Timeline
Oct 6, 2025:
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9:40 PM
Ticket #19053 (H-Bonds: no bisectors) created by chimerax-bug-report@…
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[…]
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8:46 PM
Ticket #19052 (glClear: invalid framebuffer operation) created by pujanajmera1@…
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[…]
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7:30 PM
Ticket #19051 (Make Boltz add an mmCIF table that says it is a Boltz prediction) created by Tom Goddard
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This will help the PAE error plot tool choose an initial structure …
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7:28 PM
Ticket #19049 (AlphaFold error plot tool does not suggest PAE file) closed by Tom Goddard
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fixed: Fixed.
The code was only showing the file suggestion if it recognizes …
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7:19 PM
Ticket #19050 (Cannot write output file to current directory) created by chimerax-bug-report@…
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[…]
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7:11 PM
Ticket #19049 (AlphaFold error plot tool does not suggest PAE file) created by goddard@…
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[…]
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6:57 PM
Ticket #19048 (boltz predict protein option treats DNA chains as protein sequences) closed by Tom Goddard
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fixed: Fixed.
Made boltz predict protein/dna/rna options filter out chains …
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6:33 PM
Ticket #19048 (boltz predict protein option treats DNA chains as protein sequences) created by goddard@…
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[…]
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5:39 PM
Ticket #19047 (alphafold contacts command says no PAE data open when Boltz Error Plot ...) closed by Tom Goddard
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fixed: Fixed.
The alphafold pae command set the structure.alphafold_pae …
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5:35 PM
Ticket #19047 (alphafold contacts command says no PAE data open when Boltz Error Plot ...) created by goddard@…
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[…]
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5:34 PM
Ticket #8961 (ViewDockX suggestions) closed by Eric Pettersen
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fixed: Fixed by re-implemented ViewDock
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3:50 PM
Dev2025-10-6 edited by Tom Goddard
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(diff)
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3:02 PM
Dev2025-10-6 edited by Tom Goddard
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(diff)
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2:53 PM
Ticket #19040 (Web services down) closed by Eric Pettersen
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fixed: Web services are working again.
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2:45 PM
Ticket #19046 (Crash on Mac waking from sleep) closed by Eric Pettersen
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duplicate
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2:43 PM
Ticket #19043 ('pip install pyKVFinder' fails with empty error message) closed by Eric Pettersen
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can't reproduce: Hi Juliana,
Thanks for reporting this problem. It's usually been our …
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2:33 PM
Ticket #19046 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
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2:27 PM
Ticket #19042 (Crash in event loop) closed by Eric Pettersen
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can't reproduce
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2:12 PM
Ticket #19030 (File history unreadable) closed by Tom Goddard
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can't reproduce: The most likely cause of the ChimeraX file history being corrupted is …
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2:07 PM
Ticket #19014 (Crash gathering Linux info for bug reporter) closed by Greg Couch
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nonchimerax: ChimeraX is not finding the Nvidia graphics driver. If you haven't …
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1:50 PM
Ticket #19045 (Document info about checking web service/queue status) created by Eric Pettersen
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There is already a "Get info about a cxservices web job" link on the …
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1:46 PM
Ticket #19044 (Automatic notification of death of job workers) created by Eric Pettersen
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Need some automated task that runs every so often (5 minutes? 10 …
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1:26 PM
Ticket #19039 (Crash creating QWebEngineProfile) closed by Eric Pettersen
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can't reproduce
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1:25 PM
Ticket #19038 (ffmpeg: Permission Denied) closed by Eric Pettersen
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duplicate
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1:20 PM
Ticket #19036 (Crash in OpenGL swap buffers after status line expose event) closed by Eric Pettersen
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duplicate: Didn't get screened out despite being anonymous.
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1:19 PM
Ticket #19035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Eric Pettersen
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can't reproduce
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1:16 PM
Ticket #19034 (ffmpeg: Permission Denied) closed by Eric Pettersen
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duplicate: Hi Arvind,
Thanks for reporting this problem. It is fixed in the …
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1:15 PM
Ticket #19033 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
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duplicate: Duplicate of #18238
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1:14 PM
Ticket #19032 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
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duplicate: Duplicate of #18238
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1:13 PM
Ticket #19031 (Crash after opening 12 sequences) closed by Eric Pettersen
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can't reproduce: No obvious error
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12:42 PM
Ticket #19025 (Crash drawing graphics after resize) closed by Tom Goddard
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can't reproduce: The Python stack trace shows a Qt ResizeEvent was dispatched which …
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12:06 PM
Ticket #19028 (Crash using open/save dialog) closed by Eric Pettersen
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can't reproduce
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12:01 PM
Ticket #19043 ('pip install pyKVFinder' fails with empty error message) created by juligonz@…
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[…]
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11:59 AM
Ticket #19027 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
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duplicate: Duplicate of #18238
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11:56 AM
Ticket #19026 (Session restore: invalid load key) closed by Eric Pettersen
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limitation: Version 1.1!
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11:41 AM
Ticket #19021 (Didn't find section 'Peptide bond' in tab 'ISOLDE') closed by Eric Pettersen
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limitation
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11:36 AM
Ticket #19042 (Crash in event loop) created by chimerax-bug-report@…
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[…]
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11:36 AM
Ticket #19024 (Crash on Mac waking from sleep) closed by Eric Pettersen
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duplicate
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11:31 AM
Ticket #19023 (ffmpeg: Permission Denied) closed by Eric Pettersen
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duplicate
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11:31 AM
Ticket #19022 (ffmpeg: Permission Denied) closed by Eric Pettersen
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duplicate
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11:25 AM
Ticket #19020 (Various ViewDockX errors) closed by Eric Pettersen
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can't reproduce: Well, the Mol2 file needs to end with .mol2, not .mol2.txt. And the …
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11:20 AM
Ticket #19019 (Bad DCD file) closed by Eric Pettersen
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nonchimerax: Many follow-on errors after the bad DCD file. Perhaps if this happens …
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11:17 AM
Ticket #19018 (Bad DCD file) closed by Eric Pettersen
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nonchimerax
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11:12 AM
Ticket #19016 (Scalebar: invalid literal for int() with base 10) closed by Eric Pettersen
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duplicate: Duplicate of #16649
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11:07 AM
Ticket #19015 (Crash using open/save dialog) closed by Eric Pettersen
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can't reproduce
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10:35 AM
Ticket #19041 (chirality command incorrectly says S atom of ligand SAM is non-chiral) created by goddard@…
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[…]
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5:24 AM
Ticket #19040 (Web services down) created by lukas.bauer@…
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[…]
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5:02 AM
Ticket #19039 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
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[…]
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4:36 AM
Ticket #19038 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
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[…]
Oct 5, 2025:
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11:37 PM
Ticket #19037 (SEQCROW: job.scratch_dir is None) created by chimerax-bug-report@…
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[…]
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2:21 PM
Ticket #19036 (Crash in OpenGL swap buffers after status line expose event) created by chimerax-bug-report@…
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[…]
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2:57 AM
Ticket #19035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
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[…]
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2:07 AM
Ticket #19034 (ffmpeg: Permission Denied) created by angrish.arvind@…
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[…]
Oct 4, 2025:
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7:13 PM
Ticket #19033 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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[…]
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6:53 PM
Ticket #19032 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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[…]
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3:52 PM
Ticket #19031 (Crash after opening 12 sequences) created by chimerax-bug-report@…
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[…]
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6:23 AM
Ticket #19030 (File history unreadable) created by 070.arungs@…
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[…]
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3:36 AM
Ticket #19029 (ArtiaX: SuperQt slider tick interval: 'float' object cannot be ...) created by chimerax-bug-report@…
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[…]
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2:50 AM
Ticket #19028 (Crash using open/save dialog) created by chimerax-bug-report@…
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[…]
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1:40 AM
Ticket #19027 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
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[…]
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12:29 AM
Ticket #19026 (Session restore: invalid load key) created by chimerax-bug-report@…
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[…]
Oct 3, 2025:
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10:31 PM
Ticket #19025 (Crash drawing graphics after resize) created by chimerax-bug-report@…
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[…]
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6:53 PM
Ticket #19024 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
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4:25 PM
Ticket #19023 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
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[…]
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3:06 PM
Ticket #19022 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
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[…]
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9:33 AM
Ticket #19021 (Didn't find section 'Peptide bond' in tab 'ISOLDE') created by chimerax-bug-report@…
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[…]
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7:40 AM
Ticket #19020 (Various ViewDockX errors) created by chimerax-bug-report@…
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[…]
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7:25 AM
Ticket #19019 (Bad DCD file) created by chimerax-bug-report@…
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[…]
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7:24 AM
Ticket #19018 (Bad DCD file) created by chimerax-bug-report@…
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[…]
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6:16 AM
Ticket #19017 (isolde sim start: OpenMMException: Error compiling kernel) created by chimerax-bug-report@…
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[…]
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5:20 AM
Ticket #19016 (Scalebar: invalid literal for int() with base 10) created by chimerax-bug-report@…
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[…]
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12:21 AM
Ticket #19015 (Crash using open/save dialog) created by chimerax-bug-report@…
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[…]
Oct 2, 2025:
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9:36 PM
Ticket #19014 (Crash gathering Linux info for bug reporter) created by neha@…
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[…]
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2:22 PM
Ticket #9387 (ESPALOMA-based parameter estimation) closed by Eric Pettersen
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fixed: Minimization has been implemented via Antechamber+OpenMM rather than …
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12:07 PM
2025-10-2 edited by Tom Goddard
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(diff)
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11:59 AM
Dev2025-10-6 edited by Tom Goddard
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(diff)
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11:59 AM
DeveloperMeetings edited by Tom Goddard
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(diff)
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10:04 AM
Ticket #19011 ('NoneType' object has no attribute 'image_colors') closed by Zach Pearson
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duplicate: Use the daily build.
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10:02 AM
Ticket #19007 (Crash during Boltz prediction) closed by Tom Goddard
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nonchimerax: This ChimeraX crash was probably caused by graphics driver problems. …
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9:58 AM
Ticket #19006 (Crash on Mac waking from sleep) closed by Tom Goddard
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duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit that …
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8:46 AM
Ticket #19012 (Crash moving between screens) closed by Eric Pettersen
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duplicate
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8:43 AM
Ticket #19010 (ffmpeg: Permission denied) closed by Eric Pettersen
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duplicate: Hi Sean,
Thanks for reporting this problem. It is fixed in the …
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8:39 AM
Ticket #19009 (Crash showing main graphics window) closed by Eric Pettersen
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limitation: version 1.4; remote display
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8:37 AM
Ticket #19008 (Unknown crash) closed by Eric Pettersen
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can't reproduce
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6:02 AM
Ticket #19013 (HtmlView: session and view must be set) created by chimerax-bug-report@…
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[…]
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5:47 AM
Ticket #19012 (Crash moving between screens) created by chimerax-bug-report@…
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[…]
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5:05 AM
Ticket #19011 ('NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…
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[…]
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4:11 AM
Ticket #19010 (ffmpeg: Permission denied) created by sean@…
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[…]
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1:12 AM
Ticket #19009 (Crash showing main graphics window) created by chimerax-bug-report@…
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[…]
Oct 1, 2025:
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5:30 PM
Ticket #19008 (Unknown crash) created by chimerax-bug-report@…
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[…]
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3:42 PM
Ticket #18601 (Chimera Not Using Graphics Card) closed by Greg Couch
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nonchimerax
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3:31 PM
Ticket #19007 (Crash during Boltz prediction) created by jszot@…
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[…]
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12:53 PM
ChangeLog edited by Elaine Meng
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(diff)
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11:47 AM
ChangeLog edited by Eric Pettersen
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(diff)
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11:47 AM
ChangeLog edited by Eric Pettersen
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(diff)
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10:40 AM
Ticket #19005 (GPU failure after large image save) closed by Tom Goddard
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nonchimerax: Lots of problems with an external display and GPU. The GPU is an …
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10:37 AM
Ticket #19006 (Crash on Mac waking from sleep) created by gotla.suhas@…
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[…]
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9:34 AM
Ticket #19005 (GPU failure after large image save) created by chimerax-bug-report@…
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[…]
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9:30 AM
Ticket #19004 (Crash on exit) closed by Eric Pettersen
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duplicate: From before the crash-on-exit workaround went in.
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9:17 AM
Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by Eric Pettersen
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duplicate: Duplicate of #18731
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9:05 AM
Ticket #19001 (Crash on Mac waking from sleep) closed by Eric Pettersen
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duplicate
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7:06 AM
Ticket #19004 (Crash on exit) created by chimerax-bug-report@…
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[…]
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5:47 AM
Ticket #19003 (isolde sim start: OpenMMException: Error compiling kernel) created by ash@…
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[…]
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5:19 AM
Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by chimerax-bug-report@…
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[…]
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3:20 AM
Ticket #19001 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
Sep 30, 2025:
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6:07 PM
Ticket #18992 (Re-saving flipped map → empty file) closed by Tom Goddard
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fixed: Fixed.
There was already code to avoid overwriting a volume file with …
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3:49 PM
Ticket #18864 (Text shown as question marks on MacOS Tahoe) closed by Tom Goddard
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nonchimerax: Glad that fixed it.
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1:42 PM
Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') closed by Zach Pearson
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fixed: As of tomorrow's daily build, BlobOutlineBoxes are no longer …
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1:10 PM
Ticket #19000 (Inadequate OpenGL) closed by Eric Pettersen
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limitation
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1:08 PM
Ticket #18999 (Crash creating sequence viewer for FASTA file) closed by Eric Pettersen
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can't reproduce
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1:06 PM
Ticket #18998 (Crash in graphics driver during Qt drawing) closed by Eric Pettersen
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can't reproduce
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12:05 PM
Ticket #18996 (Crash creating QWebEngineProfile) closed by Eric Pettersen
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can't reproduce
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12:03 PM
Ticket #18995 (Crash moving window between screens) closed by Eric Pettersen
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duplicate
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11:36 AM
Dev2025-10-6 created by Tom Goddard
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11:35 AM
Dev2025-9-29 edited by Tom Goddard
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(diff)
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11:35 AM
2025-10-2 created by Tom Goddard
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11:34 AM
2025-9-25 edited by Tom Goddard
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(diff)
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11:34 AM
2025-9-25 edited by Tom Goddard
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(diff)
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11:31 AM
DeveloperMeetings edited by Tom Goddard
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(diff)
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11:07 AM
Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') closed by Zach Pearson
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can't reproduce: User probably tried opening a DICOM file that has no image data. There …
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11:01 AM
Ticket #18993 (Crash in event loop) closed by Eric Pettersen
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can't reproduce
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10:57 AM
Ticket #18991 (ffmpeg: Permission denied) closed by Eric Pettersen
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duplicate
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10:55 AM
Ticket #18990 (Crash calling some object's finalizer) closed by Eric Pettersen
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can't reproduce
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10:48 AM
Ticket #17721 (DICOM: Cancer Imaging Archive timeout) closed by Zach Pearson
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nonchimerax: We can't control TCIA's availability, but it would be good to catch …
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10:47 AM
Ticket #18079 (Setting 'display' attribute of closed segmentation cursor) closed by Zach Pearson
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fixed: This ticket should be fixed by the same fix from #18556 and others. …
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10:41 AM
Ticket #18895 (Render By Attribute menu ownership) closed by Eric Pettersen
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duplicate: Duplicate of #18610
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10:04 AM
Ticket #18894 (Crash using open/save dialog) closed by Eric Pettersen
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can't reproduce
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9:56 AM
Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by Eric Pettersen
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duplicate: Duplicate of #18630
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9:55 AM
Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by Eric Pettersen
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duplicate: Duplicate of #18630
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9:54 AM
Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by Eric Pettersen
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duplicate: Duplicate of #18630
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9:49 AM
Ticket #18890 (Crash in event loop) closed by Eric Pettersen
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can't reproduce
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9:43 AM
Ticket #18889 (Crash in garbage collection) closed by Eric Pettersen
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duplicate
-
9:42 AM
Ticket #18888 ('pip install pyKVFinder' fails with empty error message) closed by Eric Pettersen
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duplicate: Still waiting for this to be reported in the daily build.
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8:58 AM
Ticket #19000 (Inadequate OpenGL) created by chimerax-bug-report@…
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[…]
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4:38 AM
Ticket #18999 (Crash creating sequence viewer for FASTA file) created by chimerax-bug-report@…
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[…]
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12:05 AM
Ticket #18998 (Crash in graphics driver during Qt drawing) created by chimerax-bug-report@…
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[…]
Sep 29, 2025:
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7:25 PM
Dev2025-9-29 edited by Tom Goddard
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(diff)
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7:17 PM
DeveloperMeetings edited by Tom Goddard
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(diff)
-
6:05 PM
Ticket #18997 (QScore: scores is None) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18996 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18995 (Crash moving window between screens) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18994 (Alignment observer not in list) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18993 (Crash in event loop) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18992 (Re-saving flipped map → empty file) created by Tristan Croll
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[…]
-
6:05 PM
Ticket #18991 (ffmpeg: Permission denied) created by chimerax-bug-report@…
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[…]
-
6:05 PM
Ticket #18990 (Crash calling some object's finalizer) created by chimerax-bug-report@…
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[…]
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6:05 PM
Ticket #18989 (glClear: invalid framebuffer operation) created by cindy@…
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[…]
-
6:05 PM
Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') created by chimerax-bug-report@…
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[…]
Sep 27, 2025:
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5:10 PM
Ticket #18895 (Render By Attribute menu ownership) created by chimerax-bug-report@…
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[…]
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1:03 PM
Ticket #18894 (Crash using open/save dialog) created by chimerax-bug-report@…
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[…]
-
12:29 PM
Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
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[…]
-
7:45 AM
Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
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[…]
-
4:01 AM
Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
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[…]
-
3:56 AM
Ticket #18890 (Crash in event loop) created by chimerax-bug-report@…
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[…]
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2:56 AM
Ticket #18889 (Crash in garbage collection) created by chimerax-bug-report@…
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[…]
Sep 26, 2025:
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8:33 PM
Ticket #18888 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
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[…]
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7:25 PM
Ticket #18887 (Crash in event loop) created by arshadkhanbaloch214@…
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[…]
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3:26 PM
Ticket #18668 ('NoneType' object has no attribute 'image_colors') closed by Zach Pearson
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fixed
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3:24 PM
Ticket #18753 (Closing segmentation cursors: self._positions is None) closed by Zach Pearson
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fixed: If you accidentally close a segmentation cursor, but the tool is open …
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2:54 PM
Ticket #18760 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
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fixed: Use 1.10.1
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2:54 PM
Ticket #18781 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by Zach Pearson
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duplicate: Same resolution as #18854.
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2:53 PM
Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) closed by Zach Pearson
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fixed: I have added a test for None in the offending function.
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2:06 PM
Ticket #18885 (ffmpeg permission error) closed by Tom Goddard
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duplicate
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1:58 PM
Ticket #18886 (Associated structure with profile grid sequence is slow) created by goddard@…
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[…]
paired.fasta
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12:37 PM
Ticket #18885 (ffmpeg permission error) created by najeebullah09201@…
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[…]
chimerax 1.10 bug 20250926.docx
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9:45 AM
Ticket #18884 (Crash on Mac waking from sleep) closed by Eric Pettersen
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duplicate
-
9:45 AM
Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) closed by Eric Pettersen
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limitation
-
9:43 AM
Ticket #18882 (Crash on Mac waking from sleep) closed by Eric Pettersen
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duplicate
-
9:42 AM
Ticket #18881 (Crash in garbage collection) closed by Eric Pettersen
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duplicate
-
7:07 AM
Ticket #18884 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
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5:51 AM
Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) created by chimerax-bug-report@…
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[…]
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3:57 AM
Ticket #18882 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
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1:09 AM
Ticket #18881 (Crash in garbage collection) created by chimerax-bug-report@…
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[…]
Sep 25, 2025:
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5:48 PM
Ticket #18870 (Crash at startup) closed by Greg Couch
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nonchimerax: Try running ChimeraX directly on your computer instead of remotely on …
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4:42 PM
Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by Eric Pettersen
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duplicate: Duplicate of #18630
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4:26 PM
Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen
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duplicate
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4:25 PM
Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen
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duplicate
-
1:53 PM
Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) created by chimerax-bug-report@…
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[…]
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1:40 PM
Ticket #18879 (Scenes tool: using Delete leaves name filled in and Update button) created by Elaine Meng
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should clear name and change Update to Save because when you delete …
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1:34 PM
Ticket #18878 (Somehow model.overall_color is being saved/restored) created by Elaine Meng
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[…]
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1:25 PM
Ticket #18874 (Crash in swap_buffers) closed by Tom Goddard
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can't reproduce: A lot going on in the crash stack trace. It appears a display was …
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12:49 PM
Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
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[…]
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12:37 PM
Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
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[…]
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10:58 AM
Ticket #18875 (Scenes involving deleted atoms needs better error handling) created by Elaine Meng
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[…]
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10:50 AM
Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen
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duplicate
-
10:45 AM
Ticket #18874 (Crash in swap_buffers) created by chimerax-bug-report@…
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[…]
-
10:28 AM
Ticket #18871 (Crash at startup) closed by Eric Pettersen
-
duplicate: Duplicate of #18870
-
10:25 AM
Ticket #18851 (OpenMM compiler failure on Windows) closed by Eric Pettersen
-
duplicate: Continued in #18869
-
10:21 AM
Ticket #18868 (Crash in python_instances_of_class) closed by Eric Pettersen
-
duplicate
-
10:20 AM
Ticket #18867 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce: Crash in QAccessible-related code, so some similarity to the other …
-
10:15 AM
Ticket #18866 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
8:30 AM
Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
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[…]
-
7:37 AM
Ticket #18872 (File→Open "copy location" does not paste into command line on Ubuntu) created by Tristan Croll
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[…]
-
4:02 AM
Ticket #18871 (Crash at startup) created by neha@…
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[…]
-
3:03 AM
Ticket #18870 (Crash at startup) created by neha@…
-
[…]
Sep 24, 2025:
-
10:12 PM
Ticket #18869 (OpenMM compiler failure on Windows) created by cwa5555@…
-
[…]
10mer_2.pdb
-
6:32 PM
Ticket #18868 (Crash in python_instances_of_class) created by chimerax-bug-report@…
-
[…]
-
6:14 PM
Ticket #18867 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
6:11 PM
Ticket #18866 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
1:04 PM
Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) closed by Tom Goddard
-
fixed: Done.
Example
open 7pkz fetchEmdbMap true
I added an option …
-
12:35 PM
Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) created by Samuel.Haysom@…
-
Begin forwarded message:
From: Samuel Haysom via ChimeraX-users …
-
10:57 AM
Ticket #18864 (Text shown as question marks on MacOS Tahoe) created by gunnar@…
-
[…]
Screen shot.pdf
-
10:51 AM
Ticket #18863 (Number_Entry widget: could not convert string to float: '') closed by Tom Goddard
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fixed: Fixed.
Needed to change the scalebar code which was looking for a …
-
10:43 AM
Ticket #18859 (Crash drawing Side View) closed by Tom Goddard
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nonchimerax
-
9:21 AM
Ticket #18863 (Number_Entry widget: could not convert string to float: '') created by chimerax-bug-report@…
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[…]
-
9:06 AM
Ticket #18862 (Molecular Dynamics Viewer: list index out of range) closed by Eric Pettersen
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limitation: Hi Abdul,
The Molecular Dynamics viewer does not work with a series …
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8:44 AM
Ticket #18861 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
8:44 AM
Ticket #18860 (Crash destroying tool window) closed by Eric Pettersen
-
can't reproduce
-
8:40 AM
Ticket #18858 (Crash on Mac waking from sleep) closed by Eric Pettersen
-
duplicate
-
8:37 AM
Ticket #18857 (Crash on Mac waking from sleep) closed by Eric Pettersen
-
duplicate
-
8:36 AM
Ticket #18856 (ffmpeg: Permission denied) closed by Eric Pettersen
-
duplicate
-
8:34 AM
Ticket #18855 (Crash on Mac waking from sleep) closed by Eric Pettersen
-
duplicate
-
7:33 AM
Ticket #18862 (Molecular Dynamics Viewer: list index out of range) created by abdul.samad@…
-
[…]
-
6:23 AM
Ticket #18861 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
4:30 AM
Ticket #18860 (Crash destroying tool window) created by chimerax-bug-report@…
-
[…]
Sep 23, 2025:
-
8:51 PM
Ticket #18859 (Crash drawing Side View) created by chimerax-bug-report@…
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[…]
-
7:42 PM
Ticket #18858 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
-
[…]
-
6:05 PM
Ticket #18857 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
-
3:01 PM
Ticket #18856 (ffmpeg: Permission denied) created by chimerax-bug-report@…
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[…]
-
2:23 PM
Ticket #18855 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
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[…]
-
2:12 PM
Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) created by chimerax-bug-report@…
-
[…]
-
1:23 PM
Ticket #18852 (Boltz install fails on Windows because git is not available) closed by Tom Goddard
-
fixed: Fixed in Sept 24, 2025 daily build.
Can pip install from github using …
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12:57 PM
Ticket #18853 (Windows build from scratch has become very slow) created by Tom Goddard
-
I just made a ChimeraX build on Windows on vizvault.cgl.ucsf.edu and …
-
11:18 AM
Ticket #18850 (Error downloading Boltz parameters) closed by Tom Goddard
-
nonchimerax: This error means Boltz installation failed to get the chemical …
-
11:12 AM
Ticket #18852 (Boltz install fails on Windows because git is not available) created by goddard@…
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[…]
-
10:34 AM
Ticket #18847 (Crash during Boltz prediction) closed by Tom Goddard
-
nonchimerax: The Log shows the following error before ChimeraX crashed
Invalid …
-
10:22 AM
Dev2025-9-29 created by Tom Goddard
-
10:22 AM
2025-9-25 created by Tom Goddard
-
10:21 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
9:29 AM
Ticket #18844 (OpenMM compiler failure on Windows) closed by Eric Pettersen
-
duplicate: Duplicate of #18851, but that ticket has the input file attached.
-
9:21 AM
Ticket #18849 (ffmpeg: Permission denied) closed by Eric Pettersen
-
duplicate
-
9:17 AM
Ticket #18848 (Crash on Mac waking from sleep) closed by Eric Pettersen
-
duplicate
-
9:11 AM
Ticket #18846 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce: Possibly while using Render By Attribute
-
9:08 AM
Ticket #18845 (Crash installing pyKVFinder from PyPi) closed by Eric Pettersen
-
can't reproduce
-
7:51 AM
Ticket #18851 (OpenMM compiler failure on Windows) created by cwa5555@…
-
[…]
10mer_2.pdb
-
6:28 AM
Ticket #18850 (Error downloading Boltz parameters) created by lvwei.aca@…
-
[…]
-
12:50 AM
Ticket #18849 (ffmpeg: Permission denied) created by chimerax-bug-report@…
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[…]
-
12:43 AM
Ticket #18848 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
-
[…]
-
12:27 AM
Ticket #18847 (Crash during Boltz prediction) created by petr@…
-
[…]
Sep 22, 2025:
-
5:56 PM
Ticket #18846 (Crash in event loop) created by chimerax-bug-report@…
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[…]
-
5:28 PM
Ticket #18845 (Crash installing pyKVFinder from PyPi) created by chimerax-bug-report@…
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[…]
-
5:26 PM
Dev2025-9-22 edited by Tom Goddard
-
(diff)
-
4:17 PM
Ticket #18844 (OpenMM compiler failure on Windows) created by cwa5555@…
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[…]
-
3:02 PM
Dev2025-9-22 edited by Tom Goddard
-
(diff)
-
11:32 AM
Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) closed by Tom Goddard
-
can't reproduce: No Log so hard to know what the user was doing.
-
11:27 AM
Ticket #18832 (ArrayMemoryError hiding atoms) closed by Tom Goddard
-
limitation: Opened 480,000 atom 7pkz rat liver vault structure and showed …
-
11:17 AM
Ticket #18843 (Molecular Dynamics Viewer: list index out of range) closed by Eric Pettersen
-
limitation
-
11:15 AM
Ticket #18842 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce: YA allocation/deallocation crash
-
11:12 AM
Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) closed by Eric Pettersen
-
can't reproduce
-
11:05 AM
Ticket #18840 (Can't save session because NewerVersionQuery not listed) closed by Eric Pettersen
-
duplicate
-
10:57 AM
Ticket #18839 (MemoryError opening mmCIF files) closed by Eric Pettersen
-
duplicate
-
10:56 AM
Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
-
duplicate: Duplicate of #18238
-
10:43 AM
Ticket #18837 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce: Again some kind of memory allocation/deallocation problem
-
10:42 AM
Ticket #18836 (Crash using save dialog) closed by Eric Pettersen
-
can't reproduce: Some kind of memory allocation/deallocation problem while save dialog …
-
10:37 AM
Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by Eric Pettersen
-
duplicate: Duplicate of #18804
-
10:26 AM
Ticket #18833 (ffmpeg: Permission Denied) closed by Eric Pettersen
-
duplicate
-
10:24 AM
Ticket #18831 (AddH: more than 2 coplanar positions specified) closed by Eric Pettersen
-
not a bug
-
10:23 AM
Ticket #18830 (Alignment headers somehow being directly saved in sessions) closed by Eric Pettersen
-
duplicate: Duplicate of #5560
-
10:18 AM
Ticket #18829 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce: Looks like some kind of memory allocation/deallocation problem.
-
10:15 AM
Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
-
duplicate: Duplicate of #18238
-
9:04 AM
Ticket #18843 (Molecular Dynamics Viewer: list index out of range) created by chimerax-bug-report@…
-
[…]
-
5:07 AM
Ticket #18842 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
4:40 AM
Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) created by chimerax-bug-report@…
-
[…]
-
3:49 AM
Ticket #18840 (Can't save session because NewerVersionQuery not listed) created by chimerax-bug-report@…
-
[…]
Sep 21, 2025:
-
10:44 PM
Ticket #18839 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
-
[…]
-
9:27 PM
Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
-
[…]
-
9:13 PM
Ticket #18837 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
5:52 PM
Ticket #18836 (Crash using save dialog) created by chimerax-bug-report@…
-
[…]
-
6:32 AM
Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by chimerax-bug-report@…
-
[…]
Sep 20, 2025:
-
8:08 AM
Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) created by chimerax-bug-report@…
-
[…]
-
7:49 AM
Ticket #18833 (ffmpeg: Permission Denied) created by chimerax-bug-report@…
-
[…]
-
2:37 AM
Ticket #18832 (ArrayMemoryError hiding atoms) created by chimerax-bug-report@…
-
[…]
Sep 19, 2025:
-
10:27 PM
Ticket #18831 (AddH: more than 2 coplanar positions specified) created by chimerax-bug-report@…
-
[…]
-
8:28 PM
Ticket #18830 (Alignment headers somehow being directly saved in sessions) created by chimerax-bug-report@…
-
[…]
-
8:27 PM
Ticket #18829 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
8:22 PM
Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
-
[…]
-
6:12 PM
Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) closed by Tom Goddard
-
fixed: Done.
Added maxSpacing option. It applies to all output formats …
-
6:11 PM
Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) created by Tom Goddard
-
It is sometimes useful to restrict predictions of dimers to sequences …
-
5:53 PM
Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) closed by Tom Goddard
-
fixed: Done.
I added an outputYaml option (default false) and an …
-
5:46 PM
Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) created by Tom Goddard
-
The alphafold dimers and monomers commands currently can write out …
-
4:28 PM
Ticket #18825 (Crash opening .cif file) created by thien@…
-
[…]
-
12:54 PM
Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by Tom Goddard
-
nonchimerax
-
12:54 PM
Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) reopened by Tom Goddard
-
12:54 PM
Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by Tom Goddard
-
not a bug: Computer did not have OpenGL 3.3 support as it said at the beginning …
-
12:51 PM
Ticket #18822 (Crash creating QWebEngineProfile) closed by Tom Goddard
-
can't reproduce: Seems like a Qt bug.
-
9:10 AM
Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) created by chimerax-bug-report@…
-
[…]
-
9:00 AM
Ticket #18821 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
8:51 AM
Ticket #18820 (session.warning should be session.logger.warning) closed by Eric Pettersen
-
fixed
-
8:16 AM
Ticket #18823 (SEQCROW: reading ORCA output: could not convert string to float: 'DampErr') created by chimerax-bug-report@…
-
[…]
Sep 18, 2025:
-
9:22 PM
Ticket #18822 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
-
[…]
-
8:10 PM
Ticket #18821 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
6:02 PM
Ticket #18820 (session.warning should be session.logger.warning) created by chimerax-bug-report@…
-
[…]
-
5:33 PM
Ticket #18815 (Crash on Mac waking from sleep) closed by Tom Goddard
-
duplicate
-
5:17 PM
Ticket #18819 (Improve Mac crash dump formatting of stack trace) created by Tom Goddard
-
The Mac crash dumps are hard to read in Trac because the "threads" key …
-
3:19 PM
Ticket #18804 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by Eric Pettersen
-
fixed: Hi Kathe,
Thanks for reporting this problem. I have committed a fix, …
-
3:18 PM
Ticket #18809 (Various DLL load failures) closed by Greg Couch
-
can't reproduce: Looks like a corrupt installation.
-
2:32 PM
Ticket #18818 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen
-
duplicate
-
2:20 PM
2025-9-19 edited by Tom Goddard
-
(diff)
-
2:11 PM
Ticket #18177 (ffmpeg permission denied, Mac, ChimeraX 1.10) closed by Zach Pearson
-
fixed: Use 1.10.1
-
2:10 PM
Ticket #18709 (ffmpeg: Permission Denied) closed by Zach Pearson
-
duplicate
-
2:06 PM
Ticket #18799 (ffmpeg: Permission denied) closed by Zach Pearson
-
duplicate: Use 1.10.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}