![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 23, 2025:
- 7:51 PM Ticket #18262 (ArtiaX: 'list' object is not callable) created by
- […]
- 7:38 PM Ticket #18261 (Crash in event loop) created by
- […]
- 6:01 PM ChangeLog edited by
- (diff)
- 5:34 PM Ticket #18260 (Unknown crash in Qt event loop after AlphaFold prediction completed) created by
- […]
- 5:15 PM Ticket #18259 (NIH preset fails on structure with no chains) created by
- […]
- 3:52 PM Ticket #18258 (Destroying dock widget initializes QFontComboBox type?) created by
- […]
- 2:49 PM Ticket #18257 (Crash in swap_buffers) created by
- […]
- 1:38 PM Ticket #18256 (Saving movie: No space left on device) created by
- […]
- 12:36 PM Ticket #18255 (Need to handle "Invalid histogram value" error so that it does not ...) created by
- […]
- 12:14 PM Ticket #18254 (ffmpeg: Permission denied) created by
- […]
- 11:49 AM Ticket #18253 (The GPU device instance has been suspended) created by
- […]
- 11:29 AM Ticket #18250 (volume splitbyzone: ArrayMemoryError) closed by
- limitation: Out of memory error. Tried to split map by color zone. 0.5 GB map. …
- 11:20 AM Ticket #18246 (AlphaFold JSON read as MOLE) closed by
- not a bug: Newer ChimeraX versions open .json as AlphaFold PAE format by default …
- 10:25 AM Ticket #18251 (Crash opening .cif) closed by
- can't reproduce: Need errant file to reproduce.
- 9:56 AM Ticket #18252 (Crash in garbage collection) closed by
- can't reproduce: Was disposing of a QFileDialog during garbage collection
- 9:48 AM Ticket #18248 (Crash reading XTC file) closed by
- can't reproduce: No indication what went wrong in the xtc library. Perhaps out of memory?
- 9:45 AM Ticket #18247 (AlphaFold JSON read as MOLE) closed by
- duplicate
- 8:16 AM Ticket #18252 (Crash in garbage collection) created by
- […]
- 7:57 AM Ticket #18251 (Crash opening .cif) created by
- […]
- 2:53 AM Ticket #18250 (volume splitbyzone: ArrayMemoryError) created by
- […]
- 2:42 AM Ticket #18249 (Crash destroying OpenGL context on exit) created by
- […]
Jul 22, 2025:
- 9:55 PM Ticket #18248 (Crash reading XTC file) created by
- […]
- 9:11 PM Ticket #18247 (AlphaFold JSON read as MOLE) created by
- […]
- 8:59 PM Ticket #18246 (AlphaFold JSON read as MOLE) created by
- […]
- 8:29 PM Ticket #18245 (ChimeraX hangs recomputing RMSD headers for sequence viewer when ...) created by
- […]
- 3:42 PM Dev2025-7-28 edited by
- (diff)
- 1:58 PM Ticket #18242 (Save movie: No space left on device) closed by
- limitation: Out of disk space recording a movie.
- 1:32 PM Ticket #18244 (Save movie: No space left on device) closed by
- duplicate
- 1:30 PM Ticket #18243 (Save movie: No space left on device) closed by
- duplicate
- 1:29 PM Ticket #18244 (Save movie: No space left on device) created by
- […]
- 1:13 PM Ticket #18243 (Save movie: No space left on device) created by
- […]
- 1:13 PM Ticket #18242 (Save movie: No space left on device) created by
- […]
- 11:27 AM Dev2025-7-28 created by
- 11:27 AM DeveloperMeetings edited by
- (diff)
- 9:26 AM Ticket #18226 (Crash using open/save dialog) closed by
- can't reproduce: Again thanks for the info. Unfortunately that means that it isn't …
- 9:23 AM Ticket #18241 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:22 AM Ticket #18240 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 9:22 AM Ticket #18239 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:20 AM Ticket #18238 (mshMIGPerform crash) closed by
- can't reproduce: Similar to #17777
- 9:16 AM Ticket #18236 (Crash using open/save dialog) closed by
- can't reproduce
- 6:23 AM Ticket #18241 (Crash on Mac waking from sleep) created by
- […]
- 5:04 AM Ticket #18240 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 1:18 AM Ticket #18239 (Crash on Mac waking from sleep) created by
- […]
Jul 21, 2025:
- 9:29 PM Ticket #18238 (mshMIGPerform crash) created by
- […]
- 6:07 PM Ticket #18221 (Profile Grid crash on Windows) closed by
- fixed: Fix: …
- 4:03 PM Ticket #18237 (Show white-on-black SVGs for segmentations controls when in dark mode) created by
- 3:53 PM Ticket #18236 (Crash using open/save dialog) created by
- […]
- 3:38 PM Dev2025-7-21 edited by
- (diff)
- 3:38 PM Dev2025-7-21 edited by
- (diff)
- 3:37 PM Dev2025-7-21 edited by
- (diff)
- 2:53 PM Dev2025-7-21 edited by
- (diff)
- 2:02 PM Ticket #18235 (Crash on Mac waking from sleep) closed by
- duplicate
- 2:02 PM Ticket #18234 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 1:56 PM Ticket #18231 (mshMIGPerform crash) closed by
- can't reproduce: Similar to #17777
- 1:55 PM Ticket #18230 (mshMIGPerform crash) closed by
- can't reproduce: Similar to #17777
- 1:53 PM Ticket #18229 (ffmpeg: Permission denied) closed by
- duplicate: Hi Wenhe, Thanks for reporting this problem. It will be fixed in the …
- 1:48 PM Ticket #18235 (Crash on Mac waking from sleep) created by
- […]
- 1:48 PM Ticket #18228 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:31 PM Ticket #18234 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:26 PM Ticket #18225 (Crash in event loop in QDockWidget::event) closed by
- can't reproduce: Was showing AlphaFold tool at the time
- 12:57 PM Dev2025-7-21 edited by
- (diff)
- 12:54 PM Ticket #18232 (Front center of rotation problem with Acer 3D display) closed by
- fixed: Fixed. Used the actual openxr reported field of view which was 45 …
- 12:46 PM Ticket #18224 (Session restore: KeyError: "combine") closed by
- duplicate: Duplicate of #17081; they all seem to involve volumes not being restored
- 12:38 PM Ticket #18223 (Profile Grid crash on Windows) closed by
- duplicate
- 12:37 PM Ticket #18233 (pyproject.toml: tool.chimerax.extra-files fails on second run) created by
- […]
- 12:35 PM Ticket #18220 (Unsupported scale factor detected on Display) closed by
- nonchimerax: The crash was a typical Apple Intel graphics driver crash. I don't …
- 12:35 PM Ticket #18222 (Profile Grid crash on Windows) closed by
- duplicate
- 12:09 PM Ticket #18232 (Front center of rotation problem with Acer 3D display) created by
- […]
- 12:07 PM Ticket #18219 (ChimeraX bug report submission) closed by
- not a bug
Jul 20, 2025:
- 6:33 PM Ticket #18231 (mshMIGPerform crash) created by
- […]
- 3:09 AM Ticket #18230 (mshMIGPerform crash) created by
- […]
Jul 19, 2025:
- 6:25 PM Ticket #18229 (ffmpeg: Permission denied) created by
- […]
- 11:58 AM Ticket #18228 (Crash on Mac waking from sleep) created by
- […]
Jul 18, 2025:
- 5:58 PM Ticket #18227 (Ubuntu on Wayland login session gets Mesa driver even when Nvidia installed) created by
- […]
- 9:42 AM Ticket #18226 (Crash using open/save dialog) created by
- […]
- 7:24 AM Ticket #18225 (Crash in event loop in QDockWidget::event) created by
- […]
- 7:03 AM Ticket #18224 (Session restore: KeyError: "combine") created by
- […]
- 4:18 AM Ticket #18223 (Profile Grid crash on Windows) created by
- […]
- 2:46 AM Ticket #18222 (Profile Grid crash on Windows) created by
- […]
- 2:37 AM Ticket #18221 (Profile Grid crash on Windows) created by
- […]
- 2:13 AM Ticket #18220 (Unsupported scale factor detected on Display) created by
- […]
Jul 17, 2025:
- 5:19 PM Ticket #18219 (ChimeraX bug report submission) created by
- […]
- 1:28 PM Ticket #18213 (Surface Color: colors inverted) closed by
- fixed: Fixed in 1.10.1 and 1.11 daily builds. The colors were not reversed, …
- 1:26 PM Ticket #18115 (Surface color vs. resolution) closed by
- fixed: Fixed. Another report #18213 of this problem with a screenshot helped …
- 10:34 AM Ticket #18218 (kvfinder: self._positions is None) closed by
- can't reproduce: I cannot reproduce this on our Windows 11 machine. It's also a …
- 10:13 AM Ticket #18217 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:12 AM Ticket #18216 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:11 AM Ticket #18215 (MemoryError opening mmCIF files) closed by
- can't reproduce
- 9:55 AM Ticket #18218 (kvfinder: self._positions is None) created by
- […]
- 7:54 AM Ticket #18217 (Crash on Mac waking from sleep) created by
- […]
- 5:29 AM Ticket #18216 (Crash on Mac waking from sleep) created by
- […]
- 5:02 AM Ticket #18215 (MemoryError opening mmCIF files) created by
- […]
Jul 16, 2025:
- 8:24 PM Ticket #18214 (XMAS: KeyError: 'PSMID') created by
- […]
- 7:36 PM Ticket #18213 (Surface Color: colors inverted) created by
- […] color inversion.png
- 3:21 PM Ticket #18199 (Crash in glBufferSubData, and error opening stack of 2D TIFF images) closed by
- fixed: Fixed opening stack of 2D tiff images in ChimeraX 1.10.1 and 1.11 …
- 2:15 PM Ticket #18097 (Thermal Ellipsoids: setEnabled(self, a0: bool): argument 1 has ...) closed by
- fixed: Fix: …
- 1:33 PM Ticket #18211 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:28 PM Ticket #18208 (Session restore: Compressed file ended before the end-of-stream marker ...) closed by
- can't reproduce: Truncated file?
- 1:26 PM Ticket #18207 (Crash using open/save dialog) closed by
- can't reproduce
- 12:48 PM Ticket #18212 (mmCIF fetch: URL can't contain control characters) created by
- […]
- 12:48 PM Ticket #18211 (Crash on Mac waking from sleep) created by
- […]
- 11:48 AM Ticket #18204 (Crash destroying OpenGL context on exit) closed by
- duplicate: Build is from before the fix went in, though there is no obvious …
- 11:32 AM Ticket #18202 (UnicodeDecodeError opening PyMOL .pse file as .sdf) closed by
- not a bug
- 11:29 AM Ticket #18201 (Crash using/showing context menu) closed by
- can't reproduce
- 11:15 AM Ticket #18210 (Copick: move copick planes: 'Session' object has no attribute 'ArtiaX') created by
- […]
- 9:51 AM Ticket #18200 (Crash getting GIL / threads) closed by
- can't reproduce
- 9:42 AM Ticket #18209 (Crash on Mac waking from sleep) created by
- […]
- 9:12 AM Ticket #18208 (Session restore: Compressed file ended before the end-of-stream marker ...) created by
- […]
- 6:37 AM Ticket #18207 (Crash using open/save dialog) created by
- […]
- 5:07 AM Ticket #18206 (ISOLDE: various problems on Linux) created by
- […]
- 1:49 AM Ticket #18205 (AllMetal3D: session save: 'AllMetal3D' object has no attribute 'line_edit') created by
- […]
- 1:42 AM Ticket #18204 (Crash destroying OpenGL context on exit) created by
- […]
- 1:05 AM Ticket #18203 (Crash moving window between screens) created by
- […]
- 12:09 AM Ticket #18202 (UnicodeDecodeError opening PyMOL .pse file as .sdf) created by
- […]
Jul 15, 2025:
- 1:43 PM Ticket #18201 (Crash using/showing context menu) created by
- […]
- 1:24 PM Ticket #18200 (Crash getting GIL / threads) created by
- […]
- 12:54 PM Ticket #18041 (Boltz installation failure) closed by
- limitation: Great! Glad it worked. It was hard to find the xcode license …
- 11:23 AM Ticket #18199 (Crash in glBufferSubData, and error opening stack of 2D TIFF images) created by
- […]
- 9:49 AM Dev2025-7-21 created by
- 9:49 AM DeveloperMeetings edited by
- (diff)
- 9:40 AM Ticket #18198 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:39 AM Ticket #18197 (Restore session: _pickle.UnpicklingError: invalid load key) closed by
- duplicate: Version 1.1!
- 9:37 AM Ticket #18196 (Crash in event loop) closed by
- can't reproduce
- 9:36 AM Ticket #18195 (Crash using open/save dialog) closed by
- can't reproduce
- 3:40 AM Ticket #18198 (Crash on Mac waking from sleep) created by
- […]
- 12:51 AM Ticket #18197 (Restore session: _pickle.UnpicklingError: invalid load key) created by
- […]
Jul 14, 2025:
- 8:18 PM Ticket #18196 (Crash in event loop) created by
- […]
- 6:31 PM Ticket #18195 (Crash using open/save dialog) created by
- […]
- 4:16 PM Dev2025-7-14 edited by
- (diff)
- 3:09 PM Dev2025-7-14 edited by
- (diff)
- 11:04 AM Dev2025-7-14 edited by
- (diff)
- 10:13 AM Ticket #18193 (Crash in swap_buffers) closed by
- nonchimerax: Crash in graphics driver, obscure Nvidia T500 with 2 GB or 4 GB of memory.
- 10:09 AM Ticket #18194 (Crash at startup) closed by
- can't reproduce: Remote display
- 10:07 AM Ticket #18194 (Crash at startup) created by
- […]
- 9:46 AM Ticket #18192 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:45 AM Ticket #18191 (Crash saving atomic state) closed by
- duplicate
- 9:44 AM Ticket #18190 (Crash saving atomic state) closed by
- can't reproduce
- 9:37 AM Ticket #18188 (Keyboard forwarding from window whose tool_instance is dead) closed by
- can't reproduce
- 9:35 AM Ticket #18187 (Keyboard forwarding from window whose tool_instance is dead) closed by
- can't reproduce
- 9:29 AM Ticket #18186 (Crash in event loop) closed by
- can't reproduce
- 5:57 AM Ticket #18193 (Crash in swap_buffers) created by
- […]
- 3:26 AM Ticket #18192 (Crash on Mac waking from sleep) created by
- […]
- 2:02 AM Ticket #18191 (Crash saving atomic state) created by
- […]
- 2:01 AM Ticket #18190 (Crash saving atomic state) created by
- […]
- 12:54 AM Ticket #18189 (CliX: path completion: File name too long) created by
- […]
Jul 13, 2025:
- 10:39 PM Ticket #18188 (Keyboard forwarding from window whose tool_instance is dead) created by
- […]
- 10:38 PM Ticket #18187 (Keyboard forwarding from window whose tool_instance is dead) created by
- […]
- 12:58 PM Ticket #18186 (Crash in event loop) created by
- […]
Jul 12, 2025:
Jul 11, 2025:
- 5:47 PM Ticket #18184 (ChimeraX build on Windows fails due to pip check OpenMM nvidia requirements) created by
- ChimeraX build from scratch on Windows with current source fails …
- 11:49 AM Ticket #18183 (Mac multiple display crash) closed by
- duplicate
- 11:42 AM Ticket #18181 (Error restoring session: HDF5 file signature not found) closed by
- can't reproduce
- 11:37 AM Ticket #18178 (Empty bug report) closed by
- duplicate: Duplicate of #18179
- 11:26 AM Ticket #18176 (Crash in event loop on linux, fixed by updating mesa) closed by
- nonchimerax
- 10:59 AM Ticket #18183 (Mac multiple display crash) created by
- […]
- 10:40 AM Ticket #18182 (Warnings in log: Mismatch between Cocoa and Carbon) created by
- […] error messages_250606.txt
- 8:08 AM Ticket #18181 (Error restoring session: HDF5 file signature not found) created by
- […]
- 6:37 AM Ticket #18180 (Unable to restore session, blastprotein missing argument, ChimeraX 1.3) created by
- […]
Jul 10, 2025:
- 9:47 PM Ticket #18179 (Log not shown at startup?) created by
- […]
- 9:23 PM Ticket #18178 (Empty bug report) created by
- […]
- 5:47 PM Ticket #18177 (ffmpeg permission denied, Mac, ChimeraX 1.10) created by
- […]
- 5:05 PM Ticket #9040 (Session restore: No module named 'lz4._version') closed by
- fixed: I believe this has been fixed in newer versions of ChimeraX for a while.
- 5:04 PM Ticket #16129 (Session restore: LZ4F_decompress failed) closed by
- can't reproduce: Need session file to reproduce.
- 4:21 PM Ticket #18155 (Toolbar missing tabs) closed by
- fixed: Glad to help.
- 1:47 PM Ticket #18158 (Incorrect ring pyridine protonation) closed by
- fixed: Fixed. Fix will be in tomorrow's daily build and in the upcoming …
- 1:21 PM Ticket #18176 (Crash in event loop on linux, fixed by updating mesa) created by
- […]
- 11:22 AM Ticket #18175 (Permission denied executing ffmpeg) closed by
- duplicate: See comment 3 on #18164
- 11:13 AM Ticket #18174 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:11 AM Ticket #18173 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by
- duplicate: Fixed on 6/20/25
- 11:08 AM Ticket #18172 (Crash on Mac waking from sleep) closed by
- duplicate: Hi Dima, Thanks for reporting this problem. It is fixed in the …
- 10:39 AM Ticket #18169 (Crash changing volume level) closed by
- nonchimerax: ChimeraX crashed in the OpenGL graphics driver drawing map surfaces. …
- 10:33 AM Ticket #18162 (Unable to save MolecularSurface in session: ArrayMemoryError) closed by
- limitation: Saving a ChimeraX session file ran out of memory. Your computer only …
- 10:31 AM Ticket #18168 (Graphics hardware encountered an error and was reset) closed by
- duplicate
- 10:30 AM Ticket #18167 (Crash using open/save dialog) closed by
- can't reproduce
- 10:28 AM Ticket #18166 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce
- 10:25 AM Ticket #18165 (Unknown crash) closed by
- can't reproduce
- 10:13 AM Ticket #18163 (mshMIGPerform crash) closed by
- can't reproduce: Similar to #17777
- 8:53 AM Ticket #18175 (Permission denied executing ffmpeg) created by
- […]
- 6:28 AM Ticket #18174 (Crash on Mac waking from sleep) created by
- […]
- 4:54 AM Ticket #18173 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by
- […]
- 4:32 AM Ticket #18172 (Crash on Mac waking from sleep) created by
- […]
- 2:51 AM Ticket #18171 (No CUDA/OpenCL) created by
- […]
- 2:37 AM Ticket #18170 (Crash using open/save dialog) created by
- […]
- 2:02 AM Ticket #18169 (Crash changing volume level) created by
- […]
- 1:40 AM Ticket #18168 (Graphics hardware encountered an error and was reset) created by
- […]
- 1:04 AM Ticket #18167 (Crash using open/save dialog) created by
- […]
- 12:52 AM Ticket #18166 (UnicodeDecodeError reading PDB file) created by
- […]
Jul 9, 2025:
- 10:40 PM Ticket #18165 (Unknown crash) created by
- […]
- 9:56 PM Ticket #18164 (Permission denied executing ffmpeg) created by
- […]
- 8:32 PM Ticket #18163 (mshMIGPerform crash) created by
- […]
- 7:11 PM Ticket #18162 (Unable to save MolecularSurface in session: ArrayMemoryError) created by
- […]
- 5:07 PM Ticket #18161 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:06 PM Ticket #18160 (Graphics hardware encountered an error and was reset) closed by
- duplicate
- 5:05 PM Ticket #18159 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:00 PM Ticket #18157 (Crash in event loop) closed by
- can't reproduce
- 4:57 PM Ticket #18161 (Crash on Mac waking from sleep) created by
- […]
- 4:51 PM Ticket #18160 (Graphics hardware encountered an error and was reset) created by
- […]
- 3:33 PM Ticket #18159 (Crash on Mac waking from sleep) created by
- […]
- 2:59 PM Ticket #18158 (Incorrect ring pyridine protonation) created by
- […]
- 11:53 AM Ticket #18157 (Crash in event loop) created by
- […]
- 11:47 AM Ticket #18083 (Modeller mismatch failure) closed by
- fixed: Fix will be in the next daily build. Fix: …
- 11:38 AM Ticket #18156 ('pip install pyKVFinder' fails with empty error message) created by
- […]
- 10:30 AM Ticket #18154 ("No known data format 'MTZ'") closed by
- duplicate
- 10:28 AM Ticket #18155 (Toolbar missing tabs) created by
- […]
- 10:13 AM Ticket #18154 ("No known data format 'MTZ'") created by
- […]
- 9:51 AM Ticket #18153 (Bug loading Chimera session) closed by
- duplicate
- 9:42 AM Ticket #18152 (Crash in readcif::CIFFile::parse) closed by
- can't reproduce: 1.6 release candidate
- 9:41 AM Ticket #18151 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:37 AM Ticket #18148 (Garbage collection crash in matplotlib while fetching DICOM from TCIA) closed by
- can't reproduce
- 9:35 AM Ticket #18147 (mshMIGPerform crash) closed by
- can't reproduce: Similar to #17777
- 9:31 AM Ticket #18146 (Crash using open/save dialog) closed by
- can't reproduce: Also remote display
- 9:25 AM Ticket #18143 (ChimeraX bug report submission) closed by
- fixed
- 8:38 AM Ticket #18153 (Bug loading Chimera session) created by
- […] p53_chimera_sesh.cxs
- 8:37 AM Ticket #18152 (Crash in readcif::CIFFile::parse) created by
- […]
- 7:53 AM Ticket #18151 (Crash on Mac waking from sleep) created by
- […]
- 6:58 AM Ticket #18150 (glTexImage3D: out of memory after "artiax view xy") created by
- […]
- 1:29 AM Ticket #18149 (DiffFit: No module named 'torch._prims_common') created by
- […]
- 12:15 AM Ticket #18148 (Garbage collection crash in matplotlib while fetching DICOM from TCIA) created by
- […]
Jul 8, 2025:
- 7:45 PM Ticket #18147 (mshMIGPerform crash) created by
- […]
- 3:30 PM Ticket #18144 (ChimeraX bug report submission) closed by
- fixed
- 3:28 PM Ticket #18141 (Bug reports blocked) closed by
- fixed: Done
- 3:27 PM Ticket #18146 (Crash using open/save dialog) created by
- […]
- 3:22 PM Ticket #18145 (glTexImage3D: out of memory after ArtiaX operation) created by
- […]
- 2:20 PM Ticket #18144 (ChimeraX bug report submission) created by
- […]
- 1:57 PM Ticket #18143 (ChimeraX bug report submission) created by
- […]
- 12:39 PM Ticket #18142 (ChimeraX bug report submission) closed by
- not a bug
- 12:37 PM Ticket #18142 (ChimeraX bug report submission) created by
- […]
- 10:19 AM Dev2025-7-14 created by
- 10:19 AM DeveloperMeetings edited by
- (diff)
- 9:39 AM Ticket #18141 (Bug reports blocked) created by
- Report a Bug no longer works ("Error while submitting feedback"), …
- 9:16 AM DeveloperMeetings edited by
- (diff)
- 9:15 AM 2025-7-3 edited by
- (diff)
Jul 7, 2025:
- 12:20 PM Dev2025-7-7 edited by
- (diff)
- 11:06 AM Dev2025-7-7 edited by
- (diff)
- 11:03 AM Dev2025-7-7 edited by
- (diff)
- 11:01 AM Dev2025-7-7 created by
- 10:51 AM DeveloperMeetings edited by
- (diff)
- 10:50 AM 2025-7-3 created by
- 10:48 AM Ticket #18138 (Crash in using remote display) closed by
- limitation: Remote display
- 10:47 AM Ticket #18137 (Crash in event loop) closed by
- can't reproduce
- 10:39 AM DeveloperMeetings edited by
- (diff)
- 10:30 AM Ticket #18136 (Crash in event loop / bug-report server unavailable) closed by
- can't reproduce: The server load may be affecting more than Trac…
- 10:28 AM Ticket #18134 (Error in glGetFramebufferAttachmentParameteriv) closed by
- nonchimerax: Probably a graphics driver problem. Using 2015 Intel graphics driver …
- 10:19 AM Ticket #18140 (Bug loading Chimera session) created by
- […] p53_chimera_sesh.cxs
- 10:08 AM Ticket #18132 (Crash on Mac waking from sleep) closed by
- duplicate
Jul 6, 2025:
- 8:03 AM Ticket #18139 (Some kind of crash involving AlphaFold JSON) created by
- […] fold_2025_05_21_23_12_full_data_0.json
- 3:11 AM Ticket #18138 (Crash in using remote display) created by
- […]
- 2:59 AM Ticket #18137 (Crash in event loop) created by
- […]
Jul 4, 2025:
- 11:48 PM Ticket #18136 (Crash in event loop / bug-report server unavailable) created by
- […]
- 1:09 AM Ticket #18135 (Crash in event loop) created by
- […] cluster1_1.pdb
Jul 3, 2025:
- 8:21 PM Ticket #18134 (Error in glGetFramebufferAttachmentParameteriv) created by
- […]
- 5:34 PM Ticket #18133 (Registration recursion) created by
- […]
- 5:26 PM Ticket #17970 (Windows PyPi OpenMM: no CUDA) reopened by
- 4:31 PM Ticket #18132 (Crash on Mac waking from sleep) created by
- […]
- 3:14 PM Ticket #18131 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel says what we know about this crash …
- 1:42 PM Ticket #18130 (Crash using open/save dialog) closed by
- can't reproduce: This is from after turning off garbage collection, so that didn't fix …
- 1:28 PM Ticket #18129 (glClear: invalid enumerant) closed by
- nonchimerax: Error from 10 year old Intel graphics driver 10.18.15.4248.
- 1:25 PM Ticket #18125 (PAE file: Operation not permitted) closed by
- fixed: Made AlphaFold Error Plot not give error if directory containing …
- 1:18 PM Ticket #18127 (PAE file: Operation not permitted) closed by
- duplicate: Same reporter, same error as #18125.
- 11:26 AM Ticket #18131 (Crash on Mac waking from sleep) created by
- […]
- 11:05 AM Ticket #18130 (Crash using open/save dialog) created by
- […] proteina que no me da la segunda secuencia.cxs
- 10:58 AM Ticket #18123 (QOpenGLShader::compile(Fragment): ERROR: 4:1: 'textureSampler' : ...) closed by
- nonchimerax: OpenGL shader compilation error was compiling a Qt GUI shader, not …
- 10:54 AM Ticket #18128 (Open dcm file: missing GDCM dependency) closed by
- duplicate: Duplicate of #18104
- 10:49 AM Ticket #18126 (Crash in event loop) closed by
- can't reproduce: Not even in Qt code really AFAICT, other than top-level processing of …
- 10:16 AM Ticket #18124 (No known data format 'MTZ') closed by
- duplicate: Hi Brandi, Thanks for reporting this problem. It has been fixed in …
- 8:07 AM Ticket #18129 (glClear: invalid enumerant) created by
- […]
Jul 2, 2025:
- 6:44 PM Ticket #18128 (Open dcm file: missing GDCM dependency) created by
- […]
- 5:49 PM Ticket #18127 (PAE file: Operation not permitted) created by
- […]
- 4:55 PM Ticket #18126 (Crash in event loop) created by
- […]
- 2:14 PM Ticket #18125 (PAE file: Operation not permitted) created by
- […]
- 10:38 AM Ticket #18124 (No known data format 'MTZ') created by
- […]
- 10:06 AM Ticket #18123 (QOpenGLShader::compile(Fragment): ERROR: 4:1: 'textureSampler' : ...) created by
- […]
- 9:28 AM Ticket #18121 (UnicodeDecodeError when numpy check SVE support) closed by
- can't reproduce: Not using that version of numpy anymore.
- 9:25 AM Ticket #18120 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce
- 9:24 AM Ticket #18119 (Crash at exit in Qt cleanup routines) closed by
- duplicate
- 9:23 AM Ticket #18118 (Crash at exit in Qt cleanup routines) closed by
- duplicate
- 9:14 AM Ticket #18114 (Unknown MD coordinate format: psf) closed by
- not a bug: Can't specify PSF as a coordinates file.
- 6:12 AM Ticket #18122 (ISOLDE: cannot access local variable 'o' where it is not associated ...) created by
- […]
- 3:46 AM Ticket #18121 (UnicodeDecodeError when numpy check SVE support) created by
- […]
- 12:45 AM Ticket #18120 (UnicodeDecodeError reading PDB file) created by
- […]
Jul 1, 2025:
- 10:14 PM Ticket #18119 (Crash at exit in Qt cleanup routines) created by
- […]
- 10:11 PM Ticket #18118 (Crash at exit in Qt cleanup routines) created by
- […]
- 7:11 PM Ticket #18090 (_matching_pae_file: Operation not permitted) closed by
- not a bug: Permission denied trying to look at files in the directory containing …
- 6:22 PM Ticket #18111 (Crash in graphics driver) closed by
- can't reproduce: ChimeraX was using 24 GB of memory on this MacAir with 24 GB of …
- 6:14 PM Ticket #18102 (glBufferSubData: out of memory) closed by
- nonchimerax: Probable graphics driver problem.
- 5:59 PM Ticket #18117 (Model panel grouping controls) created by
- Also, would it be possible at some point to add a GUI option for …
- 5:56 PM Ticket #18116 (Enhanced model panel next/previous behavior) created by
- I use the next/previous buttons (sequential display controls) in the …
- 5:34 PM Ticket #18115 (Surface color vs. resolution) created by
- […]
- 1:21 PM Ticket #18114 (Unknown MD coordinate format: psf) created by
- […]
- 10:45 AM Ticket #18113 (Crash using open/save dialog) closed by
- can't reproduce
- 10:39 AM Ticket #18110 (core.history.ObjectHistory: 'utf-8' codec can't encode characters: ...) closed by
- duplicate
- 10:29 AM Ticket #18108 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:28 AM Ticket #18107 (Crash at exit in Qt cleanup routines) closed by
- duplicate
- 10:27 AM Ticket #18106 (Crash in garbage collection) closed by
- duplicate
- 10:26 AM Ticket #18105 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:18 AM Ticket #18103 (Crash in python_instances_of_class saving session) closed by
- duplicate
- 9:48 AM Ticket #18113 (Crash using open/save dialog) created by
- […]
- 6:07 AM Ticket #18112 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 5:08 AM Ticket #18111 (Crash in graphics driver) created by
- […]
- 2:24 AM Ticket #18110 (core.history.ObjectHistory: 'utf-8' codec can't encode characters: ...) created by
- […]
- 2:17 AM Ticket #18109 (core.history.ObjectHistory: 'utf-8' codec can't encode characters: ...) created by
- […]
- 1:58 AM Ticket #18108 (MemoryError opening mmCIF files) created by
- […]
- 1:22 AM Ticket #18107 (Crash at exit in Qt cleanup routines) created by
- […]
- 1:09 AM Ticket #18106 (Crash in garbage collection) created by
- […]
- 12:15 AM Ticket #18105 (Crash on Mac waking from sleep) created by
- […]
Jun 30, 2025:
- 6:39 PM Ticket #18101 (broken link) closed by
- fixed: Should be fixed shortly.
- 4:51 PM Ticket #18104 (Open dcm file: missing GDCM dependency) created by
- […]
- 3:15 PM WikiStart edited by
- (diff)
- 1:22 PM Ticket #18103 (Crash in python_instances_of_class saving session) created by
- […]
- 12:36 PM Ticket #18102 (glBufferSubData: out of memory) created by
- […]
- 12:01 PM Ticket #18101 (broken link) created by
- […]
- 11:00 AM Ticket #18100 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Would need the input file to diagnose
- 10:54 AM Ticket #18098 (Thermal Ellipsoids: setEnabled(self, a0: bool): argument 1 has ...) closed by
- duplicate
- 10:50 AM Ticket #18096 (Crash in garbage collection) closed by
- duplicate
- 10:48 AM Ticket #18095 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate
- 10:43 AM Ticket #18094 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:41 AM Ticket #18093 (Unknown crash) closed by
- can't reproduce: Again, remote display without any particular indication of a graphics …
- 10:38 AM Ticket #18092 (Crash in __del__) closed by
- can't reproduce
- 10:33 AM Ticket #18091 (Crash in event loop) closed by
- can't reproduce: Apparently remote display, though nothing particularly indicative of …
- 7:49 AM Ticket #18100 (UnicodeDecodeError reading PDB file) created by
- […]
- 6:38 AM Ticket #18099 (Crash asking for registration) created by
- […]
- 5:26 AM Ticket #18098 (Thermal Ellipsoids: setEnabled(self, a0: bool): argument 1 has ...) created by
- […]
- 5:26 AM Ticket #18097 (Thermal Ellipsoids: setEnabled(self, a0: bool): argument 1 has ...) created by
- […]
- 4:00 AM Ticket #18096 (Crash in garbage collection) created by
- […]
- 12:56 AM Ticket #18095 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
Jun 29, 2025:
Jun 28, 2025:
- 11:20 PM Ticket #18093 (Unknown crash) created by
- […]
- 9:01 PM Ticket #18092 (Crash in __del__) created by
- […]
- 5:03 AM Ticket #18091 (Crash in event loop) created by
- […]
Jun 27, 2025:
- 11:31 AM Ticket #18060 (Trajectory h-bonds problems) closed by
- fixed: Fixed the bad hydrogen bonds. Non-coordset nucleotide depictions …
- 9:26 AM Ticket #18089 (Regular PDB file opened in MD Viewer) closed by
- duplicate
- 2:28 AM Ticket #18090 (_matching_pae_file: Operation not permitted) created by
- […]
- 1:24 AM Ticket #18089 (Regular PDB file opened in MD Viewer) created by
- […]
- 12:20 AM Ticket #18088 (Error in glGetFramebufferAttachmentParameteriv) created by
- […]
Jun 26, 2025:
- 4:06 PM Ticket #17824 (Swapna and other operations slow) closed by
- fixed: The code that updated the chain sequence to reflect the new residue …
- 12:18 PM DeveloperMeetings edited by
- (diff)
- 12:16 PM DeveloperMeetings edited by
- (diff)
- 12:15 PM 2025-6-12 edited by
- (diff)
- 12:14 PM Ticket #18087 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:14 PM 2025-6-26 created by
- 11:36 AM Milestone 1.10 completed
- Anisotropic ellipsoids. Structure alignment based on provided …
- 11:15 AM Ticket #18082 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Failed drawing status line during an expose event. Maybe this is …
- 11:07 AM Ticket #18081 (Crash on Mac waking from sleep) closed by
- duplicate: This is a known ChimeraX crash and the bug report panel you used …
- 11:05 AM Ticket #18076 ('align' command 'move' keyword does not accept "structure atoms" argument) closed by
- fixed: Added align command move option value structure-atoms as a synonym …
- 11:00 AM Ticket #18084 ('DunbrackRotamerLibrary' object has no attribute 'display_name') closed by
- duplicate: Hi Jade, Thanks for reporting this problem. If you were using a more …
- 10:55 AM Ticket #18073 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: ChimeraX 1.9 failed to start on Wayland due to having no OpenGL …
- 10:51 AM Ticket #18069 (Crash in _get_polymer_spline) closed by
- can't reproduce: I agree probably bad atomic model. It should not be possible to crash …
- 10:43 AM Ticket #18068 (Crash in glBufferSubData) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:37 AM ChangeLog edited by
- (diff)
- 10:06 AM Ticket #18080 (Crash on Mac waking from sleep) closed by
- duplicate
- 7:33 AM Ticket #18087 (Crash on Mac waking from sleep) created by
- […]
- 7:22 AM Ticket #18086 (alphafold pae: JSONDecodeError (DropBox)) created by
- […]
- 6:53 AM Ticket #18085 (Boltz subprocess: Access is denied) created by
- […]
- 6:32 AM Ticket #18084 ('DunbrackRotamerLibrary' object has no attribute 'display_name') created by
- […]
- 5:14 AM Ticket #18083 (Modeller mismatch failure) created by
- […]
- 4:10 AM Ticket #18082 (glClear: invalid framebuffer operation) created by
- […]
Jun 25, 2025:
- 11:09 PM Ticket #18081 (Crash on Mac waking from sleep) created by
- […]
- 7:30 PM Ticket #18080 (Crash on Mac waking from sleep) created by
- […]
- 2:12 PM Ticket #17970 (Windows PyPi OpenMM: no CUDA) closed by
- fixed
- 12:56 PM Ticket #18078 (Crash in garbage collection) closed by
- duplicate
- 12:54 PM Ticket #18077 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:46 PM Ticket #18075 (Crash on Mac waking from sleep) closed by
- duplicate
- 12:45 PM Ticket #18074 (Attempt to retrieve context when no valid context) closed by
- duplicate: Wayland
- 12:42 PM Ticket #18072 (Session restore: Similar Structures: 'NoneType' object has no ...) closed by
- duplicate: Duplicate of #16968
- 12:03 PM Ticket #18071 (Session restore: Similar Structures: 'NoneType' object has no ...) closed by
- duplicate: Duplicate of #16968
- 11:06 AM Ticket #18070 (Crash using open/save dialog) closed by
- can't reproduce: On Mac!
- 10:56 AM Ticket #18067 (Toolshed hang) closed by
- duplicate
- 8:03 AM Ticket #18079 (Setting 'display' attribute of closed segmentation cursor) created by
- […]
- 6:47 AM Ticket #18078 (Crash in garbage collection) created by
- […]
- 6:28 AM Ticket #18077 (Crash on Mac waking from sleep) created by
- […]
- 5:40 AM Ticket #18076 ('align' command 'move' keyword does not accept "structure atoms" argument) created by
- […]
- 4:25 AM Ticket #18075 (Crash on Mac waking from sleep) created by
- […]
- 2:08 AM Ticket #18074 (Attempt to retrieve context when no valid context) created by
- […]
- 2:08 AM Ticket #18073 (Attempt to retrieve context when no valid context) created by
- […]
- 1:04 AM Ticket #18072 (Session restore: Similar Structures: 'NoneType' object has no ...) created by
- […]
- 1:04 AM Ticket #18071 (Session restore: Similar Structures: 'NoneType' object has no ...) created by
- […]
- 12:28 AM Ticket #18070 (Crash using open/save dialog) created by
- […]
Jun 24, 2025:
- 2:20 PM Ticket #18069 (Crash in _get_polymer_spline) created by
- […]
- 2:14 PM Ticket #18068 (Crash in glBufferSubData) created by
- […]
- 2:07 PM Ticket #18059 (Remove volume smoothLines option since it is no longer supported by OpenGL) closed by
- fixed: Thanks!
- 10:53 AM Ticket #18067 (Toolshed hang) created by
- […]
- 10:33 AM Ticket #18064 (Read .gro: 'Session' object has no attribute 'name') closed by
- can't reproduce: I see no way for the 'element' variable to be anything but an Element, …
- 10:18 AM Ticket #18035 (PAE matrix mismatch) closed by
- fixed: Fixed in daily build, not in 1.10. I made the PAE code guess if the …
- 9:26 AM Ticket #18066 (Crash in garbage collection) closed by
- duplicate
- 9:25 AM Ticket #18065 (Crash in garbage collection) closed by
- duplicate
- 9:22 AM Ticket #18063 (Crash in event loop) closed by
- can't reproduce: Seems basically the same as #17852
- 7:16 AM Ticket #18066 (Crash in garbage collection) created by
- […]
- 6:14 AM Ticket #18065 (Crash in garbage collection) created by
- […]
- 1:03 AM Ticket #18064 (Read .gro: 'Session' object has no attribute 'name') created by
- […]
Jun 23, 2025:
- 11:26 PM Ticket #18063 (Crash in event loop) created by
- […]
- 2:28 PM Ticket #18062 (Save dialog mmCIF option defaults differ from saving PDB.) created by
- […]
- 12:36 PM Ticket #18061 (Allow ChimeraX to run Boltz-2 predictions on user's computer) created by
- Boltz 2 released on June 6, 2025 and includes new features over Boltz …
- 12:20 PM Ticket #18052 ('name' not in Surface session-restore data) closed by
- can't reproduce: User has a session 2-2.cxs that refers to an MRC file that has bad …
- 12:05 PM Ticket #18058 (H-Bonds: acc_phi_psi() bad number of arguments) closed by
- can't reproduce: Works for standard 5oph entry
- 12:01 PM Ticket #18060 (Trajectory h-bonds problems) created by
- […]
- 11:53 AM Ticket #18057 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:52 AM Ticket #18056 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:49 AM Ticket #18053 (MemoryError opening mmCIF files) closed by
- duplicate: Hi Filip, Thanks for reporting this problem. It has been fixed in …
- 11:46 AM Ticket #18051 (Unknown crash) closed by
- can't reproduce
- 11:44 AM Ticket #18049 (Graphics hardware encountered an error and was reset) closed by
- limitation: This ChimeraX crash is caused by unstable Intel Mac graphics drivers. …
- 11:44 AM Ticket #18050 ('pip install pyKVFinder' fails with empty error message) closed by
- duplicate: Duplicate of #17229
- 11:41 AM Ticket #18045 (Problem reading .cmm file) closed by
- limitation: This error is from opening a ChimeraX .cmm file that is empty. An …
- 11:38 AM Ticket #18043 (Crash in drawing after 'view matrix') closed by
- can't reproduce: There is no indication in this Linux ChimeraX crash report of what …
- 11:30 AM Ticket #18046 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:27 AM Ticket #18059 (Remove volume smoothLines option since it is no longer supported by OpenGL) created by
- The volume command has a smoothLines option that is not implemented …
- 11:26 AM Ticket #18044 (KVFinder: some how cavity model is closed but still in table) closed by
- can't reproduce
- 10:06 AM Ticket #18058 (H-Bonds: acc_phi_psi() bad number of arguments) created by
- […]
- 9:43 AM Ticket #18057 (Crash on Mac waking from sleep) created by
- […]
- 7:09 AM Ticket #18056 (Crash on Mac waking from sleep) created by
- […]
- 6:54 AM Ticket #18055 (Add full-screen SBS stereo for Samsung Odyssey 3D display) created by
- Add a separate full-screen side-by-side stereo window that is separate …
- 6:46 AM Ticket #18054 (ChimeraX mailing list archives have many blank messages) created by
- The ChimeraX mailing list archive web pages often include blank …
- 4:31 AM Ticket #18053 (MemoryError opening mmCIF files) created by
- […]
- 4:25 AM Ticket #18052 ('name' not in Surface session-restore data) created by
- […]
- 1:46 AM Ticket #18051 (Unknown crash) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
