![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#4142 closed defect (can't reproduce)
Crash in QtWebEngineCore in updateDirtyNodes()
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [62027]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [62027]
User ID: 501
Date/Time: 2021-01-17 20:54:32.439 -0800
OS Version: Mac OS X 10.15.7 (19H114)
Report Version: 12
Bridge OS Version: 5.1 (18P3030)
Anonymous UUID: 8A9DFDBC-D330-0813-0D35-02485F687BD2
Sleep/Wake UUID: 183A6E6B-7B81-464E-A971-882F4E081CA6
Time Awake Since Boot: 1300000 seconds
Time Since Wake: 12000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0:
-->
__TEXT 000000010a0d8000-000000010a0d9000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff68aa133a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff68b5de60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff689b893e raise + 26
3 libsystem_platform.dylib 0x00007fff68b525fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWebEngineCore 0x00000001226c7726 0x12269a000 + 186150
6 QtWebEngineCore 0x00000001226c6969 0x12269a000 + 182633
7 QtWebEngineCore 0x00000001226b6a65 0x12269a000 + 117349
8 QtQuick 0x00000001290f8a5c QQuickWindowPrivate::updateDirtyNode(QQuickItem*) + 2908
9 QtQuick 0x00000001290e7d39 QQuickWindowPrivate::updateDirtyNodes() + 1017
10 QtQuick 0x00000001290e772f QQuickWindowPrivate::syncSceneGraph() + 271
11 QtQuick 0x00000001291bcfbc QQuickRenderControl::sync() + 28
12 QtQuickWidgets 0x0000000129a3c46a 0x129a37000 + 21610
13 QtQuickWidgets 0x0000000129a3c598 0x129a37000 + 21912
14 QtCore 0x000000011ff50ab6 QObject::event(QEvent*) + 102
15 QtWidgets 0x000000011f2784da QWidget::event(QEvent*) + 4826
16 QtQuickWidgets 0x0000000129a402ce QQuickWidget::event(QEvent*) + 782
17 QtWebEngineWidgets 0x000000012266d0e7 0x122652000 + 110823
18 QtWidgets 0x000000011f23b67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
19 QtWidgets 0x000000011f23ca82 QApplication::notify(QObject*, QEvent*) + 594
20 QtWidgets.so 0x000000011edfb3ca sipQApplication::notify(QObject*, QEvent*) + 234
21 QtCore 0x000000011ff27324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
22 QtCore 0x000000011ff8093f QTimerInfoList::activateTimers() + 991
23 libqcocoa.dylib 0x0000000129c5a032 0x129c25000 + 217138
24 com.apple.CoreFoundation 0x00007fff2e8c2d52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
25 com.apple.CoreFoundation 0x00007fff2e8c2cf1 __CFRunLoopDoSource0 + 103
26 com.apple.CoreFoundation 0x00007fff2e8c2b0b __CFRunLoopDoSources0 + 209
27 com.apple.CoreFoundation 0x00007fff2e8c183a __CFRunLoopRun + 927
28 com.apple.CoreFoundation 0x00007fff2e8c0e3e CFRunLoopRunSpecific + 462
29 com.apple.HIToolbox 0x00007fff2d4edabd RunCurrentEventLoopInMode + 292
30 com.apple.HIToolbox 0x00007fff2d4ed7d5 ReceiveNextEventCommon + 584
31 com.apple.HIToolbox 0x00007fff2d4ed579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
32 com.apple.AppKit 0x00007fff2bb33039 _DPSNextEvent + 883
33 com.apple.AppKit 0x00007fff2bb31880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
34 com.apple.AppKit 0x00007fff2bb2358e -[NSApplication run] + 658
35 libqcocoa.dylib 0x0000000129c5ade3 0x129c25000 + 220643
36 QtCore 0x000000011ff2293f QEventLoop::exec(QFlags) + 431
37 QtCore 0x000000011ff27932 QCoreApplication::exec() + 130
38 QtWidgets.so 0x000000011eeea7d2 meth_QApplication_exec_(_object*, _object*) + 82
39 org.python.python 0x000000010a107382 _PyMethodDef_RawFastCallKeywords + 226
40 org.python.python 0x000000010a1068b9 _PyCFunction_FastCallKeywords + 41
41 org.python.python 0x000000010a1dbb60 call_function + 656
42 org.python.python 0x000000010a1d8817 _PyEval_EvalFrameDefault + 26567
43 org.python.python 0x000000010a106d61 function_code_fastcall + 177
44 org.python.python 0x000000010a1dbbd4 call_function + 772
45 org.python.python 0x000000010a1d8817 _PyEval_EvalFrameDefault + 26567
46 org.python.python 0x000000010a1dca2c _PyEval_EvalCodeWithName + 3276
47 org.python.python 0x000000010a106879 _PyFunction_FastCallKeywords + 217
48 org.python.python 0x000000010a1dbbd4 call_function + 772
49 org.python.python 0x000000010a1d88ae _PyEval_EvalFrameDefault + 26718
50 org.python.python 0x000000010a1dca2c _PyEval_EvalCodeWithName + 3276
51 org.python.python 0x000000010a1d1fb0 PyEval_EvalCode + 48
52 org.python.python 0x000000010a1cf547 builtin_exec + 583
53 org.python.python 0x000000010a10752d _PyMethodDef_RawFastCallKeywords + 653
54 org.python.python 0x000000010a1068b9 _PyCFunction_FastCallKeywords + 41
55 org.python.python 0x000000010a1dbb60 call_function + 656
56 org.python.python 0x000000010a1d88ae _PyEval_EvalFrameDefault + 26718
57 org.python.python 0x000000010a1dca2c _PyEval_EvalCodeWithName + 3276
58 org.python.python 0x000000010a106879 _PyFunction_FastCallKeywords + 217
59 org.python.python 0x000000010a1dbbd4 call_function + 772
60 org.python.python 0x000000010a1d88ae _PyEval_EvalFrameDefault + 26718
61 org.python.python 0x000000010a1dca2c _PyEval_EvalCodeWithName + 3276
62 org.python.python 0x000000010a106377 _PyFunction_FastCallDict + 455
63 org.python.python 0x000000010a236af3 pymain_run_module + 147
64 org.python.python 0x000000010a235bdc pymain_main + 5900
65 org.python.python 0x000000010a2344c3 Py_Main + 51
66 edu.ucsf.cgl.ChimeraX 0x000000010a0d8dc8 main + 120
67 libdyld.dylib 0x00007fff68959cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 4:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 5:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 6:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 7:
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010ba10c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 8:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2e8c2ef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2e8c19c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2e8c0e3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2bcd4954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x00000001247f005d 0x12269a000 + 34955357
5 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 10:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff68a9f766 kevent + 10
1 QtWebEngineCore 0x0000000124afd9a9 0x12269a000 + 38156713
2 QtWebEngineCore 0x0000000124afacbd 0x12269a000 + 38145213
3 QtWebEngineCore 0x00000001248b1cdc 0x12269a000 + 35749084
4 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
5 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
6 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 11:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff68a9f766 kevent + 10
1 QtWebEngineCore 0x0000000124afd9a9 0x12269a000 + 38156713
2 QtWebEngineCore 0x0000000124afacbd 0x12269a000 + 38145213
3 QtWebEngineCore 0x00000001248b1cc4 0x12269a000 + 35749060
4 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
5 QtWebEngineCore 0x000000012485aa74 0x12269a000 + 35392116
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 12:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c421 0x12269a000 + 35267617
4 QtWebEngineCore 0x0000000124853d28 0x12269a000 + 35364136
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x00000001248542c4 0x12269a000 + 35365572
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 13:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c421 0x12269a000 + 35267617
4 QtWebEngineCore 0x0000000124853d28 0x12269a000 + 35364136
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x00000001248542c4 0x12269a000 + 35365572
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 14:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c421 0x12269a000 + 35267617
4 QtWebEngineCore 0x0000000124853d28 0x12269a000 + 35364136
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x0000000124854234 0x12269a000 + 35365428
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 15:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c421 0x12269a000 + 35267617
4 QtWebEngineCore 0x0000000124853d28 0x12269a000 + 35364136
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x0000000124854234 0x12269a000 + 35365428
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 16:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff68a9f766 kevent + 10
1 QtWebEngineCore 0x0000000124afd9a9 0x12269a000 + 38156713
2 QtWebEngineCore 0x0000000124afacbd 0x12269a000 + 38145213
3 QtWebEngineCore 0x00000001248b1cc4 0x12269a000 + 35749060
4 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
5 QtWebEngineCore 0x0000000124187fe4 0x12269a000 + 28237796
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 17:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x0000000124853d1a 0x12269a000 + 35364122
5 QtWebEngineCore 0x00000001248543bf 0x12269a000 + 35365823
6 QtWebEngineCore 0x0000000124854264 0x12269a000 + 35365476
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 18:: CompositorTileWorker1/69635
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001248a9fa8 0x12269a000 + 35717032
3 QtWebEngineCore 0x00000001258304c8 0x12269a000 + 51995848
4 QtWebEngineCore 0x000000012486a694 0x12269a000 + 35456660
5 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
6 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 19:: AudioThread
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x00000001247f005d 0x12269a000 + 34955357
5 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 20:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x00000001247f0052 0x12269a000 + 34955346
4 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
5 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
6 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x00000001247f005d 0x12269a000 + 34955357
5 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 22:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff68a9f766 kevent + 10
1 QtWebEngineCore 0x0000000124afd9a9 0x12269a000 + 38156713
2 QtWebEngineCore 0x0000000124afacbd 0x12269a000 + 38145213
3 QtWebEngineCore 0x00000001248b1cdc 0x12269a000 + 35749084
4 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
5 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
6 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
7 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 23:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x0000000124853d1a 0x12269a000 + 35364122
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x0000000124854324 0x12269a000 + 35365668
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 24:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c22f 0x12269a000 + 35267119
4 QtWebEngineCore 0x00000001247f005d 0x12269a000 + 34955357
5 QtWebEngineCore 0x0000000124819085 0x12269a000 + 35123333
6 QtWebEngineCore 0x000000012486b9bc 0x12269a000 + 35461564
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 25:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff68a9d882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68b5e425 _pthread_cond_wait + 698
2 QtCore 0x000000011fd678ab 0x11fd3d000 + 174251
3 QtCore 0x000000011fd6780c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000011f466762 0x11f22b000 + 2340706
5 QtCore 0x000000011fd5f0b3 0x11fd3d000 + 139443
6 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 26:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff68a9adfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff68a9b170 mach_msg + 60
2 QtWebEngineCore 0x000000012483c32d 0x12269a000 + 35267373
3 QtWebEngineCore 0x000000012483c421 0x12269a000 + 35267617
4 QtWebEngineCore 0x0000000124853d28 0x12269a000 + 35364136
5 QtWebEngineCore 0x000000012485465b 0x12269a000 + 35366491
6 QtWebEngineCore 0x00000001248542c4 0x12269a000 + 35365572
7 QtWebEngineCore 0x00000001248ab717 0x12269a000 + 35723031
8 libsystem_pthread.dylib 0x00007fff68b5e109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff68b59b8b thread_start + 15
Thread 27:
0 libsystem_pthread.dylib 0x00007fff68b59b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000116c7ddc0 rcx: 0x00007f808008fa58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f808008fa80 rsp: 0x00007f808008fa58
r8: 0x00007f808008ff48 r9: 0x99bc798147de9ccb r10: 0x0000000116c7ddc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff68aa133a rfl: 0x0000000000000246 cr2: 0x000000010a341fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff66b53000 - 0x7fff66db5ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff67122000 - 0x7fff67151fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff67281000 - 0x7fff676fdff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff676fe000 - 0x7fff67715fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff6779e000 - 0x7fff677d1fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff677d2000 - 0x7fff677d3ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff677e4000 - 0x7fff677e8fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff677eb000 - 0x7fff67821ff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff67861000 - 0x7fff6786fff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff678a5000 - 0x7fff678bdfff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff678bf000 - 0x7fff67903ff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib
0x7fff67904000 - 0x7fff67916ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff67917000 - 0x7fff67918ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff67919000 - 0x7fff67b03ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff67bf7000 - 0x7fff67c24ffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff67cf9000 - 0x7fff67d53ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff67d54000 - 0x7fff67d57ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff67d58000 - 0x7fff67d65ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff67d6b000 - 0x7fff67e4dfff libxml2.2.dylib (33.7) /usr/lib/libxml2.2.dylib
0x7fff67e51000 - 0x7fff67e79fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff67e7a000 - 0x7fff67e8cff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6873b000 - 0x7fff68740ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff68741000 - 0x7fff6874cfff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6874d000 - 0x7fff68754fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff68755000 - 0x7fff6875eff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6875f000 - 0x7fff687f1fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff688fe000 - 0x7fff6893eff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6893f000 - 0x7fff68975fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff68976000 - 0x7fff68976ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff68977000 - 0x7fff68983ff3 libkxld.dylib (6153.141.10) /usr/lib/system/libkxld.dylib
0x7fff68984000 - 0x7fff68984ff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib
0x7fff68985000 - 0x7fff6898aff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6898b000 - 0x7fff6898dff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6898e000 - 0x7fff6898fff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff68990000 - 0x7fff689a7ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff689a8000 - 0x7fff689a8ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff689a9000 - 0x7fff68a30fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff68a31000 - 0x7fff68a34ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff68a35000 - 0x7fff68a38fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff68a39000 - 0x7fff68a41fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff68a42000 - 0x7fff68a49fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff68a4a000 - 0x7fff68a4bffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff68a4c000 - 0x7fff68a99ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff68a9a000 - 0x7fff68ac6ff7 libsystem_kernel.dylib (6153.141.10) /usr/lib/system/libsystem_kernel.dylib
0x7fff68ac7000 - 0x7fff68b0efff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff68b0f000 - 0x7fff68b36fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff68b37000 - 0x7fff68b44ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff68b45000 - 0x7fff68b4eff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff68b4f000 - 0x7fff68b57fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff68b58000 - 0x7fff68b62fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff68b63000 - 0x7fff68b67ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff68b68000 - 0x7fff68b6afff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff68b6b000 - 0x7fff68b72ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff68b73000 - 0x7fff68b89ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff68b8b000 - 0x7fff68b90ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff68b91000 - 0x7fff68bc6ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 47
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1172508
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=955.3M resident=0K(0%) swapped_out_or_unallocated=955.3M(100%)
Writable regions: Total=7.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=7.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 1024K 8
Activity Tracing 256K 1
CG backing stores 34.8M 6
CG image 732K 41
CoreAnimation 5620K 111
CoreGraphics 8K 1
CoreImage 28K 3
CoreUI image data 4468K 38
Foundation 20K 2
Kernel Alloc Once 8K 1
MALLOC 4.9G 776
MALLOC guard page 48K 9
MALLOC_MEDIUM (reserved) 1.4G 16 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 108K 27
Stack 149.2M 28
Stack Guard 56.0M 1
VM_ALLOCATE 332.3M 730
VM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated)
__DATA 64.4M 561
__DATA_CONST 132K 6
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 414.2M 146
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 541.1M 519
__UNICODE 564K 1
mapped file 361.1M 92
shared memory 672K 22
=========== ======= =======
TOTAL 8.5G 3161
TOTAL, minus reserved VM space 6.8G 3161
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-3.10.19
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1554.60.15.0.0 (iBridge: 18.16.13030.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H114)
Kernel Version: Darwin 19.6.0
Time since boot: 15 days 12:26
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-019
Option ROM Version: 113-D32206U1-019
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
LG Ultra HD:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: Thunderbolt/DisplayPort
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (7)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in QtWebEngineCore |
comment:2 by , 5 years ago
| Status: | accepted → feedback |
|---|
follow-up: 4 comment:4 by , 5 years ago
Hi,
I colored my map by local resolution. Then while I was trying to rotate/move the colored map, chimera x crashed. I reopened chimerax and repeated the same steps and it was working fine in the second time. Hope this helps.
Reta D Sarsam
Graduate Student
Biochemistry and Biophysics
University of California, San Diego
rsarsam@ucsd.edu
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Tuesday, January 19, 2021 10:02 AM
Cc: goddard@cgl.ucsf.edu <goddard@cgl.ucsf.edu>; pett@cgl.ucsf.edu <pett@cgl.ucsf.edu>; Reta D Sarsam <rsarsam@ucsd.edu>
Subject: Re: [ChimeraX] #4142: Crash in QtWebEngineCore
#4142: Crash in QtWebEngineCore
-------------------------------------+----------------------------
Reporter: rsarsam@… | Owner: Eric Pettersen
Type: defect | Status: feedback
Priority: normal | Milestone:
Component: Window Toolkit | Version:
Resolution: | Keywords:
Blocked By: | Blocking:
Notify when closed: | Platform: all
Project: ChimeraX |
-------------------------------------+----------------------------
Changes (by Eric Pettersen):
* status: accepted => feedback
Comment:
Hi Reta,
Do you have any recollection what was going on in ChimeraX when
this crash occurred?
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
--
Ticket URL: <https://urldefense.com/v3/__https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/4142*comment:2__;Iw!!Mih3wA!RqFxZZHVnY_5nUIRk4YsN5e4fma0h8Y9V-UhAfx2KzJ7j1a-Q8uxXWrGaXN5f0g$ >
ChimeraX <https://urldefense.com/v3/__http://www.rbvi.ucsf.edu/chimerax/__;!!Mih3wA!RqFxZZHVnY_5nUIRk4YsN5e4fma0h8Y9V-UhAfx2KzJ7j1a-Q8uxXWrG9tgS4Sk$ >
ChimeraX Issue Tracker
comment:5 by , 5 years ago
| Status: | feedback → accepted |
|---|
comment:6 by , 5 years ago
| Cc: | added; removed |
|---|---|
| Component: | Window Toolkit → Graphics |
| Owner: | changed from to |
| Status: | accepted → assigned |
| Summary: | Crash in QtWebEngineCore → Crash in QtWebEngineCore while manipulating map |
comment:7 by , 5 years ago
| Component: | Graphics → Window Toolkit |
|---|---|
| Resolution: | → can't reproduce |
| Status: | assigned → closed |
| Summary: | Crash in QtWebEngineCore while manipulating map → Crash in QtWebEngineCore in updateDirtyNodes() |
There have been 15 ChimeraX bug reports of this crash in the Qt function QQuickWindowPrivate::updateDirtyNode() in the past 12 months. It is surely a QtWebEngine bug.
Interestingly in the oldest reports #2570 Tristan Croll found that specific web page content in the ChimeraX Help Viewer caused this crash, depended on the position of anchors near the top of the page. Other reports say clicking a command in the log caused the crash -- most likely because it was showing the help viewer.
Surveying the bug reports shows the crash does not require two displays.
If we had a reproducible case we could file a Qt bug report. Possibly certain ChimeraX documentation pages routinely crash ChimeraX. Without a reproducible case we will need to wait for Qt to fix the problem.
I tried clicking on about 50 links to different ChimeraX command documentation and never got a crash.
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Hi Reta,
--Eric