Opened 5 weeks ago
Closed 5 weeks ago
#19011 closed defect (duplicate)
'NoneType' object has no attribute 'image_colors'
| Reported by: | Owned by: | Zach Pearson | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | DICOM | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6.1-x86_64-i386-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/mmannhei/Downloads/cryosparc_P5_J829_003_volume_map.mrc
Opened cryosparc_P5_J829_003_volume_map.mrc as #1, grid size 460,460,460,
pixel 0.75, shown at level 0.00937, step 2, values float32
> open /Users/mmannhei/Downloads/cryosparc_P5_J830_map_locres.mrc
Opened cryosparc_P5_J830_map_locres.mrc as #2, grid size 460,460,460, pixel
0.75, shown at level 6.15, step 2, values float32
> open /Users/mmannhei/Downloads/cryosparc_P5_J831_map_sharp.mrc
Opened cryosparc_P5_J831_map_sharp.mrc as #3, grid size 460,460,460, pixel
0.75, shown at level 7.81e-05, step 2, values float32
> open /Users/mmannhei/Downloads/cryosparc_P5_J832_005_volume_map.mrc
Opened cryosparc_P5_J832_005_volume_map.mrc as #4, grid size 460,460,460,
pixel 0.75, shown at level 0.00873, step 2, values float32
> open /Users/mmannhei/Downloads/cryosparc_P5_J833_map_locres.mrc
Opened cryosparc_P5_J833_map_locres.mrc as #5, grid size 460,460,460, pixel
0.75, shown at level 5.26, step 2, values float32
> open /Users/mmannhei/Downloads/cryosparc_P5_J834_map_sharp.mrc
Opened cryosparc_P5_J834_map_sharp.mrc as #6, grid size 460,460,460, pixel
0.75, shown at level 0.000167, step 2, values float32
> ui tool show "Surface Color"
> hide #!1 models
> show #!1 models
> color sample #1.1 map #2 palette 2,#0433ff:3,#00f900:4,#ff2600 outsideColor
> #808080
Map values for surface "surface": minimum 0, mean 3.606, maximum 38.35
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> color single #1.1
> color sample #1.1 map #2 palette 2,#0433ff:3,#00f900:4,#ff2600 outsideColor
> #808080
Map values for surface "surface": minimum 0, mean 3.606, maximum 38.35
> volume #1 level 0.03208
> volume #1 level 0.02517
> color sample #3.1 map #2 palette 2,#0433ff:3,#00f900:4,#ff2600 outsideColor
> #808080
Map values for surface "surface": minimum 0, mean 3.201, maximum 32.05
> hide #!1 models
> show #!3 models
> volume #3 level 0.009089
> volume #3 level 0.08418
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> show #!4 models
> color sample #4.1 map #5 palette 2,#0433ff:3,#00f900:4,#ff2600 outsideColor
> #808080
Map values for surface "surface": minimum 0, mean 3.12, maximum 28.35
> volume #4 level 0.007244
> volume #4 level 0.02356
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> volume #1 level 0.025
> volume #4 level 0.025
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!4 models
> show #!1 models
> hide #!1 models
> show #!4 models
> hide #!4 models
> color sample #6.1 map #5 palette 2,#0433ff:3,#00f900:4,#ff2600 outsideColor
> #808080
Map values for surface "surface": minimum 0, mean 2.826, maximum 9.719
> show #!6 models
> volume #6 level 0.04597
> hide #!6 models
> show #!1 models
> volume #1 level 0.02855
> volume gaussian #1 sDev 2
Opened cryosparc_P5_J829_003_volume_map.mrc gaussian as #7, grid size
460,460,460, pixel 0.75, shown at step 1, values float32
> show #!1 models
> hide #!7 models
> volume #1 level 0.02348
> volume #1 level 0.02652
> hide #!1 models
> show #!7 models
> ui tool show Segmentations
Created segmentation sphere cursor with ID #8
Created segmentation sphere cursor with ID #9
Created segmentation sphere cursor with ID #10
> ui view fourup
> segmentations create #7
Opened segmentation 1 of cryosparc_P5_J829_003_volume_map.mrc gaussian as #11,
grid size 460,460,460, pixel 0.75, shown at level 0.501, step 1, values
float64
> ui tool show Segmentations
> undo
[Repeated 1 time(s)]
> close #8
> close #9
> close #10
> ui view
Missing or invalid "layout" argument: Expected one of 'default', 'fourup',
'overunder', or 'sidebyside'
> ui view default
> hide #!1 models
> show #!1 models
> close #11
> hide #!1 models
> show #!7 models
> show #!1 models
> hide #!7 models
> volume #1 level 0.02753
> show #!7 models
> hide #!1 models
> ui tool show "Segment Map"
Segmenting cryosparc_P5_J829_003_volume_map.mrc gaussian, density threshold
0.012928
Only showing 60 of 130 regions.
Showing 60 of 130 region surfaces
589 watershed regions, grouped to 130 regions
Showing cryosparc_P5_J829_003_volume_map gaussian.seg - 130 regions, 60
surfaces
> select #8.9
1 model selected
Drag select of 852, 12624 of 28916 triangles, 875, 30980 of 32288 triangles,
866, 12640 of 26736 triangles, 844, 16770 of 24016 triangles, 863, 17611 of
21352 triangles, 845, 11158 of 20548 triangles, 854, 13573 of 23288 triangles,
836, 10599 of 21740 triangles, 677, 13168 of 15916 triangles, 880, 16817 of
17760 triangles, 887, 6073 of 16972 triangles, 834, 6838 of 18940 triangles,
824, 7 cryosparc_P5_J829_003_volume_map.mrc gaussian
> select clear
Drag select of 852, 12045 of 28916 triangles, 875, 31897 of 32288 triangles,
866, 225 of 26736 triangles, 844, 12108 of 24016 triangles, 863, 19479 of
21352 triangles, 845, 5186 of 20548 triangles, 854, 2548 of 23288 triangles,
836, 12326 of 21740 triangles, 677, 14007 of 15916 triangles, 880, 17566 of
17760 triangles, 834, 8776 of 18940 triangles, 824, 6754 of 17740 triangles, 7
cryosparc_P5_J829_003_volume_map.mrc gaussian
> select #7
2 models selected
> select #7
2 models selected
> select #8.15
1 model selected
> select add #8.36
2 models selected
> select add #8.37
3 models selected
> select add #8.3
4 models selected
> select add #8.9
5 models selected
> hide #!7 models
> select subtract #7
5 models selected
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> close #8
Segmenting cryosparc_P5_J829_003_volume_map.mrc gaussian, density threshold
0.012928
Only showing 60 of 130 regions.
Showing 60 of 130 region surfaces
589 watershed regions, grouped to 130 regions
Showing cryosparc_P5_J829_003_volume_map gaussian.seg - 130 regions, 60
surfaces
> close #8
Segmenting cryosparc_P5_J829_003_volume_map.mrc gaussian, density threshold
0.012928
Only showing 80 of 130 regions.
Showing 80 of 130 region surfaces
589 watershed regions, grouped to 130 regions
Showing cryosparc_P5_J829_003_volume_map gaussian.seg - 130 regions, 80
surfaces
> close #8
Segmenting cryosparc_P5_J829_003_volume_map.mrc gaussian, density threshold
0.012928
Only showing 120 of 130 regions.
Showing 120 of 130 region surfaces
589 watershed regions, grouped to 130 regions
Showing cryosparc_P5_J829_003_volume_map gaussian.seg - 130 regions, 120
surfaces
> close #8
Segmenting cryosparc_P5_J829_003_volume_map.mrc gaussian, density threshold
0.012928
Only showing 130 of 130 regions.
Showing 130 region surfaces
589 watershed regions, grouped to 130 regions
Showing cryosparc_P5_J829_003_volume_map gaussian.seg - 130 regions, 130
surfaces
Drag select of 853, 23047 of 28916 triangles, 863, 31722 of 32288 triangles,
872, 22620 of 26736 triangles, 814, 17563 of 24016 triangles, 886, 835, 17510
of 20548 triangles, 873, 18417 of 23288 triangles, 811, 15691 of 21740
triangles, 605, 12949 of 15916 triangles, 864, 887, 5331 of 16972 triangles,
820, 9705 of 18940 triangles, 833, 650, 1838 of 10892 triangles, 749, 5361 of
10108 triangles, 838, 408, 688, 6066 of 7036 triangles, 453, 418, 4625 of 5836
triangles, 407
Grouped 21 regions
Grouped 109 regions
> undo
Showing 2 region surfaces
Saving 1 regions to mrc file...
Opened J829.mrc as #9, grid size 104,71,125, pixel 0.75, shown at step 1,
values float32
Wrote J829.mrc
> select #9
2 models selected
> hide #!9 models
Saving 2 regions to mrc file...
Opened J829_inv.mrc as #10, grid size 188,188,238, pixel 0.75, shown at step
1, values float32
Wrote J829_inv.mrc
> select subtract #9
2 models selected
> select add #8
3 models selected
> select subtract #8
Nothing selected
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!9 models
> hide #!9 models
> show #!10 models
> close #10
Showing 2 region surfaces
> select #8.1
1 model selected
> select #8.2
1 model selected
> select #8.1
1 model selected
Saving 1 regions to mrc file...
Opened J829_inv.mrc as #10, grid size 188,148,238, pixel 0.75, shown at step
1, values float32
Wrote J829_inv.mrc
> hide #!10 models
> hide #!8 models
> select add #8
3 models selected
> select subtract #8
Nothing selected
> show #!9 models
> show #!10 models
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2178, in mouseMoveEvent
self._drag(event)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2182, in _drag
cb(event)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb
cb(m)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1931, in
moved_marker_cb
self.plane_viewer.on_color_changed()
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 754, in
on_color_changed
colors = self.view.drawing.parent.image_colors
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'image_colors'
AttributeError: 'NoneType' object has no attribute 'image_colors'
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 754, in
on_color_changed
colors = self.view.drawing.parent.image_colors
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2178, in mouseMoveEvent
self._drag(event)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume_viewer.py", line 2182, in _drag
cb(event)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/histogram.py", line 416, in move_marker_cb
cb(m)
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 1931, in
moved_marker_cb
self.plane_viewer.on_color_changed()
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 754, in
on_color_changed
colors = self.view.drawing.parent.image_colors
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'image_colors'
AttributeError: 'NoneType' object has no attribute 'image_colors'
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/segmentations/ui/orthoplanes.py", line 754, in
on_color_changed
colors = self.view.drawing.parent.image_colors
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 4.1 ATI-7.0.23
OpenGL renderer: AMD Radeon Pro 5700 XT OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac20,2
Processor Name: 10-Core Intel Core i9
Processor Speed: 3.6 GHz
Number of Processors: 1
Total Number of Cores: 10
L2 Cache (per Core): 256 KB
L3 Cache: 20 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
System Firmware Version: 2075.140.4.0.0 (iBridge: 22.16.16083.0.0,0)
OS Loader Version: 583~2210
Software:
System Software Overview:
System Version: macOS 15.6.1 (24G90)
Kernel Version: Darwin 24.6.0
Time since boot: 42 days, 4 hours, 16 minutes
Graphics/Displays:
AMD Radeon Pro 5700 XT:
Chipset Model: AMD Radeon Pro 5700 XT
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 16 GB
Vendor: AMD (0x1002)
Device ID: 0x7319
Revision ID: 0x0040
ROM Revision: 113-D1820Q-231
VBIOS Version: 113-D182A2XT-013
Option ROM Version: 113-D182A2XT-013
EFI Driver Version: 01.01.231
Metal Support: Metal 3
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: Retina 5K (5120 x 2880)
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2423D:
Resolution: 1440 x 2560
UI Looks like: 1440 x 2560 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: BG4RVP3
Mirror: Off
Online: Yes
Rotation: 270
Connection Type: DVI or HDMI
Adapter Firmware Version: 7.55
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 5 weeks ago
| Component: | Unassigned → DICOM |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → 'NoneType' object has no attribute 'image_colors' |
comment:2 by , 5 weeks ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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