![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#4203 closed defect (nonchimerax)
Crash in PyOpenGL-accelerate(?)
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.93 (2020-04-03)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [1889]
Path: /Applications/ChimeraX-0.93.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 0.93.0 (0.93.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [1889]
User ID: 501
Date/Time: 2021-02-02 10:05:20.933 -0500
OS Version: Mac OS X 10.13.6 (17G14033)
Report Version: 12
Anonymous UUID: DA745083-00D6-C78B-86CC-4648EC76321A
Sleep/Wake UUID: C188EBB4-FC3C-4500-AC7F-2E90EE5D437F
Time Awake Since Boot: 23000 seconds
Time Since Wake: 2500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_INSTRUCTION (SIGILL)
Exception Codes: 0x0000000000000001, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
*** CFRetain() called with NULL ***
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7c8d5b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7caa0080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff7c7e36fe raise + 26
3 libsystem_platform.dylib 0x00007fff7ca93f5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x0000000121628113 IntelVertexArray::extractBuffers(GLDVertexArrayRec*, unsigned long long, unsigned long long) + 231
6 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x0000000121628023 glrUpdateVertexArrayBuffers + 13
7 libGPUSupportMercury.dylib 0x00007fff6d319ab8 gpusLoadCurrentVertexArray + 689
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x000000012160bd1a updateDispatch + 1213
9 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x000000012160b830 gldUpdateDispatch + 154
10 GLEngine 0x00007fff5ee55b33 gleDoDrawDispatchCoreGL3 + 601
11 GLEngine 0x00007fff5ee06d07 gleDrawArraysOrElements_Entries_Body + 119
12 GLEngine 0x00007fff5ee036f7 glDrawElementsInstanced_GL3Exec + 233
13 _ctypes.cpython-37m-darwin.so 0x00000001132adda7 ffi_call_unix64 + 79
14 _ctypes.cpython-37m-darwin.so 0x00000001132ae635 ffi_call + 901
15 _ctypes.cpython-37m-darwin.so 0x00000001132a8ee4 _ctypes_callproc + 804
16 _ctypes.cpython-37m-darwin.so 0x00000001132a25ac PyCFuncPtr_call + 1196
17 org.python.python 0x000000010b9b23a8 PyObject_Call + 136
18 org.python.python 0x000000010ba05166 slot_tp_call + 198
19 wrapper.cpython-37m-darwin.so 0x0000000113ea9181 __Pyx_PyObject_Call + 97
20 wrapper.cpython-37m-darwin.so 0x0000000113eb628d __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 765
21 latebind.cpython-37m-darwin.so 0x0000000113f12fa1 __Pyx_PyObject_Call + 97
22 latebind.cpython-37m-darwin.so 0x0000000113f12522 __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 306
23 org.python.python 0x000000010b9b20af _PyObject_FastCallKeywords + 575
24 org.python.python 0x000000010ba8736d call_function + 765
25 org.python.python 0x000000010ba83fb7 _PyEval_EvalFrameDefault + 26567
26 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
27 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
28 org.python.python 0x000000010ba87374 call_function + 772
29 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
30 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
31 org.python.python 0x000000010ba87374 call_function + 772
32 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
33 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
34 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
35 org.python.python 0x000000010ba87374 call_function + 772
36 org.python.python 0x000000010ba7dd64 _PyEval_EvalFrameDefault + 1396
37 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
38 org.python.python 0x000000010ba87374 call_function + 772
39 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
40 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
41 org.python.python 0x000000010ba87374 call_function + 772
42 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
43 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
44 org.python.python 0x000000010ba87374 call_function + 772
45 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
46 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
47 org.python.python 0x000000010ba87374 call_function + 772
48 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
49 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
50 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
51 org.python.python 0x000000010ba87374 call_function + 772
52 org.python.python 0x000000010ba7dd64 _PyEval_EvalFrameDefault + 1396
53 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
54 org.python.python 0x000000010ba87374 call_function + 772
55 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
56 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
57 org.python.python 0x000000010ba87374 call_function + 772
58 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
59 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
60 org.python.python 0x000000010ba87374 call_function + 772
61 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
62 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
63 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
64 org.python.python 0x000000010ba87374 call_function + 772
65 org.python.python 0x000000010ba7dd64 _PyEval_EvalFrameDefault + 1396
66 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
67 org.python.python 0x000000010ba87374 call_function + 772
68 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
69 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
70 org.python.python 0x000000010ba87374 call_function + 772
71 org.python.python 0x000000010ba83f9a _PyEval_EvalFrameDefault + 26538
72 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
73 org.python.python 0x000000010ba87374 call_function + 772
74 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
75 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
76 org.python.python 0x000000010ba87374 call_function + 772
77 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
78 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
79 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
80 org.python.python 0x000000010ba87374 call_function + 772
81 org.python.python 0x000000010ba83fb7 _PyEval_EvalFrameDefault + 26567
82 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
83 org.python.python 0x000000010b9b1d47 _PyFunction_FastCallDict + 455
84 org.python.python 0x000000010b9b3253 _PyObject_Call_Prepend + 131
85 org.python.python 0x000000010b9b23a8 PyObject_Call + 136
86 sip.so 0x0000000115d97f7a call_method + 76
87 sip.so 0x0000000115d93d07 sip_api_call_procedure_method + 152
88 QtWidgets.so 0x00000001147cc9d7 sipQGraphicsView::mouseMoveEvent(QMouseEvent*) + 103
89 QtWidgets 0x0000000114cca477 QWidget::event(QEvent*) + 487
90 QtWidgets 0x0000000114d7226d QFrame::event(QEvent*) + 45
91 QtWidgets 0x0000000114fe7ef7 QGraphicsView::viewportEvent(QEvent*) + 1191
92 QtWidgets.so 0x00000001147cde50 sipQGraphicsView::viewportEvent(QEvent*) + 192
93 QtCore 0x0000000115978814 QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 148
94 QtWidgets 0x0000000114c8e6f8 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 248
95 QtWidgets 0x0000000114c91568 QApplication::notify(QObject*, QEvent*) + 7336
96 QtWidgets.so 0x000000011484e3ca sipQApplication::notify(QObject*, QEvent*) + 234
97 QtCore 0x0000000115978564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
98 QtWidgets 0x0000000114c8f030 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
99 QtWidgets 0x0000000114ce995e 0x114c7e000 + 440670
100 QtWidgets 0x0000000114ce8655 0x114c7e000 + 435797
101 QtWidgets 0x0000000114c8e70d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
102 QtWidgets 0x0000000114c8fb12 QApplication::notify(QObject*, QEvent*) + 594
103 QtWidgets.so 0x000000011484e3ca sipQApplication::notify(QObject*, QEvent*) + 234
104 QtCore 0x0000000115978564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
105 QtGui 0x0000000115263249 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961
106 QtGui 0x0000000115249f6b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
107 libqcocoa.dylib 0x000000011f64dd40 0x11f618000 + 220480
108 libqcocoa.dylib 0x000000011f64e4a8 0x11f618000 + 222376
109 com.apple.CoreFoundation 0x00007fff54849691 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
110 com.apple.CoreFoundation 0x00007fff54903c8c __CFRunLoopDoSource0 + 108
111 com.apple.CoreFoundation 0x00007fff5482c0f0 __CFRunLoopDoSources0 + 208
112 com.apple.CoreFoundation 0x00007fff5482b56d __CFRunLoopRun + 1293
113 com.apple.CoreFoundation 0x00007fff5482add3 CFRunLoopRunSpecific + 483
114 com.apple.HIToolbox 0x00007fff53b15d96 RunCurrentEventLoopInMode + 286
115 com.apple.HIToolbox 0x00007fff53b15a0f ReceiveNextEventCommon + 366
116 com.apple.HIToolbox 0x00007fff53b15884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
117 com.apple.AppKit 0x00007fff51dc2a3b _DPSNextEvent + 2085
118 com.apple.AppKit 0x00007fff52558e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
119 com.apple.AppKit 0x00007fff51db784d -[NSApplication run] + 764
120 libqcocoa.dylib 0x000000011f64d223 0x11f618000 + 217635
121 QtCore 0x0000000115973b7f QEventLoop::exec(QFlags) + 431
122 QtCore 0x0000000115978b72 QCoreApplication::exec() + 130
123 QtWidgets.so 0x000000011493d7d2 meth_QApplication_exec_(_object*, _object*) + 82
124 org.python.python 0x000000010b9b2d62 _PyMethodDef_RawFastCallKeywords + 226
125 org.python.python 0x000000010b9b2289 _PyCFunction_FastCallKeywords + 41
126 org.python.python 0x000000010ba87300 call_function + 656
127 org.python.python 0x000000010ba83fb7 _PyEval_EvalFrameDefault + 26567
128 org.python.python 0x000000010b9b2731 function_code_fastcall + 177
129 org.python.python 0x000000010ba87374 call_function + 772
130 org.python.python 0x000000010ba83fb7 _PyEval_EvalFrameDefault + 26567
131 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
132 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
133 org.python.python 0x000000010ba87374 call_function + 772
134 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
135 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
136 org.python.python 0x000000010ba7d750 PyEval_EvalCode + 48
137 org.python.python 0x000000010ba7ace7 builtin_exec + 583
138 org.python.python 0x000000010b9b2f15 _PyMethodDef_RawFastCallKeywords + 661
139 org.python.python 0x000000010b9b2289 _PyCFunction_FastCallKeywords + 41
140 org.python.python 0x000000010ba87300 call_function + 656
141 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
142 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
143 org.python.python 0x000000010b9b2249 _PyFunction_FastCallKeywords + 217
144 org.python.python 0x000000010ba87374 call_function + 772
145 org.python.python 0x000000010ba8404e _PyEval_EvalFrameDefault + 26718
146 org.python.python 0x000000010ba881cc _PyEval_EvalCodeWithName + 3276
147 org.python.python 0x000000010b9b1d47 _PyFunction_FastCallDict + 455
148 org.python.python 0x000000010bae2293 pymain_run_module + 147
149 org.python.python 0x000000010bae137c pymain_main + 5900
150 org.python.python 0x000000010badfc63 Py_Main + 51
151 edu.ucsf.cgl.ChimeraX 0x000000010b988dc8 main + 120
152 libdyld.dylib 0x00007fff7c785015 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff7c8d5a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ca9e589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.7.dylib 0x000000010d417c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff5482c405 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff5482b757 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff5482add3 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff51efffc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x0000000118761aad 0x116602000 + 34994861
5 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff7c8d6bea kevent + 10
1 QtWebEngineCore 0x0000000118a6f3f9 0x116602000 + 38196217
2 QtWebEngineCore 0x0000000118a6c70d 0x116602000 + 38184717
3 QtWebEngineCore 0x000000011882372c 0x116602000 + 35788588
4 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
5 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
6 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
7 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff7c8d6bea kevent + 10
1 QtWebEngineCore 0x0000000118a6f3f9 0x116602000 + 38196217
2 QtWebEngineCore 0x0000000118a6c70d 0x116602000 + 38184717
3 QtWebEngineCore 0x0000000118823714 0x116602000 + 35788564
4 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
5 QtWebEngineCore 0x00000001187cc4c4 0x116602000 + 35431620
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 6:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5d14 0x116602000 + 35405076
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5d14 0x116602000 + 35405076
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 8:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5d14 0x116602000 + 35405076
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 9:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5c84 0x116602000 + 35404932
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff7c8d6bea kevent + 10
1 QtWebEngineCore 0x0000000118a6f3f9 0x116602000 + 38196217
2 QtWebEngineCore 0x0000000118a6c70d 0x116602000 + 38184717
3 QtWebEngineCore 0x0000000118823714 0x116602000 + 35788564
4 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
5 QtWebEngineCore 0x00000001180f0a74 0x116602000 + 28240500
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 11:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x00000001187c576a 0x116602000 + 35403626
5 QtWebEngineCore 0x00000001187c5e0f 0x116602000 + 35405327
6 QtWebEngineCore 0x00000001187c5cb4 0x116602000 + 35404980
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 12:: CompositorTileWorker1/72963
0 libsystem_kernel.dylib 0x00007fff7c8d5a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ca9e589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011881b9f8 0x116602000 + 35756536
3 QtWebEngineCore 0x00000001197a3fe8 0x116602000 + 52043752
4 QtWebEngineCore 0x00000001187dc0e4 0x116602000 + 35496164
5 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
6 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 13:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x0000000118761aa2 0x116602000 + 34994850
4 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
5 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
6 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
7 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 14:: AudioThread
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x0000000118761aad 0x116602000 + 34994861
5 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff7c8d6bea kevent + 10
1 QtWebEngineCore 0x0000000118a6f3f9 0x116602000 + 38196217
2 QtWebEngineCore 0x0000000118a6c70d 0x116602000 + 38184717
3 QtWebEngineCore 0x000000011882372c 0x116602000 + 35788588
4 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
5 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
6 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
7 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x0000000118761aad 0x116602000 + 34994861
5 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x00000001187c576a 0x116602000 + 35403626
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5d74 0x116602000 + 35405172
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187adc7f 0x116602000 + 35306623
4 QtWebEngineCore 0x0000000118761aad 0x116602000 + 34994861
5 QtWebEngineCore 0x000000011878aad5 0x116602000 + 35162837
6 QtWebEngineCore 0x00000001187dd40c 0x116602000 + 35501068
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 19:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5c84 0x116602000 + 35404932
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 20:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff7c8cc1fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7c8cb714 mach_msg + 60
2 QtWebEngineCore 0x00000001187add7d 0x116602000 + 35306877
3 QtWebEngineCore 0x00000001187ade71 0x116602000 + 35307121
4 QtWebEngineCore 0x00000001187c5778 0x116602000 + 35403640
5 QtWebEngineCore 0x00000001187c60ab 0x116602000 + 35405995
6 QtWebEngineCore 0x00000001187c5d14 0x116602000 + 35405076
7 QtWebEngineCore 0x000000011881d167 0x116602000 + 35762535
8 libsystem_pthread.dylib 0x00007fff7ca9d661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ca9d50d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ca9cbf9 thread_start + 13
Thread 21:
0 libsystem_pthread.dylib 0x00007fff7ca9cbdc start_wqthread + 0
1 ??? 0x000200050007000c 0 + 562971428716556
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffb51b8380 rcx: 0x000000010be1da48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000004 rbp: 0x000000010be1da80 rsp: 0x000000010be1da48
r8: 0x000000010be1df48 r9: 0x0000000000000000 r10: 0x00007fffb51b83c8 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000000500000014 r14: 0x0000000000000004 r15: 0x000000000000002d
rip: 0x00007fff7c8d5b66 rfl: 0x0000000000000286 cr2: 0x000000011106900c
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10c73e000 - 0x10c74cff3 +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.93.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
0x10c79c000 - 0x10c79cff3 +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.93.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so
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0x7fff7c784000 - 0x7fff7c7a1ff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib
0x7fff7c7a2000 - 0x7fff7c7a2ffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib
0x7fff7c7a3000 - 0x7fff7c7afff3 libkxld.dylib (4570.71.82.6) /usr/lib/system/libkxld.dylib
0x7fff7c7b0000 - 0x7fff7c7b0ff7 liblaunch.dylib (1205.70.16) /usr/lib/system/liblaunch.dylib
0x7fff7c7b1000 - 0x7fff7c7b5ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib
0x7fff7c7b6000 - 0x7fff7c7b8fff libquarantine.dylib (86.70.1) /usr/lib/system/libquarantine.dylib
0x7fff7c7b9000 - 0x7fff7c7baff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib
0x7fff7c7bb000 - 0x7fff7c7d2fff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff7c7d3000 - 0x7fff7c7d3fff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff7c7d4000 - 0x7fff7c85dff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff7c85e000 - 0x7fff7c861ffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib
0x7fff7c862000 - 0x7fff7c865ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff7c866000 - 0x7fff7c867fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff7c868000 - 0x7fff7c86effb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib
0x7fff7c86f000 - 0x7fff7c8b8ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff7c8b9000 - 0x7fff7c8dfff7 libsystem_kernel.dylib (4570.71.82.6) /usr/lib/system/libsystem_kernel.dylib
0x7fff7c8e0000 - 0x7fff7c92bfcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff7c92c000 - 0x7fff7c94bff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib
0x7fff7c94c000 - 0x7fff7ca7cff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff7ca7d000 - 0x7fff7ca87ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff7ca88000 - 0x7fff7ca91ff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff7ca92000 - 0x7fff7ca99ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff7ca9a000 - 0x7fff7caa5fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff7caa6000 - 0x7fff7caa9fff libsystem_sandbox.dylib (765.70.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff7caaa000 - 0x7fff7caabff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff7caac000 - 0x7fff7cab3ff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff7cab4000 - 0x7fff7cac8ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib
0x7fff7caca000 - 0x7fff7cacfff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff7cad0000 - 0x7fff7cafdfff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 12055
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=688.7M resident=0K(0%) swapped_out_or_unallocated=688.7M(100%)
Writable regions: Total=13.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=13.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 21.3M 6
CG image 260K 20
CoreAnimation 192K 24
CoreGraphics 8K 2
CoreImage 152K 26
CoreUI image data 5560K 28
CoreUI image file 216K 5
Foundation 4K 2
Image IO 64K 2
Kernel Alloc Once 8K 2
MALLOC 8.5G 114
MALLOC guard page 48K 13
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 24K 2
OpenGL GLSL 512K 7
PROTECTED_MEMORY 4K 2
STACK GUARD 84K 22
Stack 153.7M 23
Stack Guard 56.0M 2
VM_ALLOCATE 4.4G 118
__DATA 47.1M 490
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 219.6M 139
__TEXT 469.1M 468
__UNICODE 560K 2
mapped file 80.4M 52
shared memory 776K 18
=========== ======= =======
TOTAL 13.9G 1571
TOTAL, minus reserved VM space 13.9G 1571
Log:
UCSF ChimeraX version: 0.93 (2020-04-03)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/poojasrinivas/Downloads/6xdq-assembly1.cif
Summary of feedback from opening /Users/poojasrinivas/Downloads/6xdq-
assembly1.cif
---
warnings | Atom H1 is not in the residue template for MET #1 in chain 0
Atom H1 is not in the residue template for MET #1 in chain 1
Atom H1 is not in the residue template for MET #1 in chain 2
Atom H1 is not in the residue template for MET #1 in chain 4
Atom HO5' is not in the residue template for C #1 in chain A
Atom HO5' is not in the residue template for C #1 in chain B
Atom H1 is not in the residue template for MET #1 in chain L
Atom H1 is not in the residue template for MET #1 in chain U
Atom H1 is not in the residue template for MET #1 in chain g
Atom H1 is not in the residue template for MET #1 in chain j
Atom H1 is not in the residue template for MET #1 in chain l
8 messages similar to the above omitted
6xdq-assembly1.cif title:
Cryo-EM structure of an Escherichia coli coupled transcription-translation
complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription
factors NusA and NusG, and fMet-tRNAs at P-site and E-site [more info...]
Chain information for 6xdq-assembly1.cif #1
---
Chain | Description
0 | 50S ribosomal protein L21
1 | 50S ribosomal protein L22
2 | 50S ribosomal protein L23
3 | 50S ribosomal protein L24
4 | 50S ribosomal protein L25
5 | NT DNA
6 | T DNA
7 | mRNA with 30 nt long spacer
9 | 50S ribosomal protein L10
A B | E-site and P-site tRNA (fMet)
AA | DNA-directed RNA polymerase subunit β
AB | Transcription termination/antitermination protein NusG
AC AD | DNA-directed RNA polymerase subunit α
AE | DNA-directed RNA polymerase subunit beta'
AF | DNA-directed RNA polymerase subunit ω
AG | Transcription termination/antitermination protein NusA
C | 30S ribosomal protein S18
D | 16S rRNA
E | 30S ribosomal protein S20
F | 30S ribosomal protein S21
G | 30S ribosomal protein S2
H | 30S ribosomal protein S1
I | 30S ribosomal protein S3
J | 30S ribosomal protein S4
K | 30S ribosomal protein S5
L | 30S ribosomal protein S6
M | 30S ribosomal protein S7
N | 30S ribosomal protein S8
O | 30S ribosomal protein S9
P | 30S ribosomal protein S10
Q | 30S ribosomal protein S11
R | 30S ribosomal protein S12
S | 30S ribosomal protein S14
T | 30S ribosomal protein S15
U | 30S ribosomal protein S16
V | 30S ribosomal protein S17
W | 30S ribosomal protein S19
X | 30S ribosomal protein S13
Y | 50S ribosomal protein L11
Z | 50S ribosomal protein L7/L12
a | 23S rRNA
b | 50S ribosomal protein L27
c | 50S ribosomal protein L28
d | 5S rRNA
e | 50S ribosomal protein L29
f | 50S ribosomal protein L30
g | 50S ribosomal protein L31
h | 50S ribosomal protein L2
i | 50S ribosomal protein L32
j | 50S ribosomal protein L3
k | 50S ribosomal protein L33
l | 50S ribosomal protein L4
m | 50S ribosomal protein L34
n | 50S ribosomal protein L5
o | 50S ribosomal protein L35
p | 50S ribosomal protein L6
q | 50S ribosomal protein L36
r | 50S ribosomal protein L9
s | 50S ribosomal protein L13
t | 50S ribosomal protein L14
u | 50S ribosomal protein L15
v | 50S ribosomal protein L16
w | 50S ribosomal protein L17
x | 50S ribosomal protein L18
y | 50S ribosomal protein L19
z | 50S ribosomal protein L20
Non-standard residues in 6xdq-assembly1.cif #1
---
MG — (MG)
ZN — (ZN)
OpenGL version: 4.1 INTEL-10.36.32
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in PyOpenGL-accelerate(?) |
comment:2 by , 5 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
ChimeraX crashed in Apple's OpenGL graphics driver. Unfortunately Apple's Intel graphics drivers are not very stable especially when a large amount of memory is being used. ChimeraX was using 13.9 Gbytes at the time of the crash. There is nothing we can do about Apple graphics driver bugs. Unfortunately Apple has little interest in improving OpenGL drivers (the cross-platform 3D graphics standard) because they have their own proprietary Metal graphics system.
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Reported by Pooja Srinivas