Orthoplanes: self.view.drawing.parent is None

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10.1 (2025-07-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\Gulshan maurya\Downloads\cryosparc_P29_J282_map_sharp.mrc"
> format mrc

Opened cryosparc_P29_J282_map_sharp.mrc as #1, grid size 180,180,180, pixel
1.52, shown at level 0.497, step 1, values float32  

> open "C:\Users\Gulshan maurya\Downloads\cryosparc_P29_J191_map_half_A.mrc"
> format mrc

Opened cryosparc_P29_J191_map_half_A.mrc as #2, grid size 256,256,256, pixel
1.3, shown at level 0.0535, step 1, values float32  

> hide #!1 models

> surface dust #2 size 13

[Repeated 1 time(s)]

> volume #2 level 0.06153

> open 7xl4 fromDatabase pdb format mmcif

7xl4 title:  
Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes
with transcription factor SutA (closed lobe) [more info...]  
  
Chain information for 7xl4 #3  
---  
Chain | Description | UniProt  
A B | DNA-directed RNA polymerase subunit alpha | RPOA_PSEAE 1-333  
C | DNA-directed RNA polymerase subunit beta | RPOB_PSEAE 1-1357  
D | DNA-directed RNA polymerase subunit beta' | RPOC_PSEAE 2-1399  
E | DNA-directed RNA polymerase subunit omega | RPOZ_PSEAE 1-88  
F | RNA polymerase sigma factor RpoS | RPOS_PSEAE 1-334  
G | Transcriptional factor SutA | Q9HTR9_PSEAE 1-105  
  
Non-standard residues in 7xl4 #3  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> select /G:58-88

194 atoms, 194 bonds, 31 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> select /F:57-334

1895 atoms, 1912 bonds, 278 residues, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> hide sel atoms

> select add #3

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 3 models selected  

> show sel cartoons

> show sel surfaces

[Repeated 1 time(s)]

> hide #!2 models

> volume #1 level 0.3039

> ui mousemode right "move picked models"

> view matrix models #3,1,0,0,97.921,0,1,0,-16.692,0,0,1,-5.5813

> view matrix models #3,1,0,0,91.359,0,1,0,-36.433,0,0,1,113.56

> volume #1 level 0.2032

> view matrix models #3,1,0,0,83.858,0,1,0,-19.139,0,0,1,116.14

> ui mousemode right "rotate selected models"

> view matrix models
> #3,-0.45924,0.88523,0.073959,148.29,0.87783,0.43949,0.19043,-85.518,0.13607,0.15237,-0.97891,344.38

> view matrix models
> #3,0.76514,0.22004,-0.6051,166.4,-0.53815,0.7345,-0.41339,154.47,0.35348,0.64194,0.68041,13.124

> view matrix models
> #3,0.18185,0.95638,0.22861,25.042,-0.60102,-0.075903,0.79562,119.98,0.77827,-0.28208,0.561,107.97

> view matrix models
> #3,-0.89899,0.43339,0.063223,280.02,0.01526,-0.11327,0.99345,10.624,0.43771,0.89406,0.095216,42.939

> view matrix models
> #3,-0.8402,0.54165,0.026121,260.45,0.057125,0.040504,0.99755,-18.967,0.53926,0.83963,-0.064973,58.448

> ui mousemode right "move picked models"

> view matrix models
> #3,-0.8402,0.54165,0.026121,163.66,0.057125,0.040504,0.99755,-57.037,0.53926,0.83963,-0.064973,-16.452

> view matrix models
> #3,-0.8402,0.54165,0.026121,157.16,0.057125,0.040504,0.99755,-36.468,0.53926,0.83963,-0.064973,-52.844

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 196  
shifted from previous position = 15.7  
rotated from previous position = 33.1 degrees  
atoms outside contour = 6860, contour level = 0.20324  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91531832 0.39249671 -0.09021476 210.19031888  
-0.25244550 -0.38463591 0.88787752 94.37815561  
0.31378917 0.83546487 0.45114832 -88.68489276  
Axis -0.06870774 -0.52960878 -0.84545478  
Axis point 120.41646778 50.24351840 0.00000000  
Rotation angle (degrees) 157.57849704  
Shift along axis 10.55386374  
  

> view matrix models #1,1,0,0,-2.1682,0,1,0,1.3486,0,0,1,-3.9056

> undo

> select subtract #3

7 models selected  

> view matrix models #1,1,0,0,-4.0029,0,1,0,-3.1309,0,0,1,1.6881

> undo

> show #!2 models

> view matrix models #2,1,0,0,58.087,0,1,0,-118.3,0,0,1,36.449

> hide #!2 models

> show #!2 models

> hide #!3 models

> view matrix models #2,1,0,0,-41.564,0,1,0,-32.157,0,0,1,-11.043

> fitmap #1 inMap #2

Fit map cryosparc_P29_J282_map_sharp.mrc in map
cryosparc_P29_J191_map_half_A.mrc using 192542 points  
correlation = 0.554, correlation about mean = 0.3581, overlap = 6113  
steps = 204, shift = 17.3, angle = 21.9 degrees  
  
Position of cryosparc_P29_J282_map_sharp.mrc (#1) relative to
cryosparc_P29_J191_map_half_A.mrc (#2) coordinates:  
Matrix rotation and translation  
0.96232252 0.26540957 -0.05910267 4.58928207  
-0.27161823 0.92822789 -0.25419782 119.16029386  
-0.01260578 0.26067365 0.96534468 -10.07640458  
Axis 0.69071171 -0.06237663 -0.72043493  
Axis point 425.92470027 50.97091276 0.00000000  
Rotation angle (degrees) 21.88289839  
Shift along axis 2.99644686  
  

> volume #2 level 0.1112

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!2 models

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 156  
shifted from previous position = 18.5  
rotated from previous position = 21.9 degrees  
atoms outside contour = 6863, contour level = 0.20324  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91535970 0.39238935 -0.09026198 210.22184883  
-0.25244312 -0.38465737 0.88786890 94.37427921  
0.31367036 0.83550542 0.45115584 -88.65737991  
Axis -0.06865535 -0.52960801 -0.84545952  
Axis point 120.42486230 50.23407103 0.00000000  
Rotation angle (degrees) 157.58265188  
Shift along axis 10.54199635  
  

> show #!2 models

> volume #2 step 2

> volume style mesh

> volume #1 level 0.1871

> volume #2 level 0.08317

> volume #1 level 0.3442

> hide #!2 models

> volume #1 level 0.1912

> volume #1 color #0a0db2

> show #!2 models

> hide #!2 models

> hide #!3 models

> show #!2 models

> volume #2 level 0.1392

> show #!3 models

> hide #!3 models

> select add #2

2 models selected  

> view matrix models #2,1,0,0,-27.239,0,1,0,-28.327,0,0,1,123.51

> open "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J105_class_01_final_volume.mrc"

Opened cryosparc_P29_J105_class_01_final_volume.mrc as #4, grid size
128,128,128, pixel 3, shown at level 0.407, step 1, values float32  

> volume #4 level 0.6995

> hide #!4 models

> undo

> ui dockable true "Model Panel"

> hide #!4 models

> show #!3 models

> hide #!2 models

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 44  
shifted from previous position = 0.0273  
rotated from previous position = 0.00976 degrees  
atoms outside contour = 6514, contour level = 0.19115  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91540181 0.39231129 -0.09017418 210.21706518  
-0.25237092 -0.38480082 0.88782726 94.40784968  
0.31360556 0.83547602 0.45125532 -88.67729310  
Axis -0.06865810 -0.52955283 -0.84549386  
Axis point 120.42363663 50.26189252 0.00000000  
Rotation angle (degrees) 157.58911926  
Shift along axis 10.54905944  
  

> show #!2 models

> view matrix models #2,1,0,0,-104.68,0,1,0,-10.911,0,0,1,50.736

> view matrix models #2,1,0,0,-47.491,0,1,0,-24.988,0,0,1,-18.827

> view matrix models
> #1,0.96232,0.26541,-0.059103,-35.808,-0.27162,0.92823,-0.2542,88.722,-0.012606,0.26067,0.96534,-19.254

> undo

> view matrix models
> #1,0.96232,0.26541,-0.059103,-37.412,-0.27162,0.92823,-0.2542,86.358,-0.012606,0.26067,0.96534,-21.819

> undo

> hide #!1 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!3 models

> hide #!3 models

> show #!1 models

> fitmap #2 inMap #1

Fit map cryosparc_P29_J191_map_half_A.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 7023 points  
correlation = 0.8507, correlation about mean = 0.4535, overlap = 958.5  
steps = 100, shift = 12.3, angle = 6.58 degrees  
  
Position of cryosparc_P29_J191_map_half_A.mrc (#2) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98617243 -0.16205148 -0.03468787 11.26713665  
0.16532263 0.94747007 0.27380448 -98.56005720  
-0.01150470 -0.27575312 0.96115964 34.73342288  
Axis -0.85855294 -0.03621818 0.51144412  
Axis point 0.00000000 52.43025402 368.48153761  
Rotation angle (degrees) 18.66587325  
Shift along axis 11.66043802  
  

> view matrix models
> #2,0.99357,0.11182,-0.017518,-51.199,-0.11148,0.99358,0.01925,-11.153,0.019558,-0.017174,0.99966,-18.746

> fitmap #2 inMap #1

Fit map cryosparc_P29_J191_map_half_A.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 7023 points  
correlation = 0.8508, correlation about mean = 0.4534, overlap = 958.5  
steps = 68, shift = 8.08, angle = 0.0195 degrees  
  
Position of cryosparc_P29_J191_map_half_A.mrc (#2) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98618599 -0.16204079 -0.03435088 11.18605486  
0.16521886 0.94747364 0.27385476 -98.55076263  
-0.01182908 -0.27574715 0.96115742 34.77020621  
Axis -0.85868132 -0.03518738 0.51130053  
Axis point 0.00000000 52.60789889 368.45977548  
Rotation angle (degrees) 18.66453997  
Shift along axis 11.64051136  
  

> view matrix models
> #1,0.96232,0.26541,-0.059103,-18.014,-0.27162,0.92823,-0.2542,65.029,-0.012606,0.26067,0.96534,-38.048

> undo

> view matrix models
> #1,0.96232,0.26541,-0.059103,-43.385,-0.27162,0.92823,-0.2542,87.538,-0.012606,0.26067,0.96534,-27.906

> undo

> view matrix models
> #1,0.96232,0.26541,-0.059103,-22.854,-0.27162,0.92823,-0.2542,68.03,-0.012606,0.26067,0.96534,-24.055

> undo

> view matrix models
> #2,0.99358,0.11183,-0.01718,39.942,-0.1115,0.99358,0.019206,-38.861,0.019217,-0.017167,0.99967,47.606

> view matrix models
> #1,0.96232,0.26541,-0.059103,-36.694,-0.27162,0.92823,-0.2542,88.06,-0.012606,0.26067,0.96534,-20.127

> undo

> view matrix models
> #2,0.99358,0.11183,-0.01718,43.756,-0.1115,0.99358,0.019206,-51.724,0.019217,-0.017167,0.99967,6.0329

> view matrix models
> #2,0.99358,0.11183,-0.01718,-48.718,-0.1115,0.99358,0.019206,12.675,0.019217,-0.017167,0.99967,-11.966

> fitmap #2 inMap #1

Fit map cryosparc_P29_J191_map_half_A.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 7023 points  
correlation = 0.8508, correlation about mean = 0.4533, overlap = 958.5  
steps = 144, shift = 29.6, angle = 0.0144 degrees  
  
Position of cryosparc_P29_J191_map_half_A.mrc (#2) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.98617070 -0.16217710 -0.03414582 11.17203844  
0.16529273 0.94744735 0.27390113 -98.56665025  
-0.01206912 -0.27575732 0.96115151 34.81580914  
Axis -0.85858115 -0.03448440 0.51151660  
Axis point 0.00000000 52.79052650 368.52849030  
Rotation angle (degrees) 18.66878937  
Shift along axis 11.61577418  
  

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> view matrix models
> #2,0.9936,0.11169,-0.01697,-28.725,-0.11136,0.99359,0.019195,30.835,0.019005,-0.017182,0.99967,85.202

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.98916,0.14683,-0.0016932,-36.536,-0.14683,0.98916,-0.0025017,41.202,0.0013076,0.0027232,1,84.73

> view matrix models
> #2,-0.24234,0.92231,0.30102,-12.666,-0.42793,-0.38007,0.82001,183.18,0.87072,0.069902,0.48679,13.605

> view matrix models
> #2,-0.24112,0.92234,0.30192,-13.027,-0.42337,-0.37991,0.82245,181.98,0.87328,0.070483,0.48209,13.866

> ui mousemode right "move picked models"

> view matrix models
> #2,-0.24112,0.92234,0.30192,12.764,-0.42337,-0.37991,0.82245,252.47,0.87328,0.070483,0.48209,-118

> view matrix models
> #2,-0.24112,0.92234,0.30192,10.28,-0.42337,-0.37991,0.82245,244.97,0.87328,0.070483,0.48209,-110.37

> view matrix models
> #1,0.96232,0.26541,-0.059103,-36.495,-0.27162,0.92823,-0.2542,90.449,-0.012606,0.26067,0.96534,-3.3221

> undo

> view matrix models
> #1,0.96232,0.26541,-0.059103,-47.833,-0.27162,0.92823,-0.2542,94.112,-0.012606,0.26067,0.96534,-25.919

> undo

> view matrix models
> #2,-0.24112,0.92234,0.30192,-175.61,-0.42337,-0.37991,0.82245,75.871,0.87328,0.070483,0.48209,-51.172

> open "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J128_class_00_final_volume.mrc"
> "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J128_class_01_final_volume.mrc"

Opened cryosparc_P29_J128_class_00_final_volume.mrc as #5.1, grid size
128,128,128, pixel 2.6, shown at level 0.149, step 1, values float32  
Opened cryosparc_P29_J128_class_01_final_volume.mrc as #5.2, grid size
128,128,128, pixel 2.6, shown at level 0.158, step 1, values float32  

> hide #!5.2 models

> select #5.1

2 models selected  

> view matrix models #5.1,1,0,0,45.598,0,1,0,49.695,0,0,1,52.736

> volume #5.2 level 0.2203

> volume #5.1 level 0.4334

> hide #!5.1 models

> select subtract #5.1

Nothing selected  

> select #5.2

2 models selected  

> view matrix models #5.2,1,0,0,43.825,0,1,0,48.132,0,0,1,53.709

> view matrix models #5.2,1,0,0,-136.7,0,1,0,-115.92,0,0,1,112.52

> hide #!2 models

> view matrix models #5.2,1,0,0,-176.11,0,1,0,-162.43,0,0,1,37.886

> show #!3 models

> view matrix models #5.2,1,0,0,-186.09,0,1,0,-175.03,0,0,1,21.069

> ui mousemode right "rotate selected models"

> view matrix models
> #5.2,0.18464,-0.20808,-0.96053,144.47,-0.76742,-0.64109,-0.0086385,215.58,-0.61399,0.73872,-0.27806,220.74

> view matrix models
> #5.2,0.25266,-0.44969,-0.8567,154.75,-0.92251,-0.37898,-0.073143,209.17,-0.29178,0.8088,-0.5106,197.78

> view matrix models
> #5.2,0.39232,-0.066618,-0.91741,80.748,-0.86625,-0.3622,-0.34414,244.21,-0.30936,0.92972,-0.19981,127.35

> ui mousemode right "move picked models"

> view matrix models
> #5.2,0.39232,-0.066618,-0.91741,40.991,-0.86625,-0.3622,-0.34414,327.81,-0.30936,0.92972,-0.19981,79.542

> view matrix models
> #5.2,0.39232,-0.066618,-0.91741,175,-0.86625,-0.3622,-0.34414,331.52,-0.30936,0.92972,-0.19981,123.59

> view matrix models
> #5.2,0.39232,-0.066618,-0.91741,186.13,-0.86625,-0.3622,-0.34414,388.79,-0.30936,0.92972,-0.19981,65

> view matrix models
> #5.2,0.39232,-0.066618,-0.91741,200.32,-0.86625,-0.3622,-0.34414,391.39,-0.30936,0.92972,-0.19981,68.286

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 2 maps.  

> hide #!3 models

> hide #!5.2 models

> show #!5.2 models

> hide #!5 models

> show #!5 models

> select add #5

5 models selected  

> select subtract #5

Nothing selected  

> hide #!5 models

> show #!5 models

> hide #!5.2 models

> show #!5.2 models

> fitmap #1 inMap #5.2

Fit map cryosparc_P29_J282_map_sharp.mrc in map
cryosparc_P29_J128_class_01_final_volume.mrc using 200124 points  
correlation = 0.662, correlation about mean = 0.215, overlap = 1.543e+04  
steps = 176, shift = 6.78, angle = 33.9 degrees  
  
Position of cryosparc_P29_J282_map_sharp.mrc (#1) relative to
cryosparc_P29_J128_class_01_final_volume.mrc (#5.2) coordinates:  
Matrix rotation and translation  
0.90972671 -0.41392676 -0.03258772 104.98962629  
-0.14791692 -0.39642477 0.90607284 111.58600968  
-0.38796637 -0.81945838 -0.42186497 367.08777410  
Axis -0.96846572 0.19945860 0.14929977  
Axis point 0.00000000 183.86238764 154.79342874  
Rotation angle (degrees) 117.01871544  
Shift along axis -24.61594552  
  

> show #!3 models

> volume #5.2 level 0.1402

> hide #!3 models

> open "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J128_class_04_final_volume.mrc"

Opened cryosparc_P29_J128_class_04_final_volume.mrc as #6, grid size
128,128,128, pixel 2.6, shown at level 0.143, step 1, values float32  

> hide #!5.2 models

> view matrix models #6,1,0,0,83.811,0,1,0,47.691,0,0,1,-95.115

> volume #6 level 0.1041

> hide #!1 models

> surface dust #6 size 26

> volume #6 level 0.1235

[Repeated 1 time(s)]

> show #!1 models

> show #!3 models

> hide #!6 models

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 204  
shifted from previous position = 2.82  
rotated from previous position = 33.9 degrees  
atoms outside contour = 6515, contour level = 0.19115  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91536136 0.39238661 -0.09025703 210.22406097  
-0.25241221 -0.38459164 0.88790616 94.34617249  
0.31369039 0.83553696 0.45108349 -88.66209857  
Axis -0.06866466 -0.52964172 -0.84543764  
Axis point 120.42418134 50.22368139 0.00000000  
Rotation angle (degrees) 157.58327398  
Shift along axis 10.55364335  
  

> show #!6 models

> select #6

2 models selected  

> view matrix models #6,1,0,0,96.334,0,1,0,10.41,0,0,1,-24.875

> ui mousemode right "rotate selected models"

> view matrix models
> #6,0.47227,0.088481,-0.877,319.46,-0.58067,0.77978,-0.23402,184.53,0.66317,0.61977,0.41964,-140.94

> view matrix models
> #6,-0.098722,0.16537,-0.98128,421.29,-0.79481,-0.60646,-0.022241,412.44,-0.59878,0.77773,0.19131,85.708

> volume #6 level 0.2978

> volume #6 level 0.1525

> view matrix models
> #6,-0.17802,0.15186,-0.97224,435.51,-0.83808,-0.54117,0.068926,393.34,-0.51568,0.82709,0.22361,57.798

> ui mousemode right "move picked models"

> view matrix models
> #6,-0.17802,0.15186,-0.97224,293.15,-0.83808,-0.54117,0.068926,400.88,-0.51568,0.82709,0.22361,57.48

> hide #!3 models

> view matrix models
> #6,-0.17802,0.15186,-0.97224,300.35,-0.83808,-0.54117,0.068926,357.47,-0.51568,0.82709,0.22361,46.611

> fitmap #6 inMap #1

Fit map cryosparc_P29_J128_class_04_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 19375 points  
correlation = 0.6526, correlation about mean = 0.1007, overlap = 2296  
steps = 204, shift = 13.9, angle = 33.5 degrees  
  
Position of cryosparc_P29_J128_class_04_final_volume.mrc (#6) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.06331371 0.11368845 -0.99149701 270.02086238  
-0.97234773 -0.21675013 -0.08694421 352.38788229  
-0.22479165 0.96958462 0.09682145 -9.22209687  
Axis 0.62218064 -0.45150611 -0.63955726  
Axis point 286.47669701 66.17031525 0.00000000  
Rotation angle (degrees) 121.89116928  
Shift along axis 14.79452828  
  

> view matrix models
> #6,-0.62357,0.25302,-0.73969,260.57,-0.76573,-0.38835,0.51268,273.23,-0.15754,0.8861,0.4359,-30.852

> ui mousemode right "rotate selected models"

> view matrix models
> #6,0.43156,0.40016,0.80847,-204.59,-0.55089,-0.59279,0.58747,258.79,0.71434,-0.69891,-0.035389,169.26

> view matrix models
> #6,0.15423,0.50687,0.84811,-182.3,-0.47285,-0.71583,0.51381,278.83,0.86754,-0.48028,0.12927,78.452

> ui mousemode right "move picked models"

> view matrix models
> #6,0.15423,0.50687,0.84811,-130.53,-0.47285,-0.71583,0.51381,256.06,0.86754,-0.48028,0.12927,46.071

> fitmap #6 inMap #1

Fit map cryosparc_P29_J128_class_04_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 19375 points  
correlation = 0.6599, correlation about mean = 0.2408, overlap = 2440  
steps = 344, shift = 26, angle = 37.5 degrees  
  
Position of cryosparc_P29_J128_class_04_final_volume.mrc (#6) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49716905 0.85429937 0.15164280 -98.96559477  
-0.63557644 0.23960689 0.73391494 100.69671049  
0.59064841 -0.46126038 0.66209767 4.53593078  
Axis -0.60983890 -0.22400287 -0.76020999  
Axis point 35.95880431 112.48957098 0.00000000  
Rotation angle (degrees) 78.49597334  
Shift along axis 34.34845794  
  

> show #!4 models

> hide #!4 models

> show #!3 models

> ui mousemode right "rotate selected models"

> view matrix models
> #6,0.19261,0.42422,-0.88484,194.85,-0.54903,0.79396,0.26114,56.64,0.81331,0.4355,0.38583,-146.33

> ui mousemode right "move picked models"

> view matrix models
> #6,0.19261,0.42422,-0.88484,148.32,-0.54903,0.79396,0.26114,46.195,0.81331,0.4355,0.38583,-144.19

> hide #!3 models

> fitmap #6 inMap #1

Fit map cryosparc_P29_J128_class_04_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 19375 points  
correlation = 0.6685, correlation about mean = 0.1245, overlap = 2278  
steps = 252, shift = 22.1, angle = 27.4 degrees  
  
Position of cryosparc_P29_J128_class_04_final_volume.mrc (#6) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40828955 -0.02293566 -0.91256430 221.85750796  
-0.64782010 0.69703614 -0.30735933 184.56938452  
0.64313978 0.71666910 0.26973438 -143.74911630  
Axis 0.52126199 -0.79190126 -0.31808541  
Axis point 277.71067017 0.00000000 54.35779911  
Rotation angle (degrees) 79.19132538  
Shift along axis 15.20965414  
  

> show #!3 models

> volume #6 level 0.1332

> view matrix models
> #6,0.098007,0.6376,-0.7641,109.03,-0.85289,0.44945,0.26565,171.58,0.51281,0.62566,0.58786,-146.25

> view matrix models
> #6,0.098007,0.6376,-0.7641,114.61,-0.85289,0.44945,0.26565,164.09,0.51281,0.62566,0.58786,-126.38

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 2 maps.  

> hide #!3 models

> fitmap #6 inMap #1

Fit map cryosparc_P29_J128_class_04_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 22760 points  
correlation = 0.6647, correlation about mean = 0.1837, overlap = 2650  
steps = 348, shift = 13.5, angle = 54.9 degrees  
  
Position of cryosparc_P29_J128_class_04_final_volume.mrc (#6) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.28984289 0.78430132 -0.54850939 35.66876430  
-0.94537887 0.32393910 -0.03636308 235.10797961  
0.14916403 0.52908876 0.83535333 -105.74339903  
Axis 0.29013644 -0.35798005 -0.88750838  
Axis point 172.07741062 117.74241788 0.00000000  
Rotation angle (degrees) 77.02254376  
Shift along axis 20.03299407  
  

> show #!3 models

> select subtract #6

Nothing selected  

> select #6

2 models selected  

> select subtract #6

Nothing selected  

> ui mousemode right "rotate selected models"

> select #6

2 models selected  

> view matrix models
> #6,-0.64113,-0.76621,-0.043361,344.49,-0.74983,0.63746,-0.1772,188.01,0.16342,-0.081097,-0.98322,304.76

> view matrix models
> #6,-0.62043,-0.78274,-0.048783,344.57,-0.76664,0.61842,-0.17268,193.18,0.16533,-0.069738,-0.98377,302.68

> ui mousemode right "move picked models"

> view matrix models
> #6,-0.62043,-0.78274,-0.048783,345.79,-0.76664,0.61842,-0.17268,190.75,0.16533,-0.069738,-0.98377,287.65

> view matrix models
> #6,-0.62043,-0.78274,-0.048783,351.4,-0.76664,0.61842,-0.17268,186.79,0.16533,-0.069738,-0.98377,280.69

> hide #!3 models

> fitmap #6 inMap #1

Fit map cryosparc_P29_J128_class_04_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 22760 points  
correlation = 0.7755, correlation about mean = 0.4415, overlap = 3276  
steps = 216, shift = 22.7, angle = 25.2 degrees  
  
Position of cryosparc_P29_J128_class_04_final_volume.mrc (#6) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.25176027 -0.96400257 0.08553248 324.11157995  
-0.91282425 0.20717189 -0.35189728 307.44931995  
0.32150995 -0.16666988 -0.93212258 278.62861531  
Axis 0.60864972 -0.77541241 0.16816989  
Axis point 269.01827912 0.00000000 188.47536227  
Rotation angle (degrees) 171.24772930  
Shift along axis 5.72734665  
  

> view matrix models
> #6,-0.64314,-0.62141,-0.44746,409.4,-0.61426,0.76757,-0.18308,137.47,0.45723,0.15711,-0.87536,175.9

> view matrix models
> #6,-0.64314,-0.62141,-0.44746,403.02,-0.61426,0.76757,-0.18308,141.23,0.45723,0.15711,-0.87536,180.84

> view matrix models
> #6,-0.64314,-0.62141,-0.44746,403.72,-0.61426,0.76757,-0.18308,139.32,0.45723,0.15711,-0.87536,180.8

> view matrix models
> #6,-0.64314,-0.62141,-0.44746,399.36,-0.61426,0.76757,-0.18308,134.16,0.45723,0.15711,-0.87536,183.06

> volume #6 level 0.1429

> show #!3 models

> volume #6 level 0.1267

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 2 maps.  

> hide #!3 models

> open "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J200_class_03_final_volume.mrc"

Opened cryosparc_P29_J200_class_03_final_volume.mrc as #7, grid size
128,128,128, pixel 2.6, shown at level 0.208, step 1, values float32  

> hide #!6 models

> select #7

2 models selected  

> view matrix models #7,1,0,0,-24.48,0,1,0,11.189,0,0,1,52.907

> hide #!1 models

> surface dust #7 size 26

> show #!1 models

> view matrix models #7,1,0,0,-94.691,0,1,0,-126.64,0,0,1,-70.461

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.82133,-0.35454,-0.4469,68.405,-0.13464,0.6408,-0.75581,81.715,0.55434,0.68094,0.47857,-187.41

> view matrix models
> #7,0.69177,-0.3524,-0.63029,120.42,-0.44,0.48639,-0.75487,157.86,0.57258,0.79952,0.18142,-160.1

> ui mousemode right "move picked models"

> view matrix models
> #7,0.69177,-0.3524,-0.63029,174.74,-0.44,0.48639,-0.75487,257.08,0.57258,0.79952,0.18142,-146.27

> view matrix models
> #7,0.69177,-0.3524,-0.63029,169.93,-0.44,0.48639,-0.75487,263.52,0.57258,0.79952,0.18142,-132.16

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 20958 points  
correlation = 0.722, correlation about mean = 0.161, overlap = 3126  
steps = 168, shift = 4.34, angle = 12.2 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.39334170 -0.91732977 -0.06155004 228.96988312  
0.11274889 0.11457002 -0.98699615 265.86688742  
0.91245274 0.38128705 0.14849308 -115.11173437  
Axis 0.69446674 -0.49435127 0.52281236  
Axis point 0.00000000 273.78746878 7.42724353  
Rotation angle (degrees) 99.89235177  
Shift along axis -32.60150110  
  

> show #!3 models

> hide #!1 models

> volume #7 level 0.1483

> hide #!7 models

> show #!4 models

> hide #!4 models

> show #!1 models

> hide #!3 models

> show #!7 models

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 29433 points  
correlation = 0.6962, correlation about mean = 0.2066, overlap = 3461  
steps = 104, shift = 0.789, angle = 0.645 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40131268 -0.91373642 -0.06351291 227.42417666  
0.10525826 0.11488941 -0.98778597 266.69821791  
0.90987298 0.38972578 0.14228488 -114.48197660  
Axis 0.69902224 -0.49394742 0.51709173  
Axis point 0.00000000 272.66968865 9.68813601  
Rotation angle (degrees) 99.83180721  
Shift along axis -31.95802394  
  

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 29433 points  
correlation = 0.6962, correlation about mean = 0.2067, overlap = 3461  
steps = 104, shift = 0.0176, angle = 0.0185 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.40138847 -0.91371726 -0.06330926 227.36710163  
0.10511868 0.11462225 -0.98783187 266.78965917  
0.90985568 0.38984934 0.14205680 -114.46384655  
Axis 0.69913403 -0.49385353 0.51703026  
Axis point 0.00000000 272.62958013 9.73640590  
Rotation angle (degrees) 99.84400276  
Shift along axis -31.97620892  
  

> select #7

2 models selected  

> view matrix models
> #7,0.64039,-0.46738,-0.60947,194.11,-0.2996,0.57865,-0.75855,216.01,0.7072,0.66837,0.23054,-136.78

> view matrix models
> #7,0.64039,-0.46738,-0.60947,202.74,-0.2996,0.57865,-0.75855,198.6,0.7072,0.66837,0.23054,-131.4

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 29433 points  
correlation = 0.6893, correlation about mean = 0.2188, overlap = 3622  
steps = 300, shift = 24.2, angle = 37.2 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83632920 -0.52408029 -0.16091404 102.73163445  
-0.15609437 0.05373214 -0.98627958 307.34573480  
0.52553594 0.84997219 -0.03686823 -85.93527085  
Axis 0.92060938 -0.34415340 0.18449065  
Axis point 0.00000000 213.72061734 97.13121048  
Rotation angle (degrees) 94.20949360  
Shift along axis -27.05262807  
  

> view matrix models
> #7,0.67323,-0.078869,-0.73521,129.07,-0.70633,0.22554,-0.67099,333.68,0.21874,0.97104,0.096131,-85.083

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 29433 points  
correlation = 0.6893, correlation about mean = 0.2188, overlap = 3622  
steps = 112, shift = 15, angle = 0.00449 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.83632623 -0.52409913 -0.16086808 102.73898132  
-0.15602422 0.05375948 -0.98628919 307.31660127  
0.52556149 0.84995884 -0.03681170 -85.95941540  
Axis 0.92060476 -0.34414214 0.18453472  
Axis point 0.00000000 213.72141489 97.11021830  
Rotation angle (degrees) 94.20716954  
Shift along axis -27.04109463  
  

> show #!3 models

> volume #1 level 0.3068

> volume #1 level 0.1994

> view matrix models
> #7,0.67328,-0.07887,-0.73517,129.39,-0.70628,0.22557,-0.67103,347.47,0.21876,0.97103,0.096169,44.567

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.77044,-0.32542,-0.5482,124.88,-0.62108,-0.57712,-0.53028,449.61,-0.14382,0.74902,-0.64675,268.04

> ui mousemode right "move picked models"

> view matrix models
> #7,0.77044,-0.32542,-0.5482,101.34,-0.62108,-0.57712,-0.53028,379.87,-0.14382,0.74902,-0.64675,201.36

> view matrix models
> #7,0.77044,-0.32542,-0.5482,120.11,-0.62108,-0.57712,-0.53028,425.23,-0.14382,0.74902,-0.64675,137.61

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 2 maps.  

> hide #!3 models

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 29433 points  
correlation = 0.7378, correlation about mean = 0.3343, overlap = 4044  
steps = 192, shift = 22.3, angle = 17.4 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.97460207 -0.21297694 0.06922167 -6.89184819  
-0.15283628 -0.85849539 -0.48951686 383.50754937  
0.16368228 0.46650456 -0.86924198 183.62643180  
Axis 0.99320982 -0.09813505 0.06248009  
Axis point 0.00000000 167.43893905 141.12660667  
Rotation angle (degrees) 151.23105244  
Shift along axis -33.00759005  
  

> view matrix models
> #7,0.66159,-0.53615,-0.52425,133.57,-0.73087,-0.6174,-0.29093,322.45,-0.16769,0.57564,-0.80032,282.63

> view matrix models
> #7,0.66159,-0.53615,-0.52425,138.38,-0.73087,-0.6174,-0.29093,329.21,-0.16769,0.57564,-0.80032,283.47

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.81325,0.38503,-0.43632,-61.925,-0.56607,0.69724,-0.4398,98.027,0.13489,0.60465,0.78498,-38.278

> view matrix models
> #7,0.5864,0.78071,0.21596,-203.3,-0.80515,0.59098,0.049816,73.519,-0.088734,-0.20309,0.97513,107.31

> volume #7 level 0.2534

> view matrix models
> #7,-0.2387,0.10803,0.96507,-78.962,0.48415,-0.84823,0.2147,65.545,0.84179,0.51849,0.15017,-30.137

> volume #1 level 0.6456

> volume #4 level 0.7242

> hide #!4 models

> volume #7 level 0.6681

> select #7

2 models selected  

> view matrix models
> #7,-0.22431,0.14575,0.96356,-86.99,0.50956,-0.82527,0.24346,52.944,0.83068,0.54561,0.11085,-25.97

> ui mousemode right "move picked models"

> view matrix models
> #7,-0.22431,0.14575,0.96356,-63.143,0.50956,-0.82527,0.24346,72.849,0.83068,0.54561,0.11085,-15.77

> ui mousemode right "rotate selected models"

> view matrix models
> #7,-0.2587,0.059849,0.9641,-44.109,0.45132,-0.87495,0.17542,101.63,0.85404,0.48049,0.19934,-24.235

> view matrix models
> #7,-0.16822,0.33569,0.92683,-95.998,0.63369,-0.68338,0.36253,10.224,0.75508,0.64831,-0.097758,15.529

> view matrix models
> #7,-0.23297,0.87574,0.42285,-85.556,0.93401,0.080409,0.34807,-156.53,0.27082,0.47604,-0.83669,246.06

> view matrix models
> #7,-0.26188,0.052561,0.96367,-42.369,0.44631,-0.87873,0.16922,104.08,0.8557,0.47441,0.20667,-24.783

> view matrix models
> #7,-0.23362,0.12102,0.96477,-57.938,0.49294,-0.84052,0.2248,81.103,0.83811,0.52809,0.13671,-18.58

> volume #7 level 0.5179

> view matrix models
> #7,-0.15689,0.39208,0.90645,-103.83,0.66929,-0.63271,0.38951,-8.918,0.72625,0.66779,-0.16315,28.414

> view matrix models
> #7,-0.14316,0.49381,0.8577,-114.02,0.73195,-0.53049,0.4276,-41.957,0.66615,0.68901,-0.2855,55.664

> view matrix models
> #7,-0.26907,0.90097,0.34037,-70.432,0.94029,0.16925,0.29532,-165.21,0.20847,0.39951,-0.89271,279.99

> view matrix models
> #7,-0.27261,0.90273,0.33281,-68.849,0.94049,0.17708,0.29005,-165.6,0.2029,0.39207,-0.89728,282.86

> view matrix models
> #7,0.97247,-0.20946,-0.10211,-26.34,-0.080502,-0.71319,0.69633,76.823,-0.21868,-0.66894,-0.71042,489.64

> view matrix models
> #7,0.98993,-0.073583,-0.12091,-47.612,0.005499,-0.8336,0.55234,105.87,-0.14143,-0.54745,-0.8248,476.81

> ui mousemode right "move picked models"

> view matrix models
> #7,0.98993,-0.073583,-0.12091,-105,0.005499,-0.8336,0.55234,192.77,-0.14143,-0.54745,-0.8248,278.6

> volume #1 level 0.7365

> view matrix models
> #7,0.98993,-0.073583,-0.12091,-100.13,0.005499,-0.8336,0.55234,197.11,-0.14143,-0.54745,-0.8248,280.32

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.9946,0.1035,-0.0074137,-148.1,0.062744,-0.54299,0.83739,93.493,0.08264,-0.83333,-0.54656,241.48

> select #1

2 models selected  

> volume #1 level 0.6539

> view matrix models
> #1,0.84506,0.49238,0.20838,-86.682,-0.49147,0.86883,-0.05985,93.373,-0.21052,-0.051838,0.97621,39.364

> view matrix models
> #1,-0.61748,-0.072583,0.78323,111.09,0.72971,-0.42463,0.53593,29.665,0.29368,0.90245,0.31516,-72.457

> volume #4 level 0.6779

> hide #!4 models

> volume #7 level 0.4337

> volume #1 level 0.5382

> view matrix models
> #1,-0.72404,-0.22346,0.65256,165.11,0.68803,-0.301,0.66031,0.647,0.048873,0.92707,0.37168,-50.28

> select #7

2 models selected  

> view matrix models
> #7,0.78499,0.61244,-0.093248,-179.41,-0.43132,0.43227,-0.7919,295.61,-0.44468,0.66186,0.60349,-101.43

> volume #1 level 0.3399

> view matrix models
> #7,0.89639,0.29414,-0.33162,-107.35,-0.42232,0.79397,-0.43733,177.06,0.13466,0.53207,0.83593,-216.45

> select #7

2 models selected  

> view matrix models
> #7,0.41817,-0.1224,-0.90009,134.02,0.56679,0.80949,0.15324,-89.522,0.70985,-0.57424,0.40788,-64.758

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models
> #7,0.41817,-0.1224,-0.90009,198.23,0.56679,0.80949,0.15324,-214.55,0.70985,-0.57424,0.40788,-100.6

> volume #1 level 0.6456

> view matrix models
> #7,0.41817,-0.1224,-0.90009,187.92,0.56679,0.80949,0.15324,-234.87,0.70985,-0.57424,0.40788,-64.948

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.65562,0.46844,0.59223,-196.62,-0.57678,-0.19551,0.79316,6.9726,0.48733,-0.86159,0.14201,62.419

> volume #1 level 0.187

> show #!3 models

> hide #!7 models

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3172, steps = 260  
shifted from previous position = 17.6  
rotated from previous position = 27 degrees  
atoms outside contour = 9359, contour level = 0.18702  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
0.42052385 -0.89872487 0.12431130 179.88105835  
0.86946122 0.43834078 0.22780376 -77.93947291  
-0.25922362 0.01228694 0.96573917 29.69563463  
Axis -0.11827971 0.21049123 0.97041401  
Axis point 152.51240408 100.64841285 0.00000000  
Rotation angle (degrees) 65.65048129  
Shift along axis -8.86479526  
  

> ui mousemode right "move picked models"

> select /B:119@N

1 atom, 1 residue, 1 model selected  

> view matrix models
> #3,-0.66792,0.56078,0.4893,71.272,-0.14355,-0.74218,0.65465,167.35,0.73026,0.36702,0.57621,-100.89

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.60751,-0.79065,-0.076121,170.13,-0.13554,-0.0087576,-0.99073,281.21,0.78266,0.6122,-0.11248,-51.047

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3279, steps = 276  
shifted from previous position = 23.5  
rotated from previous position = 37.4 degrees  
atoms outside contour = 9415, contour level = 0.18702  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.44399312 0.83334110 -0.32926082 128.49182330  
0.42443137 0.51922301 0.74179878 -99.65996012  
0.78913122 0.18960493 -0.58422756 79.19127961  
Axis -0.42068619 -0.85204152 -0.31152588  
Axis point 71.04216934 0.00000000 86.59177700  
Rotation angle (degrees) 138.98159872  
Shift along axis 6.18955543  
  

> view matrix models
> #3,-0.88744,0.032474,0.45978,178.34,-0.14227,-0.96811,-0.20622,345.08,0.43842,-0.24842,0.86376,-4.3053

> view matrix models
> #3,-0.70056,0.091905,-0.70765,302.42,0.4993,-0.64536,-0.57812,256.15,-0.50982,-0.75833,0.40623,269.97

> ui mousemode right "move picked models"

> view matrix models
> #3,-0.70056,0.091905,-0.70765,299.58,0.4993,-0.64536,-0.57812,275.37,-0.50982,-0.75833,0.40623,105.11

> view matrix models
> #3,-0.70056,0.091905,-0.70765,328.53,0.4993,-0.64536,-0.57812,290.36,-0.50982,-0.75833,0.40623,81.947

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.49036,0.17211,-0.85436,166.96,-0.79436,-0.31501,-0.51938,416.86,-0.35852,0.93335,-0.017747,-135.89

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.45468,-0.35214,0.81809,21.915,-0.44846,0.70308,0.55187,68.657,-0.76952,-0.6178,0.16175,131.18

> view matrix models
> #3,0.98906,-0.092272,0.11508,2.7175,0.036193,0.90814,0.41709,-13.229,-0.143,-0.40836,0.90155,-90.492

> ui mousemode right "move picked models"

> view matrix models
> #3,0.98906,-0.092272,0.11508,-4.4103,0.036193,0.90814,0.41709,-48.441,-0.143,-0.40836,0.90155,72.448

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 224  
shifted from previous position = 8  
rotated from previous position = 34.4 degrees  
atoms outside contour = 6388, contour level = 0.18702  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91533618 0.39246416 -0.09017485 210.19373810  
-0.25238788 -0.38463099 0.88789599 94.36089426  
0.31378332 0.83548237 0.45111988 -88.68135331  
Axis -0.06871806 -0.52961849 -0.84544786  
Axis point 120.41515822 50.23740188 0.00000000  
Rotation angle (degrees) 157.58160833  
Shift along axis 10.55608006  
  

> select add #3

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 4 models selected  

> select subtract #3

7 models selected  

> view matrix models
> #3,0.9239,0.347,0.16127,-97.377,-0.34661,0.93748,-0.031424,7.0289,-0.16209,-0.026865,0.98641,44.387

> undo

> select add #3

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 3 models selected  

> select add #5

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 15 models selected  

> select subtract #5.1

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 13 models selected  

> select subtract #5.2

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 11 models selected  

> select add #1

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 13 models selected  

> view matrix models
> #3,0.9239,0.347,0.16127,-122.87,-0.34661,0.93748,-0.031424,-66.006,-0.16209,-0.026865,0.98641,62.597

> view matrix models
> #1,-0.72404,-0.22346,0.65256,110.54,0.68803,-0.301,0.66031,-122.06,0.048873,0.92707,0.37168,-4.7652

> fitmap #3 inMap #1

Fit molecule 7xl4 (#3) to map cryosparc_P29_J282_map_sharp.mrc (#1) using
24560 atoms  
average map value = 0.3914, steps = 76  
shifted from previous position = 3.78  
rotated from previous position = 0.0101 degrees  
atoms outside contour = 6395, contour level = 0.18702  
  
Position of 7xl4 (#3) relative to cryosparc_P29_J282_map_sharp.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.91538042 0.39233543 -0.09028587 210.22624339  
-0.25242569 -0.38462444 0.88788808 94.38018848  
0.31362380 0.83554585 0.45111324 -88.66253739  
Axis -0.06863414 -0.52962953 -0.84544776  
Axis point 120.42600657 50.24189104 0.00000000  
Rotation angle (degrees) 157.58493813  
Shift along axis 10.54431221  
  

> show #!7 models

> view matrix models
> #7,0.65562,0.46844,0.59223,-339.55,-0.57678,-0.19551,0.79316,1.4963,0.48733,-0.86159,0.14201,27.316

> volume #7 level 0.2955

> hide #!1 models

> volume #!7 style mesh

> hide #!3 models

> show #!3 models

> volume #!7 style mesh

> select add #5

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 17 models selected  

> select subtract #5

24560 atoms, 24867 bonds, 12 pseudobonds, 3482 residues, 12 models selected  

> show #!1 models

> volume sel style surface

> select #7

2 models selected  

> volume sel style surface

> hide #!1 models

> show #!1 models

> view matrix models
> #7,0.65562,0.46844,0.59223,-293.66,-0.57678,-0.19551,0.79316,23.703,0.48733,-0.86159,0.14201,-9.2491

> ui mousemode right "rotate selected models"

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #7,-0.021175,0.86878,-0.49474,-63.466,0.94704,0.17603,0.26858,-205.8,0.32042,-0.46285,-0.8265,115.59

> view matrix models
> #7,-0.61563,0.69825,-0.36531,42.876,0.65496,0.71115,0.25552,-242.44,0.4382,-0.081956,-0.89513,44.666

> ui mousemode right "move picked models"

> view matrix models
> #7,-0.61563,0.69825,-0.36531,132.91,0.65496,0.71115,0.25552,-317.11,0.4382,-0.081956,-0.89513,204.23

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #7,-0.089615,-0.39543,0.91412,9.7878,0.064701,0.91356,0.40153,-275.55,-0.99387,0.095127,-0.056284,275.46

> view matrix models
> #7,-0.97828,0.17102,0.11717,199.72,0.20726,0.81799,0.53659,-306.45,-0.0040745,0.54921,-0.83567,164.92

> view matrix models
> #7,-0.57755,0.81097,-0.093633,62.45,0.7546,0.5741,0.31779,-321.78,0.31147,0.11289,-0.94353,201.63

> view matrix models
> #7,-0.58208,0.2722,0.76622,7.6776,0.81288,0.2184,0.53994,-310.34,-0.020368,0.93713,-0.34839,22.245

> view matrix models
> #7,-0.1592,0.27677,0.94766,-94.616,0.97694,0.18251,0.11081,-260.13,-0.14229,0.94344,-0.29945,33.515

> ui mousemode right "move picked models"

> view matrix models
> #7,-0.1592,0.27677,0.94766,-124.34,0.97694,0.18251,0.11081,-248.85,-0.14229,0.94344,-0.29945,34.726

> view matrix models
> #7,-0.1592,0.27677,0.94766,-94.232,0.97694,0.18251,0.11081,-208.27,-0.14229,0.94344,-0.29945,82.898

> hide #!3 models

> hide #!5 models

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 13808 points  
correlation = 0.8132, correlation about mean = 0.26, overlap = 3044  
steps = 216, shift = 27.7, angle = 39.5 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.94513976 -0.32268640 -0.05083522 40.62486734  
0.21243936 0.72537688 -0.65475019 91.96386376  
0.24815368 0.60803106 0.75413387 -128.07551904  
Axis 0.89960981 -0.21300075 0.38122548  
Axis point 0.00000000 207.98750828 42.85281527  
Rotation angle (degrees) 44.57557558  
Shift along axis -31.86749394  
  

> volume #7 level 0.1272

> volume #7 level 0.1933

> show #!3 models

> volume #1 level 0.3895

> volume #1 level 0.3399

> hide #!3 models

> fitmap #7 inMap #1

Fit map cryosparc_P29_J200_class_03_final_volume.mrc in map
cryosparc_P29_J282_map_sharp.mrc using 22660 points  
correlation = 0.7751, correlation about mean = 0.2871, overlap = 3638  
steps = 72, shift = 1.41, angle = 2.78 degrees  
  
Position of cryosparc_P29_J200_class_03_final_volume.mrc (#7) relative to
cryosparc_P29_J282_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.95780934 -0.28364188 -0.04635148 31.81273954  
0.19125134 0.74940902 -0.63388402 86.94063607  
0.21453228 0.59827527 0.77203789 -123.13200832  
Axis 0.91540162 -0.19381700 0.35280992  
Axis point 0.00000000 205.15554451 46.52109270  
Rotation angle (degrees) 42.30024859  
Shift along axis -31.17133393  
  

> show #!3 models

> view matrix models
> #7,-0.59623,0.42832,0.67901,-58.757,0.74309,-0.025681,0.6687,-121.65,0.30385,0.90326,-0.30297,88.368

> view matrix models
> #7,-0.59623,0.42832,0.67901,-34.906,0.74309,-0.025681,0.6687,-98.817,0.30385,0.90326,-0.30297,80.571

> ui mousemode right "rotate selected models"

> view matrix models
> #7,0.98698,-0.11816,0.10915,-107.73,0.14249,0.32731,-0.93411,209.56,0.074652,0.9375,0.33989,4.6256

> view matrix models
> #7,0.94769,-0.31311,0.061935,-59.394,0.15905,0.29503,-0.94216,213.76,0.27673,0.90273,0.3294,-21.218

> hide #!3 models

> hide #!1 models

> ui tool show Segmentations

Created segmentation sphere cursor with ID #8  
Created segmentation sphere cursor with ID #9  
Created segmentation sphere cursor with ID #10  

> ui view fourup

> ui view default

Created segmentation sphere cursor with ID #8  

> vr false

Created segmentation sphere cursor with ID #8  
Created segmentation sphere cursor with ID #9  
Created segmentation sphere cursor with ID #10  

> ui view fourup

> ui view default

Created segmentation sphere cursor with ID #8  

No segmentations to remove.  

[Repeated 2 time(s)]

> view matrix models
> #7,-0.69659,0.64448,0.31529,5.4658,-0.45288,-0.73581,0.50348,251.43,0.55647,0.20793,0.80443,-27.067

> ui tool show "Segment Map"

Segmenting cryosparc_P29_J200_class_03_final_volume.mrc, density threshold
0.193347  
Showing 5 region surfaces  
134 watershed regions, grouped to 5 regions  
Showing cryosparc_P29_J200_class_03_final_volume.seg - 5 regions, 5 surfaces  

> view matrix models
> #7,-0.51648,0.83051,-0.20855,31.31,-0.85496,-0.48655,0.17975,329.56,0.04781,0.27114,0.96135,20.247

> view matrix models
> #7,-0.5949,-0.55608,-0.5804,347.72,-0.028978,-0.70676,0.70686,141.58,-0.80327,0.43733,0.40434,226.81

> select #8.3

1 model selected  

> view matrix models
> #8.3,0.94136,-0.27569,-0.19451,100.74,0.22639,0.94357,-0.24172,20.282,0.25018,0.18351,0.95065,-67.353

> ui mousemode right "move picked models"

> view matrix models
> #8.3,0.94136,-0.27569,-0.19451,-136.11,0.22639,0.94357,-0.24172,-107.04,0.25018,0.18351,0.95065,20.471

> view matrix models #8.1,1,0,0,-36.881,0,1,0,-72.449,0,0,1,-32.932

> view matrix models #8.2,1,0,0,-102.16,0,1,0,-121.13,0,0,1,-20.758

> view matrix models #8.4,1,0,0,5.5681,0,1,0,-65.658,0,0,1,-62.869

> view matrix models #8.5,1,0,0,-30.206,0,1,0,-32.739,0,0,1,-3.4144

> show #!1 models

> view matrix models
> #1,-0.72404,-0.22346,0.65256,25.223,0.68803,-0.301,0.66031,-226.57,0.048873,0.92707,0.37168,-52.498

> view matrix models #8.2,1,0,0,-193.29,0,1,0,-272.5,0,0,1,-42.43

> view matrix models #8.2,1,0,0,-174.3,0,1,0,-281.18,0,0,1,-47.596

> view matrix models
> #1,-0.72404,-0.22346,0.65256,24.619,0.68803,-0.301,0.66031,-226.74,0.048873,0.92707,0.37168,-61.072

> view matrix models #8.1,1,0,0,-150.83,0,1,0,-220.27,0,0,1,-25.699

> undo

[Repeated 5 time(s)]

> hide #8.1 models

> hide #8.2 models

> hide #8.3 models

> hide #8.4 models

> hide #8.5 models

> show #8.2 models

> volume #7 level 0.2547

> undo

> open "C:/Users/Gulshan
> maurya/Downloads/cryosparc_P29_J334_class_00_final_volume.mrc"

Opened cryosparc_P29_J334_class_00_final_volume.mrc as #9, grid size
128,128,128, pixel 2.6, shown at level 0.384, step 1, values float32  

> hide #!7 models

> view matrix models #9,1,0,0,-166.58,0,1,0,-39.729,0,0,1,-0.93111

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2178, in mouseMoveEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2185, in mouseReleaseEvent  
self._drag(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\volume_viewer.py", line 2182, in _drag  
cb(event)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\map\histogram.py", line 416, in move_marker_cb  
cb(m)  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1931, in
moved_marker_cb  
self.plane_viewer.on_color_changed()  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
AttributeError: 'NoneType' object has no attribute 'image_colors'  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 754, in
on_color_changed  
colors = self.view.drawing.parent.image_colors  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.13596 Core Profile Forward-Compatible Context 20.10.36 27.20.11036.3
OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: en_IN.cp950
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: AVITA
Model: NS14A8
OS: Microsoft Windows 11 Home Single Language (Build 26100)
Memory: 7,460,950,016
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx  
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.6.1
    build: 1.2.2.post1
    certifi: 2025.7.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.19
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.3
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.10.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.15
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.59.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.3.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.1
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

[Zach Pearson]

I have added a test for None in the offending function.