42)
Report Version: 12
Anonymous UUID: 6F90355C-9E0A-C96E-8596-823202AEBC66
Sleep/Wake UUID: 1319854D-1D8C-47C2-8B22-DA8B771D5CDC
Time Awake Since Boot: 3900 seconds
Time Since Wake: 1900 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 00000001010e7000-00000001010e8000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff682ac23e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff68362c1c pthread_kill + 285
2 libsystem_c.dylib 0x00007fff681c8096 raise + 26
3 libsystem_platform.dylib 0x00007fff68357b3d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000101163980 tupletraverse + 64
6 org.python.python 0x00000001012499a3 collect + 2083
7 org.python.python 0x000000010124a14e _PyObject_GC_Alloc + 286
8 org.python.python 0x000000010124a224 _PyObject_GC_New + 20
9 org.python.python 0x0000000101133f2c list_iter + 60
10 org.python.python 0x0000000101103068 PyObject_GetIter + 24
11 org.python.python 0x00000001011e9e1f _PyEval_EvalFrameDefault + 24015
12 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
13 org.python.python 0x0000000101118879 _PyFunction_FastCallKeywords + 217
14 org.python.python 0x00000001011edbd4 call_function + 772
15 org.python.python 0x00000001011ea8ae _PyEval_EvalFrameDefault + 26718
16 org.python.python 0x0000000101118d61 function_code_fastcall + 177
17 org.python.python 0x00000001011edbd4 call_function + 772
18 org.python.python 0x00000001011ea8ae _PyEval_EvalFrameDefault + 26718
19 org.python.python 0x0000000101118d61 function_code_fastcall + 177
20 org.python.python 0x00000001011edbd4 call_function + 772
21 org.python.python 0x00000001011ea7fa _PyEval_EvalFrameDefault + 26538
22 org.python.python 0x0000000101118d61 function_code_fastcall + 177
23 org.python.python 0x00000001011edbd4 call_function + 772
24 org.python.python 0x00000001011ea7fa _PyEval_EvalFrameDefault + 26538
25 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
26 org.python.python 0x0000000101118377 _PyFunction_FastCallDict + 455
27 sip.so 0x000000010e31ef7a call_method + 76
28 sip.so 0x000000010e31ad07 sip_api_call_procedure_method + 152
29 QtGui.so 0x000000010f93b027 sipQWindow::mouseMoveEvent(QMouseEvent*) + 103
30 QtGui 0x000000010eb24fb8 QWindow::event(QEvent*) + 264
31 QtGui.so 0x000000010f9c0b1b meth_QWindow_event(_object*, _object*) + 139
32 org.python.python 0x0000000101119382 _PyMethodDef_RawFastCallKeywords + 226
33 org.python.python 0x00000001011188b9 _PyCFunction_FastCallKeywords + 41
34 org.python.python 0x00000001011edb60 call_function + 656
35 org.python.python 0x00000001011ea817 _PyEval_EvalFrameDefault + 26567
36 org.python.python 0x0000000101118d61 function_code_fastcall + 177
37 org.python.python 0x0000000101119873 _PyObject_Call_Prepend + 131
38 org.python.python 0x00000001011189d8 PyObject_Call + 136
39 sip.so 0x000000010e31ef7a call_method + 76
40 sip.so 0x000000010e31ac40 sip_api_call_method + 136
41 QtGui.so 0x000000010f93bc7b sipQWindow::event(QEvent*) + 123
42 QtWidgets 0x000000010e54067d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
43 QtWidgets 0x000000010e541a82 QApplication::notify(QObject*, QEvent*) + 594
44 QtWidgets.so 0x000000010dee63ca sipQApplication::notify(QObject*, QEvent*) + 234
45 QtCore 0x000000010f22c324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
46 QtGui 0x000000010eb15779 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961
47 QtGui 0x000000010eafc46b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
48 libqcocoa.dylib 0x0000000118de4900 0x118dae000 + 223488
49 libqcocoa.dylib 0x0000000118de5068 0x118dae000 + 225384
50 com.apple.CoreFoundation 0x00007fff3aeeb475 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
51 com.apple.CoreFoundation 0x00007fff3aeeb41b __CFRunLoopDoSource0 + 108
52 com.apple.CoreFoundation 0x00007fff3aeceeb5 __CFRunLoopDoSources0 + 195
53 com.apple.CoreFoundation 0x00007fff3aece45e __CFRunLoopRun + 1219
54 com.apple.CoreFoundation 0x00007fff3aecdd48 CFRunLoopRunSpecific + 463
55 com.apple.HIToolbox 0x00007fff3a164ab5 RunCurrentEventLoopInMode + 293
56 com.apple.HIToolbox 0x00007fff3a1646f4 ReceiveNextEventCommon + 371
57 com.apple.HIToolbox 0x00007fff3a164568 _BlockUntilNextEventMatchingListInModeWithFilter + 64
58 com.apple.AppKit 0x00007fff3841f363 _DPSNextEvent + 997
59 com.apple.AppKit 0x00007fff3841e102 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
60 com.apple.AppKit 0x00007fff38418165 -[NSApplication run] + 699
61 libqcocoa.dylib 0x0000000118de3de3 0x118dae000 + 220643
62 QtCore 0x000000010f22793f QEventLoop::exec(QFlags) + 431
63 QtCore 0x000000010f22c932 QCoreApplication::exec() + 130
64 QtWidgets.so 0x000000010dfd57d2 meth_QApplication_exec_(_object*, _object*) + 82
65 org.python.python 0x0000000101119382 _PyMethodDef_RawFastCallKeywords + 226
66 org.python.python 0x00000001011188b9 _PyCFunction_FastCallKeywords + 41
67 org.python.python 0x00000001011edb60 call_function + 656
68 org.python.python 0x00000001011ea817 _PyEval_EvalFrameDefault + 26567
69 org.python.python 0x0000000101118d61 function_code_fastcall + 177
70 org.python.python 0x00000001011edbd4 call_function + 772
71 org.python.python 0x00000001011ea817 _PyEval_EvalFrameDefault + 26567
72 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
73 org.python.python 0x0000000101118879 _PyFunction_FastCallKeywords + 217
74 org.python.python 0x00000001011edbd4 call_function + 772
75 org.python.python 0x00000001011ea8ae _PyEval_EvalFrameDefault + 26718
76 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
77 org.python.python 0x00000001011e3fb0 PyEval_EvalCode + 48
78 org.python.python 0x00000001011e1547 builtin_exec + 583
79 org.python.python 0x000000010111952d _PyMethodDef_RawFastCallKeywords + 653
80 org.python.python 0x00000001011188b9 _PyCFunction_FastCallKeywords + 41
81 org.python.python 0x00000001011edb60 call_function + 656
82 org.python.python 0x00000001011ea8ae _PyEval_EvalFrameDefault + 26718
83 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
84 org.python.python 0x0000000101118879 _PyFunction_FastCallKeywords + 217
85 org.python.python 0x00000001011edbd4 call_function + 772
86 org.python.python 0x00000001011ea8ae _PyEval_EvalFrameDefault + 26718
87 org.python.python 0x00000001011eea2c _PyEval_EvalCodeWithName + 3276
88 org.python.python 0x0000000101118377 _PyFunction_FastCallDict + 455
89 org.python.python 0x0000000101248af3 pymain_run_module + 147
90 org.python.python 0x0000000101247bdc pymain_main + 5900
91 org.python.python 0x00000001012464c3 Py_Main + 51
92 edu.ucsf.cgl.ChimeraX 0x00000001010e7dc8 main + 120
93 libdyld.dylib 0x00007fff6816ced9 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3aecf0c2 __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff3aece611 __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff3aecdd48 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff38427f89 _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111ee905d 0x10fd93000 + 34955357
5 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff682ac716 kevent + 10
1 QtWebEngineCore 0x00000001121f69a9 0x10fd93000 + 38156713
2 QtWebEngineCore 0x00000001121f3cbd 0x10fd93000 + 38145213
3 QtWebEngineCore 0x0000000111faacdc 0x10fd93000 + 35749084
4 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
5 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
6 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff682ac716 kevent + 10
1 QtWebEngineCore 0x00000001121f69a9 0x10fd93000 + 38156713
2 QtWebEngineCore 0x00000001121f3cbd 0x10fd93000 + 38145213
3 QtWebEngineCore 0x0000000111faacc4 0x10fd93000 + 35749060
4 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
5 QtWebEngineCore 0x0000000111f53a74 0x10fd93000 + 35392116
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 5:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f35421 0x10fd93000 + 35267617
4 QtWebEngineCore 0x0000000111f4cd28 0x10fd93000 + 35364136
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d2c4 0x10fd93000 + 35365572
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 6:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f35421 0x10fd93000 + 35267617
4 QtWebEngineCore 0x0000000111f4cd28 0x10fd93000 + 35364136
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d2c4 0x10fd93000 + 35365572
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 7:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f35421 0x10fd93000 + 35267617
4 QtWebEngineCore 0x0000000111f4cd28 0x10fd93000 + 35364136
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d234 0x10fd93000 + 35365428
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 8:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff682ac716 kevent + 10
1 QtWebEngineCore 0x00000001121f69a9 0x10fd93000 + 38156713
2 QtWebEngineCore 0x00000001121f3cbd 0x10fd93000 + 38145213
3 QtWebEngineCore 0x0000000111faacc4 0x10fd93000 + 35749060
4 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
5 QtWebEngineCore 0x0000000111880fe4 0x10fd93000 + 28237796
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 9:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111f4cd1a 0x10fd93000 + 35364122
5 QtWebEngineCore 0x0000000111f4d3bf 0x10fd93000 + 35365823
6 QtWebEngineCore 0x0000000111f4d264 0x10fd93000 + 35365476
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 10:: CompositorTileWorker1/73987
0 libsystem_kernel.dylib 0x00007fff682a97de __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68363593 _pthread_cond_wait + 724
2 QtWebEngineCore 0x0000000111fa2fa8 0x10fd93000 + 35717032
3 QtWebEngineCore 0x0000000112f294c8 0x10fd93000 + 51995848
4 QtWebEngineCore 0x0000000111f63694 0x10fd93000 + 35456660
5 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
6 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 11:: AudioThread
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111ee905d 0x10fd93000 + 34955357
5 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 12:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111ee9052 0x10fd93000 + 34955346
4 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
5 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
6 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 13:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff682ac716 kevent + 10
1 QtWebEngineCore 0x00000001121f69a9 0x10fd93000 + 38156713
2 QtWebEngineCore 0x00000001121f3cbd 0x10fd93000 + 38145213
3 QtWebEngineCore 0x0000000111faacdc 0x10fd93000 + 35749084
4 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
5 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
6 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
9 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111ee905d 0x10fd93000 + 34955357
5 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 15:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111f4cd1a 0x10fd93000 + 35364122
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d324 0x10fd93000 + 35365668
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111ee905d 0x10fd93000 + 34955357
5 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f3522f 0x10fd93000 + 35267119
4 QtWebEngineCore 0x0000000111ee905d 0x10fd93000 + 34955357
5 QtWebEngineCore 0x0000000111f12085 0x10fd93000 + 35123333
6 QtWebEngineCore 0x0000000111f649bc 0x10fd93000 + 35461564
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 18:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f35421 0x10fd93000 + 35267617
4 QtWebEngineCore 0x0000000111f4cd28 0x10fd93000 + 35364136
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d234 0x10fd93000 + 35365428
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff682a97de __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68363593 _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000102be1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff682a97de __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68363593 _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000102be1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff682a97de __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68363593 _pthread_cond_wait + 724
2 libopenblasp-r0.3.7.dylib 0x0000000102be1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
5 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6835f3f8 start_wqthread + 0
1 ??? 0x0000600000bff2e0 0 + 105553128846048
Thread 23:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff682a617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff682a66d0 mach_msg + 60
2 QtWebEngineCore 0x0000000111f3532d 0x10fd93000 + 35267373
3 QtWebEngineCore 0x0000000111f35421 0x10fd93000 + 35267617
4 QtWebEngineCore 0x0000000111f4cd28 0x10fd93000 + 35364136
5 QtWebEngineCore 0x0000000111f4d65b 0x10fd93000 + 35366491
6 QtWebEngineCore 0x0000000111f4d2c4 0x10fd93000 + 35365572
7 QtWebEngineCore 0x0000000111fa4717 0x10fd93000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68360305 _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6836326f _pthread_start + 70
10 libsystem_pthread.dylib 0x00007fff6835f415 thread_start + 13
Thread 24:
0 libsystem_pthread.dylib 0x00007fff6835f3f8 start_wqthread + 0
1 ??? 0x0000000000000903 0 + 2307
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010e5055c0 rcx: 0x000000010155da48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010155da80 rsp: 0x000000010155da48
r8: 0x000000010155df48 r9: 0x1bae1727e18a82c7 r10: 0x000000010e50566c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x000000015111a6d0 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff682ac23e rfl: 0x0000000000000286 cr2: 0x0000000106141000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
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0x7fff45e82000 - 0x7fff460dbfff com.apple.QuartzCore (1.11 - 696.3) /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x7fff460dc000 - 0x7fff46135ff7 com.apple.QuickLookFramework (5.0 - 775.3) /System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook
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0x7fff46c58000 - 0x7fff46ce7fff com.apple.securityfoundation (6.0 - 55185.200.14) /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation
0x7fff46ce8000 - 0x7fff46d18ffb com.apple.securityinterface (10.0 - 55109.200.8) /System/Library/Frameworks/SecurityInterface.framework/Versions/A/SecurityInterface
0x7fff46d19000 - 0x7fff46d1dff3 com.apple.xpc.ServiceManagement (1.0 - 1) /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
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0x7fff6628d000 - 0x7fff662e1ff3 libcurl.4.dylib (105.200.2) /usr/lib/libcurl.4.dylib
0x7fff6639b000 - 0x7fff6639bfff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib
0x7fff6639c000 - 0x7fff663b5ffb libexpat.1.dylib (16.1.1) /usr/lib/libexpat.1.dylib
0x7fff663cd000 - 0x7fff663d2ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff663d3000 - 0x7fff663d8ff7 libheimdal-asn1.dylib (520.220.2) /usr/lib/libheimdal-asn1.dylib
0x7fff66404000 - 0x7fff664f5ff7 libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff664f6000 - 0x7fff66759ffb libicucore.A.dylib (62109.0.1) /usr/lib/libicucore.A.dylib
0x7fff667a6000 - 0x7fff667a7fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff667a8000 - 0x7fff667c0fff liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff667d8000 - 0x7fff66888fff libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff66889000 - 0x7fff66ac6ff7 libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff66c9e000 - 0x7fff66ff6ffb libnetwork.dylib (1229.240.1) /usr/lib/libnetwork.dylib
0x7fff67088000 - 0x7fff6780efe7 libobjc.A.dylib (750.1) /usr/lib/libobjc.A.dylib
0x7fff6780f000 - 0x7fff67810fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff67821000 - 0x7fff67825ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff67828000 - 0x7fff6785eff7 libpcap.A.dylib (79.200.4) /usr/lib/libpcap.A.dylib
0x7fff67978000 - 0x7fff67990ffb libresolv.9.dylib (65.200.2) /usr/lib/libresolv.9.dylib
0x7fff67992000 - 0x7fff679ceff7 libsandbox.1.dylib (851.230.3) /usr/lib/libsandbox.1.dylib
0x7fff679cf000 - 0x7fff679e1ff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff679e2000 - 0x7fff679e3ff7 libspindump.dylib (267.1) /usr/lib/libspindump.dylib
0x7fff679e4000 - 0x7fff67bbbfe7 libsqlite3.dylib (274.22) /usr/lib/libsqlite3.dylib
0x7fff67cbe000 - 0x7fff67d0bfff libssl.44.dylib (22.240.1) /usr/lib/libssl.44.dylib
0x7fff67e48000 - 0x7fff67e4bffb libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff67e4c000 - 0x7fff67e59fff libxar.1.dylib (404) /usr/lib/libxar.1.dylib
0x7fff67e5e000 - 0x7fff67f41fff libxml2.2.dylib (32.8) /usr/lib/libxml2.2.dylib
0x7fff67f42000 - 0x7fff67f6aff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib
0x7fff67f6b000 - 0x7fff67f7dffb libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff67fee000 - 0x7fff67ff2ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff67ff3000 - 0x7fff67ffdff3 libcommonCrypto.dylib (60118.220.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff67ffe000 - 0x7fff68005fff libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff68006000 - 0x7fff6800fff3 libcopyfile.dylib (146.200.3) /usr/lib/system/libcopyfile.dylib
0x7fff68010000 - 0x7fff68094fdf libcorecrypto.dylib (602.230.1) /usr/lib/system/libcorecrypto.dylib
0x7fff6811b000 - 0x7fff68155ff7 libdispatch.dylib (1008.220.2) /usr/lib/system/libdispatch.dylib
0x7fff68156000 - 0x7fff68185ff3 libdyld.dylib (655.1) /usr/lib/system/libdyld.dylib
0x7fff68186000 - 0x7fff68186ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff68187000 - 0x7fff68193ff7 libkxld.dylib (4903.241.1) /usr/lib/system/libkxld.dylib
0x7fff68194000 - 0x7fff68194ff7 liblaunch.dylib (1336.240.2) /usr/lib/system/liblaunch.dylib
0x7fff68195000 - 0x7fff6819afff libmacho.dylib (921) /usr/lib/system/libmacho.dylib
0x7fff6819b000 - 0x7fff6819dffb libquarantine.dylib (86.220.1) /usr/lib/system/libquarantine.dylib
0x7fff6819e000 - 0x7fff6819fff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff681a0000 - 0x7fff681b7ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff681b8000 - 0x7fff681b8fff libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff681b9000 - 0x7fff68241fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff68242000 - 0x7fff68245ff7 libsystem_configuration.dylib (963.200.27) /usr/lib/system/libsystem_configuration.dylib
0x7fff68246000 - 0x7fff68249ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6824a000 - 0x7fff68250ffb libsystem_darwin.dylib (1272.200.26) /usr/lib/system/libsystem_darwin.dylib
0x7fff68251000 - 0x7fff68257ff7 libsystem_dnssd.dylib (878.240.1) /usr/lib/system/libsystem_dnssd.dylib
0x7fff68258000 - 0x7fff682a4ff3 libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff682a5000 - 0x7fff682cdff7 libsystem_kernel.dylib (4903.241.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff682ce000 - 0x7fff68319ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff6831a000 - 0x7fff6833eff7 libsystem_malloc.dylib (166.220.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff6833f000 - 0x7fff6834aff3 libsystem_networkextension.dylib (767.240.1) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6834b000 - 0x7fff68352fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff68353000 - 0x7fff6835cfef libsystem_platform.dylib (177.200.16) /usr/lib/system/libsystem_platform.dylib
0x7fff6835d000 - 0x7fff68367fff libsystem_pthread.dylib (330.230.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff68368000 - 0x7fff6836bff7 libsystem_sandbox.dylib (851.230.3) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6836c000 - 0x7fff6836eff3 libsystem_secinit.dylib (30.220.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff6836f000 - 0x7fff68376ff7 libsystem_symptoms.dylib (820.237.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff68377000 - 0x7fff6838cff7 libsystem_trace.dylib (906.220.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6838e000 - 0x7fff68393ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff68394000 - 0x7fff683c4fff libxpc.dylib (1336.240.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 4
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 2062
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=705.2M resident=0K(0%) swapped_out_or_unallocated=705.2M(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 2
CG backing stores 336K 3
CG image 340K 39
CoreAnimation 1248K 60
CoreGraphics 8K 2
CoreImage 104K 23
CoreUI image data 1836K 43
CoreUI image file 568K 9
Foundation 32K 4
Kernel Alloc Once 336K 4
MALLOC 265.3M 82
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
OpenGL GLSL 512K 7
PROTECTED_MEMORY 4K 2
STACK GUARD 96K 25
Stack 155.2M 26
Stack Guard 56.0M 2
VM_ALLOCATE 157.8M 366
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 50.5M 522
__FONT_DATA 4K 2
__GLSLBUILTINS 5176K 2
__LINKEDIT 240.0M 145
__TEXT 465.2M 496
__UNICODE 564K 2
mapped file 744.3M 251
shared memory 712K 20
=========== ======= =======
TOTAL 2.5G 2129
TOTAL, minus reserved VM space 2.1G 2129
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.4.7
OpenGL renderer: Intel(R) Iris(TM) Pro Graphics 6200
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac16,2
Processor Name: Intel Core i5
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Memory: 16 GB
Boot ROM Version: 232.0.0.0.0
SMC Version (system): 2.32f20
Software:
System Software Overview:
System Version: macOS 10.14.3 (18D42)
Kernel Version: Darwin 18.2.0
Time since boot: 1:29
Graphics/Displays:
Intel Iris Pro Graphics 6200:
Chipset Model: Intel Iris Pro Graphics 6200
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1622
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (3)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection during new-object allocation |
comment:2 by , 5 years ago
| Status: | accepted → feedback |
|---|
comment:3 by , 18 months ago
| Resolution: | → fixed |
|---|---|
| Status: | feedback → closed |
Fixed in 1.8 release candidate
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Hi Elisa,
--Eric