The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
File saved with one instance of chimeraX does not open in other.
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
> open "G:/My Drive/team-prime-
> editing/Manuscript/Chimera/pten_chimera_sesh.cxs"
Log from Mon Jun 30 20:20:41 2025UCSF ChimeraX version: 1.10rc202505160006
(2025-05-16)
© 2016-2025 Regents of the University of California. All rights reserved.
> open "D:/My Drive/team-prime-
> editing/Manuscript/Chimera/p53_chimera_sesh.cxs"
Log from Thu Jun 12 15:52:36 2025 Startup Messages
---
warning | Your computer has Intel graphics driver 6733 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this.
UCSF ChimeraX version: 1.10rc202505100155 (2025-05-10)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 2ac0
Summary of feedback from opening 2ac0 fetched from pdb
---
note | Fetching compressed mmCIF 2ac0 from http://files.rcsb.org/download/2ac0.cif
2ac0 title:
Structural Basis of DNA Recognition by p53 Tetramers (complex I) [more
info...]
Chain information for 2ac0 #1
---
Chain | Description | UniProt
A B C D | Cellular tumor antigen p53 | P53_HUMAN 94-293
E F G H | 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3' |
Non-standard residues in 2ac0 #1
---
ZN — zinc ion
37 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> hide atoms
> show cartoons
> show atoms /a,/b,/c,/d
Expected ',' or a keyword
> show /a,/b,/c,/d atoms
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show atoms /a, /b, /c, /d
Expected ',' or a keyword
> show atoms /a
Expected ',' or a keyword
> show atoms /a:
Expected ',' or a keyword
> show /a atoms
> show /a-/d atoms
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show /a-d atoms
> color blue /a
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color /a blue All
> color /b green
> color /d red
> color /c yellow
> hide /a,c,d
> hide /a,c,d cartoons
> remove /a-d:HOH
Unknown command: remove /a-d:HOH
> remove /a-d:HOH
Unknown command: remove /a-d:HOH
> remove /a-d:hoh
Unknown command: remove /a-d:hoh
> remove :hoh
Unknown command: remove :hoh
> select ::name="HOH"
1054 atoms, 1054 residues, 1 model selected
> remove sel
Unknown command: remove sel
> delete sel
> hide /c atoms
> hide atoms /c
Expected ',' or a keyword
> hide atoms /b
Expected ',' or a keyword
> hide /b atoms
> show /a,d atoms
> hide /d atoms
> show /c atoms
> hide /a,c atoms
> show /e-g atoms
> color #aaaaaa /b
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color /b #aaaaaa
> style stick
Changed 7156 atom styles
> color /b #ccccc
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color /b #cccccc
> color /a:254,257,251,285,248,255,194,266,244,242,281,245,241,105 #2B8231
> color /b:254,257,251,285,248,255,194,266,244,242,281,245,241,105 #2B8231
> color /b:220,135,161,127,189,234,151,156,342,136,143,258,278,134 #A03E9A
> show /d
> hide /d
> show /a
> show /a atoms
> show /a cartoons
> show /c cartoons
> color /e purple
> color /f orange
> delete /g,h
> color white /e,f
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color /e,f white
> color /a,c white
> transparcency /a,c,e,f 50
Unknown command: transparcency /a,c,e,f 50
> transparcency /a 50
Unknown command: transparcency /a 50
> transparency /a,c,e,f 50
> transparency /a,c,e,f 50 cartoons
> set bgColor white
> graphics silhouettes true
> color gray
> 35,72,109,110,111,113,120,125,126,138,141,152,154,155,159,163,178,179,180,190,195,196,197,215,216,218,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,276,277,279,286,290,325,334,337,344,347
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color gray
> /b:35,72,109,110,111,113,120,125,126,138,141,152,154,155,159,163,178,179,180,190,195,196,197,215,216,218,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,276,277,279,286,290,325,334,337,344,347
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color
> /b:35,72,109,110,111,113,120,125,126,138,141,152,154,155,159,163,178,179,180,190,195,196,197,215,216,218,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,276,277,279,286,290,325,334,337,344,347
> gray
> hide /d atoms
> hide /c atoms
> hide /b atoms
> hide /a atoms
> show
> /b:254,257,251,285,248,255,194,266,244,242,281,245,241,105,220,135,161,127,189,234,151,156,342,136,143,258,278,134
> atoms
> hide /e,f atoms
> hide /d
> lighting full
> lighting soft
> lighting simple
> lighting full
> save C:\Users\markkelly/Desktop\image1.png supersample 3
> save C:/Users/markkelly/Documents/pe_pathway/p53_chimera_sesh.cxs
——— End of log from Thu Jun 12 15:52:36 2025 ———
> view name session-start
opened ChimeraX session
> show cartoons /a-d
Expected ',' or a keyword
> show /a-d cartoons
> color white /d
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color /d white
> color /a-d white
> color
> show /e-h cartoons
> show /h
> show /e
> hide /e
> show cartoons /e
Expected ',' or a keyword
> show /e cartoons
> show /f cartoons
> show /g cartoons
> show /G cartoons
> show /H cartoons
> show cartoons
> close session
> open 2ac0
Summary of feedback from opening 2ac0 fetched from pdb
---
note | Fetching compressed mmCIF 2ac0 from http://files.rcsb.org/download/2ac0.cif
2ac0 title:
Structural Basis of DNA Recognition by p53 Tetramers (complex I) [more
info...]
Chain information for 2ac0 #1
---
Chain | Description | UniProt
A B C D | Cellular tumor antigen p53 | P53_HUMAN 94-293
E F G H | 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3' |
Non-standard residues in 2ac0 #1
---
ZN — zinc ion
37 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> hide /a-h atoms
> show /a-h cartoons
> color white /a-d
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color /a-d white
> color /e-h gray
> select #1/A,B,C,D:94-293
6180 atoms, 6320 bonds, 790 residues, 1 model selected
> select none
Expected an objects specifier or a keyword
> select none
Expected an objects specifier or a keyword
> unselect
Unknown command: unselect
> select
8210 atoms, 7408 bonds, 78 pseudobonds, 1896 residues, 3 models selected
> select clear
> color name materialidad #4B786C
Color 'materialidad' is opaque: rgb(29.4%, 47.1%, 42.4%) hex: #4b786c
> color delete materialidad
> color name forest #2B8231
Color 'forest' is opaque: rgb(16.9%, 51%, 19.2%) hex: #2b8231
> color name purple #A03E9A
Can not override builtin color
> color name purpl #A03E9A
Color 'purpl' is opaque: rgb(62.7%, 24.3%, 60.4%) hex: #a03e9a
> color name orang FF7D17
Missing or invalid "color" argument: Invalid color name or specifier
> color name orang #FF7D17
Color 'orang' is opaque: rgb(100%, 49%, 9.02%) hex: #ff7d17
> view clip false
Alignment identifier is 1
Alignment identifier is 2
> select /A-B:94
12 atoms, 10 bonds, 2 residues, 1 model selected
> select /A:94-292/B:94-291/C:96-290/D:96-293
6180 atoms, 6320 bonds, 790 residues, 1 model selected
> select /A-D:193
40 atoms, 40 bonds, 4 residues, 1 model selected
> select /A-D:193
40 atoms, 40 bonds, 4 residues, 1 model selected
> select /D:293
2 atoms, 1 bond, 1 residue, 1 model selected
> select /A:94-292/B:94-291/C:96-290/D:96-293
6180 atoms, 6320 bonds, 790 residues, 1 model selected
> select clear
> color
> /a-d:254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105
> forest
> color
> /a-d:109,110,111,113,120,125,126,131,138,141,152,154,155,159,163,175,178,179,180,190,193,195,196,197,216,218,219,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,273,276,277,279,280,282,286,290,292,325,334,337,344,347,35,72
> gray
> color /a-d:220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134
> purpl
> color /a-d:orang
> show sticks
> a-d:109,110,111,113,120,125,126,131,138,141,152,154,155,159,163,175,178,179,180,190,193,195,196,197,216,218,219,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,273,276,277,279,280,282,286,290,292,325,334,337,344,347,35,72,254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show atoms
> /a-d:109,110,111,113,120,125,126,131,138,141,152,154,155,159,163,175,178,179,180,190,193,195,196,197,216,218,219,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,273,276,277,279,280,282,286,290,292,325,334,337,344,347,35,72,254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
Expected ',' or a keyword
> show
> /a-d:109,110,111,113,120,125,126,131,138,141,152,154,155,159,163,175,178,179,180,190,193,195,196,197,216,218,219,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,273,276,277,279,280,282,286,290,292,325,334,337,344,347,35,72,254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
> atoms
> style stick
Changed 8210 atom styles
> hide all atoms
> show
> /a-d:109,110,111,113,120,125,126,131,138,141,152,154,155,159,163,175,178,179,180,190,193,195,196,197,216,218,219,229,232,236,237,238,239,240,243,249,250,256,259,265,267,270,271,272,273,276,277,279,280,282,286,290,292,325,334,337,344,347,35,72,254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
> atoms
> hide all atoms
>
> 254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
Unknown command:
254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
> show
> /a-d:254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
> atoms
> view clip false
> save "D:/My Drive/team-prime-
> editing/Manuscript/Chimera/p53_chimera_sesh.cxs"
> hide /d
> hide /g
> hide /h
> hide cartoons /h
Expected ',' or a keyword
> hide /h cartoons
> show /h cartoons
> hide /e cartoons
> hide /f cartoons
> hide /c all
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide /c
> show atoms
> /c:254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
Expected ',' or a keyword
> hide /d all
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide /d
> hide /b
> hide /b cartoons
> hide /a cartoons
> hide /a atoms
> show
> /d:254,257,251,143,248,194,246,266,215,244,242,255,281,285,245,241,105,220,135,161,215,130,189,234,151,127,156,342,136,143,258,278,134,143,215
> atoms
> lighting full
[Repeated 1 time(s)]
> save "C:\Users\Marcus Kelly/Desktop\image1.png" supersample 3
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting flat
> lighting full
> snapshot D:\My Drive\team-prime-
> editing\Manuscript\figures_and_assets\p53_dimer.png 4
Expected a keyword
> snapshot D:\My Drive\team-prime-
> editing\Manuscript\figures_and_assets\p53_dimer.png supersample 3
Expected a keyword
> save D:\My "Drive\\\team-prime-
> editing\\\Manuscript\\\figures_and_assets\\\p53_dimer.png" supersample 3
Cannot determine format for 'D:\My'
> save D:\My\ "Drive\\\team-prime-
> editing\\\Manuscript\\\figures_and_assets\\\p53_dimer.png" supersample 3
Cannot determine format for 'D:\My\'
> save D:/My\ Drive/team-prime-
> editing/Manuscript/figures_and_assets/p53_dimer.png supersample 3
Cannot determine format for 'D:/My\'
> save D:/My\\\ Drive/team-prime-
> editing/Manuscript/figures_and_assets/p53_dimer.png supersample 3
Cannot determine format for 'D:/My\\\'
> save "D:/My Drive/team-prime-
> editing/Manuscript/figures_and_assets/p53_dimer.png" supersample 3
> save
Missing or invalid "fileName" argument: Expected a file name
> save "D:/My Drive/team-prime-
> editing/Manuscript/Chimera/p53_chimera_sesh.cxs"
> close session
> open 7JVX
Summary of feedback from opening 7JVX fetched from pdb
---
notes | Fetching compressed mmCIF 7jvx from http://files.rcsb.org/download/7jvx.cif
Fetching CCD PO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/PO4/PO4.cif
7jvx title:
Crystal structure of PTEN (aa 7-353 followed by spacer TGGGSGGTGGGSGGTGGGCY
ligated to peptide pSDpTpTDpSDPENEPFDED) [more info...]
Chain information for 7jvx #1
---
Chain | Description | UniProt
A | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN | PTEN_HUMAN 1-422
Non-standard residues in 7jvx #1
---
PO4 — phosphate ion
> color /a white
> ui mousemode right select
> select clear
[Repeated 1 time(s)]
> color /a:92,136,167,38,13 forestgreen
> color /a:101,124,251,127,47,93,170,159,136,44 purple
> color /a:136 orange
> color
> /a:105,108,119,123,126,128,129,131,132,133,135,155,165,166,173,175,193,20,204,217,234,277,33,341,342,345,35,48,71,95,96,98
> gray
> show /a:92,136,167,38,13,101,124,251,127,47,93,170,159,136,44,136 atoms
> select /A:167
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:92@CG
1 atom, 1 residue, 1 model selected
> select /A:38
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:13
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:136
6 atoms, 5 bonds, 1 residue, 1 model selected
> ui mousemode right label
> label #1/A:343
> label delete residues
> 2dlabels delete
> label delete
> select up
122 atoms, 123 bonds, 16 residues, 1 model selected
> select up
2309 atoms, 2377 bonds, 276 residues, 1 model selected
> select up
2330 atoms, 2398 bonds, 278 residues, 1 model selected
> select down
2309 atoms, 2377 bonds, 276 residues, 1 model selected
> select down
122 atoms, 123 bonds, 16 residues, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> save "D:/My Drive/team-prime-
> editing/Manuscript/Chimera/pten_chimera_sesh.cxs"
——— End of log from Mon Jun 30 20:20:41 2025 ———
> view name session-start
opened ChimeraX session
> Shell
Unknown command: Shell
> shell
Unknown command: shell
> toolshed show
> ui tool show Shell
0.01s - Debugger warning: It seems that frozen modules are being used, which
may
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off
0.00s - to python to disable frozen modules.
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to
disable this validation.
> open "G:/My Drive/team-prime-
> editing/Manuscript/Chimera/p53_chimera_sesh.cxs"
Unable to restore session, resetting.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\session.py", line 845, in restore
data = fdeserialize(stream)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\core\serialize.py", line 81, in msgpack_deserialize
return next(stream)
^^^^^^^^^^^^
File "msgpack\\\\_unpacker.pyx", line 540, in
msgpack._cmsgpack.Unpacker.__next__
File "msgpack\\\\_unpacker.pyx", line 474, in
msgpack._cmsgpack.Unpacker._unpack
File "msgpack\\\\_unpacker.pyx", line 448, in
msgpack._cmsgpack.Unpacker.read_from_file
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\lz4\frame\\__init__.py", line 668, in read
return self._buffer.read(size)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\\_compression.py", line 68, in
readinto
data = self.read(len(byte_view))
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\\_compression.py", line 91, in
read
data = self._decompressor.decompress(rawblock, size)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\lz4\frame\\__init__.py", line 414, in decompress
decompressed, bytes_read, eoframe = decompress_chunk(
^^^^^^^^^^^^^^^^^
RuntimeError: LZ4F_decompress failed with code: ERROR_frameType_unknown
> view name session-start
opened ChimeraX session
OpenGL version: 3.3.0 - Build 32.0.101.6733
OpenGL renderer: Intel(R) Graphics
OpenGL vendor: Intel
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: Dell Inc.
Model: Latitude 5550
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 68,137,205,760
MaxProcessMemory: 137,438,953,344
CPU: 14 Intel(R) Core(TM) Ultra 7 165U
OSLanguage: en-US
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2025.6.15
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
nvidia-cuda-cupti-cu12: 12.9.79
nvidia-cuda-nvcc-cu12: 12.9.86
nvidia-cuda-nvrtc-cu12: 12.9.86
nvidia-cuda-runtime-cu12: 12.9.79
nvidia-cufft-cu12: 11.4.1.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
File attachment: p53_chimera_sesh.cxs
p53_chimera_sesh.cxs
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