ffmpeg: Permission denied

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-15.7-x86_64-i386-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "/Users/luisvaca/Desktop/p24 hex final.cxs"

Log from Mon Sep 29 11:55:22 2025UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "/Users/luisvaca/Desktop/p24 hex final.cxs"

Log from Mon Sep 29 11:50:09 2025UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/luisvaca/Desktop/P24 hex gauss.stl"

Opened STL file P24 hex gauss.stl containing 38248 triangles  

> open /Users/luisvaca/Desktop/P24-HEX.pdb

Chain information for P24-HEX.pdb #2  
---  
Chain | Description  
A B C D E F | No description available  
  

> toolshed show

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-17.522,0,1,0,10.565,0,0,1,0

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-13.101,0,1,0,28.619,0,0,1,8.3983

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-18.178,0,1,0,14.888,0,0,1,2.2242

> ui mousemode right "translate selected atoms"

> ui mousemode right rotate

> ui mousemode right translate

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-17.927,0,1,0,29.433,0,0,1,38.038

> view matrix models #1,1,0,0,-30.17,0,1,0,1.8624,0,0,1,49.858

> view matrix models #1,1,0,0,-31.709,0,1,0,4.0283,0,0,1,51.674

> ui mousemode right pivot

> ui mousemode right "translate selected atoms"

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-38.151,0,1,0,7.7589,0,0,1,67.844

> ui mousemode right "rotate selected models"

Drag select of P24 hex gauss.stl, 460 of 38248 triangles, 48 atoms  

> select clear

Drag select of P24 hex gauss.stl, 190 of 38248 triangles  

> ui mousemode right "move picked models"

> view matrix models #1,1,0,0,-44.244,0,1,0,10.58,0,0,1,66.258

> ui mousemode right "translate selected atoms"

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.78489,-0.44404,0.43218,-44.071,-0.095152,-0.60282,-0.79218,10.262,0.61229,-0.6629,0.4309,66.03

> view matrix models
> #1,-0.50135,0.060768,0.86311,-43.898,-0.21499,-0.97499,-0.056237,10.557,0.83811,-0.21376,0.50188,66.059

> view matrix models
> #1,0.12427,0.077821,0.98919,-43.847,0.94538,0.29348,-0.14185,10.523,-0.30134,0.95279,-0.0371,65.842

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.12427,0.077821,0.98919,17.49,0.94538,0.29348,-0.14185,-31.718,-0.30134,0.95279,-0.0371,12.414

> view matrix models
> #1,0.12427,0.077821,0.98919,9.0408,0.94538,0.29348,-0.14185,-15.578,-0.30134,0.95279,-0.0371,-11.557

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.0054109,0.13336,0.99105,9.0416,0.95952,0.27978,-0.032409,-15.534,-0.2816,0.95076,-0.12947,-11.594

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.0054109,0.13336,0.99105,11.334,0.95952,0.27978,-0.032409,8.4864,-0.2816,0.95076,-0.12947,-0.16276

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.34745,0.38708,0.85408,11.279,0.86855,0.21042,-0.44871,8.3194,-0.3534,0.89772,-0.26309,-0.21636

Drag select of P24 hex gauss.stl, 22 of 38248 triangles, 1 atoms  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.34745,0.38708,0.85408,18.994,0.86855,0.21042,-0.44871,20.097,-0.3534,0.89772,-0.26309,0.38763,#2,1,0,0,7.7145,0,1,0,11.778,0,0,1,0.604

> ui mousemode right "translate selected atoms"

> ui mousemode right "move picked models"

> view matrix models
> #1,0.34745,0.38708,0.85408,13.288,0.86855,0.21042,-0.44871,11.745,-0.3534,0.89772,-0.26309,-0.75893

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.42892,0.45566,0.78,13.258,0.82015,0.16552,-0.54769,11.706,-0.37867,0.87463,-0.30271,-0.77483,#2,0.99159,0.11842,0.052268,7.8067,-0.11873,0.99292,0.002847,12.403,-0.051561,-0.0090291,0.99863,0.87331

> view matrix models
> #1,0.41089,0.43916,0.79894,13.266,0.83211,0.17742,-0.52547,11.714,-0.37251,0.88072,-0.29253,-0.77074,#2,0.99511,0.090796,0.038837,7.7755,-0.090998,0.99585,0.0034522,12.258,-0.038362,-0.0069694,0.99924,0.80473

> select clear

Drag select of P24 hex gauss.stl, 78 of 38248 triangles, 12 atoms  

> view matrix models
> #1,0.4459,0.47759,0.75702,13.249,0.80832,0.1484,-0.56974,11.697,-0.38444,0.86596,-0.31988,-0.78171,#2,0.98635,0.1481,0.071999,7.8546,-0.1483,0.98894,-0.0025468,12.552,-0.07158,-0.0081657,0.9974,0.97635

> ui mousemode right "move picked models"

> view matrix models
> #1,0.4459,0.47759,0.75702,14.623,0.80832,0.1484,-0.56974,13.195,-0.38444,0.86596,-0.31988,0.22865

> ui mousemode right "translate selected atoms"

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.31101,0.94726,-0.077252,15.818,-0.82881,0.23054,-0.50982,22.737,-0.46512,0.22259,0.85681,5.0231,#2,0.40875,0.50411,0.76079,12.475,-0.63416,-0.4426,0.63399,27.837,0.65632,-0.74161,0.13878,1.925

> ui mousemode right "move picked models"

> view matrix models
> #1,0.31101,0.94726,-0.077252,14.87,-0.82881,0.23054,-0.50982,17.324,-0.46512,0.22259,0.85681,12.117

> view matrix models
> #1,0.31101,0.94726,-0.077252,16.038,-0.82881,0.23054,-0.50982,16.558,-0.46512,0.22259,0.85681,11.691

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.33507,0.93122,0.14335,16.138,-0.79355,0.36095,-0.48989,14.901,-0.50794,0.050394,0.85992,13.82,#2,0.59931,0.42265,0.67985,9.4264,-0.55441,-0.39347,0.73335,25.311,0.57746,-0.81642,-0.0014914,4.7718

> view matrix models
> #1,0.33562,0.93712,0.095699,16.123,-0.79167,0.33565,-0.51049,15.217,-0.51052,0.095568,0.85454,13.334,#2,0.56109,0.44575,0.69749,10.05,-0.58114,-0.38791,0.7154,25.976,0.58945,-0.80674,0.041387,4.2421

> ui mousemode right zoom

> ui mousemode right rotate

> ui mousemode right translate

> ui mousemode right select

Drag select of P24 hex gauss.stl, 173 of 38248 triangles, 622 atoms  

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.33562,0.93712,0.095699,10.698,-0.79167,0.33565,-0.51049,15.152,-0.51052,0.095568,0.85454,14.305,#2,0.56109,0.44575,0.69749,4.6253,-0.58114,-0.38791,0.7154,25.91,0.58945,-0.80674,0.041387,5.2128

> ui mousemode right "move picked models"

> view matrix models
> #1,0.33562,0.93712,0.095699,6.3955,-0.79167,0.33565,-0.51049,17.637,-0.51052,0.095568,0.85454,16.338

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.41823,0.08532,0.90433,5.8775,-0.87764,0.29463,0.37808,18.068,-0.23418,-0.9518,0.1981,19.912,#2,0.9507,-0.024576,-0.30913,-7.3006,0.13202,-0.86993,0.47518,14.115,-0.2806,-0.49256,-0.8238,17.449

> view matrix models
> #1,0.51903,0.14633,0.84214,5.3332,-0.83042,0.31977,0.45624,17.989,-0.20253,-0.93613,0.28749,19.941,#2,0.95623,0.10372,-0.27362,-7.1248,0.22491,-0.85869,0.4605,12.882,-0.18719,-0.50188,-0.84444,16.19

> ui mousemode right "translate selected atoms"

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.52709,0.18047,0.83043,5.2951,-0.82632,0.33702,0.45124,17.965,-0.19844,-0.92404,0.32676,19.956,#2,0.96224,0.12316,-0.24274,-7.01,0.22874,-0.84926,0.47585,12.921,-0.14755,-0.51341,-0.84537,15.654

> ui mousemode right select

Drag select of P24 hex gauss.stl, 44 of 38248 triangles, 95 atoms  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.49701,0.14581,0.85541,5.3337,-0.8416,0.32115,0.43424,17.954,-0.21139,-0.93574,0.28233,19.938,#2,0.95971,0.078529,-0.26979,-7.2764,0.20277,-0.85825,0.47147,13.168,-0.19452,-0.50718,-0.8396,16.272

> ui mousemode right "translate selected atoms"

> ui mousemode right "move picked models"

> view matrix models
> #1,0.49701,0.14581,0.85541,7.838,-0.8416,0.32115,0.43424,14.852,-0.21139,-0.93574,0.28233,16.424

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.26368,-0.33299,0.90531,14.494,-0.95373,0.23056,-0.19298,16.046,-0.14446,-0.91431,-0.37838,15.96,#2,0.55269,-0.70531,-0.44392,4.5537,-0.40696,-0.69326,0.59479,23.873,-0.72727,-0.14808,-0.67019,24.4

> select clear

Drag select of P24 hex gauss.stl, 16 of 38248 triangles, 42 atoms  

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.46503,0.53196,0.70765,7.8819,-0.8176,0.56462,0.11284,16.413,-0.33953,-0.63105,0.6975,15.769,#2,0.97187,0.19831,0.12703,-6.0187,0.030851,-0.64196,0.76612,18.355,0.23348,-0.74065,-0.63002,9.9121

> view matrix models
> #1,0.91499,0.086394,0.39411,7.8471,-0.23044,0.91371,0.33471,15.998,-0.33119,-0.39708,0.85595,15.763,#2,0.68796,0.63606,-0.34949,-3.3258,0.55948,-0.15808,0.81363,10.431,0.46227,-0.75528,-0.46461,7.075

> view matrix models
> #1,0.85403,-0.34809,0.38661,9.9219,0.21058,0.91087,0.35492,15.271,-0.4757,-0.2217,0.85121,15.25,#2,0.49219,0.49505,-0.71601,0.35193,0.72888,0.21531,0.64991,6.761,0.4759,-0.84176,-0.25486,7.0466

> color #1 #b2b2b278

> view matrix models
> #1,-0.82441,-0.55364,0.11761,10.934,-0.22705,0.51385,0.82729,15.403,-0.51846,0.65532,-0.54932,11.384,#2,-0.4003,-0.88531,-0.23661,15.761,0.82658,-0.4603,0.32388,4.1066,-0.39564,-0.06593,0.91604,20.35

> view matrix models
> #1,-0.81776,-0.57547,0.0095857,10.886,-0.2896,0.42581,0.85721,16.108,-0.49739,0.69822,-0.51487,11.112,#2,-0.4987,-0.83566,-0.23014,17.21,0.79632,-0.54658,0.25908,5.0091,-0.34229,-0.054063,0.93804,19.366

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.81776,-0.57547,0.0095857,10.961,-0.2896,0.42581,0.85721,19.032,-0.49739,0.69822,-0.51487,9.9702

> view matrix models
> #1,-0.81776,-0.57547,0.0095857,9.5581,-0.2896,0.42581,0.85721,18.732,-0.49739,0.69822,-0.51487,9.5854

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.82162,-0.54528,0.16618,9.6143,-0.18998,0.53679,0.82205,17.944,-0.53745,0.64384,-0.54463,9.8976,#2,-0.35461,-0.90292,-0.24287,14.572,0.84386,-0.42092,0.33275,3.7175,-0.40268,-0.086947,0.9112,20.648

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.82162,-0.54528,0.16618,9.6448,-0.18998,0.53679,0.82205,6.6256,-0.53745,0.64384,-0.54463,12.445,#2,-0.35461,-0.90292,-0.24287,14.602,0.84386,-0.42092,0.33275,-7.6011,-0.40268,-0.086947,0.9112,23.196

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.82162,-0.54528,0.16618,8.7503,-0.18998,0.53679,0.82205,29.595,-0.53745,0.64384,-0.54463,42.251

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.80414,-0.54792,0.23054,8.8987,-0.09166,0.49748,0.86262,29.61,-0.58733,0.67253,-0.45027,42.508,#2,-0.29459,-0.91717,-0.26835,13.825,0.89746,-0.362,0.25205,-5.7449,-0.32831,-0.16658,0.92977,19.999

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.80414,-0.54792,0.23054,8.5128,-0.09166,0.49748,0.86262,30.693,-0.58733,0.67253,-0.45027,44.327,#2,-0.29459,-0.91717,-0.26835,13.439,0.89746,-0.362,0.25205,-4.6621,-0.32831,-0.16658,0.92977,21.818

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.80414,-0.54792,0.23054,21.186,-0.09166,0.49748,0.86262,13.046,-0.58733,0.67253,-0.45027,17.151

> ui mousemode right rotate

> ui mousemode right translate

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.80414,-0.54792,0.23054,11.195,-0.09166,0.49748,0.86262,14.738,-0.58733,0.67253,-0.45027,10.668

> view matrix models
> #1,-0.80414,-0.54792,0.23054,9.6392,-0.09166,0.49748,0.86262,14.341,-0.58733,0.67253,-0.45027,9.9245

> ui mousemode right select

Drag select of 38 atoms  

> select clear

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #1,-0.80414,-0.54792,0.23054,13.606,-0.09166,0.49748,0.86262,13.018,-0.58733,0.67253,-0.45027,10.62

> ui mousemode right "rotate selected models"

Drag select of P24 hex gauss.stl, 389 of 38248 triangles  

> view matrix models
> #1,-0.43085,-0.88486,0.17718,13.585,-0.3334,0.33852,0.87991,13.025,-0.83858,0.32004,-0.44087,10.624

> view matrix models
> #1,-0.44542,-0.88408,0.14142,13.57,-0.38041,0.32986,0.86399,13.019,-0.81049,0.33104,-0.48324,10.607

> view matrix models
> #1,0.095529,-0.9884,0.11808,13.561,-0.50457,0.054176,0.86167,13.018,-0.85807,-0.1419,-0.49354,10.603

> ui mousemode right "move picked models"

> view matrix models
> #1,0.095529,-0.9884,0.11808,15.556,-0.50457,0.054176,0.86167,13.708,-0.85807,-0.1419,-0.49354,12.041

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.79034,-0.56468,0.23771,15.604,-0.16819,0.57306,0.80207,13.684,-0.58913,0.59392,-0.54788,12.019

> view matrix models
> #1,-0.41053,-0.89873,0.15409,15.571,-0.44596,0.34529,0.82577,13.693,-0.79535,0.27028,-0.54255,12.021

> view matrix models
> #1,-0.61891,-0.76332,0.18519,15.583,-0.32252,0.46195,0.82619,13.694,-0.71619,0.45161,-0.53209,12.025

> view matrix models
> #1,-0.60139,-0.77699,0.18607,15.583,-0.37503,0.48017,0.79297,13.68,-0.70547,0.4071,-0.58016,12.006

> view matrix models
> #1,-0.29669,-0.94306,0.15035,15.569,-0.4546,0.27793,0.84622,13.702,-0.83983,0.18272,-0.51118,12.034

> view matrix models
> #1,-0.29336,-0.94887,0.11655,15.556,-0.43684,0.24149,0.86652,13.71,-0.85036,0.20329,-0.48534,12.044

> view matrix models
> #1,-0.29014,-0.94872,0.12548,15.559,-0.41203,0.24219,0.87839,13.715,-0.86374,0.20316,-0.46117,12.054

> view matrix models
> #1,-0.29294,-0.95,0.10812,15.552,-0.43986,0.2343,0.86697,13.71,-0.84895,0.20641,-0.4865,12.044

> view matrix models
> #1,-0.68005,-0.72096,0.13319,15.562,-0.25811,0.40546,0.87692,13.714,-0.68623,0.56197,-0.46182,12.053

> view matrix models
> #1,-0.69967,-0.70074,0.13937,15.565,-0.23527,0.41015,0.88115,13.716,-0.67462,0.58373,-0.45183,12.057

> view matrix models
> #1,-0.46528,-0.87281,0.14733,15.568,-0.32794,0.32458,0.88719,13.718,-0.82217,0.36448,-0.43725,12.063

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.46528,-0.87281,0.14733,15.399,-0.32794,0.32458,0.88719,12.857,-0.82217,0.36448,-0.43725,10.949

> ui mousemode right translate

> ui mousemode right zoom

> ui mousemode right minimize

> ui mousemode right "pick blobs"

> ui mousemode right "contour level"

> ui mousemode right zone

> select clear

Drag select of 1 atoms  

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.29459,-0.91717,-0.26835,12.279,0.89746,-0.362,0.25205,-6.5776,-0.32831,-0.16658,0.92977,21.632

> view matrix models
> #2,-0.29459,-0.91717,-0.26835,15.151,0.89746,-0.362,0.25205,-5.2124,-0.32831,-0.16658,0.92977,21.928

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.31726,-0.92372,-0.21468,15.329,0.91888,-0.35541,0.17131,-5.1975,-0.23454,-0.14292,0.96154,19.65

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.31726,-0.92372,-0.21468,17.808,0.91888,-0.35541,0.17131,-3.6607,-0.23454,-0.14292,0.96154,19.651

> view matrix models
> #2,-0.31726,-0.92372,-0.21468,17.037,0.91888,-0.35541,0.17131,-4.0762,-0.23454,-0.14292,0.96154,18.612

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.21463,-0.96994,-0.11468,14.477,0.95917,-0.23146,0.16253,-5.4457,-0.18418,-0.075113,0.98002,17.124

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.21463,-0.96994,-0.11468,14.378,0.95917,-0.23146,0.16253,-6.3266,-0.18418,-0.075113,0.98002,16.957

> close #2

> open /Users/luisvaca/Desktop/P24-HEX.pdb

Chain information for P24-HEX.pdb #2  
---  
Chain | Description  
A B C D E F | No description available  
  

> view matrix models #2,1,0,0,-1.1884,0,1,0,23.116,0,0,1,2.5303

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> select /E:195@SG

1 atom, 1 residue, 1 model selected  

> view matrix models #2,1,0,0,1.8531,0,1,0,23.612,0,0,1,1.6926

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.46886,0.40409,-0.78542,15.983,0.16221,-0.91348,-0.37315,31.377,-0.86825,0.047549,-0.49384,28.927

> view matrix models
> #2,0.29484,-0.40853,0.86381,13.28,0.949,0.2308,-0.21476,8.5323,-0.11163,0.88308,0.45575,3.2867

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.29484,-0.40853,0.86381,9.8441,0.949,0.2308,-0.21476,-7.1815,-0.11163,0.88308,0.45575,14.724

> view matrix models
> #2,0.29484,-0.40853,0.86381,12.515,0.949,0.2308,-0.21476,-6.4121,-0.11163,0.88308,0.45575,18.372

> view matrix models
> #2,0.29484,-0.40853,0.86381,11.838,0.949,0.2308,-0.21476,-6.2801,-0.11163,0.88308,0.45575,21.487

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.16682,-0.31736,0.93352,13.68,0.97986,0.15877,-0.12112,-7.1705,-0.10977,0.93492,0.33746,21.934

> view matrix models
> #2,0.14423,-0.3983,0.90584,14.701,0.98886,0.091961,-0.11702,-7.0751,-0.036695,0.91263,0.40713,20.071

> view matrix models
> #2,0.063656,-0.55172,0.83159,17.566,0.99784,0.021848,-0.061887,-7.2774,0.015976,0.83374,0.55193,18.439

> view matrix models
> #2,0.039471,-0.56366,0.82506,18.171,0.99875,-0.0031493,-0.049931,-7.2538,0.030743,0.826,0.56283,18.097

> view matrix models
> #2,0.067343,-0.49823,0.86443,17.038,0.99735,0.0097765,-0.072063,-7.1484,0.027453,0.86699,0.49756,18.377

> view matrix models
> #2,0.13686,-0.41072,0.90143,14.941,0.99055,0.048716,-0.12819,-6.8411,0.0087377,0.91046,0.41351,19.086

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.13686,-0.41072,0.90143,16.918,0.99055,0.048716,-0.12819,-8.4717,0.0087377,0.91046,0.41351,15.712

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.43976,-0.0058288,0.8981,8.684,0.89648,0.063232,-0.43855,-4.6515,-0.054233,0.99798,0.033032,18.97

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.43976,-0.0058288,0.8981,8.4495,0.89648,0.063232,-0.43855,-5.8929,-0.054233,0.99798,0.033032,16.743

> view matrix models
> #2,0.43976,-0.0058288,0.8981,11.022,0.89648,0.063232,-0.43855,-5.7214,-0.054233,0.99798,0.033032,17.64

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.45079,0.0012043,0.89263,10.79,0.8894,0.084415,-0.44928,-5.6048,-0.075892,0.99643,0.036983,18.078

> view matrix models
> #2,0.41262,-0.099943,0.9054,11.985,0.9083,0.12025,-0.40067,-6.4677,-0.068827,0.9877,0.1404,17.334

> view matrix models
> #2,0.433,-0.062143,0.89925,11.418,0.89768,0.12025,-0.42393,-6.1012,-0.08179,0.9908,0.10785,17.793

> view matrix models
> #2,0.42915,-0.12684,0.89428,11.83,0.89544,0.18954,-0.40282,-6.5057,-0.11841,0.97365,0.19492,18.108

> view matrix models
> #2,0.44869,-0.05667,0.89189,11.108,0.88684,0.15158,-0.43651,-5.9413,-0.11046,0.98682,0.11827,18.351

> view matrix models
> #2,0.57096,0.27567,0.77331,7.7205,0.78869,0.077379,-0.6099,-2.4654,-0.22797,0.95813,-0.17324,22.749

> view matrix models
> #2,-0.11869,-0.95581,0.26898,31.053,0.981,-0.071005,0.18056,-10.682,-0.15349,0.2853,0.94607,17.425

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.11869,-0.95581,0.26898,28.044,0.981,-0.071005,0.18056,-5.5376,-0.15349,0.2853,0.94607,25.536

> view matrix models
> #2,-0.11869,-0.95581,0.26898,20.269,0.981,-0.071005,0.18056,-5.1463,-0.15349,0.2853,0.94607,21.504

> view matrix models
> #2,-0.11869,-0.95581,0.26898,13.718,0.981,-0.071005,0.18056,-5.7035,-0.15349,0.2853,0.94607,18.045

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.074646,-0.93112,0.35699,12.135,0.98509,-0.013205,0.17154,-6.0025,-0.15501,0.36448,0.91822,17.88

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.074646,-0.93112,0.35699,14.491,0.98509,-0.013205,0.17154,-3.4061,-0.15501,0.36448,0.91822,17.636

> view matrix models
> #2,-0.074646,-0.93112,0.35699,13.126,0.98509,-0.013205,0.17154,-1.661,-0.15501,0.36448,0.91822,20.552

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.089755,-0.81418,0.57364,11.57,0.98493,0.012924,0.17245,-1.7847,-0.14782,0.58047,0.80075,20.12

> view matrix models
> #2,0.056761,-0.67558,0.7351,6.85,0.99684,0.079324,-0.004071,-1.2585,-0.055561,0.73301,0.67795,18.225

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.056761,-0.67558,0.7351,8.6479,0.99684,0.079324,-0.004071,-3.4156,-0.055561,0.73301,0.67795,14.4

> view matrix models
> #2,0.056761,-0.67558,0.7351,15.444,0.99684,0.079324,-0.004071,-4.7577,-0.055561,0.73301,0.67795,13.227

> view matrix models
> #2,0.056761,-0.67558,0.7351,14.691,0.99684,0.079324,-0.004071,-4.7442,-0.055561,0.73301,0.67795,13.412

> view matrix models
> #2,0.056761,-0.67558,0.7351,20.345,0.99684,0.079324,-0.004071,-3.7234,-0.055561,0.73301,0.67795,18.264

> view matrix models
> #2,0.056761,-0.67558,0.7351,20.282,0.99684,0.079324,-0.004071,-3.2187,-0.055561,0.73301,0.67795,19.713

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 0 maps.  

[Repeated 1 time(s)]

> view matrix models
> #2,0.056761,-0.67558,0.7351,19.847,0.99684,0.079324,-0.004071,-5.5907,-0.055561,0.73301,0.67795,22.187

> view matrix models
> #2,0.056761,-0.67558,0.7351,15.683,0.99684,0.079324,-0.004071,-3.9408,-0.055561,0.73301,0.67795,23.392

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.093409,-0.61426,0.78355,14.329,0.99319,0.11253,-0.030183,-3.8577,-0.069633,0.78104,0.62059,23.818

> view matrix models
> #2,0.24804,-0.35296,0.90216,9.1327,0.96623,0.15722,-0.20415,-2.4285,-0.069778,0.92233,0.38004,24.644

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.24804,-0.35296,0.90216,13.461,0.96623,0.15722,-0.20415,-1.709,-0.069778,0.92233,0.38004,25.617

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.13709,-0.38061,0.91452,15.848,0.98667,-0.029206,-0.16007,-1.5445,0.087632,0.92427,0.37153,22.347

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.13709,-0.38061,0.91452,23.744,0.98667,-0.029206,-0.16007,-49.866,0.087632,0.92427,0.37153,-63.034

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.22081,-0.38667,0.89539,22.128,0.97291,0.15182,-0.17436,-50.329,-0.068517,0.90963,0.40972,-59.915

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.22081,-0.38667,0.89539,20.028,0.97291,0.15182,-0.17436,-57.716,-0.068517,0.90963,0.40972,-55.331

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.48121,-0.079424,0.873,13.259,0.86714,0.18913,-0.46077,-53.903,-0.12852,0.97873,0.15988,-52.853

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.48121,-0.079424,0.873,9.0283,0.86714,0.18913,-0.46077,-2.5263,-0.12852,0.97873,0.15988,22.231

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.402,-0.060152,0.91366,10.356,0.90403,0.18447,-0.38562,-3.7431,-0.14535,0.981,0.12854,22.767

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.402,-0.060152,0.91366,12.429,0.90403,0.18447,-0.38562,-3.8095,-0.14535,0.981,0.12854,22.826

> view matrix models
> #2,0.402,-0.060152,0.91366,12.315,0.90403,0.18447,-0.38562,-3.3457,-0.14535,0.981,0.12854,23.398

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.38747,-0.0029414,0.92188,12.305,0.90561,0.18827,-0.38004,-3.4309,-0.17245,0.98211,0.075615,24.288

> view matrix models
> #2,0.28572,-0.21957,0.93282,15.385,0.94861,0.20297,-0.24278,-5.2478,-0.13603,0.95425,0.26628,22.479

> view matrix models
> #2,0.37083,0.14647,0.91708,11.991,0.9031,0.17339,-0.39287,-3.23,-0.21655,0.9739,-0.067975,26.137

> view matrix models
> #2,0.36835,-0.0078049,0.92966,12.682,0.91302,0.19152,-0.36015,-3.7243,-0.17524,0.98146,0.077673,24.338

> view matrix models
> #2,0.40057,0.82017,0.4085,11.363,0.76839,-0.057823,-0.63737,2.1816,-0.49913,0.5692,-0.65337,37.562

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.40057,0.82017,0.4085,14.825,0.76839,-0.057823,-0.63737,-4.3423,-0.49913,0.5692,-0.65337,20.909

> view matrix models
> #2,0.40057,0.82017,0.4085,19.255,0.76839,-0.057823,-0.63737,-5.0205,-0.49913,0.5692,-0.65337,21.146

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.39441,0.8652,0.30962,19.783,0.7524,-0.11062,-0.64935,-4.3654,-0.52757,0.48907,-0.69461,22.37

> view matrix models
> #2,-0.28949,-0.80227,-0.52207,47.031,0.8429,-0.47212,0.25812,-10.169,-0.45356,-0.36533,0.8129,15.514

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.28949,-0.80227,-0.52207,14.421,0.8429,-0.47212,0.25812,-0.39462,-0.45356,-0.36533,0.8129,23.996

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.27692,-0.94942,-0.14807,12.541,0.9238,-0.30545,0.23087,-2.7035,-0.26442,-0.072857,0.96165,17.743

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.27692,-0.94942,-0.14807,12.282,0.9238,-0.30545,0.23087,-1.9133,-0.26442,-0.072857,0.96165,20.15

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.24575,-0.95663,-0.15639,11.711,0.93014,-0.27814,0.23975,-2.2282,-0.27286,-0.08654,0.95816,20.413

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.24575,-0.95663,-0.15639,13.538,0.93014,-0.27814,0.23975,-2.3764,-0.27286,-0.08654,0.95816,20.201

Drag select of P24 hex gauss.stl, 6 of 38248 triangles  

> select clear

[Repeated 1 time(s)]Drag select of P24 hex gauss.stl, 226 of 38248 triangles  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.46334,-0.87726,0.12541,15.39,-0.30953,0.29282,0.90468,12.864,-0.83037,0.38036,-0.40721,10.961

> view matrix models
> #1,-0.46305,-0.88053,0.10126,15.381,-0.32103,0.27311,0.90684,12.865,-0.82615,0.3874,-0.40913,10.96

> ui mousemode right rotate

> select #1

1 model selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,-0.40439,-0.90123,0.15575,15.402,-0.35169,0.31043,0.88315,12.855,-0.84427,0.30236,-0.44248,10.947

> select clear

Drag select of P24 hex gauss.stl, 299 of 38248 triangles  

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.40439,-0.90123,0.15575,16.732,-0.35169,0.31043,0.88315,17.776,-0.84427,0.30236,-0.44248,9.0255

> select clear

Drag select of P24 hex gauss.stl, 279 of 38248 triangles  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.43502,-0.86906,0.23558,16.764,-0.44676,0.018833,0.89446,17.781,-0.78177,-0.49436,-0.38007,9.0505

> view matrix models
> #1,0.43992,-0.88686,0.14126,16.726,-0.41752,-0.062722,0.9065,17.786,-0.79508,-0.45777,-0.39787,9.0434

> select clear

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/toolbar/tool.py", line 185, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/__init__.py", line 66, in run_provider  
shortcuts.run_provider(session, name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 1394, in run_provider  
keyboard_shortcuts(session).try_shortcut(name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 403, in try_shortcut  
self.run_shortcut(keys)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 421, in run_shortcut  
sc.run(self.session, status = self._enabled)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 340, in run  
f(s)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 1312, in save_spin_movie  
run(session, cmd)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 537, in run  
run_command(session, command, **kw)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 202, in movie_encode  
encode_op(session, output[-1], format, quality, qscale, bitrate,  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 260, in encode_op  
movie.start_encoding(output, f['ffmpeg_name'], output_size, f['ffmpeg_codec'],
"yuv420p", f['size_restriction'],  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/movie.py", line 324, in start_encoding  
self.encoder.run(Status_Reporter())  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/encode.py", line 232, in run  
p = Popen(self.arg_list, stdin=DEVNULL, stdout=PIPE, stderr=PIPE)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1026, in __init__  
self._execute_child(args, executable, preexec_fn, close_fds,  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child  
raise child_exception_type(errno_num, err_msg, err_filename)  
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'  
  
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'  
  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child  
raise child_exception_type(errno_num, err_msg, err_filename)  
  
See log for complete Python traceback.  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Currently encoding a movie  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Currently encoding a movie  

> save "/Users/luisvaca/Desktop/p24 hex final.cxs"

——— End of log from Mon Sep 29 11:50:09 2025 ———

> view name session-start

opened ChimeraX session  
Drag select of P24 hex gauss.stl, 289 of 38248 triangles  

> view matrix models
> #1,0.39742,-0.91198,0.10174,16.711,-0.3978,-0.071307,0.9147,17.789,-0.82693,-0.40399,-0.39113,9.0461

> view matrix models
> #1,0.63261,-0.77444,-0.0073611,16.667,-0.31612,-0.26688,0.91041,17.787,-0.70702,-0.57361,-0.41364,9.0371

> view matrix models
> #1,0.94803,-0.31816,-0.0019561,16.669,-0.18375,-0.55251,0.813,17.748,-0.25975,-0.77039,-0.58226,8.9694

> view matrix models
> #1,0.45588,0.87804,0.1457,16.728,0.43469,-0.36249,0.82441,17.753,0.77667,-0.3125,-0.54692,8.9836

> view matrix models
> #1,-0.2649,0.93513,0.2353,16.764,0.54713,-0.055177,0.83523,17.757,0.79403,0.34999,-0.49702,9.0036

> view matrix models
> #1,-0.92481,0.33815,0.17428,16.74,0.29382,0.34392,0.89185,17.78,0.24164,0.876,-0.41742,9.0355

> view matrix models
> #1,-0.9706,0.2048,0.12644,16.72,0.19981,0.39274,0.89768,17.782,0.13419,0.89656,-0.42211,9.0337

> view matrix models
> #1,-0.82466,0.5411,0.16473,16.736,0.36979,0.29539,0.88091,17.775,0.428,0.78737,-0.44369,9.025

> view matrix models
> #1,-0.93946,0.3165,0.1313,16.722,0.25433,0.38731,0.88617,17.778,0.22962,0.86592,-0.44436,9.0247

> ui mousemode right "translate selected models"

> view matrix models
> #1,-0.93946,0.3165,0.1313,16.992,0.25433,0.38731,0.88617,18.953,0.22962,0.86592,-0.44436,10.819

> select clear

> save "/Users/luisvaca/Desktop/p24 hex final.cxs"

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Currently encoding a movie  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Currently encoding a movie  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Currently encoding a movie  
Drag select of P24 hex gauss.stl, 394 of 38248 triangles  

> view matrix models
> #1,-0.93946,0.3165,0.1313,16.808,0.25433,0.38731,0.88617,18.569,0.22962,0.86592,-0.44436,10.041

> view matrix models
> #1,-0.93946,0.3165,0.1313,15.414,0.25433,0.38731,0.88617,18.709,0.22962,0.86592,-0.44436,9.881

> view matrix models
> #1,-0.93946,0.3165,0.1313,16.249,0.25433,0.38731,0.88617,18.553,0.22962,0.86592,-0.44436,10.077

> view matrix models
> #1,-0.93946,0.3165,0.1313,16.531,0.25433,0.38731,0.88617,18.668,0.22962,0.86592,-0.44436,10.015

> view matrix models
> #1,-0.93946,0.3165,0.1313,17.283,0.25433,0.38731,0.88617,18.283,0.22962,0.86592,-0.44436,8.9553

> select clear

> save "/Users/luisvaca/Desktop/p24 hex final.cxs"

——— End of log from Mon Sep 29 11:55:22 2025 ———

> view name session-start

opened ChimeraX session  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/luisvaca/Desktop/movie1.mp4

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/toolbar/tool.py", line 185, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/toolshed/__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/__init__.py", line 66, in run_provider  
shortcuts.run_provider(session, name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 1394, in run_provider  
keyboard_shortcuts(session).try_shortcut(name)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 403, in try_shortcut  
self.run_shortcut(keys)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 421, in run_shortcut  
sc.run(self.session, status = self._enabled)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 340, in run  
f(s)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 1312, in save_spin_movie  
run(session, cmd)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/shortcuts/shortcuts.py", line 537, in run  
run_command(session, command, **kw)  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 202, in movie_encode  
encode_op(session, output[-1], format, quality, qscale, bitrate,  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/moviecmd.py", line 260, in encode_op  
movie.start_encoding(output, f['ffmpeg_name'], output_size, f['ffmpeg_codec'],
"yuv420p", f['size_restriction'],  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/movie.py", line 324, in start_encoding  
self.encoder.run(Status_Reporter())  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/movie/encode.py", line 232, in run  
p = Popen(self.arg_list, stdin=DEVNULL, stdout=PIPE, stderr=PIPE)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1026, in __init__  
self._execute_child(args, executable, preexec_fn, close_fds,  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child  
raise child_exception_type(errno_num, err_msg, err_filename)  
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'  
  
PermissionError: [Errno 13] Permission denied:
'/Applications/ChimeraX-1.10.app/Contents/bin/ffmpeg'  
  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py",
line 1950, in _execute_child  
raise child_exception_type(errno_num, err_msg, err_filename)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-23.7.3
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,3
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 1.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 2092.0.0.0.0 (iBridge: 23.16.10350.0.0,0)
      OS Loader Version: 583~2317

Software:

    System Software Overview:

      System Version: macOS 15.7 (24G222)
      Kernel Version: Darwin 24.6.0
      Time since boot: 2 hours, 43 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 645:

      Chipset Model: Intel Iris Plus Graphics 645
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea6
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Mirror: On
          Mirror Status: Hardware Mirror
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        S27F350:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: H4ZH500152  
          Main Display: Yes
          Mirror: On
          Mirror Status: Master Mirror
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 0.00


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.5.0
    build: 1.2.2.post1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.2
    coverage: 7.9.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.4
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14