Opened 3 months ago

Closed 3 months ago

#18199 closed defect (fixed)

Crash in glBufferSubData, and error opening stack of 2D TIFF images

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-15.5-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error

Thread 0x00000003470af000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x00000003460a3000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000345097000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000034408b000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000034307f000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000342073000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000341067000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000034005b000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033f04f000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033e043000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033d037000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033c02b000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033b01f000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000033a013000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000339007000 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Current thread 0x00000001fc0a1f00 (most recent call first):
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 2831 in update_buffer_data
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1917 in update_buffers
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1929 in activate_bindings
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 818 in _draw_geometry
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 791 in draw_self
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 784 in draw
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1572 in _draw_multiple
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1559 in draw_opaque
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/drawing.py", line 1584 in draw_depth
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 1560 in use_shadow_map
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 631 in _compute_shadowmaps
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 227 in _draw_scene
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 188 in draw
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 84 in draw_new_frame
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 169 in update_graphics_now
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line 2256 in moved_marker_cb
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/map/histogram.py", line 416 in move_marker_cb
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line 2182 in _drag
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/map/volume_viewer.py", line 2185 in mouseReleaseEvent
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init
  File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imaging, PIL._imagingmath (total: 43)


{"app_name":"ChimeraX","timestamp":"2025-07-15 20:23:41.00 +0200","app_version":"1.10.0","slice_uuid":"9cf8124a-d876-34ad-b7ee-c011183ebc15","build_version":"1.10.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.5 (24F74)","roots_installed":0,"name":"ChimeraX","incident_id":"0D344B79-849C-45D3-BE44-17C039E54FB1"}
{
  "uptime" : 260000,
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "Mac14,5",
  "coalitionID" : 53149,
  "osVersion" : {
    "train" : "macOS 15.5",
    "build" : "24F74",
    "releaseType" : "User"
  },
  "captureTime" : "2025-07-15 20:23:31.7346 +0200",
  "codeSigningMonitor" : 1,
  "incident" : "0D344B79-849C-45D3-BE44-17C039E54FB1",
  "pid" : 47512,
  "translated" : false,
  "cpuType" : "ARM-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2025-07-15 16:13:00.0375 +0200",
  "procStartAbsTime" : 6182392153791,
  "procExitAbsTime" : 6394970048043,
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.10.0","CFBundleVersion":"1.10.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"A40349E2-9608-5CBE-9B54-10DE44833113","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "5D9A2C9B-53FF-17DA-7C57-36A74604BD84",
  "appleIntelligenceStatus" : {"state":"available"},
  "codeSigningID" : "edu.ucsf.cgl.ChimeraX",
  "codeSigningTeamID" : "LWV8X224YF",
  "codeSigningFlags" : 570491649,
  "codeSigningValidationCategory" : 6,
  "codeSigningTrustLevel" : 4294967295,
  "codeSigningAuxiliaryInfo" : 0,
  "instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
  "bootSessionUUID" : "D5EA63CB-602A-4413-B12D-5B289961F955",
  "wakeTime" : 6134,
  "sleepWakeUUID" : "DE279CED-5BBF-4A34-BA6C-DC06D8C5F297",
  "sip" : "enabled",
  "vmRegionInfo" : "0x11f204000 is in 0x11f204000-0x11f5f0000;  bytes after start: 0  bytes before end: 4112383\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      VM_ALLOCATE                 11f200000-11f204000    [   16K] rw-\/rwx SM=PRV  \n--->  __TEXT                      11f204000-11f5f0000    [ 4016K] r-x\/rwx SM=COW  \/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml\n      __DATA_CONST                11f5f0000-11f614000    [  144K] r--\/rwx SM=COW  \/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
  "exception" : {"codes":"0x0000000000000002, 0x000000011f204000","rawCodes":[2,4817174528],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x000000011f204000"},
  "termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":47512},
  "vmregioninfo" : "0x11f204000 is in 0x11f204000-0x11f5f0000;  bytes after start: 0  bytes before end: 4112383\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      VM_ALLOCATE                 11f200000-11f204000    [   16K] rw-\/rwx SM=PRV  \n--->  __TEXT                      11f204000-11f5f0000    [ 4016K] r-x\/rwx SM=COW  \/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml\n      __DATA_CONST                11f5f0000-11f614000    [  144K] r--\/rwx SM=COW  \/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
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===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/boud/Downloads/M3#1594/cranium and mandible
> Sarmientosaurus.ply"

Unrecognized file suffix '.ply'  

> open
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3309.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3310.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3311.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3312.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3313.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3314.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3315.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3316.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3317.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3318.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3319.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3320.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3321.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3322.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3323.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3324.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3325.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3326.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3327.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3328.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3329.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3330.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3331.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3332.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3333.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3334.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3335.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3336.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3337.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3338.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3339.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3340.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3341.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3342.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3343.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3344.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3224.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3225.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3226.tiff
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> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3188.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3189.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3190.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3191.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3192.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3193.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3194.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3195.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3196.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3197.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3198.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3199.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3200.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3201.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3202.tiff
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> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3210.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3211.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3212.tiff
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> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3000.tiff
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> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3021.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3022.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3023.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3024.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3025.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3026.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3027.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3028.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3029.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3030.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3031.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3032.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3033.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3034.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3035.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3036.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3037.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3038.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3039.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3040.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3041.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3042.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3043.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3044.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3045.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3046.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3047.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3048.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3049.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3050.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3051.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3052.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3053.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3054.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3055.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3056.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3057.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3058.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3059.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3060.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3061.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3062.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched3063.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2885.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2886.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2887.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2888.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2889.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2890.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2891.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2892.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2893.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2894.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2895.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2896.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2897.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2898.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2899.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2900.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2901.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2902.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2903.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2904.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2905.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2906.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2907.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2908.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2909.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2910.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2911.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2912.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2913.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2914.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2915.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2916.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2917.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2918.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2919.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2920.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2921.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2922.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2923.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2924.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2925.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2926.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2927.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2928.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2929.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2930.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2931.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2932.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2933.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2934.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2935.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2936.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2937.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2938.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2939.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2940.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2941.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2942.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2943.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2944.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2945.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2946.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2947.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2948.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2949.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2950.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2951.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2952.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2953.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2954.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2955.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2956.tiff
> /Users/boud/Downloads/Tri_127_pharate_pupa_late_stage_010_cropped_stiched/Tribolium_010_cropped_stiched2957.tiff

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/dialog.py", line 339, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 132, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 3221, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 193, in provider_open  
models, status = collated_open(session, None, paths, data_format, _add_models,
log_errors,  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 526, in collated_open  
return remember_data_format()  
^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/open_command/cmd.py", line 497, in remember_data_format  
models, status = func(*func_args, **func_kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/__init__.py", line 183, in open  
return open_map(session, path, format=_name, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map/volume.py", line 3607, in open_map  
grids = open_file(path, file_type = format, log = session.logger, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/fileformats.py", line 171, in open_file  
data = open_func(apath, **okw)  
^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/imagestack/__init__.py", line 25, in open  
grids.extend(open_stack(path_list, t, c, log=log))  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/imagestack/__init__.py", line 64, in open_stack  
if tiff_type == 'ImageJ':  
^^^^^^^^^  
UnboundLocalError: cannot access local variable 'tiff_type' where it is not
associated with a value  
  
UnboundLocalError: cannot access local variable 'tiff_type' where it is not
associated with a value  
  
File
"/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/map_data/imagestack/__init__.py", line 64, in open_stack  
if tiff_type == 'ImageJ':  
^^^^^^^^^  
  
See log for complete Python traceback.  
  

> open /Users/boud/Downloads/antscan_processed_GAGA_5x_GAGA-04-07.tif

Opened antscan_processed_GAGA_5x_GAGA-04-07.tif as #1, grid size
1926,1542,1728, pixel 1, shown at step 1, values uint8  

> show cartoons

> hide cartoons

> style stick

Changed 0 atom styles  

> style sphere

Changed 0 atom styles  

> style sphere

Changed 0 atom styles  

> style ball

Changed 0 atom styles  

> show atoms

> hide atoms

> volume #1 level 71.99,0 level 177,0.8 level 255,1

> volume #1 level 71.99,0 level 141.7,0.7941 level 255,1

> volume #1 step 16

> volume #1 step 1

> volume #1 region 0,0,0,1925,1541,1727 step 16

> volume #1 step 1

> volume #1 step 4

> lighting simple

> set bgColor white

> set bgColor #ffffff00

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting soft

> lighting full

> style stick

Changed 0 atom styles  

> style sphere

Changed 0 atom styles  

> style ball

Changed 0 atom styles  

> show cartoons

> hide cartoons

> show atoms

> hide atoms

> volume #1 style image

> volume #1 level 71.99,0 level 124.8,0.9706 level 255,1

> volume #1 level 71.99,0 level 54.75,0.9559 level 255,1

> volume #1 level 71.99,1 level 54.75,0.9559 level 255,1

> volume #1 level 71.99,1 level 54.75,0 level 255,1

> volume #1 level 97.63,0.4559 level 54.75,0 level 255,1

> volume #1 level 88.93,0.6618 level 54.75,0 level 255,1

> volume #1 style surface

> volume #1 step 2

> volume #1 step 1

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting full

> volume #1 level 132.4


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.10 (2025-06-26)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,5
      Model Number: Z17H001PJLL/A
      Chip: Apple M2 Max
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 64 GB
      System Firmware Version: 11881.121.1
      OS Loader Version: 11881.121.1

Software:

    System Software Overview:

      System Version: macOS 15.5 (24F74)
      Kernel Version: Darwin 24.5.0
      Time since boot: 8 days, 14 hours, 11 minutes

Graphics/Displays:

    Apple M2 Max:

      Chipset Model: Apple M2 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 38
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal


Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.5.0
    build: 1.2.2.post1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.18
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.2
    coverage: 7.9.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.14
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.58.4
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.4.4
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.32
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14

Change History (3)

comment:1 by pett, 3 months ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash in glBufferSubData

comment:2 by Tom Goddard, 3 months ago

Tried to show a surface of a very large 5 Gbyte map 1926,1542,1728 8-bit after showing volume rendering at full resolution successfully. Probably ran out of memory resulting in a graphics driver crash in glBufferSubData().

This ticket has an earlier traceback trying to read a stack of tiff images.

comment:3 by Tom Goddard, 3 months ago

Resolution: → fixed
Status: assigned → closed
Summary: Crash in glBufferSubData → Crash in glBufferSubData, and error opening stack of 2D TIFF images

Fixed opening stack of 2D tiff images in ChimeraX 1.10.1 and 1.11 daily build.

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