GPU failure after large image save

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10.dev202503060250 (2025-03-06 02:50:10 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Current thread 0x0000ede0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10.dev202503060250\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
  File "C:\Program Files\ChimeraX 1.10.dev202503060250\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
  File "C:\Program Files\ChimeraX 1.10.dev202503060250\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.10.dev202503060250 (2025-03-06)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 5ED2 fromDatabase pdb format mmcif

5ed2 title:  
Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA
sequence derived from human GLI1 gene [more info...]  
  
Chain information for 5ed2 #1  
---  
Chain | Description | UniProt  
A D | Double-stranded RNA-specific editase 1 | RED1_HUMAN 299-701  
B E | RNA (5'-R(P*GP*CP*UP*CP*GP*CP*GP*AP*UP*GP*CP*UP*(8AZ)P*GP*AP*GP*GP*GP*CP*UP*CP*UP*G)-3') |   
C F | RNA (5'-R(P*CP*AP*GP*AP*GP*CP*CP*CP*CP*CP*CP*AP*GP*CP*AP*UP*CP*GP*CP*GP*AP*GP*C)-3') |   
  
Non-standard residues in 5ed2 #1  
---  
8AZ — 8-aza-nebularine-5'-monophosphate  
IHP — inositol hexakisphosphate (myo-inositol hexakisphosphate; inositol
1,2,3,4,5,6-hexakisphosphate)  
ZN — zinc ion  
  
5ed2 mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  
1 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
Drag select of 571 atoms, 6 pseudobonds  

> select up

796 atoms, 833 bonds, 6 pseudobonds, 76 residues, 2 models selected  

> select up

1745 atoms, 1864 bonds, 6 pseudobonds, 149 residues, 2 models selected  

> select up

3994 atoms, 4169 bonds, 6 pseudobonds, 431 residues, 2 models selected  

> delete atoms (#!1 & sel)

> delete bonds (#!1 & sel)

Drag select of 37 atoms, 36 bonds  

> delete atoms sel

> delete bonds sel

> hide atoms

> show cartoons

> nucleotides atoms

> style nucleic stick

Changed 975 atom styles  

> nucleotides ladder

> show atoms

> hide atoms

Drag select of 9 residues  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> show sel atoms

> select clear

> open 9B84 fromDatabase pdb format mmcif

Summary of feedback from opening 9B84 fetched from pdb  
---  
note | Fetching compressed mmCIF 9b84 from http://files.rcsb.org/download/9b84.cif  
  
9b84 title:  
Cryo-EM structure of human ADAR1 in complex with dsRNA derived from HT2C gene
[more info...]  
  
Chain information for 9b84 #2  
---  
Chain | Description | UniProt  
A B | Maltodextrin-binding protein,Double-stranded RNA-specific adenosine deaminase | C3SHQ8_ECOLX -264-101, DSRAD_HUMAN 127-1226  
F | RNA (66-MER) |   
  
Non-standard residues in 9b84 #2  
---  
8AZ — 8-aza-nebularine-5'-monophosphate  
IHP — inositol hexakisphosphate (myo-inositol hexakisphosphate; inositol
1,2,3,4,5,6-hexakisphosphate)  
ZN — zinc ion  
  

> ui tool show Matchmaker

Drag select of 64 residues  

> matchmaker #!2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5ed2, chain A (#1) with 9b84, chain A (#2), sequence alignment
score = 864.1  
RMSD between 283 pruned atom pairs is 1.104 angstroms; (across all 367 pairs:
4.016)  
  

> matchmaker #!2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5ed2, chain A (#1) with 9b84, chain A (#2), sequence alignment
score = 864.1  
RMSD between 283 pruned atom pairs is 1.104 angstroms; (across all 367 pairs:
4.016)  
  

> matchmaker #!2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5ed2, chain A (#1) with 9b84, chain A (#2), sequence alignment
score = 864.1  
RMSD between 283 pruned atom pairs is 1.104 angstroms; (across all 367 pairs:
4.016)  
  
Drag select of 156 atoms, 266 residues, 5 pseudobonds, 141 bonds  

> select up

2473 atoms, 2515 bonds, 5 pseudobonds, 321 residues, 3 models selected  

> select up

2749 atoms, 2799 bonds, 5 pseudobonds, 357 residues, 3 models selected  

> delete atoms (#!2 & sel)

> delete bonds (#!2 & sel)

Drag select of 1 atoms  

> delete atoms sel

> delete bonds sel

> hide #!1 models

> show #!1 models

> hide #!2 models

Drag select of 4 residues, 6 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> hide sel cartoons

> hide sel atoms

> select clear

> show #!2 models

Drag select of 7 residues, 1 pseudobonds, 20 shapes  

> select up

238 atoms, 263 bonds, 1 pseudobond, 11 residues, 2 models selected  

> select up

1231 atoms, 1374 bonds, 1 pseudobond, 58 residues, 2 models selected  

> hide sel atoms

> hide sel cartoons

Alignment identifier is 2/F  

> select clear

Alignment identifier is 1/A  
Alignment identifier is 1/B  
Alignment identifier is 1/C  
Alignment identifier is 2/A  
Alignment identifier is 2/F  

> hide atoms

> select ::name="8AZ"::name="IHP"::name="ZN"

119 atoms, 120 bonds, 1 pseudobond, 7 residues, 3 models selected  

> show sel atoms

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

22 atoms, 24 bonds, 1 residue, 1 model selected  

> select up

490 atoms, 547 bonds, 23 residues, 1 model selected  

> select down

22 atoms, 24 bonds, 1 residue, 1 model selected  

> select up

490 atoms, 547 bonds, 23 residues, 1 model selected  

> hide sel atoms

> hide sel cartoons

> hide sel surfaces

> select #2/F:6@N9

1 atom, 1 residue, 1 model selected  

> select up

22 atoms, 24 bonds, 1 residue, 1 model selected  

> select up

1231 atoms, 1374 bonds, 58 residues, 1 model selected  

> hide sel atoms

> select #1/A:459

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:459-472

115 atoms, 120 bonds, 14 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 115 atom styles  

> color sel lime

> select clear

> hide #!2 models

> show #!2 models

> hide #!2 models

Drag select of 4 residues  

> select up

192 atoms, 198 bonds, 22 residues, 1 model selected  

> select up

3019 atoms, 3081 bonds, 385 residues, 1 model selected  

> color sel cyan

> select clear

> color #1 #82c9dcff

Destroying pre-existing alignment with identifier 1/A  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
Alignment identifier is 1/C  
Alignment identifier is 2/A  
Alignment identifier is 2/F  

> select #1/A:459

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:459-472

115 atoms, 120 bonds, 14 residues, 1 model selected  

> color sel #06cb17ff

> select clear

> hide #!1 atoms

> select add #1

4031 atoms, 4205 bonds, 58 pseudobonds, 433 residues, 3 models selected  

> select subtract #1

Nothing selected  

> select clear

> select ::name="IHP"

72 atoms, 72 bonds, 2 residues, 2 models selected  

> show sel & #!1 atoms

> color (#!1 & sel) orange

> color (#!1 & sel) byhetero

> select clear

Drag select of 1 residues  

> show sel atoms

> color sel blue

> select clear

Drag select of 1 residues  

> show sel atoms

> color sel red

> select clear

> set bgColor white

> set bgColor #ffffff00

> lighting simple

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> graphics silhouettes true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting flat

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> graphics silhouettes false

> graphics silhouettes true

> lighting soft

> lighting shadows true intensity 0.5

> hide #!1 models

> show #!2 models

> show #!1 models

> hide #!1 models

> color #2 #51a8ebff

> select clear

> select ::name="8AZ"::name="IHP"::name="ZN"

119 atoms, 120 bonds, 1 pseudobond, 7 residues, 3 models selected  

> hide sel & #!2 atoms

> select ::name="IHP"

72 atoms, 72 bonds, 2 residues, 2 models selected  

> show sel & #!2 atoms

> color (#!2 & sel) orange

> color (#!2 & sel) byhetero

> select clear

Drag select of 1 residues  

> show sel atoms

> style sel sphere

Changed 8 atom styles  

> color sel red

Drag select of 1 residues  

> show sel atoms

> style sel sphere

Changed 11 atom styles  

> color sel blue

> select clear

> select #2/A:977

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #2/A:977

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #2/A:977-985

55 atoms, 54 bonds, 9 residues, 1 model selected  

> select #2/A:986

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #2/A:986-990

39 atoms, 40 bonds, 5 residues, 1 model selected  

> select #2/A:973

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #2/A:973

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select
> #2/A:840-856,860-864,910-930,967-971,973-977,1021-1027,1036-1046,1049-1054,1072-1082,1089-1095,1157-1179,1181-1206

1148 atoms, 1159 bonds, 144 residues, 1 model selected  

> select #2/A:988

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select #2/A:988-990

22 atoms, 23 bonds, 3 residues, 1 model selected  

> select #2/A:974-975

11 atoms, 10 bonds, 2 residues, 1 model selected  

> select #2/A:974-990

111 atoms, 112 bonds, 17 residues, 1 model selected  

> select #2/A:990-991

14 atoms, 14 bonds, 2 residues, 1 model selected  

> select #2/A:990-991

14 atoms, 14 bonds, 2 residues, 1 model selected  

> select #2/A:973

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #2/A:973-991

123 atoms, 124 bonds, 19 residues, 1 model selected  

> show #!1 models

> hide #!1 models

> select #2/A:973

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #2/A:973-993

143 atoms, 145 bonds, 21 residues, 1 model selected  

> color sel lime

> select clear

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> show #!2 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> lighting flat

> lighting full

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows false

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_vs_ADAR1__ADAR2.png" width 859 height 570
> supersample 3

> show #!2 models

> hide #!1 models

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_vs_ADAR1__ADAR1.png" width 859 height 570
> supersample 3

> hide #!2 models

> show #!1 models

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_vs_ADAR1__ADAR2.png" width 6400 height 4247
> supersample 1

> hide #!1 models

> show #!2 models

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_vs_ADAR1__ADAR1.png" width 6400 height 4247
> supersample 1

> show #!1 models

> hide #!2 models

Drag select of 75 residues  

> color sel #82c9dcff

> select clear

> select #1/C:23

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select #1/C

485 atoms, 541 bonds, 23 residues, 1 model selected  

> select #1/B:23

23 atoms, 25 bonds, 1 residue, 1 model selected  

> select #1/B

490 atoms, 547 bonds, 23 residues, 1 model selected  

> show sel cartoons

> select #1/C:23

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select #1/C

485 atoms, 541 bonds, 23 residues, 1 model selected  

> show sel cartoons

Drag select of 4 residues  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> show sel atoms

> color sel dark gray

> select clear

> select #1/A:468

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #1/A:468-469

13 atoms, 12 bonds, 2 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 13 atom styles  

> color sel lime

> select clear

> select #1/A:340

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:340-341

16 atoms, 15 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #55007fff

> color sel #4f027fff

> color sel #4b037fff

> color sel #46057fff

> color sel #38097fff

> color sel #300b7fff

> color sel #2d0d7fff

> color sel #2e0e7fff

> color sel #2c107fff

> color sel #30107fff

> color sel #33107fff

> color sel #35107fff

> color sel #3f117fff

> color sel #42117fff

> color sel #44117fff

> color sel #48117fff

> color sel #4c117fff

> color sel #4e117fff

> color sel #5b1d7fff

> color sel #5f297fff

> color sel #64357fff

> color sel #65397fff

> color sel #663c7fff

> color sel #673c7fff

> color sel #653c7fff

> color sel #633c7fff

> color sel #55346dff

> color sel #54336cff

> color sel #53326aff

> color sel #4e2f64ff

> color sel #4d2f63ff

> color sel #4c2e61ff

> color sel #4a2d5fff

> color sel #4c2e61ff

> color sel #4d2f62ff

> color sel #ffffffff

> color sel #cf3effff

> color sel #cf3dffff

> color sel #c637ffff

> color sel #c635ffff

> color sel #ba2fffff

> color sel #b22cffff

> color sel #b12bffff

> color sel #b12affff

> color sel #c227ffff

> color sel #d426ffff

> color sel #db25ffff

> color sel #de23ffff

> color sel #e522ffff

> color sel #e521ffff

> color sel #ec21ffff

> color sel #e521ffff

> color sel #da21ffff

> color sel #cf22ffff

> color sel #c430ffff

> color sel #c533ffff

> color sel #b355ffff

> color sel #a95dffff

> color sel #a860ffff

> color sel #a362ffff

> color sel #a463ffff

> color sel #aa65ffff

> color sel #b265ffff

> color sel #b866ffff

> color sel #c067ffff

> color sel #a95be1ff

> color sel #a85adfff

> color sel #a458daff

> color sel #8a4ab8ff

> color sel #7941a1ff

> color sel #68388aff

> color sel #4d2a67ff

> color sel #47265fff

> color sel #47265eff

> color sel #5c6369ff

> color sel #515151ff

> color sel #ffffffff

> color sel #98ebffff

> color sel #b6ffffff

> color sel #b7ffffff

> color sel #b9ffffff

> color sel #baffffff

> color sel #47265eff

> select clear

> select #1/A:360

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #1/A:360-361

11 atoms, 10 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #4a2862ff

> color sel #4a2863ff

> color sel #4b2864ff

> color sel #4d2966ff

> color sel #4d2a67ff

> color sel #4e2a68ff

> color sel #502b6aff

> color sel #502b6bff

> color sel #512c6cff

> color sel #522c6dff

> color sel #572f74ff

> color sel #593076ff

> color sel #5a3078ff

> color sel #613481ff

> color sel #69398cff

> select clear

> select #1/A:416

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:416-417

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #1/A:417

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:417-418

17 atoms, 16 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #78409fff

> color sel #7941a1ff

> color sel #7d43a6ff

> color sel #8447afff

> color sel #8748b3ff

> color sel #8749b4ff

> select clear

> select #1/A:430

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #1/A:430-431

20 atoms, 19 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #8c4bbaff

> color sel #8d4cbcff

> color sel #8f4dbeff

> color sel #924ec2ff

> color sel #934fc3ff

> color sel #9450c5ff

> color sel #9550c6ff

> color sel #9650c7ff

> color sel #9852caff

> color sel #9b53ceff

> color sel #9c54d0ff

> color sel #9d54d1ff

> color sel #9f55d3ff

> color sel #9f56d4ff

> color sel #a056d5ff

> color sel #a257d8ff

> color sel #a358d9ff

> color sel #a458daff

> select clear

> select #1/A:495

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/A:495-496

14 atoms, 13 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #ad5de6ff

> color sel #ae5de7ff

> color sel #b360eeff

> color sel #b762f3ff

> color sel #b763f4ff

> color sel #ba64f8ff

> color sel #bc65faff

> color sel #be66fdff

> color sel #bf67feff

> color sel #c067ffff

> select clear

> select #1/A:495

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/A:495-496

14 atoms, 13 bonds, 2 residues, 1 model selected  

> color sel #df69ffff

> color sel #df6affff

> color sel #e26cffff

> color sel #ff7efdff

> color sel #ff83f5ff

> color sel #ff86f5ff

> color sel #ff89efff

> color sel #ff8cecff

> color sel #ff8cf0ff

> color sel #ff8cf4ff

> color sel #ff8cf9ff

> color sel #ff8cfdff

> color sel #fb8cffff

> select clear

> select #1/A:585

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/A:585-586

14 atoms, 13 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #ee8effff

> color sel #e493ffff

> color sel #d895ffff

> color sel #d898ffff

> color sel #d899ffff

> color sel #de9bffff

> color sel #e7a0ffff

> color sel #f7a4ffff

> color sel #f9a5ffff

> color sel #ffa5ffff

> color sel #ffa6ffff

> color sel #ffa7ffff

> color sel #ffa9ffff

> color sel #ffaaffff

> color sel #ffacffff

> color sel #ffafffff

> color sel #ffb2ffff

> color sel #ffb3feff

> color sel #ffb4feff

> color sel #ffb4fbff

> color sel #ffb4feff

> color sel #ffb3feff

> color sel #ffb2ffff

> color sel #ffaeffff

> color sel #ffacffff

> color sel #ffabffff

> color sel #ffaaffff

> color sel #ffa9ffff

> color sel #fca7ffff

> color sel #f9a6ffff

> color sel #f9a5ffff

> color sel #f9a4ffff

> color sel #f9a2ffff

> color sel #f9a1ffff

> select clear

> select #1/A:620

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #1/A:620-621

17 atoms, 16 bonds, 2 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 17 atom styles  

> color sel #f79dffff

> color sel #f79effff

> color sel #ffb3ffff

> color sel #ffb8ffff

> color sel #ffb9ffff

> color sel #ffbcffff

> color sel #ffc1ffff

> color sel #ffc2ffff

> color sel #ffc4ffff

> color sel #fbc5ffff

> color sel #f8c6ffff

> color sel #fbbeffff

> color sel #fbbdffff

> color sel #f9b8ffff

> color sel #f7b7ffff

> select clear

> select #1/A:644

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select #1/A:644-645

13 atoms, 13 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #f5b9ffff

> color sel #f5bcffff

> color sel #f8c6ffff

> color sel #fac6ffff

> color sel #fccdffff

> color sel #fccfffff

> color sel #fcd2ffff

> color sel #fed3ffff

> color sel #ffd4feff

> color sel #ffd7feff

> color sel #ffd8feff

> select clear

> select #1/A:654-655

16 atoms, 16 bonds, 2 residues, 1 model selected  

> select #1/A:654-655

16 atoms, 16 bonds, 2 residues, 1 model selected  

> show sel atoms

> color sel #ffd9fbff

> color sel #ffd9fcff

> color sel #ffe5fcff

> color sel #ffebfcff

> color sel #fff0fdff

> color sel #fff3fdff

> color sel #fff4fdff

> color sel #fff4feff

> select clear

> view orient

> view

> view orient

> ui tool show "Side View"

> view orient

> lighting simple

> lighting shadows true

> lighting shadows false

> lighting flat

> lighting full

> lighting soft

> lighting simple

> lighting shadows true

> lighting shadows false

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_view1.png" width 6400 height 4649
> supersample 1

> turn

> preset "overall look" "publication 1 (silhouettes)"

Using preset: Overall Look / Publication 1 (Silhouettes)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t
    lighting depthCue f

  

> lighting depthCue true

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_view1.png" width 6400 height 4649
> supersample 1

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_view2.png" width 6400 height 4649
> supersample 1

QWindowsWindow::setGeometry: Unable to set geometry 708x1046+1860+604 (frame:
734x1117+1847+546) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 698x1014+1865+631 (frame:
724x1085+1852+573) margins: 13, 58, 13, 13 minimum size: 70x42 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1048600, y=1048645), mintrack=POINT(x=166, y=155)))  

QWindowsWindow::setGeometry: Unable to set geometry 690x232+2308+436 (frame:
716x303+2295+378) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 680x200+2313+463 (frame:
706x271+2300+405) margins: 13, 58, 13, 13 minimum size: 70x42 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1048600, y=1048645), mintrack=POINT(x=166, y=155)))  

QWindowsWindow::setGeometry: Unable to set geometry 690x232+2262+722 (frame:
716x303+2249+664) on QWidgetWindow/"QDockWidgetClassWindow" on
"\\\\.\DISPLAY1". Resulting geometry: 680x200+2267+749 (frame:
706x271+2254+691) margins: 13, 58, 13, 13 minimum size: 70x42 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=1048600, y=1048645), mintrack=POINT(x=166, y=155)))  

> select #1/A:360

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select #1/A:360-361

11 atoms, 10 bonds, 2 residues, 1 model selected  

> select #1/A:585@CB

1 atom, 1 residue, 1 model selected  
Drag select of 3 atoms, 1 residues  

> select clear

Drag select of 2 atoms  

> select clear

Drag select of 4 atoms  
Drag select of 9 residues  

> select up

356 atoms, 361 bonds, 41 residues, 1 model selected  

> select up

3019 atoms, 3081 bonds, 385 residues, 1 model selected  

> ui tool show "Color Actions"

> select clear

Drag select of 7 residues  

> select up

257 atoms, 262 bonds, 32 residues, 1 model selected  

> select up

3019 atoms, 3081 bonds, 385 residues, 1 model selected  

> ui tool show "Render/Select by Attribute"

> color byattribute a:bfactor #!1-2 target abcs palette
> 0.63,#06cb17:96.665,#fbff00:192.7,red

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> select clear

Drag select of 9 residues, 7 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> select up

4031 atoms, 4205 bonds, 433 residues, 1 model selected  

> select down

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> color sel dark gray

> select clear

> color byattribute a:bfactor #!1-2 target abcs palette
> 0.63,#06cb17:96.665,#fbff00:137.286,red

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 0.63,#06cb17:96.665,#fbff00:160.297,red

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 58.3919,#06cb17:96.665,#fbff00:160.297,red

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 58.3919,#06cb17:109.814,#fbff00:160.297,red

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  
Drag select of 6 residues, 4 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> color sel dark gray

> select clear

> turn

> select #1/A:801@C3

1 atom, 1 residue, 1 model selected  

> undo

Drag select of 1 atoms  

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

36 atoms, 36 bonds, 1 residue, 1 model selected  

> color sel orange

> color sel byhetero

> select clear

> color byattribute a:bfactor #!1-2 target abcs palette
> 58.3919,#06cb17:109.814,white:160.297,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  
Drag select of 2 residues, 3 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> color sel dark gray

> select clear

> turn

> color byattribute a:bfactor #!1-2 target abcs palette
> 58.3919,#06cb17:98.0738,white:160.297,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 66.8448,#06cb17:98.0738,white:160.297,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> turn

> color byattribute a:bfactor #!1-2 target abcs palette
> 66.8448,#06cb17:105.118,white:160.297,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 66.8448,#06cb17:105.118,white:151.374,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> turn

Drag select of 2 residues, 1 shapes  

> select up

485 atoms, 541 bonds, 23 residues, 1 model selected  

> select up

4031 atoms, 4205 bonds, 433 residues, 1 model selected  

> select clear

Drag select of 2 residues, 1 shapes  

> select up

485 atoms, 541 bonds, 23 residues, 1 model selected  

> select up

4031 atoms, 4205 bonds, 433 residues, 1 model selected  

> select clear

Drag select of 8 residues, 9 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> color sel dark gray

> select clear

> select ::name="IHP"

72 atoms, 72 bonds, 2 residues, 2 models selected  

> color (#!1 & sel) orange

> color (#!1 & sel) byhetero

> select clear

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 859 height 624
> supersample 3

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view2.png" width 859 height 624
> supersample 3

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 6400 height
> 4649 supersample 1

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view2.png" width 6400 height
> 4649 supersample 1

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 6400 height
> 4649 supersample 1

> ui tool show "Color Key"

> ui mousemode right "color key"

> key delete

> select clear

> ui tool show "Color Key"

> ui mousemode right "color key"

> key blue:min white: #565d62:max

> key blue:min white: #4c4c4c:max

> key blue:min white: #9d9d90:max

> key blue:min white: #c8c5a9:max

> key blue:min white: #4d4d4d:max

> key blue:min white: #a6e2ff:max

> key blue:min white: #4d4d4d:max

> key blue:min white: #2d2d2d:max

> key blue:min white: #4b4b4b:max

> key blue:min white: black:max

> key blue:min white: #06cb17:max

> key blue:min #575e64: #06cb17:max

> key blue:min #4d4d4d: #06cb17:max

> key blue:min #bfc8a5: #06cb17:max

> key blue:min black: #06cb17:max

> key blue:min white: #06cb17:max

> key blue:min black: #06cb17:max

> key blue:min white: #06cb17:max

> key #565c62:min white: #06cb17:max

> key #674c4c:min white: #06cb17:max

> key #b7c8b1:min white: #06cb17:max

> key #4b4b4b:min white: #06cb17:max

> key #dfc0ff:min white: #06cb17:max

> key #4b4b4b:min white: #06cb17:max

> key #171717:min white: #06cb17:max

> key black:min white: #06cb17:max

> key #2d2d2d:min white: #06cb17:max

> key black:min white: #06cb17:max

> key #2d2d2d:min white: #06cb17:max

> key black:min white: #06cb17:max

> key #aa55ff:min white: #06cb17:max

> key #06cb17:max white: #aa55ff:min

> key #06cb17:1 white: #aa55ff:min

> key #06cb17:15 white: #aa55ff:min

> key #06cb17:150 white: #aa55ff:min

> key #06cb17:150 white: #aa55ff:1

> key #06cb17:150 white: #aa55ff:15

> key #06cb17:150 white: #aa55ff:150

> key #06cb17:7 white: #aa55ff:150

> key #06cb17:70 white: #aa55ff:150

> key #06cb17:6 white: #aa55ff:150

> key #06cb17:65 white: #aa55ff:150

> key #06cb17:65 white:1 #aa55ff:150

> key #06cb17:65 white:10 #aa55ff:150

> key #06cb17:65 white:105 #aa55ff:150

> color byattribute a:bfactor #!1-2 target abcs palette
> 65,#06cb17:105,white:145,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> key #06cb17:65 white: #aa55ff:150

> undo

> key pos 0.7,0.08

> key pos 0.705821,0.815577

> key pos 0.745052,0.146635 size 0.0389988,0.435096

> key pos 0.844004,0.459936

> color byattribute a:bfactor #!1-2 target abcs palette
> 70,#06cb17:105,white:145,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 70,#06cb17:105,white:140,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 70,#06cb17:105,white:140,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> color byattribute a:bfactor #!1-2 target abcs palette
> 70,#06cb17:105,white:140,#aa55ff

Collection has bfactors  
8263 atoms, 878 residues, atom bfactor range 0.63 to 193  

> ui tool show "Color Key"

> ui mousemode right "color key"

> key #06cb17:65 white: #aa55ff:1

> key #06cb17:65 white: #aa55ff:14

> key #06cb17:65 white: #aa55ff:140

> key #06cb17:7 white: #aa55ff:140

> key #06cb17:70 white: #aa55ff:140

> ui mousemode right translate

> ui mousemode middle 'color key'

> ui mousemode middle translate

> ui mousemode right 'color key'

> key border false

> key borderColor #bfbfbf

> key borderColor default

> key labelSide right/bottom

> turn

Drag select of 7 residues, 6 shapes  

> select up

975 atoms, 1088 bonds, 46 residues, 1 model selected  

> color sel dark gray

> select clear

> select ::name="IHP"

72 atoms, 72 bonds, 2 residues, 2 models selected  

> color (#!1 & sel) orange

> color (#!1 & sel) byhetero

> turn

> select clear

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 6400 height
> 4649 supersample 1

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view2.png" width 6400 height
> 4649 supersample 1

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 6400 height
> 4649 supersample 1

> turn

Drag select of 1 atoms, 1 residues  

> select clear

Drag select of 5 residues  

> select clear

Drag select of 2 atoms, 1 residues, 4 shapes  
Drag select of 2 atoms, 4 residues, 1 bonds  

> select clear

> select #1/A:316

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #1/A:316-317

10 atoms, 9 bonds, 2 residues, 1 model selected  

> color sel blue

> undo

> select clear

> select #1/A:316@CB

1 atom, 1 residue, 1 model selected  

> select up

5 atoms, 4 bonds, 1 residue, 1 model selected  

> color sel blue

> select clear

> turn

> select #1/A:700@CA

1 atom, 1 residue, 1 model selected  

> select up

7 atoms, 6 bonds, 1 residue, 1 model selected  

> color sel red

> select clear

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view1.png" width 6400 height
> 4649 supersample 3

> turn

> save "C:/Users/alexm/OneDrive/Documents/2024__ADAR_paper/ADOBE IMAGES
> NEW/CHIMERA EXPORT/ADAR2_split_sites_BFactor_view2.png" width 6400 height
> 4649 supersample 3

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "The operation
completed successfully."  

monitorData: Unable to obtain handle for monitor '\\\\.\DISPLAY1', defaulting
to 96 DPI.  

Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.  

QQuickWidget: failed to create resized output texture of size 1718x814  

Failed to create depth-stencil buffer: COM error 0x887a0005: The GPU device
instance has been suspended. Use GetDeviceRemovedReason to determine the
appropriate action.  

QQuickWidget: failed to create resized depth/stencil buffer of size 1718x814  

D3D: Failed to share D3D11 texture (COM error 0x887a0005: The GPU device
instance has been suspended. Use GetDeviceRemovedReason to determine the
appropriate action.). This will result in failed rendering. Report the bug,
and try restarting with QTWEBENGINE_CHROMIUM_FLAGS=--disble-gpu  

Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.  

QQuickWidget: failed to create resized output texture of size 1150x784  

Failed to create depth-stencil buffer: COM error 0x887a0005: The GPU device
instance has been suspended. Use GetDeviceRemovedReason to determine the
appropriate action.  

QQuickWidget: failed to create resized depth/stencil buffer of size 1150x784  

Device loss detected in ResizeBuffers()  

Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.  


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | QWindowsWindow::setGeometry: Unable to set geometry 3840x1760-960+116 (frame: 3866x1831-973+58) on QWidgetWindow/"MainWindowClassWindow" on "\\\\.\DISPLAY2". Resulting geometry: 3840x1759-960+116 (frame: 3866x1830-973+58) margins: 13, 58, 13, 13 minimum size: 63x49 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=0, y=0), mintrack=POINT(x=152, y=169)))  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.10.dev202503060250 (2025-03-06)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 560.94
OpenGL renderer: NVIDIA GeForce RTX 4050 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: SAMSUNG ELECTRONICS CO., LTD.
Model: 960XFH
OS: Microsoft Windows 11 Home (Build 26100)
Memory: 16,717,942,784
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i7-13700H
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.2.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.2.0
    build: 1.2.2.post1
    certifi: 2025.1.31
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.1
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.19.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.1
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.5
    ChimeraX-AtomicLibrary: 14.1.13
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.dev202503060250
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.5.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.7
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.7
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-ProfileGrids: 1.0.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.44
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.5
    contourpy: 1.3.1
    coverage: 7.6.12
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.13
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.17.0
    fonttools: 4.56.0
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h5py: 3.13.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.0.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.5
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    narwhals: 1.33.0
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 2.2.4
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    plotly: 6.0.1
    pluggy: 1.5.0
    prompt_toolkit: 3.0.50
    psutil: 6.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.0.3401
    pyparsing: 3.2.1
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.3.5
    pytest-cov: 6.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2025.1
    pywin32: 306
    pyzmq: 26.2.1
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 75.8.2
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.1.3
    sphinx-autodoc-typehints: 3.0.1
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    toml: 0.10.2
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2025.1
    urllib3: 2.3.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.13
    WMI: 1.5.1

[Tom Goddard]

Lots of problems with an external display and GPU. The GPU is an Nvidia RTX 4050, pretty recent so I don't think it is a driver problem. This Samsung 960XFH is a Galaxy Book3 laptop and my guess is the user unplugged or plugged in an external display and Windows and Samsung and the GPU driver could not handle the switch.

"Unable to open monitor interface to



.
\DISPLAY1:" "The operation
completed successfully."

monitorData: Unable to obtain handle for monitor '

.\DISPLAY1', defaulting
to 96 DPI.

Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.

QQuickWidget: failed to create resized output texture of size 1718x814
D3D: Failed to share D3D11 texture (COM error 0x887a0005: The GPU device
instance has been suspended. Use GetDeviceRemovedReason to determine the
appropriate action.). This will result in failed rendering. Report the bug,
and try restarting with QTWEBENGINE_CHROMIUM_FLAGS=--disble-gpu
Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.

QQuickWidget: failed to create resized output texture of size 1150x784

Failed to create depth-stencil buffer: COM error 0x887a0005: The GPU device
instance has been suspended. Use GetDeviceRemovedReason to determine the
appropriate action.

QQuickWidget: failed to create resized depth/stencil buffer of size 1150x784

Device loss detected in ResizeBuffers()

Failed to create 2D texture: COM error 0x887a0005: The GPU device instance has
been suspended. Use GetDeviceRemovedReason to determine the appropriate
action.