Opened 5 years ago

Closed 5 years ago

#4210 closed defect (can't reproduce)

Crash reporting cursor position

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.dev202102030836 (2021-02-03 08:36:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error

Current thread 0x0000000202e6de00 (most recent call first):
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 512 in _cursor_position
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 470 in mouse_pause_tracking
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 307 in event_loop
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 856 in init
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1005 in 
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
  File "/private/var/folders/kw/6gs1ttkj6wv61qz6jxr44pn00000gn/T/AppTranslocation/47CAF374-3722-4C6E-B49C-D2E60791AB33/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main


Process:               ChimeraX [3536]
Path:                  /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.2.0 (1.2.0.0)
Code Type:             X86-64 (Translated)
Parent Process:        ??? [1]
Responsible:           ChimeraX [3536]
User ID:               501

Date/Time:             2021-02-03 23:21:44.064 +0000
OS Version:            macOS 11.2 (20D64)
Report Version:        12
Anonymous UUID:        E1B98252-BF9F-4974-9697-8E48AA062C5B

Sleep/Wake UUID:       256749D5-C952-46BF-AE3A-96C576880C5C

Time Awake Since Boot: 15000 seconds
Time Since Wake:       9300 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x0000000149542020
Exception Note:        EXC_CORPSE_NOTIFY

VM Regions Near 0x149542020:
    VM_ALLOCATE                 1493f0000-1493f8000    [   32K] r--/r-- SM=ALI  
--> mapped file                 1493f8000-149567000    [ 1468K] r-x/rwx SM=COW  Object_id=552cd625
    mapped file                 149567000-14957f000    [   96K] rw-/rwx SM=COW  Object_id=55b9f425

Thread 0 Crashed:: CrBrowserMain  Dispatch queue: com.apple.main-thread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff20364462 __pthread_kill + 10
2   libsystem_c.dylib             	0x00007fff20274ba3 raise + 26
3   libsystem_platform.dylib      	0x00007fff203d6d7d _sigtramp + 29
4   select.cpython-38-darwin.so   	000000000000000000 0 + 0
5   ???                           	0x00006000038a9010 ???

Thread 1:: com.apple.rosetta.exceptionserver
0   runtime                       	0x00007ffdfff1a238 0x7ffdfff18000 + 8760
1   runtime                       	0x00007ffdfff24354 0x7ffdfff18000 + 50004
2   runtime                       	0x00007ffdfff251f8 0x7ffdfff18000 + 53752

Thread 2:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 3:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 4:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 5:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 6:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 7:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 8:
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000010cf6927b ???
3   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
4   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 9:: com.apple.NSEventThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   com.apple.CoreFoundation      	0x00007fff2048a50d __CFRunLoopServiceMachPort + 316
3   com.apple.CoreFoundation      	0x00007fff20488bf6 __CFRunLoopRun + 1319
4   com.apple.CoreFoundation      	0x00007fff20487fe2 CFRunLoopRunSpecific + 567
5   ???                           	0x00007fff22d637c6 ???
6   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
7   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 10:: ThreadPoolServiceThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff20366dde kevent64 + 10
2   ???                           	0x000000012ca68cc7 ???
3   ???                           	0x000000012c9f162b ???
4   ???                           	0x000000012c9b57cb ???
5   ???                           	0x000000012c9fca94 ???
6   ???                           	0x000000012ca10a7d ???
7   ???                           	0x000000012ca59e07 ???
8   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 11:: ThreadPoolBackgroundWorker
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca06778 ???
4   ???                           	0x000000012ca07150 ???
5   ???                           	0x000000012ca06c44 ???
6   ???                           	0x000000012ca59e07 ???
7   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 12:: Chrome_IOThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff20366dde kevent64 + 10
2   ???                           	0x000000012ca68cc7 ???
3   ???                           	0x000000012c9f162b ???
4   ???                           	0x000000012c9b57cb ???
5   ???                           	0x0000000130935f06 ???
6   ???                           	0x000000012ca10a7d ???
7   ???                           	0x000000012ca59e07 ???
8   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 13:: NetworkConfigWatcher
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 14:: ThreadPoolForegroundWorker
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca06778 ???
4   ???                           	0x000000012ca07150 ???
5   ???                           	0x000000012ca06cd4 ???
6   ???                           	0x000000012ca59e07 ???
7   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 15:: CompositorTileWorker1
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff203608e2 __psynch_cvwait + 10
2   ???                           	0x000000012ca55e18 ???
3   ???                           	0x000000012dd0d5f8 ???
4   ???                           	0x000000012ca59e07 ???
5   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
6   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 16:: Chrome_InProcGpuThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012c98620f ???
4   ???                           	0x000000012c9f162b ???
5   ???                           	0x000000012c9b57cb ???
6   ???                           	0x000000012ca10a7d ???
7   ???                           	0x000000012ca59e07 ???
8   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 17:: Chrome_ChildIOThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff20366dde kevent64 + 10
2   ???                           	0x000000012ca68cc7 ???
3   ???                           	0x000000012c9f162b ???
4   ???                           	0x000000012c9b57cb ???
5   ???                           	0x000000012ca10a7d ???
6   ???                           	0x000000012ca59e07 ???
7   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
8   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 18:: VizCompositorThread
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 19:: NetworkConfigWatcher
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 20:: NetworkConfigWatcher
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 21:: ThreadPoolSingleThreadForegroundBlocking0
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012ca0676a ???
5   ???                           	0x000000012ca07150 ???
6   ???                           	0x000000012ca06d34 ???
7   ???                           	0x000000012ca59e07 ???
8   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 22:: MemoryInfra
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 23:: NetworkConfigWatcher
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012c9861db ???
5   ???                           	0x000000012c9f162b ???
6   ???                           	0x000000012c9b57cb ???
7   ???                           	0x000000012ca10a7d ???
8   ???                           	0x000000012ca59e07 ???
9   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
10  libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0   ???                           	0x00007ffe963aeab8 ???
1   libsystem_kernel.dylib        	0x00007fff2035de7e mach_msg_trap + 10
2   ???                           	0x000000012ca5e492 ???
3   ???                           	0x000000012ca5e2cf ???
4   ???                           	0x000000012ca0676a ???
5   ???                           	0x000000012ca06e3d ???
6   ???                           	0x000000012ca06c74 ???
7   ???                           	0x000000012ca59e07 ???
8   libsystem_pthread.dylib       	0x00007fff20392950 _pthread_start + 224
9   libsystem_pthread.dylib       	0x00007fff2038e47b thread_start + 15

Thread 25:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 26:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 27:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 28:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 29:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 30:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 31:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 32:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 33:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 34:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 35:
0   runtime                       	0x00007ffdfff7299c 0x7ffdfff18000 + 371100

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x0000000202e6de00  rcx: 0x0000000000000000  rdx: 0x0000000000000000
  rdi: 0xfb90a6f05e5782c2  rsi: 0x000000011d190088  rbp: 0xfb90a6f05e5782c2  rsp: 0x000000011d190088
   r8: 0x000000000000000a   r9: 0xfb90a6f05e5782c2  r10: 0x0000000202e6de00  r11: 0x00007fff20274b89
  r12: 0x0000000000000203  r13: 0x0000000000000003  r14: 0x000000000000000a  r15: 0x0000000000000016
  rip:   rfl: 0x0000000000000283


Binary Images:
                 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
       0x202d96000 -        0x202e31fff  dyld (832.7.3)  /usr/lib/dyld
    0x7ffdfff18000 -     0x7ffdfff8bfff +runtime (203.30)  /Library/Apple/*/runtime
    0x7fff200c6000 -     0x7fff200c7fff  libsystem_blocks.dylib (78)  /usr/lib/system/libsystem_blocks.dylib
    0x7fff200c8000 -     0x7fff200fdfff  libxpc.dylib (2038.80.3)  /usr/lib/system/libxpc.dylib
    0x7fff200fe000 -     0x7fff20115fff  libsystem_trace.dylib (1277.80.2)  /usr/lib/system/libsystem_trace.dylib
    0x7fff20116000 -     0x7fff201b5fff  libcorecrypto.dylib (1000.80.5)  /usr/lib/system/libcorecrypto.dylib
    0x7fff201b6000 -     0x7fff201e2fff  libsystem_malloc.dylib (317.40.8)  /usr/lib/system/libsystem_malloc.dylib
    0x7fff201e3000 -     0x7fff20227fff  libdispatch.dylib (1271.40.12)  /usr/lib/system/libdispatch.dylib
    0x7fff20228000 -     0x7fff20261fff  libobjc.A.dylib (818.2)  /usr/lib/libobjc.A.dylib
    0x7fff20262000 -     0x7fff20264fff  libsystem_featureflags.dylib (28.60.1)  /usr/lib/system/libsystem_featureflags.dylib
    0x7fff20265000 -     0x7fff202edfff  libsystem_c.dylib (1439.40.11)  /usr/lib/system/libsystem_c.dylib
    0x7fff202ee000 -     0x7fff20343fff  libc++.1.dylib (904.4)  /usr/lib/libc++.1.dylib
    0x7fff20344000 -     0x7fff2035cfff  libc++abi.dylib (904.4)  /usr/lib/libc++abi.dylib
    0x7fff2035d000 -     0x7fff2038bfff  libsystem_kernel.dylib (7195.81.3)  /usr/lib/system/libsystem_kernel.dylib
    0x7fff2038c000 -     0x7fff20397fff  libsystem_pthread.dylib (454.80.2)  /usr/lib/system/libsystem_pthread.dylib
    0x7fff20398000 -     0x7fff203d2fff  libdyld.dylib (832.7.3)  /usr/lib/system/libdyld.dylib
    0x7fff203d3000 -     0x7fff203dcfff  libsystem_platform.dylib (254.80.2)  /usr/lib/system/libsystem_platform.dylib
    0x7fff203dd000 -     0x7fff20408fff  libsystem_info.dylib (542.40.3)  /usr/lib/system/libsystem_info.dylib
    0x7fff20409000 -     0x7fff208a4fff  com.apple.CoreFoundation (6.9 - 1774.101)  /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
    0x7fff224ca000 -     0x7fff2272bfff  libicucore.A.dylib (66109)  /usr/lib/libicucore.A.dylib
    0x7fff2272c000 -     0x7fff22735fff  libsystem_darwin.dylib (1439.40.11)  /usr/lib/system/libsystem_darwin.dylib
    0x7fff22b47000 -     0x7fff22b52fff  libsystem_notify.dylib (279.40.4)  /usr/lib/system/libsystem_notify.dylib
    0x7fff24aa3000 -     0x7fff24ab1fff  libsystem_networkextension.dylib (1295.80.3)  /usr/lib/system/libsystem_networkextension.dylib
    0x7fff24b0f000 -     0x7fff24b25fff  libsystem_asl.dylib (385)  /usr/lib/system/libsystem_asl.dylib
    0x7fff2623d000 -     0x7fff26244fff  libsystem_symptoms.dylib (1431.40.36)  /usr/lib/system/libsystem_symptoms.dylib
    0x7fff2856f000 -     0x7fff2857ffff  libsystem_containermanager.dylib (318.80.2)  /usr/lib/system/libsystem_containermanager.dylib
    0x7fff29283000 -     0x7fff29286fff  libsystem_configuration.dylib (1109.60.2)  /usr/lib/system/libsystem_configuration.dylib
    0x7fff29287000 -     0x7fff2928bfff  libsystem_sandbox.dylib (1441.60.4)  /usr/lib/system/libsystem_sandbox.dylib
    0x7fff29e96000 -     0x7fff29e98fff  libquarantine.dylib (119.40.2)  /usr/lib/system/libquarantine.dylib
    0x7fff2a40b000 -     0x7fff2a418fff  libbz2.1.0.dylib (44)  /usr/lib/libbz2.1.0.dylib
    0x7fff2a419000 -     0x7fff2a41dfff  libsystem_coreservices.dylib (127)  /usr/lib/system/libsystem_coreservices.dylib
    0x7fff2a621000 -     0x7fff2a633fff  libz.1.dylib (76)  /usr/lib/libz.1.dylib
    0x7fff2a634000 -     0x7fff2a67ffff  libsystem_m.dylib (3186.40.2)  /usr/lib/system/libsystem_m.dylib
    0x7fff2a681000 -     0x7fff2a686fff  libmacho.dylib (973.4)  /usr/lib/system/libmacho.dylib
    0x7fff2a6a3000 -     0x7fff2a6aefff  libcommonCrypto.dylib (60178.40.2)  /usr/lib/system/libcommonCrypto.dylib
    0x7fff2a6af000 -     0x7fff2a6b9fff  libunwind.dylib (200.10)  /usr/lib/system/libunwind.dylib
    0x7fff2a6ba000 -     0x7fff2a6c1fff  liboah.dylib (203.30)  /usr/lib/liboah.dylib
    0x7fff2a6c2000 -     0x7fff2a6ccfff  libcopyfile.dylib (173.40.2)  /usr/lib/system/libcopyfile.dylib
    0x7fff2a6cd000 -     0x7fff2a6d4fff  libcompiler_rt.dylib (102.2)  /usr/lib/system/libcompiler_rt.dylib
    0x7fff2a6d5000 -     0x7fff2a6d7fff  libsystem_collections.dylib (1439.40.11)  /usr/lib/system/libsystem_collections.dylib
    0x7fff2a6d8000 -     0x7fff2a6dafff  libsystem_secinit.dylib (87.60.1)  /usr/lib/system/libsystem_secinit.dylib
    0x7fff2a6db000 -     0x7fff2a6ddfff  libremovefile.dylib (49.40.3)  /usr/lib/system/libremovefile.dylib
    0x7fff2a6de000 -     0x7fff2a6defff  libkeymgr.dylib (31)  /usr/lib/system/libkeymgr.dylib
    0x7fff2a6df000 -     0x7fff2a6e6fff  libsystem_dnssd.dylib (1310.80.1)  /usr/lib/system/libsystem_dnssd.dylib
    0x7fff2a6e7000 -     0x7fff2a6ecfff  libcache.dylib (83)  /usr/lib/system/libcache.dylib
    0x7fff2a6ed000 -     0x7fff2a6eefff  libSystem.B.dylib (1292.60.1)  /usr/lib/libSystem.B.dylib
    0x7fff2a6ef000 -     0x7fff2a6f2fff  libfakelink.dylib (3)  /usr/lib/libfakelink.dylib
    0x7fff2a6f3000 -     0x7fff2a6f3fff  com.apple.SoftLinking (1.0 - 1)  /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
    0x7fff2dc82000 -     0x7fff2dc82fff  liblaunch.dylib (2038.80.3)  /usr/lib/system/liblaunch.dylib
    0x7fff30136000 -     0x7fff30136fff  libsystem_product_info_filter.dylib (8.40.1)  /usr/lib/system/libsystem_product_info_filter.dylib

Translated Code Information:
  tmp0: 0xffffffffffffffff tmp1: 0x00007ffe963aea8c tmp2: 0x00007fff20364458


External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 10991
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=518.5M resident=0K(0%) swapped_out_or_unallocated=518.5M(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               384K        3 
Activity Tracing                   256K        1 
CG backing stores                 1152K        6 
CG image                            88K       22 
CoreAnimation                      104K       19 
CoreGraphics                        12K        2 
CoreUI image data                 1816K       26 
Foundation                          16K        1 
Kernel Alloc Once                  336K        3 
MALLOC                           363.2M       70 
MALLOC guard page                  192K        8 
MALLOC_MEDIUM (reserved)         896.0M        8         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
Mach message                        24K        6 
OpenGL GLSL                        384K        4 
Rosetta Arena                     2048K        1 
Rosetta Generic                   1728K      429 
Rosetta IndirectBranch            2048K        1 
Rosetta JIT                      128.0M        1 
Rosetta Return Stack               680K       68 
Rosetta Thread Context             680K       68 
STACK GUARD                         44K       11 
Stack                            137.6M       35 
Stack Guard                       56.1M       24 
VM_ALLOCATE                       98.7M      186 
VM_ALLOCATE (reserved)           160.0M        8         reserved VM address space (unallocated)
__DATA                             489K       51 
__DATA_CONST                      2987K       40 
__DATA_DIRTY                        95K       23 
__LINKEDIT                       506.0M        5 
__OBJC_RO                         60.5M        1 
__OBJC_RW                         2449K        2 
__TEXT                            12.5M       50 
__UNICODE                          588K        1 
dylib                             2088K       23 
dylib (reserved)                    96K        7         reserved VM address space (unallocated)
mapped file                        5.2G      870 
shared memory                     2932K       25 
unshared pmap                     10.3M        6 
===========                     =======  ======= 
TOTAL                              8.0G     2116 
TOTAL, minus reserved VM space     6.6G     2116 



Log:
UCSF ChimeraX version: 1.2.dev202102030836 (2021-02-03)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 71.0.7
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: Mac mini
      Model Identifier: Macmini9,1
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 4 MB
      Memory: 8 GB

Software:

    System Software Overview:

      System Version: macOS 11.2 (20D64)
      Kernel Version: Darwin 20.3.0
      Time since boot: 4:20

Graphics/Displays:

    Apple M1:

      Chipset Model: Apple M1
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        LG FULL HD:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.11.1
    ChimeraX-AtomicLibrary: 1.2.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.4
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202102030836
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.6
    ChimeraX-uniprot: 2.1
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    flake8: 3.8.3
    flake8-polyfill: 1.0.2
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    mccabe: 0.6.1
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.2
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pep8: 1.7.1
    pep8-naming: 0.10.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 20.3.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.14
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycodestyle: 2.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    pyflakes: 2.2.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 22.0.2
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0

Change History (2)

comment:1 by Eric Pettersen, 5 years ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash reporting cursor position

comment:2 by Tom Goddard, 5 years ago

Resolution: → can't reproduce
Status: assigned → closed

Python traceback makes it look like the crash was in QCursor.pos(). That seems highly unlikely to crash. But crash report shows crash in

select.cpython-38-darwin.so

the Python select module. That also seems strange. But maybe the Python select was dispatching after file input became available and the callback handling file input crashed.

Not enough info. Cool to see the Python traceback!

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