Opened 3 weeks ago
Closed 3 weeks ago
#18999 closed defect (can't reproduce)
Crash creating sequence viewer for FASTA file
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sequence | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: macOS-14.7.7-arm64-arm-64bit ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000002008c0f80 (most recent call first): File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 2297 in _layout_line File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 2348 in layout_lines File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1652 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ File "/Applications/ChimeraX-1.10.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seq_view/seq_canvas.py", line 1657 in __init__ ... Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, chimerax.surface._surface, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, 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"deploymentId" : 400000009 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/lue81154/Downloads/cryosparc_P1_J293_002_volume_map_sharp.mrc Opened cryosparc_P1_J293_002_volume_map_sharp.mrc as #1, grid size 256,256,256, pixel 0.825, shown at level 0.129, step 1, values float32 > surface dust #1 size 8.25 > volume #1 level 0.04414 > surface dust #1 size 8.25 > set bgColor white > volume #1 color #5249e0 > volume #1 color #ff7e79 > volume #1 color #7a81ff > volume #1 color #93f79e > volume #1 color #91999f > lighting flat > lighting full > lighting soft > volume #1 color #7a9f77 > volume #1 color #8cb688 > volume #1 level 0.02799 > surface dust #1 size 8.25 > volume #1 level 0.2258 > volume #1 level 0.1281 > volume #1 level 0.05658 > surface dust #1 size 8.25 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 0 atomic models, 1 maps. > open "/Users/lue81154/Library/CloudStorage/OneDrive- > DiamondLightSourceLtd/-DATA-EXPERIMENTS/Part II - SatBC- > MsmK/fold_satbc_msmk/fold_satbc_msmk_model_0.cif" Chain information for fold_satbc_msmk_model_0.cif #2 --- Chain | Description A B | . C | . D | . Computing secondary structure > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 4.975e-05, steps = 2000 shifted from previous position = 5.47 rotated from previous position = 6.78 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.99302503 0.04562548 -0.10871796 1.52316334 -0.04613111 0.99893310 -0.00213899 -0.01219094 0.10850438 0.00713935 0.99407033 -4.96204129 Axis 0.03931678 -0.92047576 -0.38881688 Axis point 39.15170121 0.00000000 10.77495349 Rotation angle (degrees) 6.77637961 Shift along axis 2.00043278 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.177e-05, steps = 2000 shifted from previous position = 2.38 rotated from previous position = 6.22 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98453975 0.05470475 -0.16639973 2.60570171 -0.04027753 0.99522804 0.08887556 -1.90477708 0.17046760 -0.08079935 0.98204494 -4.00582795 Axis -0.43622582 -0.86606925 -0.24419476 Axis point 23.19703237 0.00000000 17.41329869 Rotation angle (degrees) 11.21438317 Shift along axis 1.49119668 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.224e-05, steps = 872 shifted from previous position = 0.321 rotated from previous position = 0.295 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98488529 0.05827305 -0.16311105 2.43057972 -0.04432879 0.99514575 0.08786287 -1.70544267 0.16743930 -0.07930434 0.98268759 -3.84834079 Axis -0.43491921 -0.85999339 -0.26693940 Axis point 22.41492126 0.00000000 16.65548097 Rotation angle (degrees) 11.08014550 Shift along axis 1.43683738 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.039e-05, steps = 2000 shifted from previous position = 0.739 rotated from previous position = 0.655 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98659771 0.05683128 -0.15295479 1.91589777 -0.04297338 0.99479130 0.09243138 -1.98792582 0.15741109 -0.08461961 0.98390105 -3.43738878 Axis -0.47723679 -0.83658395 -0.26902110 Axis point 20.60741837 0.00000000 15.94162423 Rotation angle (degrees) 10.69004922 Shift along axis 1.67346002 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.063e-05, steps = 2000 shifted from previous position = 0.997 rotated from previous position = 0.96 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98451929 0.05725520 -0.16566115 2.41458466 -0.04413743 0.99566994 0.08181235 -1.55752934 0.16962801 -0.07323398 0.98278335 -4.14179098 Axis -0.40475220 -0.87528051 -0.26468792 Axis point 23.72589514 0.00000000 15.97981300 Rotation angle (degrees) 11.04222732 Shift along axis 1.48224864 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.238e-05, steps = 500 shifted from previous position = 0.33 rotated from previous position = 0.372 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98495493 0.05847519 -0.16261744 2.41080790 -0.04462826 0.99516090 0.08753920 -1.69835768 0.16694939 -0.07896483 0.98279828 -3.85217705 Axis -0.43432321 -0.85967005 -0.26894377 Axis point 22.45194350 0.00000000 16.61778061 Rotation angle (degrees) 11.05096972 Shift along axis 1.44897644 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.1e-05, steps = 2000 shifted from previous position = 0.0994 rotated from previous position = 0.194 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98527448 0.05589453 -0.16158588 2.48814393 -0.04185789 0.99515123 0.08900535 -1.74740667 0.16577730 -0.08093105 0.98283674 -3.82943659 Axis -0.44535350 -0.85792298 -0.25618045 Axis point 22.75067453 0.00000000 17.10657923 Rotation angle (degrees) 10.99878708 Shift along axis 1.37206351 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 5.977e-05, steps = 2000 shifted from previous position = 0.174 rotated from previous position = 0.484 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98433654 0.05369553 -0.16792368 2.59331881 -0.04005117 0.99569319 0.08361208 -1.60841353 0.17169006 -0.07557688 0.98224776 -3.80223730 Axis -0.41175625 -0.87844082 -0.24248407 Axis point 22.06169163 0.00000000 16.49247704 Rotation angle (degrees) 11.14571471 Shift along axis 1.26706285 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.12e-05, steps = 2000 shifted from previous position = 0.404 rotated from previous position = 0.384 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98456380 0.05763632 -0.16526399 2.37545344 -0.04492401 0.99580961 0.07965587 -1.50705225 0.16916254 -0.07100196 0.98302734 -4.12463264 Axis -0.39556841 -0.87807299 -0.26928322 Axis point 23.58389214 0.00000000 15.74766558 Rotation angle (degrees) 10.97800107 Shift along axis 1.49434190 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.12e-05, steps = 2000 shifted from previous position = 0.228 rotated from previous position = 0.432 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98531643 0.05987235 -0.15989633 2.26636707 -0.04672524 0.99530559 0.08475576 -1.57529909 0.16422023 -0.07604005 0.98348850 -3.95163605 Axis -0.42630286 -0.85929984 -0.28261219 Axis point 23.08944222 0.00000000 16.06421392 Rotation angle (degrees) 10.87070809 Shift along axis 1.50427602 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.212e-05, steps = 2000 shifted from previous position = 0.215 rotated from previous position = 0.245 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98516780 0.06289516 -0.15965152 2.08101835 -0.05020908 0.99534278 0.08229095 -1.47893362 0.16408369 -0.07305443 0.98373756 -3.96524820 Axis -0.41263741 -0.85992428 -0.30043403 Axis point 22.72209833 0.00000000 15.07043993 Rotation angle (degrees) 10.84978264 Shift along axis 1.60436040 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.224e-05, steps = 372 shifted from previous position = 0.447 rotated from previous position = 0.504 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98487570 0.05822839 -0.16318487 2.43345926 -0.04426570 0.99514237 0.08793295 -1.70883975 0.16751237 -0.07937954 0.98266907 -3.84749506 Axis -0.43511518 -0.86001580 -0.26654756 Axis point 22.40712271 0.00000000 16.66538286 Rotation angle (degrees) 11.08483908 Shift along axis 1.43633455 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.003e-05, steps = 2000 shifted from previous position = 0.392 rotated from previous position = 0.406 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98581683 0.05677119 -0.15793100 2.51529865 -0.04253113 0.99483823 0.09213035 -1.89522981 0.16234615 -0.08410667 0.98314282 -3.52933818 Axis -0.46523713 -0.84547973 -0.26214202 Axis point 21.41705519 0.00000000 18.00171785 Rotation angle (degrees) 10.91809645 Shift along axis 1.35735589 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.226e-05, steps = 1160 shifted from previous position = 0.389 rotated from previous position = 0.403 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98489937 0.05842320 -0.16297229 2.42714509 -0.04448713 0.99513626 0.08789038 -1.70049515 0.16731447 -0.07931301 0.98270815 -3.83710349 Axis -0.43515873 -0.85959478 -0.26783146 Axis point 22.35977329 0.00000000 16.64813934 Rotation angle (degrees) 11.07639730 Shift along axis 1.43324040 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.073e-05, steps = 2000 shifted from previous position = 0.349 rotated from previous position = 0.555 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98591762 0.06186005 -0.15536983 2.14771284 -0.04924152 0.99526569 0.08379428 -1.53110205 0.15981778 -0.07496361 0.98429606 -3.94126668 Axis -0.42908971 -0.85188686 -0.30028455 Axis point 23.29398875 0.00000000 16.03751858 Rotation angle (degrees) 10.66077201 Shift along axis 1.56626572 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.25e-05, steps = 2000 shifted from previous position = 0.19 rotated from previous position = 0.161 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98548863 0.06257374 -0.15778685 1.96390432 -0.04995222 0.99531941 0.08272877 -1.52608331 0.16222497 -0.07364646 0.98400166 -3.88317571 Axis -0.41864437 -0.85672872 -0.30125204 Axis point 22.32156915 0.00000000 14.78498469 Rotation angle (degrees) 10.76398309 Shift along axis 1.65507653 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.231e-05, steps = 1980 shifted from previous position = 0.506 rotated from previous position = 0.516 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98491014 0.05838088 -0.16292236 2.42304272 -0.04443505 0.99513163 0.08796910 -1.71233231 0.16726491 -0.07940220 0.98270939 -3.84461396 Axis -0.43563844 -0.85942013 -0.26761201 Axis point 22.39578540 0.00000000 16.66161983 Rotation angle (degrees) 11.07529730 Shift along axis 1.44490720 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.221e-05, steps = 828 shifted from previous position = 0.0196 rotated from previous position = 0.0173 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98488645 0.05839488 -0.16306050 2.42793825 -0.04448262 0.99515267 0.08770664 -1.69399693 0.16739171 -0.07912772 0.98270994 -3.84845241 Axis -0.43422875 -0.86008570 -0.26776480 Axis point 22.41573434 0.00000000 16.62870925 Rotation angle (degrees) 11.07561062 Shift along axis 1.43318204 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.228e-05, steps = 1408 shifted from previous position = 0.0186 rotated from previous position = 0.0322 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98494952 0.05860953 -0.16260186 2.41307180 -0.04476890 0.99515647 0.08751771 -1.68689768 0.16694367 -0.07892102 0.98280277 -3.84237201 Axis -0.43412188 -0.85955308 -0.26964180 Axis point 22.40334840 0.00000000 16.60721509 Rotation angle (degrees) 11.05176906 Shift along axis 1.43847495 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.224e-05, steps = 792 shifted from previous position = 0.0381 rotated from previous position = 0.0568 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98486844 0.05818892 -0.16324278 2.43851702 -0.04420035 0.99513453 0.08805455 -1.71246401 0.16757232 -0.07950676 0.98264856 -3.84735483 Axis -0.43555638 -0.85991585 -0.26614915 Axis point 22.40909379 0.00000000 16.68808419 Rotation angle (degrees) 11.09014506 Shift along axis 1.43443353 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.154e-05, steps = 2000 shifted from previous position = 0.349 rotated from previous position = 0.31 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98480142 0.05471131 -0.16484182 2.40675128 -0.04000967 0.99502629 0.09122448 -2.04394925 0.16901296 -0.08324273 0.98209229 -3.78464540 Axis -0.44917187 -0.85952065 -0.24386241 Axis point 21.88071147 0.00000000 16.93920045 Rotation angle (degrees) 11.19856983 Shift along axis 1.59870438 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.223e-05, steps = 1940 shifted from previous position = 0.364 rotated from previous position = 0.336 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98490009 0.05836762 -0.16298785 2.42384054 -0.04445897 0.99515268 0.08771852 -1.69764645 0.16731772 -0.07914770 0.98272093 -3.85133116 Axis -0.43445405 -0.85998585 -0.26772002 Axis point 22.43417492 0.00000000 16.62592670 Rotation angle (degrees) 11.07193484 Shift along axis 1.43798303 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 6.042e-05, steps = 2000 shifted from previous position = 0.3 rotated from previous position = 0.374 degrees atoms outside contour = 11098, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98531585 0.06191452 -0.15912031 2.25291691 -0.04888632 0.99522113 0.08452831 -1.48060285 0.16359342 -0.07550828 0.98363392 -3.77284246 Axis -0.42464413 -0.85629477 -0.29400107 Axis point 22.10131782 0.00000000 15.90951618 Rotation angle (degrees) 10.86153218 Shift along axis 1.42036425 > transparency 50 > transparency 0 > ui mousemode right select > select clear > select /D:274 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 82 atoms, 82 bonds, 11 residues, 1 model selected > select up 2199 atoms, 2261 bonds, 279 residues, 1 model selected > select up 11098 atoms, 11364 bonds, 1397 residues, 1 model selected > ui mousemode right "translate selected models" > view matrix models > #2,0.98532,0.061915,-0.15912,89.871,-0.048886,0.99522,0.084528,69.504,0.16359,-0.075508,0.98363,105.21 > view matrix models > #2,0.98532,0.061915,-0.15912,113.37,-0.048886,0.99522,0.084528,93.421,0.16359,-0.075508,0.98363,114.31 > ui mousemode right select > select clear > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 208 shifted from previous position = 5.86 rotated from previous position = 10.6 degrees atoms outside contour = 7641, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97937155 0.06933339 -0.18980053 112.80532812 -0.08833111 0.99169052 -0.09352826 92.18899772 0.18173875 0.10836421 0.97735778 120.16103059 Axis 0.44737028 -0.82328796 -0.34936625 Axis point -431.89302090 0.00000000 800.17153571 Rotation angle (degrees) 13.04072584 Shift along axis -67.41254830 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 64 shifted from previous position = 0.00155 rotated from previous position = 0.0042 degrees atoms outside contour = 7644, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97936601 0.06933179 -0.18982971 112.80488507 -0.08832052 0.99169767 -0.09346238 92.18986644 0.18177376 0.10829974 0.97735841 120.16233998 Axis 0.44709108 -0.82344789 -0.34934673 Axis point -431.75505163 0.00000000 800.05128098 Rotation angle (degrees) 13.04044059 Shift along axis -67.45781466 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 44 shifted from previous position = 0.0157 rotated from previous position = 0.0177 degrees atoms outside contour = 7643, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97938965 0.06939069 -0.18968616 112.81105326 -0.08841073 0.99166593 -0.09371358 92.17699091 0.18160246 0.10855240 0.97736223 120.16914907 Axis 0.44818919 -0.82271646 -0.34966281 Axis point -432.33462837 0.00000000 800.70071251 Rotation angle (degrees) 13.04098480 Shift along axis -67.29351451 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 40 shifted from previous position = 0.0128 rotated from previous position = 0.0146 degrees atoms outside contour = 7643, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97937062 0.06932128 -0.18980975 112.80655664 -0.08831815 0.99169255 -0.09351892 92.18784590 0.18175006 0.10835333 0.97735688 120.16377198 Axis 0.44732638 -0.82333509 -0.34931138 Axis point -431.89847105 0.00000000 800.13135195 Rotation angle (degrees) 13.04069946 Shift along axis -67.41471289 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 100 shifted from previous position = 0.0124 rotated from previous position = 0.013 degrees atoms outside contour = 7643, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97938770 0.06938174 -0.18969953 112.81097495 -0.08839944 0.99166883 -0.09369354 92.17758102 0.18161849 0.10853163 0.97736156 120.16949011 Axis 0.44809994 -0.82278374 -0.34961888 Axis point -432.29682656 0.00000000 800.64006032 Rotation angle (degrees) 13.04095007 Shift along axis -67.30514681 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03484, steps = 40 shifted from previous position = 0.0134 rotated from previous position = 0.014 degrees atoms outside contour = 7643, contour level = 0.056583 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.97936934 0.06932504 -0.18981502 112.80607418 -0.08831896 0.99169430 -0.09349964 92.18858762 0.18175660 0.10833495 0.97735770 120.16341053 Axis 0.44724841 -0.82337134 -0.34932578 Axis point -431.85372088 0.00000000 800.11130854 Rotation angle (degrees) 13.04053684 Shift along axis -67.42928026 > volume #1 level 0.09233 > select clear > select #2 11098 atoms, 11364 bonds, 1397 residues, 1 model selected > ui mousemode right "translate selected models" > view matrix models > #2,0.97937,0.069325,-0.18982,112.04,-0.088319,0.99169,-0.0935,107.68,0.18176,0.10833,0.97736,111.73 > volume #1 level 0.07326 > volume #1 level 0.0542 > view matrix models > #2,0.97937,0.069325,-0.18982,99.918,-0.088319,0.99169,-0.0935,103.63,0.18176,0.10833,0.97736,124.26 > ui mousemode right select > select clear > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.03674, steps = 340 shifted from previous position = 14.1 rotated from previous position = 8.6 degrees atoms outside contour = 7486, contour level = 0.0542 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.96331238 0.02941717 -0.26676559 111.02289505 -0.08949008 0.97229758 -0.21593734 100.96010841 0.25302327 0.23188799 0.93925885 116.26684344 Axis 0.64312794 -0.74647573 -0.17076429 Axis point -319.20522822 0.00000000 517.49881252 Rotation angle (degrees) 20.37493161 Shift along axis -23.81656931 > volume #1 level 0.19 > select #2 11098 atoms, 11364 bonds, 1397 residues, 1 model selected > ui mousemode right "rotate selected models" > view matrix models > #2,0.1466,0.98681,0.068601,107.57,-0.811,0.080195,0.57952,95.636,0.56638,-0.14059,0.81207,117.58 > ui mousemode right "translate selected models" > view matrix models > #2,0.1466,0.98681,0.068601,105.39,-0.811,0.080195,0.57952,104.58,0.56638,-0.14059,0.81207,119.66 > ui mousemode right select > select clear > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 11098 atoms average map value = 0.04474, steps = 276 shifted from previous position = 4.33 rotated from previous position = 15.7 degrees atoms outside contour = 9893, contour level = 0.19002 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.04001344 0.99131990 -0.12523491 108.01215903 -0.83874460 0.03479515 0.54341218 107.12887042 0.54305287 0.12678389 0.83007194 121.08926906 Axis -0.20911755 -0.33543259 -0.91856128 Axis point 65.24582338 -4.69877707 0.00000000 Rotation angle (degrees) 95.02400898 Shift along axis -169.74966695 Drag select of 21 residues > delete sel Drag select of 6 residues Drag select of 21 residues > delete sel > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 10704 atoms average map value = 0.04627, steps = 84 shifted from previous position = 0.0736 rotated from previous position = 0.144 degrees atoms outside contour = 9507, contour level = 0.19002 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.04053584 0.99106331 -0.12708408 107.96193853 -0.83789379 0.03557242 0.54467292 107.18957168 0.54432604 0.12856173 0.82896384 121.11219110 Axis -0.20886589 -0.33701250 -0.91804009 Axis point 65.10837813 -4.77916232 0.00000000 Rotation angle (degrees) 95.04854692 Shift along axis -169.85963937 > volume #1 level 0.08518 > surface dust #1 size 8.25 > volume #1 level 0.03514 > surface dust #1 size 8.25 > volume #1 level 0.1066 > transparency 50 > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > graphics silhouettes false > lighting soft > lighting simple > volume style surface > transparency 0 > volume #1 color #c0a1bf > set color model #2 black Expected a keyword > color model #2 black Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color bymodel #2 black Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 10704 atoms average map value = 0.04627, steps = 136 shifted from previous position = 0.00633 rotated from previous position = 0.00339 degrees atoms outside contour = 8074, contour level = 0.10662 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.04051584 0.99106725 -0.12705968 107.96693449 -0.83786679 0.03558213 0.54471382 107.19256472 0.54436909 0.12852863 0.82894070 121.11516649 Axis -0.20890298 -0.33702177 -0.91802825 Axis point 65.10762210 -4.77817623 0.00000000 Rotation angle (degrees) 95.04835791 Shift along axis -169.86798640 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 10704 atoms average map value = 0.04627, steps = 60 shifted from previous position = 0.0113 rotated from previous position = 0.0144 degrees atoms outside contour = 8080, contour level = 0.10662 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.04048358 0.99108005 -0.12697017 107.96731452 -0.83799243 0.03553029 0.54452391 107.18145286 0.54417807 0.12844432 0.82907918 121.11931011 Axis -0.20884887 -0.33687918 -0.91809290 Axis point 65.12036569 -4.77928495 0.00000000 Rotation angle (degrees) 95.04493851 Shift along axis -169.85482968 > fitmap #2 inMap #1 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) using 10704 atoms average map value = 0.04627, steps = 120 shifted from previous position = 0.00693 rotated from previous position = 0.00746 degrees atoms outside contour = 8078, contour level = 0.10662 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation -0.04052830 0.99106584 -0.12706673 107.96436291 -0.83795290 0.03555524 0.54458310 107.18215524 0.54423560 0.12854696 0.82902551 121.11310864 Axis -0.20882774 -0.33695762 -0.91806892 Axis point 65.11454376 -4.78377176 0.00000000 Rotation angle (degrees) 95.04705048 Shift along axis -169.85197815 > volume #1 level 0.1829 > lighting full > lighting soft > lighting full > lighting shadows false > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > volume #1 level 0.2687 Drag select of 2 residues > volume #1 level 0.2091 > open /Users/lue81154/Downloads/cryosparc_P1_J293_002_volume_map.mrc Opened cryosparc_P1_J293_002_volume_map.mrc as #3, grid size 256,256,256, pixel 0.825, shown at level 0.0698, step 1, values float32 > surface dust #3 size 8.25 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 128 shifted from previous position = 0.395 rotated from previous position = 0.744 degrees atoms outside contour = 8390, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04822578 0.99145979 -0.12116832 108.04086104 -0.83279945 0.02706425 0.55291284 106.89122864 0.55147018 0.12757356 0.82438197 121.34784791 Axis -0.21370655 -0.33795904 -0.91657689 Axis point 64.23463281 -4.32153914 0.00000000 Rotation angle (degrees) 95.64645420 Shift along axis -170.43853014 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 76 shifted from previous position = 0.00392 rotated from previous position = 0.00754 degrees atoms outside contour = 8393, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04818901 0.99146413 -0.12114745 108.04029347 -0.83286906 0.02706716 0.55280783 106.88714561 0.55136825 0.12753923 0.82445546 121.34873633 Axis -0.21366984 -0.33789545 -0.91660890 Axis point 64.24231364 -4.32315146 0.00000000 Rotation angle (degrees) 95.64319657 Shift along axis -170.43096304 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 56 shifted from previous position = 0.00494 rotated from previous position = 0.00414 degrees atoms outside contour = 8393, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04816147 0.99146541 -0.12114790 108.04334748 -0.83290696 0.02708161 0.55275002 106.88951389 0.55131340 0.12752619 0.82449415 121.35159795 Axis -0.21364649 -0.33786676 -0.91662491 Axis point 64.24938114 -4.32445947 0.00000000 Rotation angle (degrees) 95.64087409 Shift along axis -170.43139390 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 48 shifted from previous position = 0.00551 rotated from previous position = 0.00893 degrees atoms outside contour = 8389, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04820688 0.99146297 -0.12114984 108.04354484 -0.83282297 0.02706426 0.55287740 106.89523084 0.55143630 0.12754887 0.82440845 121.35021150 Axis -0.21370067 -0.33793197 -0.91658824 Axis point 64.24045409 -4.31989443 0.00000000 Rotation angle (degrees) 95.64514789 Shift along axis -170.44047125 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 60 shifted from previous position = 0.00252 rotated from previous position = 0.00386 degrees atoms outside contour = 8389, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04822228 0.99145798 -0.12118447 108.04194820 -0.83279272 0.02707773 0.55292231 106.89354245 0.55148064 0.12758472 0.82437324 121.35113099 Axis -0.21370562 -0.33797227 -0.91657223 Axis point 64.23424051 -4.32241658 0.00000000 Rotation angle (degrees) 95.64621704 Shift along axis -170.44330163 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 60 shifted from previous position = 0.0135 rotated from previous position = 0.0195 degrees atoms outside contour = 8395, contour level = 0.069838 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04814012 0.99147575 -0.12107170 108.04511403 -0.83296370 0.02704381 0.55266637 106.87930692 0.55122954 0.12745376 0.82456142 121.35041825 Axis -0.21364031 -0.33778549 -0.91665630 Axis point 64.25450616 -4.32531351 0.00000000 Rotation angle (degrees) 95.63941119 Shift along axis -170.42169683 > volume #3 color #ffd8c1 > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting soft > lighting full > lighting soft > volume #3 color #ffc2ea > volume #3 level 0.04236 > volume #3 level 0.08816 > volume #3 level 0.1042 > graphics silhouettes true > volume #3 level 0.07289 > volume #3 level 0.04465 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 48 shifted from previous position = 0.0122 rotated from previous position = 0.0085 degrees atoms outside contour = 6703, contour level = 0.044649 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04813338 0.99146976 -0.12112345 108.05062166 -0.83288883 0.02709560 0.55277664 106.88819918 0.55134324 0.12748938 0.82447989 121.35763839 Axis -0.21367807 -0.33786900 -0.91661673 Axis point 64.24826557 -4.32734422 0.00000000 Rotation angle (degrees) 95.64007300 Shift along axis -170.44069830 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 104 shifted from previous position = 0.00622 rotated from previous position = 0.00852 degrees atoms outside contour = 6702, contour level = 0.044649 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04812003 0.99147177 -0.12111234 108.04748386 -0.83297047 0.02708165 0.55265430 106.88236703 0.55122106 0.12747675 0.82456354 121.35748400 Axis -0.21362207 -0.33780064 -0.91665497 Axis point 64.25581316 -4.32916158 0.00000000 Rotation angle (degrees) 95.63768223 Shift along axis -170.42919991 > fitmap #2 inMap #3 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc (#3) using 10704 atoms average map value = 0.03807, steps = 60 shifted from previous position = 0.013 rotated from previous position = 0.00722 degrees atoms outside contour = 6702, contour level = 0.044649 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc (#3) coordinates: Matrix rotation and translation -0.04815980 0.99148021 -0.12102737 108.04275893 -0.83301268 0.02699137 0.55259509 106.87671027 0.55115380 0.12743020 0.82461569 121.34641748 Axis -0.21361653 -0.33772546 -0.91668397 Axis point 64.26039582 -4.32180527 0.00000000 Rotation angle (degrees) 95.63992484 Shift along axis -170.41102032 > vop gaussian #3 sdev 2.47 Opened cryosparc_P1_J293_002_volume_map.mrc gaussian as #4, grid size 256,256,256, pixel 0.825, shown at step 1, values float32 > volume #4 level 0.03309 > volume #4 level 0.07431 > volume #3 level 0.04694 > reflect #2 Unknown command: reflect #2 > reflect Unknown command: reflect > vop zflip > volume zflip Expected a density maps specifier or a keyword > vop zflip #1 > volume zflip #1 Expected a density maps specifier or a keyword > volume > volume zflip Expected a density maps specifier or a keyword > volume #1 zflip Expected a keyword > ui tool show "Show Volume Menu" > toolshed show > ui tool show "Map Coordinates" > volume flip #3 Opened cryosparc_P1_J293_002_volume_map.mrc z flip as #5, grid size 256,256,256, pixel 0.825, shown at step 1, values float32 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.03724, steps = 260 shifted from previous position = 19.5 rotated from previous position = 13.9 degrees atoms outside contour = 6862, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation -0.25095334 0.94582559 -0.20600091 109.37712155 -0.76270586 -0.06215750 0.64375167 101.56659655 0.59607230 0.31866973 0.73698535 102.95052203 Axis -0.16973581 -0.41878840 -0.89207961 Axis point 60.52754386 -8.14162985 0.00000000 Rotation angle (degrees) 106.74201072 Shift along axis -152.94018839 > select #2 10704 atoms, 10946 bonds, 1355 residues, 1 model selected > ui mousemode right "rotate selected models" > view matrix models > #2,0.54217,0.28891,0.78904,121.28,-0.82959,0.034755,0.5573,100.52,0.13358,-0.95673,0.25852,97.742 > view matrix models > #2,-0.017679,-0.99365,0.11113,114.28,-0.69251,0.092339,0.71548,102.38,-0.7212,-0.064308,-0.68974,85.416 > ui mousemode right select > select clear > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 228 shifted from previous position = 9.37 rotated from previous position = 31.3 degrees atoms outside contour = 6622, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45065228 -0.89232871 -0.02572948 108.21532117 -0.72537550 -0.38283127 0.57207570 106.45404206 -0.52032962 -0.23914369 -0.81979717 88.45472581 Axis -0.84093333 0.51271672 0.17306849 Axis point 0.00000000 100.29717673 37.43448874 Rotation angle (degrees) 151.16213046 Shift along axis -21.11237724 Drag select of 5 residues, 5 cryosparc_P1_J293_002_volume_map.mrc z flip > select clear > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.00464 rotated from previous position = 0.00825 degrees atoms outside contour = 6621, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45071298 -0.89229824 -0.02572296 108.21728572 -0.72528607 -0.38284730 0.57217836 106.45852669 -0.52040170 -0.23923171 -0.81972573 88.45609312 Axis -0.84094718 0.51268614 0.17309178 Axis point 0.00000000 100.30112085 37.43178235 Rotation angle (degrees) 151.15523490 Shift along axis -21.11418745 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.00332 rotated from previous position = 0.0015 degrees atoms outside contour = 6623, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45069969 -0.89230522 -0.02571362 108.21627302 -0.72528400 -0.38282692 0.57219462 106.45846649 -0.52041611 -0.23923826 -0.81971467 88.45287993 Axis -0.84094212 0.51269326 0.17309526 Axis point 0.00000000 100.30154181 37.42968942 Rotation angle (degrees) 151.15415791 Shift along axis -21.11231027 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 56 shifted from previous position = 0.00598 rotated from previous position = 0.00842 degrees atoms outside contour = 6618, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45071701 -0.89229707 -0.02569310 108.21695735 -0.72535728 -0.38286496 0.57207626 106.46159704 -0.52029895 -0.23920782 -0.81979792 88.45792517 Axis -0.84095244 0.51269340 0.17304471 Axis point 0.00000000 100.30030751 37.43235192 Rotation angle (degrees) 151.16033169 Shift along axis -21.11597953 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 40 shifted from previous position = 0.0122 rotated from previous position = 0.00712 degrees atoms outside contour = 6626, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45070788 -0.89229967 -0.02576281 108.21679676 -0.72528949 -0.38286927 0.57215932 106.45843508 -0.52040136 -0.23919122 -0.81973776 88.44596700 Axis -0.84094738 0.51268221 0.17310246 Axis point 0.00000000 100.29798846 37.42882166 Rotation angle (degrees) 151.15755727 Shift along axis -21.11507127 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.00904 rotated from previous position = 0.00561 degrees atoms outside contour = 6622, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45073464 -0.89228627 -0.02575873 108.21665842 -0.72523101 -0.38286680 0.57223510 106.46354839 -0.52045968 -0.23924515 -0.81968500 88.45347294 Axis -0.84095205 0.51266778 0.17312247 Axis point 0.00000000 100.30290630 37.43028649 Rotation angle (degrees) 151.15268821 Shift along axis -21.11130636 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.00955 rotated from previous position = 0.0059 degrees atoms outside contour = 6628, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45065513 -0.89232600 -0.02577343 108.21576540 -0.72528609 -0.38282124 0.57219577 106.46232878 -0.52045178 -0.23916985 -0.81971199 88.44403964 Axis -0.84092968 0.51270314 0.17312642 Axis point 0.00000000 100.30214518 37.42836566 Rotation angle (degrees) 151.15630694 Shift along axis -21.10627876 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0106 rotated from previous position = 0.00181 degrees atoms outside contour = 6623, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45063902 -0.89233488 -0.02574774 108.21699916 -0.72529921 -0.38279452 0.57219701 106.45179447 -0.52044744 -0.23917948 -0.81971193 88.44384973 Axis -0.84092408 0.51271499 0.17311854 Axis point 0.00000000 100.29873848 37.42859209 Rotation angle (degrees) 151.15567381 Shift along axis -21.11157897 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 48 shifted from previous position = 0.00277 rotated from previous position = 0.0155 degrees atoms outside contour = 6619, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45063703 -0.89233728 -0.02569914 108.21594726 -0.72545113 -0.38283118 0.57197985 106.44979121 -0.52023738 -0.23911184 -0.81986500 88.44670054 Axis -0.84093235 0.51273266 0.17302602 Axis point 0.00000000 100.29260786 37.43112172 Rotation angle (degrees) 151.16705990 Shift along axis -21.11842530 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0156 rotated from previous position = 0.0162 degrees atoms outside contour = 6624, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45066043 -0.89232385 -0.02575531 108.21602169 -0.72528289 -0.38281350 0.57220501 106.46615830 -0.52045165 -0.23919027 -0.81970611 88.44858193 Axis -0.84093048 0.51270355 0.17312134 Axis point 0.00000000 100.30531566 37.42918742 Rotation angle (degrees) 151.15518342 Shift along axis -21.10423712 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 40 shifted from previous position = 0.0043 rotated from previous position = 0.00843 degrees atoms outside contour = 6628, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45057422 -0.89236414 -0.02586736 108.21438215 -0.72528639 -0.38279989 0.57220967 106.46489946 -0.52052141 -0.23906168 -0.81969932 88.44448858 Axis -0.84090621 0.51272323 0.17318092 Axis point 0.00000000 100.30412102 37.43405990 Rotation angle (degrees) 151.15909227 Shift along axis -21.09422098 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0129 rotated from previous position = 0.0103 degrees atoms outside contour = 6621, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45064791 -0.89233119 -0.02572006 108.21569615 -0.72532751 -0.38279876 0.57215830 106.45910259 -0.52040030 -0.23918647 -0.81973982 88.45631882 Axis -0.84092798 0.51271724 0.17309295 Axis point 0.00000000 100.30292212 37.43320511 Rotation angle (degrees) 151.15705355 Shift along axis -21.10702369 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 48 shifted from previous position = 0.00884 rotated from previous position = 0.0136 degrees atoms outside contour = 6621, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45082081 -0.89224472 -0.02568971 108.21553075 -0.72533322 -0.38295659 0.57204543 106.46747995 -0.52024256 -0.23925639 -0.81981953 88.45798233 Axis -0.84098577 0.51264758 0.17301847 Axis point 0.00000000 100.29781223 37.42991132 Rotation angle (degrees) 151.16089246 Shift along axis -21.12256184 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 36 shifted from previous position = 0.0165 rotated from previous position = 0.0174 degrees atoms outside contour = 6628, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45061714 -0.89234412 -0.02581031 108.21556294 -0.72530111 -0.38281342 0.57218197 106.45995907 -0.52046375 -0.23911475 -0.81972046 88.44299305 Axis -0.84091943 0.51271462 0.17314222 Axis point 0.00000000 100.30086603 37.43076637 Rotation angle (degrees) 151.15860191 Shift along axis -21.10377594 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.00804 rotated from previous position = 0.00476 degrees atoms outside contour = 6624, contour level = 0.046939 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45065975 -0.89232398 -0.02576240 108.21560272 -0.72527069 -0.38281176 0.57222164 106.46546422 -0.52046924 -0.23919255 -0.81969428 88.44896720 Axis -0.84092967 0.51270198 0.17312992 Axis point 0.00000000 100.30524272 37.42955496 Rotation angle (degrees) 151.15441743 Shift along axis -21.10349398 > volume #3 level 0.192 > volume #5 level 0.0416 > surface dust #5 size 8.25 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0112 rotated from previous position = 0.004 degrees atoms outside contour = 6169, contour level = 0.041596 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45067247 -0.89231615 -0.02581144 108.21689345 -0.72527721 -0.38285904 0.57218172 106.45771232 -0.52044913 -0.23914609 -0.81972060 88.44092169 Axis -0.84093652 0.51268906 0.17313488 Axis point 0.00000000 100.29770417 37.42897483 Rotation angle (degrees) 151.15803371 Shift along axis -21.11162546 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0166 rotated from previous position = 0.0102 degrees atoms outside contour = 6172, contour level = 0.041596 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45069077 -0.89230988 -0.02570818 108.21563331 -0.72537113 -0.38285449 0.57206570 106.45821246 -0.52030237 -0.23917676 -0.81980481 88.45776278 Axis -0.84094517 0.51270319 0.17305102 Axis point 0.00000000 100.29851156 37.43397698 Rotation angle (degrees) 151.16167759 Shift along axis -21.11424346 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 40 shifted from previous position = 0.0097 rotated from previous position = 0.01 degrees atoms outside contour = 6170, contour level = 0.041596 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45066105 -0.89232346 -0.02575799 108.21571823 -0.72528502 -0.38281683 0.57220007 106.46142217 -0.52044813 -0.23918640 -0.81970947 88.44806251 Axis -0.84093096 0.51270298 0.17312070 Axis point 0.00000000 100.30259091 37.42962796 Rotation angle (degrees) 151.15554385 Shift along axis -21.10666965 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 48 shifted from previous position = 0.0057 rotated from previous position = 0.00983 degrees atoms outside contour = 6170, contour level = 0.041596 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45064395 -0.89233116 -0.02579050 108.21641792 -0.72537068 -0.38285976 0.57206275 106.46345685 -0.52034356 -0.23908894 -0.81980429 88.44335553 Axis -0.84093273 0.51271033 0.17309035 Axis point 0.00000000 100.29875771 37.43084772 Rotation angle (degrees) 151.16474062 Shift along axis -21.10912211 > volume #5 level 0.06755 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 48 shifted from previous position = 0.00514 rotated from previous position = 0.00254 degrees atoms outside contour = 8098, contour level = 0.067548 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45060810 -0.89234975 -0.02577345 108.21428172 -0.72538635 -0.38281982 0.57206960 106.46112683 -0.52035275 -0.23908348 -0.81980004 88.43921873 Axis -0.84092098 0.51272949 0.17309066 Axis point 0.00000000 100.29836730 37.42871101 Rotation angle (degrees) 151.16424597 Shift along axis -21.10589722 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 48 shifted from previous position = 0.0201 rotated from previous position = 0.00732 degrees atoms outside contour = 8093, contour level = 0.067548 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45069940 -0.89230581 -0.02569842 108.21551618 -0.72537889 -0.38286051 0.57205183 106.45968365 -0.52028408 -0.23918233 -0.81981480 88.45939462 Axis -0.84094825 0.51270147 0.17304115 Axis point 0.00000000 100.29892957 37.43421619 Rotation angle (degrees) 151.16211616 Shift along axis -21.11449692 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0166 rotated from previous position = 0.0082 degrees atoms outside contour = 8097, contour level = 0.067548 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45071400 -0.89229670 -0.02575854 108.21755081 -0.72529008 -0.38287298 0.57215608 106.45744143 -0.52039523 -0.23919634 -0.81974016 88.44282903 Axis -0.84094932 0.51268028 0.17309876 Axis point 0.00000000 100.29706137 37.42707568 Rotation angle (degrees) 151.15755684 Shift along axis -21.11750045 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 44 shifted from previous position = 0.0119 rotated from previous position = 0.0114 degrees atoms outside contour = 8097, contour level = 0.067548 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45067022 -0.89232124 -0.02567430 108.21602159 -0.72542063 -0.38283476 0.57201615 106.44809454 -0.52025117 -0.23916597 -0.81984045 88.45116033 Axis -0.84094035 0.51272043 0.17302337 Axis point 0.00000000 100.29292682 37.43126467 Rotation angle (degrees) 151.16384328 Shift along axis -21.12098874 > fitmap #2 inMap #5 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip (#5) using 10704 atoms average map value = 0.04085, steps = 28 shifted from previous position = 0.0185 rotated from previous position = 0.0137 degrees atoms outside contour = 8099, contour level = 0.067548 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip (#5) coordinates: Matrix rotation and translation 0.45066252 -0.89232198 -0.02578349 108.21645109 -0.72528448 -0.38283441 0.57218899 106.46349074 -0.52044762 -0.23916376 -0.81971640 88.43933636 Axis -0.84093250 0.51269825 0.17312724 Axis point 0.00000000 100.30147868 37.42626996 Rotation angle (degrees) 151.15691289 Shift along axis -21.10782678 > volume #5 level 0.01564 > volume #5 level 0.09274 > volume #5 level 0.08129 > select clear > ui tool show "Map Eraser" > volume erase #5 center 58.182,127.44,120.07 radius 25.303 Opened cryosparc_P1_J293_002_volume_map.mrc z flip copy as #7, grid size 256,256,256, pixel 0.825, shown at step 1, values float32 > volume erase #7 center 75.618,152.95,117.59 radius 25.238 > volume erase #7 center 127.14,53.565,126.13 radius 25.238 > volume erase #7 center 91.993,50.165,126.17 radius 25.238 > volume erase #7 center 64.916,67.666,113.61 radius 25.238 > volume erase #7 center 147.48,78.13,120.88 radius 25.238 > volume erase #7 center 154.16,121.42,121.24 radius 25.238 > volume erase #7 center 148.8,135.09,117.64 radius 25.238 > surface dust #7 size 8.25 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 44 shifted from previous position = 0.0396 rotated from previous position = 0.164 degrees atoms outside contour = 8898, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45137065 -0.89188288 -0.02845129 108.19522362 -0.72462790 -0.38495905 0.57159509 106.45390688 -0.52074846 -0.23738465 -0.82004243 88.47209375 Axis -0.84123761 0.51192739 0.17392423 Axis point 0.00000000 100.17903915 37.56330254 Rotation angle (degrees) 151.26056235 Shift along axis -21.13377916 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 44 shifted from previous position = 0.00242 rotated from previous position = 0.00387 degrees atoms outside contour = 8898, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45142685 -0.89185462 -0.02844541 108.19596896 -0.72461844 -0.38500770 0.57157431 106.45518051 -0.52071289 -0.23741192 -0.82005712 88.47414334 Axis -0.84125573 0.51190344 0.17390703 Axis point 0.00000000 100.17754103 37.56315997 Rotation angle (degrees) 151.26098727 Shift along axis -21.13943034 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0132 rotated from previous position = 0.00792 degrees atoms outside contour = 8894, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45147653 -0.89183343 -0.02832104 108.19603381 -0.72464461 -0.38499007 0.57155301 106.44718519 -0.52063340 -0.23752008 -0.82007627 88.48488717 Axis -0.84126924 0.51190337 0.17384191 Axis point 0.00000000 100.17594419 37.56307509 Rotation angle (degrees) 151.25811848 Shift along axis -21.14894006 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 44 shifted from previous position = 0.00735 rotated from previous position = 0.00989 degrees atoms outside contour = 8894, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45135561 -0.89189162 -0.02841577 108.19486227 -0.72464227 -0.38492766 0.57159801 106.44647595 -0.52074149 -0.23740270 -0.82004163 88.47736955 Axis -0.84123205 0.51194043 0.17391272 Axis point 0.00000000 100.17769209 37.56542041 Rotation angle (degrees) 151.25954064 Shift along axis -21.13539053 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0013 rotated from previous position = 0.0145 degrees atoms outside contour = 8895, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45135845 -0.89189108 -0.02838784 108.19537805 -0.72477965 -0.38497526 0.57139173 106.44549709 -0.52054780 -0.23732755 -0.82018634 88.47909773 Axis -0.84124172 0.51195204 0.17383176 Axis point 0.00000000 100.17201954 37.56804512 Rotation angle (degrees) 151.27083121 Shift along axis -21.14299855 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 28 shifted from previous position = 0.0113 rotated from previous position = 0.0177 degrees atoms outside contour = 8893, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45147144 -0.89183345 -0.02840159 108.19682184 -0.72458297 -0.38500844 0.57161879 106.45220146 -0.52072360 -0.23749025 -0.82002763 88.48832855 Axis -0.84126646 0.51188898 0.17389772 Axis point 0.00000000 100.17922484 37.56723856 Rotation angle (degrees) 151.25661850 Shift along axis -21.14273000 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0101 rotated from previous position = 0.0123 degrees atoms outside contour = 8895, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45138175 -0.89187829 -0.02841891 108.19345639 -0.72471453 -0.38498900 0.57146507 106.46097865 -0.52061826 -0.23735331 -0.82013416 88.48693552 Axis -0.84124624 0.51193304 0.17386584 Axis point 0.00000000 100.18057613 37.57020106 Rotation angle (degrees) 151.26715179 Shift along axis -21.13159105 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 40 shifted from previous position = 0.00605 rotated from previous position = 0.00223 degrees atoms outside contour = 8893, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45137549 -0.89188217 -0.02839659 108.19391644 -0.72470691 -0.38496490 0.57149097 106.45505738 -0.52063430 -0.23737781 -0.82011689 88.48633669 Axis -0.84124263 0.51193884 0.17386622 Axis point 0.00000000 100.17937136 37.56927861 Rotation angle (degrees) 151.26505977 Shift along axis -21.13407146 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 44 shifted from previous position = 0.00372 rotated from previous position = 0.00896 degrees atoms outside contour = 8892, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45136482 -0.89188976 -0.02832769 108.19536941 -0.72465674 -0.38488709 0.57160699 106.45303176 -0.52071338 -0.23747543 -0.82003842 88.48853109 Axis -0.84123251 0.51195137 0.17387828 Axis point 0.00000000 100.18492077 37.56599192 Rotation angle (degrees) 151.25638405 Shift along axis -21.13245331 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0183 rotated from previous position = 0.0122 degrees atoms outside contour = 8897, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45127226 -0.89193110 -0.02850019 108.19350909 -0.72468717 -0.38491811 0.57154752 106.46111474 -0.52075125 -0.23726982 -0.82007389 88.47219317 Axis -0.84121056 0.51196577 0.17394207 Axis point 0.00000000 100.18310915 37.56739192 Rotation angle (degrees) 151.26585995 Shift along axis -21.12003961 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 40 shifted from previous position = 0.0117 rotated from previous position = 0.00688 degrees atoms outside contour = 8896, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45132055 -0.89190900 -0.02842714 108.19445159 -0.72464512 -0.38490085 0.57161245 106.44987177 -0.52076792 -0.23738086 -0.82003117 88.47382873 Axis -0.84122084 0.51195396 0.17392711 Axis point 0.00000000 100.18019149 37.56421870 Rotation angle (degrees) 151.25940936 Shift along axis -21.12999707 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0161 rotated from previous position = 0.0046 degrees atoms outside contour = 8897, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45130235 -0.89191724 -0.02845767 108.19513108 -0.72460740 -0.38488487 0.57167103 106.46620226 -0.52083618 -0.23737584 -0.81998927 88.47428817 Axis -0.84121324 0.51195466 0.17396181 Axis point 0.00000000 100.19010513 37.56359073 Rotation angle (degrees) 151.25704510 Shift along axis -21.11816148 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 36 shifted from previous position = 0.0143 rotated from previous position = 0.0142 degrees atoms outside contour = 8893, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45135737 -0.89189243 -0.02836226 108.19394024 -0.72472507 -0.38493290 0.57148949 106.45575884 -0.52062472 -0.23739115 -0.82011911 88.48527495 Axis -0.84123635 0.51195325 0.17385416 Axis point 0.00000000 100.18112580 37.56742193 Rotation angle (degrees) 151.26436429 Shift along axis -21.13277121 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.00752 rotated from previous position = 0.014 degrees atoms outside contour = 8897, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45133012 -0.89190372 -0.02844099 108.19354159 -0.72459607 -0.38489704 0.57167719 106.46176272 -0.52082786 -0.23740691 -0.81998555 88.47933718 Axis -0.84122114 0.51194462 0.17395315 Axis point 0.00000000 100.18771489 37.56520509 Rotation angle (degrees) 151.25589427 Shift along axis -21.12090887 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 44 shifted from previous position = 0.0102 rotated from previous position = 0.00698 degrees atoms outside contour = 8892, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45135683 -0.89189134 -0.02840520 108.19530580 -0.72465305 -0.38492702 0.57158477 106.45319526 -0.52072544 -0.23740477 -0.82005122 88.48551206 Axis -0.84123279 0.51194225 0.17390378 Axis point 0.00000000 100.18213761 37.56853458 Rotation angle (degrees) 151.26000177 Shift along axis -21.13158610 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.015 rotated from previous position = 0.0128 degrees atoms outside contour = 8896, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45131976 -0.89191026 -0.02840012 108.19254560 -0.72478358 -0.38494587 0.57140655 106.44247139 -0.52057587 -0.23730313 -0.82017559 88.47497840 Axis -0.84122940 0.51196705 0.17384716 Axis point 0.00000000 100.17064769 37.56728458 Rotation angle (degrees) 151.27074448 Shift along axis -21.13858840 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 40 shifted from previous position = 0.0138 rotated from previous position = 0.0137 degrees atoms outside contour = 8897, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45136559 -0.89188558 -0.02844677 108.19459838 -0.72463368 -0.38495369 0.57159137 106.45695666 -0.52074479 -0.23738319 -0.82004518 88.47529361 Axis -0.84123612 0.51193065 0.17392183 Axis point 0.00000000 100.18099402 37.56452048 Rotation angle (degrees) 151.26070814 Shift along axis -21.13083945 > fitmap #2 inMap #7 Fit molecule fold_satbc_msmk_model_0.cif (#2) to map cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) using 10704 atoms average map value = 0.04074, steps = 48 shifted from previous position = 0.0169 rotated from previous position = 0.0118 degrees atoms outside contour = 8891, contour level = 0.081288 Position of fold_satbc_msmk_model_0.cif (#2) relative to cryosparc_P1_J293_002_volume_map.mrc z flip copy (#7) coordinates: Matrix rotation and translation 0.45141226 -0.89186448 -0.02836786 108.19423432 -0.72473074 -0.38499447 0.57144083 106.44724223 -0.52056924 -0.23739633 -0.82015283 88.49001916 Axis -0.84125560 0.51192897 0.17383251 Axis point 0.00000000 100.17402129 37.57071275 Rotation angle (degrees) 151.26677221 Shift along axis -21.14313727 > volume #5 level 0.1767 > volume #7 level 0.03396 Can only have one displayed volume when erasing > volume #7 level 0.04312 > surface dust #5 size 8.25 > surface dust #7 size 8.25 > volume #5 level 0.0103 > volume #5 level 0.0477 > volume #7 level 0.008773 > volume erase #7 center 41.631,89.076,115.17 radius 25.238 > volume erase #7 center 49.086,115.96,85.314 radius 25.238 > volume erase #7 center 167.6,116.83,98.538 radius 25.238 > volume erase #7 center 153.43,126.76,142.8 radius 25.238 > volume erase #7 center 149.6,82.517,148.34 radius 25.238 > volume erase #7 center 97.281,49.446,150.61 radius 25.238 > volume erase #7 center 48.491,112.62,140.6 radius 25.238 > volume erase #7 center 120.41,179.47,113.69 radius 25.238 > volume erase #7 center 145.95,159.63,134.61 radius 25.238 > volume erase #7 center 96.103,178.36,120.41 radius 25.238 > volume #7 level 0.07442 > volume erase #7 center 99.515,166.5,119.7 radius 25.238 > volume #7 level 0.04389 > save /Users/lue81154/Downloads/mask_tmds.mrc models #7 > save "/Users/lue81154/OneDrive - Diamond Light Source Ltd/flipmap.mrc" > models #5 > volume #7 level 0.03244 > open /Users/lue81154/Downloads/cryosparc_P1_J302_mask.mrc Opened cryosparc_P1_J302_mask.mrc as #8, grid size 256,256,256, pixel 0.825, shown at level 1, step 1, values float32 > volume #8 level 0.7588 > volume #7 level 0.01793 > volume #8 level 1 > volume #8 level 0.9505 Desktop color scheme is dark Desktop color scheme is light > open /Users/lue81154/Downloads/sequence.fasta ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88.1 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac15,12 Model Number: MXCV3B/A Chip: Apple M3 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.140.96 OS Loader Version: 10151.140.19.700.2 Software: System Software Overview: System Version: macOS 14.7.7 (23H723) Kernel Version: Darwin 23.6.0 Time since boot: 13 days, 12 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.6.1 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.19 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.10.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.15 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.3.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 3 weeks ago
Component: | Unassigned → Sequence |
---|---|
Description: | modified (diff) |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash creating sequence viewer for FASTA file |
comment:2 by , 3 weeks ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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