Opened 4 months ago

Closed 4 months ago

#18106 closed defect (duplicate)

Crash in garbage collection

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.14.0-570.23.1.el9_6.x86_64-x86_64-with-glibc2.34
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Thread 0x00007f74ca3b4640 (most recent call first):
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/threading.py", line 324 in wait
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/threading.py", line 622 in wait
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/threading.py", line 1392 in run
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/threading.py", line 995 in _bootstrap

Current thread 0x00007f75eea72b80 (most recent call first):
  Garbage-collecting
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in 
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in __iter__
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/coulombic/cmd.py", line 88 in cmd_coulombic
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 319 in execute
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 146 in keyPressEvent
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 193 in 
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 307 in forward_keystroke
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 2259 in _forward_keystroke
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
  File "/usr/libexec/UCSF-ChimeraX/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 57)
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /old-home/euribe/EM/ssip-1/20241114_rsr38-iauH.pdb

Summary of feedback from opening /old-
home/euribe/EM/ssip-1/20241114_rsr38-iauH.pdb  
---  
warnings | Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
72047 messages similar to the above omitted  
  
Chain information for 20241114_rsr38-iauH.pdb #1  
---  
Chain | Description  
45 C D H J K L P | No description available  
46 d e g h i j k l m n o p q s t u | No description available  
A F Q | No description available  
E | No description available  
G I M N O R S T U | No description available  
V W X | No description available  
Y | No description available  
a c f r | No description available  
  

> coulombic #1

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
/45 ARG 2  
/45 TYR 10  
/45 ARG 23  
/45 ARG 27  
/45 ARG 29  
/45 ARG 32  
/45 ARG 56  
/45 ARG 61  
/45 TYR 63  
/45 TYR 70  
/45 ARG 73  
/45 ARG 75  
/45 ARG 82  
/45 ARG 112  
/45 ARG 121  
/45 TYR 122  
/45 ARG 161  
/45 ARG 175  
/45 TRP 194  
/46 TYR 5  
/46 ARG 10  
/46 ARG 26  
/46 TYR 58  
/46 ARG 60  
/46 ARG 65  
/46 ARG 67  
/46 TYR 69  
/46 ARG 106  
/46 TYR 133  
/46 ARG 149  
/46 ARG 160  
/46 TRP 173  
/46 TRP 191  
/46 ARG 210  
/A ARG 2  
/A TYR 10  
/A ARG 23  
/A ARG 27  
/A ARG 29  
/A ARG 32  
/A ARG 56  
/A ARG 61  
/A TYR 63  
/A TYR 70  
/A ARG 73  
/A ARG 75  
/A ARG 82  
/A ARG 112  
/A ARG 121  
/A TYR 122  
/A ARG 161  
/A ARG 175  
/A TRP 194  
/C ARG 2  
/C TYR 10  
/C ARG 23  
/C ARG 27  
/C ARG 29  
/C ARG 32  
/C ARG 56  
/C ARG 61  
/C TYR 63  
/C TYR 70  
/C ARG 73  
/C ARG 75  
/C ARG 82  
/C ARG 112  
/C ARG 121  
/C TYR 122  
/C ARG 161  
/C ARG 175  
/C TRP 194  
/D ARG 2  
/D TYR 10  
/D ARG 23  
/D ARG 27  
/D ARG 29  
/D ARG 32  
/D ARG 56  
/D ARG 61  
/D TYR 63  
/D TYR 70  
/D ARG 73  
/D ARG 75  
/D ARG 82  
/D ARG 112  
/D ARG 121  
/D TYR 122  
/D ARG 161  
/D ARG 175  
/D TRP 194  
/E ARG 2  
/E TYR 10  
/E ARG 23  
/E ARG 27  
/E ARG 29  
/E ARG 32  
/E ARG 56  
/E ARG 61  
/E TYR 63  
/E TYR 70  
/E ARG 73  
/E ARG 75  
/E ARG 82  
/E ARG 112  
/E ARG 121  
/E TYR 122  
/E ARG 161  
/E ARG 175  
/E TRP 194  
/F ARG 2  
/F TYR 10  
/F ARG 23  
/F ARG 27  
/F ARG 29  
/F ARG 32  
/F ARG 56  
/F ARG 61  
/F TYR 63  
/F TYR 70  
/F ARG 73  
/F ARG 75  
/F ARG 82  
/F ARG 112  
/F ARG 121  
/F TYR 122  
/F ARG 161  
/F ARG 175  
/F TRP 194  
/G ARG 2  
/G TYR 10  
/G ARG 23  
/G ARG 27  
/G ARG 29  
/G ARG 32  
/G ARG 56  
/G ARG 61  
/G TYR 63  
/G TYR 70  
/G ARG 73  
/G ARG 75  
/G ARG 82  
/G ARG 112  
/G ARG 121  
/G TYR 122  
/G ARG 161  
/G ARG 175  
/G TRP 194  
/H ARG 2  
/H TYR 10  
/H ARG 23  
/H ARG 27  
/H ARG 29  
/H ARG 32  
/H ARG 56  
/H ARG 61  
/H TYR 63  
/H TYR 70  
/H ARG 73  
/H ARG 75  
/H ARG 82  
/H ARG 112  
/H ARG 121  
/H TYR 122  
/H ARG 161  
/H ARG 175  
/H TRP 194  
/I ARG 2  
/I TYR 10  
/I ARG 23  
/I ARG 27  
/I ARG 29  
/I ARG 32  
/I ARG 56  
/I ARG 61  
/I TYR 63  
/I TYR 70  
/I ARG 73  
/I ARG 75  
/I ARG 82  
/I ARG 112  
/I ARG 121  
/I TYR 122  
/I ARG 161  
/I ARG 175  
/I TRP 194  
/J ARG 2  
/J TYR 10  
/J ARG 23  
/J ARG 27  
/J ARG 29  
/J ARG 32  
/J ARG 56  
/J ARG 61  
/J TYR 63  
/J TYR 70  
/J ARG 73  
/J ARG 75  
/J ARG 82  
/J ARG 112  
/J ARG 121  
/J TYR 122  
/J ARG 161  
/J ARG 175  
/J TRP 194  
/K ARG 2  
/K TYR 10  
/K ARG 23  
/K ARG 27  
/K ARG 29  
/K ARG 32  
/K ARG 56  
/K ARG 61  
/K TYR 63  
/K TYR 70  
/K ARG 73  
/K ARG 75  
/K ARG 82  
/K ARG 112  
/K ARG 121  
/K TYR 122  
/K ARG 161  
/K ARG 175  
/K TRP 194  
/L ARG 2  
/L TYR 10  
/L ARG 23  
/L ARG 27  
/L ARG 29  
/L ARG 32  
/L ARG 56  
/L ARG 61  
/L TYR 63  
/L TYR 70  
/L ARG 73  
/L ARG 75  
/L ARG 82  
/L ARG 112  
/L ARG 121  
/L TYR 122  
/L ARG 161  
/L ARG 175  
/L TRP 194  
/M ARG 2  
/M TYR 10  
/M ARG 23  
/M ARG 27  
/M ARG 29  
/M ARG 32  
/M ARG 56  
/M ARG 61  
/M TYR 63  
/M TYR 70  
/M ARG 73  
/M ARG 75  
/M ARG 82  
/M ARG 112  
/M ARG 121  
/M TYR 122  
/M ARG 161  
/M ARG 175  
/M TRP 194  
/N ARG 2  
/N TYR 10  
/N ARG 23  
/N ARG 27  
/N ARG 29  
/N ARG 32  
/N ARG 56  
/N ARG 61  
/N TYR 63  
/N TYR 70  
/N ARG 73  
/N ARG 75  
/N ARG 82  
/N ARG 112  
/N ARG 121  
/N TYR 122  
/N ARG 161  
/N ARG 175  
/N TRP 194  
/O ARG 2  
/O TYR 10  
/O ARG 23  
/O ARG 27  
/O ARG 29  
/O ARG 32  
/O ARG 56  
/O ARG 61  
/O TYR 63  
/O TYR 70  
/O ARG 73  
/O ARG 75  
/O ARG 82  
/O ARG 112  
/O ARG 121  
/O TYR 122  
/O ARG 161  
/O ARG 175  
/O TRP 194  
/P ARG 2  
/P TYR 10  
/P ARG 23  
/P ARG 27  
/P ARG 29  
/P ARG 32  
/P ARG 56  
/P ARG 61  
/P TYR 63  
/P TYR 70  
/P ARG 73  
/P ARG 75  
/P ARG 82  
/P ARG 112  
/P ARG 121  
/P TYR 122  
/P ARG 161  
/P ARG 175  
/P TRP 194  
/Q ARG 2  
/Q TYR 10  
/Q ARG 23  
/Q ARG 27  
/Q ARG 29  
/Q ARG 32  
/Q ARG 56  
/Q ARG 61  
/Q TYR 63  
/Q TYR 70  
/Q ARG 73  
/Q ARG 75  
/Q ARG 82  
/Q ARG 112  
/Q ARG 121  
/Q TYR 122  
/Q ARG 161  
/Q ARG 175  
/Q TRP 194  
/R ARG 2  
/R TYR 10  
/R ARG 23  
/R ARG 27  
/R ARG 29  
/R ARG 32  
/R ARG 56  
/R ARG 61  
/R TYR 63  
/R TYR 70  
/R ARG 73  
/R ARG 75  
/R ARG 82  
/R ARG 112  
/R ARG 121  
/R TYR 122  
/R ARG 161  
/R ARG 175  
/R TRP 194  
/S ARG 2  
/S TYR 10  
/S ARG 23  
/S ARG 27  
/S ARG 29  
/S ARG 32  
/S ARG 56  
/S ARG 61  
/S TYR 63  
/S TYR 70  
/S ARG 73  
/S ARG 75  
/S ARG 82  
/S ARG 112  
/S ARG 121  
/S TYR 122  
/S ARG 161  
/S ARG 175  
/S TRP 194  
/T ARG 2  
/T TYR 10  
/T ARG 23  
/T ARG 27  
/T ARG 29  
/T ARG 32  
/T ARG 56  
/T ARG 61  
/T TYR 63  
/T TYR 70  
/T ARG 73  
/T ARG 75  
/T ARG 82  
/T ARG 112  
/T ARG 121  
/T TYR 122  
/T ARG 161  
/T ARG 175  
/T TRP 194  
/U ARG 2  
/U TYR 10  
/U ARG 23  
/U ARG 27  
/U ARG 29  
/U ARG 32  
/U ARG 56  
/U ARG 61  
/U TYR 63  
/U TYR 70  
/U ARG 73  
/U ARG 75  
/U ARG 82  
/U ARG 112  
/U ARG 121  
/U TYR 122  
/U ARG 161  
/U ARG 175  
/U TRP 194  
/V TYR 14  
/V TYR 33  
/V ARG 39  
/V ARG 44  
/V ARG 56  
/V ARG 79  
/V TYR 84  
/V ARG 127  
/V ARG 132  
/V ARG 137  
/V TYR 145  
/V TRP 168  
/V ARG 172  
/V ARG 185  
/V ARG 190  
/V ARG 200  
/V ARG 208  
/V TYR 221  
/V TYR 255  
/W TYR 14  
/W TYR 33  
/W ARG 39  
/W ARG 44  
/W ARG 56  
/W ARG 79  
/W TYR 84  
/W ARG 127  
/W ARG 132  
/W ARG 137  
/W TYR 145  
/W TRP 168  
/W ARG 172  
/W ARG 185  
/W ARG 190  
/W ARG 200  
/W ARG 208  
/W TYR 221  
/W TYR 255  
/X TYR 14  
/X TYR 33  
/X ARG 39  
/X ARG 44  
/X ARG 56  
/X ARG 79  
/X TYR 84  
/X ARG 127  
/X ARG 132  
/X ARG 137  
/X TYR 145  
/X TRP 168  
/X ARG 172  
/X ARG 185  
/X ARG 190  
/X ARG 200  
/X ARG 208  
/X TYR 221  
/X TYR 255  
/Y TYR 6  
/Y TYR 9  
/Y ARG 11  
/Y ARG 13  
/Y ARG 27  
/Y ARG 36  
/Y TRP 44  
/Y ARG 45  
/Y TYR 59  
/Y ARG 61  
/Y TYR 62  
/Y TYR 72  
/Y TYR 84  
/Y TRP 113  
/Y TYR 115  
/Y ARG 123  
/Y ARG 124  
/Y ARG 127  
/a TYR 5  
/a ARG 10  
/a ARG 26  
/a TYR 58  
/a ARG 60  
/a ARG 65  
/a ARG 67  
/a TYR 69  
/a ARG 106  
/a TYR 133  
/a ARG 149  
/a ARG 160  
/a TRP 173  
/a TRP 191  
/a ARG 210  
/c TYR 5  
/c ARG 10  
/c ARG 26  
/c TYR 58  
/c ARG 60  
/c ARG 65  
/c ARG 67  
/c TYR 69  
/c ARG 106  
/c TYR 133  
/c ARG 149  
/c ARG 160  
/c TRP 173  
/c TRP 191  
/c ARG 210  
/d TYR 5  
/d ARG 10  
/d ARG 26  
/d TYR 58  
/d ARG 60  
/d ARG 65  
/d ARG 67  
/d TYR 69  
/d ARG 106  
/d TYR 133  
/d ARG 149  
/d ARG 160  
/d TRP 173  
/d TRP 191  
/d ARG 210  
/e TYR 5  
/e ARG 10  
/e ARG 26  
/e TYR 58  
/e ARG 60  
/e ARG 65  
/e ARG 67  
/e TYR 69  
/e ARG 106  
/e TYR 133  
/e ARG 149  
/e ARG 160  
/e TRP 173  
/e TRP 191  
/e ARG 210  
/f TYR 5  
/f ARG 10  
/f ARG 26  
/f TYR 58  
/f ARG 60  
/f ARG 65  
/f ARG 67  
/f TYR 69  
/f ARG 106  
/f TYR 133  
/f ARG 149  
/f ARG 160  
/f TRP 173  
/f TRP 191  
/f ARG 210  
/g TYR 5  
/g ARG 10  
/g ARG 26  
/g TYR 58  
/g ARG 60  
/g ARG 65  
/g ARG 67  
/g TYR 69  
/g ARG 106  
/g TYR 133  
/g ARG 149  
/g ARG 160  
/g TRP 173  
/g TRP 191  
/g ARG 210  
/h TYR 5  
/h ARG 10  
/h ARG 26  
/h TYR 58  
/h ARG 60  
/h ARG 65  
/h ARG 67  
/h TYR 69  
/h ARG 106  
/h TYR 133  
/h ARG 149  
/h ARG 160  
/h TRP 173  
/h TRP 191  
/h ARG 210  
/i TYR 5  
/i ARG 10  
/i ARG 26  
/i TYR 58  
/i ARG 60  
/i ARG 65  
/i ARG 67  
/i TYR 69  
/i ARG 106  
/i TYR 133  
/i ARG 149  
/i ARG 160  
/i TRP 173  
/i TRP 191  
/i ARG 210  
/j TYR 5  
/j ARG 10  
/j ARG 26  
/j TYR 58  
/j ARG 60  
/j ARG 65  
/j ARG 67  
/j TYR 69  
/j ARG 106  
/j TYR 133  
/j ARG 149  
/j ARG 160  
/j TRP 173  
/j TRP 191  
/j ARG 210  
/k TYR 5  
/k ARG 10  
/k ARG 26  
/k TYR 58  
/k ARG 60  
/k ARG 65  
/k ARG 67  
/k TYR 69  
/k ARG 106  
/k TYR 133  
/k ARG 149  
/k ARG 160  
/k TRP 173  
/k TRP 191  
/k ARG 210  
/l TYR 5  
/l ARG 10  
/l ARG 26  
/l TYR 58  
/l ARG 60  
/l ARG 65  
/l ARG 67  
/l TYR 69  
/l ARG 106  
/l TYR 133  
/l ARG 149  
/l ARG 160  
/l TRP 173  
/l TRP 191  
/l ARG 210  
/m TYR 5  
/m ARG 10  
/m ARG 26  
/m TYR 58  
/m ARG 60  
/m ARG 65  
/m ARG 67  
/m TYR 69  
/m ARG 106  
/m TYR 133  
/m ARG 149  
/m ARG 160  
/m TRP 173  
/m TRP 191  
/m ARG 210  
/n TYR 5  
/n ARG 10  
/n ARG 26  
/n TYR 58  
/n ARG 60  
/n ARG 65  
/n ARG 67  
/n TYR 69  
/n ARG 106  
/n TYR 133  
/n ARG 149  
/n ARG 160  
/n TRP 173  
/n TRP 191  
/n ARG 210  
/o TYR 5  
/o ARG 10  
/o ARG 26  
/o TYR 58  
/o ARG 60  
/o ARG 65  
/o ARG 67  
/o TYR 69  
/o ARG 106  
/o TYR 133  
/o ARG 149  
/o ARG 160  
/o TRP 173  
/o TRP 191  
/o ARG 210  
/p TYR 5  
/p ARG 10  
/p ARG 26  
/p TYR 58  
/p ARG 60  
/p ARG 65  
/p ARG 67  
/p TYR 69  
/p ARG 106  
/p TYR 133  
/p ARG 149  
/p ARG 160  
/p TRP 173  
/p TRP 191  
/p ARG 210  
/q TYR 5  
/q ARG 10  
/q ARG 26  
/q TYR 58  
/q ARG 60  
/q ARG 65  
/q ARG 67  
/q TYR 69  
/q ARG 106  
/q TYR 133  
/q ARG 149  
/q ARG 160  
/q TRP 173  
/q TRP 191  
/q ARG 210  
/r TYR 5  
/r ARG 10  
/r ARG 26  
/r TYR 58  
/r ARG 60  
/r ARG 65  
/r ARG 67  
/r TYR 69  
/r ARG 106  
/r TYR 133  
/r ARG 149  
/r ARG 160  
/r TRP 173  
/r TRP 191  
/r ARG 210  
/s TYR 5  
/s ARG 10  
/s ARG 26  
/s TYR 58  
/s ARG 60  
/s ARG 65  
/s ARG 67  
/s TYR 69  
/s ARG 106  
/s TYR 133  
/s ARG 149  
/s ARG 160  
/s TRP 173  
/s TRP 191  
/s ARG 210  
/t TYR 5  
/t ARG 10  
/t ARG 26  
/t TYR 58  
/t ARG 60  
/t ARG 65  
/t ARG 67  
/t TYR 69  
/t ARG 106  
/t TYR 133  
/t ARG 149  
/t ARG 160  
/t TRP 173  
/t TRP 191  
/t ARG 210  
/u TYR 5  
/u ARG 10  
/u ARG 26  
/u TYR 58  
/u ARG 60  
/u ARG 65  
/u ARG 67  
/u TYR 69  
/u ARG 106  
/u TYR 133  
/u ARG 149  
/u ARG 160  
/u TRP 173  
/u TRP 191  
/u ARG 210  

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 20241114_rsr38-iauH.pdb_45 SES surface #1.1: minimum,
-17.22, mean 0.60, maximum 18.16  
Coulombic values for 20241114_rsr38-iauH.pdb_46 SES surface #1.2: minimum,
-23.08, mean -3.08, maximum 14.98  
Coulombic values for 20241114_rsr38-iauH.pdb_A SES surface #1.3: minimum,
-16.66, mean 0.47, maximum 26.41  
Coulombic values for 20241114_rsr38-iauH.pdb_C SES surface #1.4: minimum,
-20.62, mean 0.38, maximum 16.25  
Coulombic values for 20241114_rsr38-iauH.pdb_D SES surface #1.5: minimum,
-17.11, mean 0.35, maximum 23.85  
Coulombic values for 20241114_rsr38-iauH.pdb_E SES surface #1.6: minimum,
-17.14, mean 0.34, maximum 17.79  
Coulombic values for 20241114_rsr38-iauH.pdb_F SES surface #1.7: minimum,
-16.80, mean 0.73, maximum 16.51  
Coulombic values for 20241114_rsr38-iauH.pdb_G SES surface #1.8: minimum,
-17.43, mean 0.37, maximum 16.26  
Coulombic values for 20241114_rsr38-iauH.pdb_H SES surface #1.9: minimum,
-16.80, mean 0.61, maximum 17.36  
Coulombic values for 20241114_rsr38-iauH.pdb_I SES surface #1.10: minimum,
-16.87, mean 0.63, maximum 22.05  
Coulombic values for 20241114_rsr38-iauH.pdb_J SES surface #1.11: minimum,
-17.31, mean 0.67, maximum 16.08  
Coulombic values for 20241114_rsr38-iauH.pdb_K SES surface #1.12: minimum,
-16.84, mean 0.45, maximum 24.10  
Coulombic values for 20241114_rsr38-iauH.pdb_L SES surface #1.13: minimum,
-16.24, mean 0.67, maximum 16.34  
Coulombic values for 20241114_rsr38-iauH.pdb_M SES surface #1.14: minimum,
-24.20, mean 0.02, maximum 16.55  
Coulombic values for 20241114_rsr38-iauH.pdb_N SES surface #1.15: minimum,
-17.75, mean 0.07, maximum 17.22  
Coulombic values for 20241114_rsr38-iauH.pdb_O SES surface #1.16: minimum,
-17.49, mean 0.34, maximum 16.52  
Coulombic values for 20241114_rsr38-iauH.pdb_P SES surface #1.17: minimum,
-18.22, mean 0.02, maximum 16.77  
Coulombic values for 20241114_rsr38-iauH.pdb_Q SES surface #1.18: minimum,
-17.31, mean 0.33, maximum 17.49  
Coulombic values for 20241114_rsr38-iauH.pdb_R SES surface #1.19: minimum,
-17.28, mean 0.25, maximum 24.62  
Coulombic values for 20241114_rsr38-iauH.pdb_S SES surface #1.20: minimum,
-16.82, mean 0.29, maximum 15.48  
Coulombic values for 20241114_rsr38-iauH.pdb_T SES surface #1.21: minimum,
-16.35, mean 0.41, maximum 16.10  
Coulombic values for 20241114_rsr38-iauH.pdb_U SES surface #1.22: minimum,
-17.32, mean 0.11, maximum 16.58  
Coulombic values for 20241114_rsr38-iauH.pdb_V SES surface #1.23: minimum,
-17.69, mean -1.05, maximum 13.98  
Coulombic values for 20241114_rsr38-iauH.pdb_W SES surface #1.24: minimum,
-21.57, mean -1.05, maximum 10.54  
Coulombic values for 20241114_rsr38-iauH.pdb_X SES surface #1.25: minimum,
-18.14, mean -0.98, maximum 10.89  
Coulombic values for 20241114_rsr38-iauH.pdb_Y SES surface #1.26: minimum,
-17.09, mean -2.39, maximum 9.90  
Coulombic values for 20241114_rsr38-iauH.pdb_a SES surface #1.27: minimum,
-21.04, mean -3.73, maximum 15.92  
Coulombic values for 20241114_rsr38-iauH.pdb_c SES surface #1.28: minimum,
-21.80, mean -3.64, maximum 17.46  
Coulombic values for 20241114_rsr38-iauH.pdb_d SES surface #1.29: minimum,
-21.81, mean -3.34, maximum 16.08  
Coulombic values for 20241114_rsr38-iauH.pdb_e SES surface #1.30: minimum,
-20.57, mean -3.17, maximum 17.91  
Coulombic values for 20241114_rsr38-iauH.pdb_f SES surface #1.31: minimum,
-22.57, mean -3.71, maximum 13.11  
Coulombic values for 20241114_rsr38-iauH.pdb_g SES surface #1.32: minimum,
-22.07, mean -3.49, maximum 17.00  
Coulombic values for 20241114_rsr38-iauH.pdb_h SES surface #1.33: minimum,
-24.06, mean -3.48, maximum 21.57  
Coulombic values for 20241114_rsr38-iauH.pdb_i SES surface #1.34: minimum,
-20.90, mean -3.54, maximum 17.29  
Coulombic values for 20241114_rsr38-iauH.pdb_j SES surface #1.35: minimum,
-21.20, mean -3.44, maximum 20.06  
Coulombic values for 20241114_rsr38-iauH.pdb_k SES surface #1.36: minimum,
-22.87, mean -3.53, maximum 14.65  
Coulombic values for 20241114_rsr38-iauH.pdb_l SES surface #1.37: minimum,
-27.71, mean -3.23, maximum 16.88  
Coulombic values for 20241114_rsr38-iauH.pdb_m SES surface #1.38: minimum,
-19.47, mean -3.47, maximum 18.67  
Coulombic values for 20241114_rsr38-iauH.pdb_n SES surface #1.39: minimum,
-30.90, mean -3.27, maximum 17.94  
Coulombic values for 20241114_rsr38-iauH.pdb_o SES surface #1.40: minimum,
-19.92, mean -3.31, maximum 10.95  
Coulombic values for 20241114_rsr38-iauH.pdb_p SES surface #1.41: minimum,
-19.63, mean -3.49, maximum 11.68  
Coulombic values for 20241114_rsr38-iauH.pdb_q SES surface #1.42: minimum,
-20.90, mean -3.44, maximum 12.92  
Coulombic values for 20241114_rsr38-iauH.pdb_r SES surface #1.43: minimum,
-24.12, mean -3.75, maximum 16.22  
Coulombic values for 20241114_rsr38-iauH.pdb_s SES surface #1.44: minimum,
-23.16, mean -3.47, maximum 11.73  
Coulombic values for 20241114_rsr38-iauH.pdb_t SES surface #1.45: minimum,
-21.19, mean -3.14, maximum 16.05  
Coulombic values for 20241114_rsr38-iauH.pdb_u SES surface #1.46: minimum,
-21.80, mean -3.45, maximum 17.71  

> set bgColor white

> save /old-
> home/euribe/EM/ssip-1/3-fold_pseudo3-fold/20250630_IAU_electrostaticsurf.png
> width 2532 height 1395 supersample 4 transparentBackground true

> save /old-
> home/euribe/EM/ssip-1/3-fold_pseudo3-fold/20250630_IAU_electrostaticsurf_180.png
> width 2532 height 1395 supersample 4 transparentBackground true

> open /old-home/euribe/EM/ssip-1/COM/20250312_IAU-facet2.pdb

Chain information for 20250312_IAU-facet2.pdb #2  
---  
Chain | Description  
A F Q | No description available  
B C D H J K L P | No description available  
E | No description available  
G I M N O R S T U | No description available  
a c f r | No description available  
b d e g h i j k l m n o p q s t u | No description available  
  

> coulombic #2

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
20250312_IAU-facet2.pdb #2/A ARG 2  
20250312_IAU-facet2.pdb #2/A TYR 10  
20250312_IAU-facet2.pdb #2/A ARG 23  
20250312_IAU-facet2.pdb #2/A ARG 27  
20250312_IAU-facet2.pdb #2/A ARG 29  
20250312_IAU-facet2.pdb #2/A ARG 32  
20250312_IAU-facet2.pdb #2/A ARG 56  
20250312_IAU-facet2.pdb #2/A ARG 61  
20250312_IAU-facet2.pdb #2/A TYR 63  
20250312_IAU-facet2.pdb #2/A TYR 70  
20250312_IAU-facet2.pdb #2/A ARG 73  
20250312_IAU-facet2.pdb #2/A ARG 75  
20250312_IAU-facet2.pdb #2/A ARG 82  
20250312_IAU-facet2.pdb #2/A ARG 112  
20250312_IAU-facet2.pdb #2/A ARG 121  
20250312_IAU-facet2.pdb #2/A TYR 122  
20250312_IAU-facet2.pdb #2/A ARG 161  
20250312_IAU-facet2.pdb #2/A ARG 175  
20250312_IAU-facet2.pdb #2/A TRP 194  
20250312_IAU-facet2.pdb #2/B ARG 2  
20250312_IAU-facet2.pdb #2/B TYR 10  
20250312_IAU-facet2.pdb #2/B ARG 23  
20250312_IAU-facet2.pdb #2/B ARG 27  
20250312_IAU-facet2.pdb #2/B ARG 29  
20250312_IAU-facet2.pdb #2/B ARG 32  
20250312_IAU-facet2.pdb #2/B ARG 56  
20250312_IAU-facet2.pdb #2/B ARG 61  
20250312_IAU-facet2.pdb #2/B TYR 63  
20250312_IAU-facet2.pdb #2/B TYR 70  
20250312_IAU-facet2.pdb #2/B ARG 73  
20250312_IAU-facet2.pdb #2/B ARG 75  
20250312_IAU-facet2.pdb #2/B ARG 82  
20250312_IAU-facet2.pdb #2/B ARG 112  
20250312_IAU-facet2.pdb #2/B ARG 121  
20250312_IAU-facet2.pdb #2/B TYR 122  
20250312_IAU-facet2.pdb #2/B ARG 161  
20250312_IAU-facet2.pdb #2/B ARG 175  
20250312_IAU-facet2.pdb #2/B TRP 194  
20250312_IAU-facet2.pdb #2/C ARG 2  
20250312_IAU-facet2.pdb #2/C TYR 10  
20250312_IAU-facet2.pdb #2/C ARG 23  
20250312_IAU-facet2.pdb #2/C ARG 27  
20250312_IAU-facet2.pdb #2/C ARG 29  
20250312_IAU-facet2.pdb #2/C ARG 32  
20250312_IAU-facet2.pdb #2/C ARG 56  
20250312_IAU-facet2.pdb #2/C ARG 61  
20250312_IAU-facet2.pdb #2/C TYR 63  
20250312_IAU-facet2.pdb #2/C TYR 70  
20250312_IAU-facet2.pdb #2/C ARG 73  
20250312_IAU-facet2.pdb #2/C ARG 75  
20250312_IAU-facet2.pdb #2/C ARG 82  
20250312_IAU-facet2.pdb #2/C ARG 112  
20250312_IAU-facet2.pdb #2/C ARG 121  
20250312_IAU-facet2.pdb #2/C TYR 122  
20250312_IAU-facet2.pdb #2/C ARG 161  
20250312_IAU-facet2.pdb #2/C ARG 175  
20250312_IAU-facet2.pdb #2/C TRP 194  
20250312_IAU-facet2.pdb #2/D ARG 2  
20250312_IAU-facet2.pdb #2/D TYR 10  
20250312_IAU-facet2.pdb #2/D ARG 23  
20250312_IAU-facet2.pdb #2/D ARG 27  
20250312_IAU-facet2.pdb #2/D ARG 29  
20250312_IAU-facet2.pdb #2/D ARG 32  
20250312_IAU-facet2.pdb #2/D ARG 56  
20250312_IAU-facet2.pdb #2/D ARG 61  
20250312_IAU-facet2.pdb #2/D TYR 63  
20250312_IAU-facet2.pdb #2/D TYR 70  
20250312_IAU-facet2.pdb #2/D ARG 73  
20250312_IAU-facet2.pdb #2/D ARG 75  
20250312_IAU-facet2.pdb #2/D ARG 82  
20250312_IAU-facet2.pdb #2/D ARG 112  
20250312_IAU-facet2.pdb #2/D ARG 121  
20250312_IAU-facet2.pdb #2/D TYR 122  
20250312_IAU-facet2.pdb #2/D ARG 161  
20250312_IAU-facet2.pdb #2/D ARG 175  
20250312_IAU-facet2.pdb #2/D TRP 194  
20250312_IAU-facet2.pdb #2/E ARG 2  
20250312_IAU-facet2.pdb #2/E TYR 10  
20250312_IAU-facet2.pdb #2/E ARG 23  
20250312_IAU-facet2.pdb #2/E ARG 27  
20250312_IAU-facet2.pdb #2/E ARG 29  
20250312_IAU-facet2.pdb #2/E ARG 32  
20250312_IAU-facet2.pdb #2/E ARG 56  
20250312_IAU-facet2.pdb #2/E ARG 61  
20250312_IAU-facet2.pdb #2/E TYR 63  
20250312_IAU-facet2.pdb #2/E TYR 70  
20250312_IAU-facet2.pdb #2/E ARG 73  
20250312_IAU-facet2.pdb #2/E ARG 75  
20250312_IAU-facet2.pdb #2/E ARG 82  
20250312_IAU-facet2.pdb #2/E ARG 112  
20250312_IAU-facet2.pdb #2/E ARG 121  
20250312_IAU-facet2.pdb #2/E TYR 122  
20250312_IAU-facet2.pdb #2/E ARG 161  
20250312_IAU-facet2.pdb #2/E ARG 175  
20250312_IAU-facet2.pdb #2/E TRP 194  
20250312_IAU-facet2.pdb #2/F ARG 2  
20250312_IAU-facet2.pdb #2/F TYR 10  
20250312_IAU-facet2.pdb #2/F ARG 23  
20250312_IAU-facet2.pdb #2/F ARG 27  
20250312_IAU-facet2.pdb #2/F ARG 29  
20250312_IAU-facet2.pdb #2/F ARG 32  
20250312_IAU-facet2.pdb #2/F ARG 56  
20250312_IAU-facet2.pdb #2/F ARG 61  
20250312_IAU-facet2.pdb #2/F TYR 63  
20250312_IAU-facet2.pdb #2/F TYR 70  
20250312_IAU-facet2.pdb #2/F ARG 73  
20250312_IAU-facet2.pdb #2/F ARG 75  
20250312_IAU-facet2.pdb #2/F ARG 82  
20250312_IAU-facet2.pdb #2/F ARG 112  
20250312_IAU-facet2.pdb #2/F ARG 121  
20250312_IAU-facet2.pdb #2/F TYR 122  
20250312_IAU-facet2.pdb #2/F ARG 161  
20250312_IAU-facet2.pdb #2/F ARG 175  
20250312_IAU-facet2.pdb #2/F TRP 194  
20250312_IAU-facet2.pdb #2/G ARG 2  
20250312_IAU-facet2.pdb #2/G TYR 10  
20250312_IAU-facet2.pdb #2/G ARG 23  
20250312_IAU-facet2.pdb #2/G ARG 27  
20250312_IAU-facet2.pdb #2/G ARG 29  
20250312_IAU-facet2.pdb #2/G ARG 32  
20250312_IAU-facet2.pdb #2/G ARG 56  
20250312_IAU-facet2.pdb #2/G ARG 61  
20250312_IAU-facet2.pdb #2/G TYR 63  
20250312_IAU-facet2.pdb #2/G TYR 70  
20250312_IAU-facet2.pdb #2/G ARG 73  
20250312_IAU-facet2.pdb #2/G ARG 75  
20250312_IAU-facet2.pdb #2/G ARG 82  
20250312_IAU-facet2.pdb #2/G ARG 112  
20250312_IAU-facet2.pdb #2/G ARG 121  
20250312_IAU-facet2.pdb #2/G TYR 122  
20250312_IAU-facet2.pdb #2/G ARG 161  
20250312_IAU-facet2.pdb #2/G ARG 175  
20250312_IAU-facet2.pdb #2/G TRP 194  
20250312_IAU-facet2.pdb #2/H ARG 2  
20250312_IAU-facet2.pdb #2/H TYR 10  
20250312_IAU-facet2.pdb #2/H ARG 23  
20250312_IAU-facet2.pdb #2/H ARG 27  
20250312_IAU-facet2.pdb #2/H ARG 29  
20250312_IAU-facet2.pdb #2/H ARG 32  
20250312_IAU-facet2.pdb #2/H ARG 56  
20250312_IAU-facet2.pdb #2/H ARG 61  
20250312_IAU-facet2.pdb #2/H TYR 63  
20250312_IAU-facet2.pdb #2/H TYR 70  
20250312_IAU-facet2.pdb #2/H ARG 73  
20250312_IAU-facet2.pdb #2/H ARG 75  
20250312_IAU-facet2.pdb #2/H ARG 82  
20250312_IAU-facet2.pdb #2/H ARG 112  
20250312_IAU-facet2.pdb #2/H ARG 121  
20250312_IAU-facet2.pdb #2/H TYR 122  
20250312_IAU-facet2.pdb #2/H ARG 161  
20250312_IAU-facet2.pdb #2/H ARG 175  
20250312_IAU-facet2.pdb #2/H TRP 194  
20250312_IAU-facet2.pdb #2/I ARG 2  
20250312_IAU-facet2.pdb #2/I TYR 10  
20250312_IAU-facet2.pdb #2/I ARG 23  
20250312_IAU-facet2.pdb #2/I ARG 27  
20250312_IAU-facet2.pdb #2/I ARG 29  
20250312_IAU-facet2.pdb #2/I ARG 32  
20250312_IAU-facet2.pdb #2/I ARG 56  
20250312_IAU-facet2.pdb #2/I ARG 61  
20250312_IAU-facet2.pdb #2/I TYR 63  
20250312_IAU-facet2.pdb #2/I TYR 70  
20250312_IAU-facet2.pdb #2/I ARG 73  
20250312_IAU-facet2.pdb #2/I ARG 75  
20250312_IAU-facet2.pdb #2/I ARG 82  
20250312_IAU-facet2.pdb #2/I ARG 112  
20250312_IAU-facet2.pdb #2/I ARG 121  
20250312_IAU-facet2.pdb #2/I TYR 122  
20250312_IAU-facet2.pdb #2/I ARG 161  
20250312_IAU-facet2.pdb #2/I ARG 175  
20250312_IAU-facet2.pdb #2/I TRP 194  
20250312_IAU-facet2.pdb #2/J ARG 2  
20250312_IAU-facet2.pdb #2/J TYR 10  
20250312_IAU-facet2.pdb #2/J ARG 23  
20250312_IAU-facet2.pdb #2/J ARG 27  
20250312_IAU-facet2.pdb #2/J ARG 29  
20250312_IAU-facet2.pdb #2/J ARG 32  
20250312_IAU-facet2.pdb #2/J ARG 56  
20250312_IAU-facet2.pdb #2/J ARG 61  
20250312_IAU-facet2.pdb #2/J TYR 63  
20250312_IAU-facet2.pdb #2/J TYR 70  
20250312_IAU-facet2.pdb #2/J ARG 73  
20250312_IAU-facet2.pdb #2/J ARG 75  
20250312_IAU-facet2.pdb #2/J ARG 82  
20250312_IAU-facet2.pdb #2/J ARG 112  
20250312_IAU-facet2.pdb #2/J ARG 121  
20250312_IAU-facet2.pdb #2/J TYR 122  
20250312_IAU-facet2.pdb #2/J ARG 161  
20250312_IAU-facet2.pdb #2/J ARG 175  
20250312_IAU-facet2.pdb #2/J TRP 194  
20250312_IAU-facet2.pdb #2/K ARG 2  
20250312_IAU-facet2.pdb #2/K TYR 10  
20250312_IAU-facet2.pdb #2/K ARG 23  
20250312_IAU-facet2.pdb #2/K ARG 27  
20250312_IAU-facet2.pdb #2/K ARG 29  
20250312_IAU-facet2.pdb #2/K ARG 32  
20250312_IAU-facet2.pdb #2/K ARG 56  
20250312_IAU-facet2.pdb #2/K ARG 61  
20250312_IAU-facet2.pdb #2/K TYR 63  
20250312_IAU-facet2.pdb #2/K TYR 70  
20250312_IAU-facet2.pdb #2/K ARG 73  
20250312_IAU-facet2.pdb #2/K ARG 75  
20250312_IAU-facet2.pdb #2/K ARG 82  
20250312_IAU-facet2.pdb #2/K ARG 112  
20250312_IAU-facet2.pdb #2/K ARG 121  
20250312_IAU-facet2.pdb #2/K TYR 122  
20250312_IAU-facet2.pdb #2/K ARG 161  
20250312_IAU-facet2.pdb #2/K ARG 175  
20250312_IAU-facet2.pdb #2/K TRP 194  
20250312_IAU-facet2.pdb #2/L ARG 2  
20250312_IAU-facet2.pdb #2/L TYR 10  
20250312_IAU-facet2.pdb #2/L ARG 23  
20250312_IAU-facet2.pdb #2/L ARG 27  
20250312_IAU-facet2.pdb #2/L ARG 29  
20250312_IAU-facet2.pdb #2/L ARG 32  
20250312_IAU-facet2.pdb #2/L ARG 56  
20250312_IAU-facet2.pdb #2/L ARG 61  
20250312_IAU-facet2.pdb #2/L TYR 63  
20250312_IAU-facet2.pdb #2/L TYR 70  
20250312_IAU-facet2.pdb #2/L ARG 73  
20250312_IAU-facet2.pdb #2/L ARG 75  
20250312_IAU-facet2.pdb #2/L ARG 82  
20250312_IAU-facet2.pdb #2/L ARG 112  
20250312_IAU-facet2.pdb #2/L ARG 121  
20250312_IAU-facet2.pdb #2/L TYR 122  
20250312_IAU-facet2.pdb #2/L ARG 161  
20250312_IAU-facet2.pdb #2/L ARG 175  
20250312_IAU-facet2.pdb #2/L TRP 194  
20250312_IAU-facet2.pdb #2/M ARG 2  
20250312_IAU-facet2.pdb #2/M TYR 10  
20250312_IAU-facet2.pdb #2/M ARG 23  
20250312_IAU-facet2.pdb #2/M ARG 27  
20250312_IAU-facet2.pdb #2/M ARG 29  
20250312_IAU-facet2.pdb #2/M ARG 32  
20250312_IAU-facet2.pdb #2/M ARG 56  
20250312_IAU-facet2.pdb #2/M ARG 61  
20250312_IAU-facet2.pdb #2/M TYR 63  
20250312_IAU-facet2.pdb #2/M TYR 70  
20250312_IAU-facet2.pdb #2/M ARG 73  
20250312_IAU-facet2.pdb #2/M ARG 75  
20250312_IAU-facet2.pdb #2/M ARG 82  
20250312_IAU-facet2.pdb #2/M ARG 112  
20250312_IAU-facet2.pdb #2/M ARG 121  
20250312_IAU-facet2.pdb #2/M TYR 122  
20250312_IAU-facet2.pdb #2/M ARG 161  
20250312_IAU-facet2.pdb #2/M ARG 175  
20250312_IAU-facet2.pdb #2/M TRP 194  
20250312_IAU-facet2.pdb #2/N ARG 2  
20250312_IAU-facet2.pdb #2/N TYR 10  
20250312_IAU-facet2.pdb #2/N ARG 23  
20250312_IAU-facet2.pdb #2/N ARG 27  
20250312_IAU-facet2.pdb #2/N ARG 29  
20250312_IAU-facet2.pdb #2/N ARG 32  
20250312_IAU-facet2.pdb #2/N ARG 56  
20250312_IAU-facet2.pdb #2/N ARG 61  
20250312_IAU-facet2.pdb #2/N TYR 63  
20250312_IAU-facet2.pdb #2/N TYR 70  
20250312_IAU-facet2.pdb #2/N ARG 73  
20250312_IAU-facet2.pdb #2/N ARG 75  
20250312_IAU-facet2.pdb #2/N ARG 82  
20250312_IAU-facet2.pdb #2/N ARG 112  
20250312_IAU-facet2.pdb #2/N ARG 121  
20250312_IAU-facet2.pdb #2/N TYR 122  
20250312_IAU-facet2.pdb #2/N ARG 161  
20250312_IAU-facet2.pdb #2/N ARG 175  
20250312_IAU-facet2.pdb #2/N TRP 194  
20250312_IAU-facet2.pdb #2/O ARG 2  
20250312_IAU-facet2.pdb #2/O TYR 10  
20250312_IAU-facet2.pdb #2/O ARG 23  
20250312_IAU-facet2.pdb #2/O ARG 27  
20250312_IAU-facet2.pdb #2/O ARG 29  
20250312_IAU-facet2.pdb #2/O ARG 32  
20250312_IAU-facet2.pdb #2/O ARG 56  
20250312_IAU-facet2.pdb #2/O ARG 61  
20250312_IAU-facet2.pdb #2/O TYR 63  
20250312_IAU-facet2.pdb #2/O TYR 70  
20250312_IAU-facet2.pdb #2/O ARG 73  
20250312_IAU-facet2.pdb #2/O ARG 75  
20250312_IAU-facet2.pdb #2/O ARG 82  
20250312_IAU-facet2.pdb #2/O ARG 112  
20250312_IAU-facet2.pdb #2/O ARG 121  
20250312_IAU-facet2.pdb #2/O TYR 122  
20250312_IAU-facet2.pdb #2/O ARG 161  
20250312_IAU-facet2.pdb #2/O ARG 175  
20250312_IAU-facet2.pdb #2/O TRP 194  
20250312_IAU-facet2.pdb #2/P ARG 2  
20250312_IAU-facet2.pdb #2/P TYR 10  
20250312_IAU-facet2.pdb #2/P ARG 23  
20250312_IAU-facet2.pdb #2/P ARG 27  
20250312_IAU-facet2.pdb #2/P ARG 29  
20250312_IAU-facet2.pdb #2/P ARG 32  
20250312_IAU-facet2.pdb #2/P ARG 56  
20250312_IAU-facet2.pdb #2/P ARG 61  
20250312_IAU-facet2.pdb #2/P TYR 63  
20250312_IAU-facet2.pdb #2/P TYR 70  
20250312_IAU-facet2.pdb #2/P ARG 73  
20250312_IAU-facet2.pdb #2/P ARG 75  
20250312_IAU-facet2.pdb #2/P ARG 82  
20250312_IAU-facet2.pdb #2/P ARG 112  
20250312_IAU-facet2.pdb #2/P ARG 121  
20250312_IAU-facet2.pdb #2/P TYR 122  
20250312_IAU-facet2.pdb #2/P ARG 161  
20250312_IAU-facet2.pdb #2/P ARG 175  
20250312_IAU-facet2.pdb #2/P TRP 194  
20250312_IAU-facet2.pdb #2/Q ARG 2  
20250312_IAU-facet2.pdb #2/Q TYR 10  
20250312_IAU-facet2.pdb #2/Q ARG 23  
20250312_IAU-facet2.pdb #2/Q ARG 27  
20250312_IAU-facet2.pdb #2/Q ARG 29  
20250312_IAU-facet2.pdb #2/Q ARG 32  
20250312_IAU-facet2.pdb #2/Q ARG 56  
20250312_IAU-facet2.pdb #2/Q ARG 61  
20250312_IAU-facet2.pdb #2/Q TYR 63  
20250312_IAU-facet2.pdb #2/Q TYR 70  
20250312_IAU-facet2.pdb #2/Q ARG 73  
20250312_IAU-facet2.pdb #2/Q ARG 75  
20250312_IAU-facet2.pdb #2/Q ARG 82  
20250312_IAU-facet2.pdb #2/Q ARG 112  
20250312_IAU-facet2.pdb #2/Q ARG 121  
20250312_IAU-facet2.pdb #2/Q TYR 122  
20250312_IAU-facet2.pdb #2/Q ARG 161  
20250312_IAU-facet2.pdb #2/Q ARG 175  
20250312_IAU-facet2.pdb #2/Q TRP 194  
20250312_IAU-facet2.pdb #2/R ARG 2  
20250312_IAU-facet2.pdb #2/R TYR 10  
20250312_IAU-facet2.pdb #2/R ARG 23  
20250312_IAU-facet2.pdb #2/R ARG 27  
20250312_IAU-facet2.pdb #2/R ARG 29  
20250312_IAU-facet2.pdb #2/R ARG 32  
20250312_IAU-facet2.pdb #2/R ARG 56  
20250312_IAU-facet2.pdb #2/R ARG 61  
20250312_IAU-facet2.pdb #2/R TYR 63  
20250312_IAU-facet2.pdb #2/R TYR 70  
20250312_IAU-facet2.pdb #2/R ARG 73  
20250312_IAU-facet2.pdb #2/R ARG 75  
20250312_IAU-facet2.pdb #2/R ARG 82  
20250312_IAU-facet2.pdb #2/R ARG 112  
20250312_IAU-facet2.pdb #2/R ARG 121  
20250312_IAU-facet2.pdb #2/R TYR 122  
20250312_IAU-facet2.pdb #2/R ARG 161  
20250312_IAU-facet2.pdb #2/R ARG 175  
20250312_IAU-facet2.pdb #2/R TRP 194  
20250312_IAU-facet2.pdb #2/S ARG 2  
20250312_IAU-facet2.pdb #2/S TYR 10  
20250312_IAU-facet2.pdb #2/S ARG 23  
20250312_IAU-facet2.pdb #2/S ARG 27  
20250312_IAU-facet2.pdb #2/S ARG 29  
20250312_IAU-facet2.pdb #2/S ARG 32  
20250312_IAU-facet2.pdb #2/S ARG 56  
20250312_IAU-facet2.pdb #2/S ARG 61  
20250312_IAU-facet2.pdb #2/S TYR 63  
20250312_IAU-facet2.pdb #2/S TYR 70  
20250312_IAU-facet2.pdb #2/S ARG 73  
20250312_IAU-facet2.pdb #2/S ARG 75  
20250312_IAU-facet2.pdb #2/S ARG 82  
20250312_IAU-facet2.pdb #2/S ARG 112  
20250312_IAU-facet2.pdb #2/S ARG 121  
20250312_IAU-facet2.pdb #2/S TYR 122  
20250312_IAU-facet2.pdb #2/S ARG 161  
20250312_IAU-facet2.pdb #2/S ARG 175  
20250312_IAU-facet2.pdb #2/S TRP 194  
20250312_IAU-facet2.pdb #2/T ARG 2  
20250312_IAU-facet2.pdb #2/T TYR 10  
20250312_IAU-facet2.pdb #2/T ARG 23  
20250312_IAU-facet2.pdb #2/T ARG 27  
20250312_IAU-facet2.pdb #2/T ARG 29  
20250312_IAU-facet2.pdb #2/T ARG 32  
20250312_IAU-facet2.pdb #2/T ARG 56  
20250312_IAU-facet2.pdb #2/T ARG 61  
20250312_IAU-facet2.pdb #2/T TYR 63  
20250312_IAU-facet2.pdb #2/T TYR 70  
20250312_IAU-facet2.pdb #2/T ARG 73  
20250312_IAU-facet2.pdb #2/T ARG 75  
20250312_IAU-facet2.pdb #2/T ARG 82  
20250312_IAU-facet2.pdb #2/T ARG 112  
20250312_IAU-facet2.pdb #2/T ARG 121  
20250312_IAU-facet2.pdb #2/T TYR 122  
20250312_IAU-facet2.pdb #2/T ARG 161  
20250312_IAU-facet2.pdb #2/T ARG 175  
20250312_IAU-facet2.pdb #2/T TRP 194  
20250312_IAU-facet2.pdb #2/U ARG 2  
20250312_IAU-facet2.pdb #2/U TYR 10  
20250312_IAU-facet2.pdb #2/U ARG 23  
20250312_IAU-facet2.pdb #2/U ARG 27  
20250312_IAU-facet2.pdb #2/U ARG 29  
20250312_IAU-facet2.pdb #2/U ARG 32  
20250312_IAU-facet2.pdb #2/U ARG 56  
20250312_IAU-facet2.pdb #2/U ARG 61  
20250312_IAU-facet2.pdb #2/U TYR 63  
20250312_IAU-facet2.pdb #2/U TYR 70  
20250312_IAU-facet2.pdb #2/U ARG 73  
20250312_IAU-facet2.pdb #2/U ARG 75  
20250312_IAU-facet2.pdb #2/U ARG 82  
20250312_IAU-facet2.pdb #2/U ARG 112  
20250312_IAU-facet2.pdb #2/U ARG 121  
20250312_IAU-facet2.pdb #2/U TYR 122  
20250312_IAU-facet2.pdb #2/U ARG 161  
20250312_IAU-facet2.pdb #2/U ARG 175  
20250312_IAU-facet2.pdb #2/U TRP 194  
20250312_IAU-facet2.pdb #2/a TYR 5  
20250312_IAU-facet2.pdb #2/a ARG 10  
20250312_IAU-facet2.pdb #2/a ARG 26  
20250312_IAU-facet2.pdb #2/a TYR 58  
20250312_IAU-facet2.pdb #2/a ARG 60  
20250312_IAU-facet2.pdb #2/a ARG 65  
20250312_IAU-facet2.pdb #2/a ARG 67  
20250312_IAU-facet2.pdb #2/a TYR 69  
20250312_IAU-facet2.pdb #2/a ARG 106  
20250312_IAU-facet2.pdb #2/a TYR 133  
20250312_IAU-facet2.pdb #2/a ARG 149  
20250312_IAU-facet2.pdb #2/a ARG 160  
20250312_IAU-facet2.pdb #2/a TRP 173  
20250312_IAU-facet2.pdb #2/a TRP 191  
20250312_IAU-facet2.pdb #2/a ARG 210  
20250312_IAU-facet2.pdb #2/b TYR 5  
20250312_IAU-facet2.pdb #2/b ARG 10  
20250312_IAU-facet2.pdb #2/b ARG 26  
20250312_IAU-facet2.pdb #2/b TYR 58  
20250312_IAU-facet2.pdb #2/b ARG 60  
20250312_IAU-facet2.pdb #2/b ARG 65  
20250312_IAU-facet2.pdb #2/b ARG 67  
20250312_IAU-facet2.pdb #2/b TYR 69  
20250312_IAU-facet2.pdb #2/b ARG 106  
20250312_IAU-facet2.pdb #2/b TYR 133  
20250312_IAU-facet2.pdb #2/b ARG 149  
20250312_IAU-facet2.pdb #2/b ARG 160  
20250312_IAU-facet2.pdb #2/b TRP 173  
20250312_IAU-facet2.pdb #2/b TRP 191  
20250312_IAU-facet2.pdb #2/b ARG 210  
20250312_IAU-facet2.pdb #2/c TYR 5  
20250312_IAU-facet2.pdb #2/c ARG 10  
20250312_IAU-facet2.pdb #2/c ARG 26  
20250312_IAU-facet2.pdb #2/c TYR 58  
20250312_IAU-facet2.pdb #2/c ARG 60  
20250312_IAU-facet2.pdb #2/c ARG 65  
20250312_IAU-facet2.pdb #2/c ARG 67  
20250312_IAU-facet2.pdb #2/c TYR 69  
20250312_IAU-facet2.pdb #2/c ARG 106  
20250312_IAU-facet2.pdb #2/c TYR 133  
20250312_IAU-facet2.pdb #2/c ARG 149  
20250312_IAU-facet2.pdb #2/c ARG 160  
20250312_IAU-facet2.pdb #2/c TRP 173  
20250312_IAU-facet2.pdb #2/c TRP 191  
20250312_IAU-facet2.pdb #2/c ARG 210  
20250312_IAU-facet2.pdb #2/d TYR 5  
20250312_IAU-facet2.pdb #2/d ARG 10  
20250312_IAU-facet2.pdb #2/d ARG 26  
20250312_IAU-facet2.pdb #2/d TYR 58  
20250312_IAU-facet2.pdb #2/d ARG 60  
20250312_IAU-facet2.pdb #2/d ARG 65  
20250312_IAU-facet2.pdb #2/d ARG 67  
20250312_IAU-facet2.pdb #2/d TYR 69  
20250312_IAU-facet2.pdb #2/d ARG 106  
20250312_IAU-facet2.pdb #2/d TYR 133  
20250312_IAU-facet2.pdb #2/d ARG 149  
20250312_IAU-facet2.pdb #2/d ARG 160  
20250312_IAU-facet2.pdb #2/d TRP 173  
20250312_IAU-facet2.pdb #2/d TRP 191  
20250312_IAU-facet2.pdb #2/d ARG 210  
20250312_IAU-facet2.pdb #2/e TYR 5  
20250312_IAU-facet2.pdb #2/e ARG 10  
20250312_IAU-facet2.pdb #2/e ARG 26  
20250312_IAU-facet2.pdb #2/e TYR 58  
20250312_IAU-facet2.pdb #2/e ARG 60  
20250312_IAU-facet2.pdb #2/e ARG 65  
20250312_IAU-facet2.pdb #2/e ARG 67  
20250312_IAU-facet2.pdb #2/e TYR 69  
20250312_IAU-facet2.pdb #2/e ARG 106  
20250312_IAU-facet2.pdb #2/e TYR 133  
20250312_IAU-facet2.pdb #2/e ARG 149  
20250312_IAU-facet2.pdb #2/e ARG 160  
20250312_IAU-facet2.pdb #2/e TRP 173  
20250312_IAU-facet2.pdb #2/e TRP 191  
20250312_IAU-facet2.pdb #2/e ARG 210  
20250312_IAU-facet2.pdb #2/f TYR 5  
20250312_IAU-facet2.pdb #2/f ARG 10  
20250312_IAU-facet2.pdb #2/f ARG 26  
20250312_IAU-facet2.pdb #2/f TYR 58  
20250312_IAU-facet2.pdb #2/f ARG 60  
20250312_IAU-facet2.pdb #2/f ARG 65  
20250312_IAU-facet2.pdb #2/f ARG 67  
20250312_IAU-facet2.pdb #2/f TYR 69  
20250312_IAU-facet2.pdb #2/f ARG 106  
20250312_IAU-facet2.pdb #2/f TYR 133  
20250312_IAU-facet2.pdb #2/f ARG 149  
20250312_IAU-facet2.pdb #2/f ARG 160  
20250312_IAU-facet2.pdb #2/f TRP 173  
20250312_IAU-facet2.pdb #2/f TRP 191  
20250312_IAU-facet2.pdb #2/f ARG 210  
20250312_IAU-facet2.pdb #2/g TYR 5  
20250312_IAU-facet2.pdb #2/g ARG 10  
20250312_IAU-facet2.pdb #2/g ARG 26  
20250312_IAU-facet2.pdb #2/g TYR 58  
20250312_IAU-facet2.pdb #2/g ARG 60  
20250312_IAU-facet2.pdb #2/g ARG 65  
20250312_IAU-facet2.pdb #2/g ARG 67  
20250312_IAU-facet2.pdb #2/g TYR 69  
20250312_IAU-facet2.pdb #2/g ARG 106  
20250312_IAU-facet2.pdb #2/g TYR 133  
20250312_IAU-facet2.pdb #2/g ARG 149  
20250312_IAU-facet2.pdb #2/g ARG 160  
20250312_IAU-facet2.pdb #2/g TRP 173  
20250312_IAU-facet2.pdb #2/g TRP 191  
20250312_IAU-facet2.pdb #2/g ARG 210  
20250312_IAU-facet2.pdb #2/h TYR 5  
20250312_IAU-facet2.pdb #2/h ARG 10  
20250312_IAU-facet2.pdb #2/h ARG 26  
20250312_IAU-facet2.pdb #2/h TYR 58  
20250312_IAU-facet2.pdb #2/h ARG 60  
20250312_IAU-facet2.pdb #2/h ARG 65  
20250312_IAU-facet2.pdb #2/h ARG 67  
20250312_IAU-facet2.pdb #2/h TYR 69  
20250312_IAU-facet2.pdb #2/h ARG 106  
20250312_IAU-facet2.pdb #2/h TYR 133  
20250312_IAU-facet2.pdb #2/h ARG 149  
20250312_IAU-facet2.pdb #2/h ARG 160  
20250312_IAU-facet2.pdb #2/h TRP 173  
20250312_IAU-facet2.pdb #2/h TRP 191  
20250312_IAU-facet2.pdb #2/h ARG 210  
20250312_IAU-facet2.pdb #2/i TYR 5  
20250312_IAU-facet2.pdb #2/i ARG 10  
20250312_IAU-facet2.pdb #2/i ARG 26  
20250312_IAU-facet2.pdb #2/i TYR 58  
20250312_IAU-facet2.pdb #2/i ARG 60  
20250312_IAU-facet2.pdb #2/i ARG 65  
20250312_IAU-facet2.pdb #2/i ARG 67  
20250312_IAU-facet2.pdb #2/i TYR 69  
20250312_IAU-facet2.pdb #2/i ARG 106  
20250312_IAU-facet2.pdb #2/i TYR 133  
20250312_IAU-facet2.pdb #2/i ARG 149  
20250312_IAU-facet2.pdb #2/i ARG 160  
20250312_IAU-facet2.pdb #2/i TRP 173  
20250312_IAU-facet2.pdb #2/i TRP 191  
20250312_IAU-facet2.pdb #2/i ARG 210  
20250312_IAU-facet2.pdb #2/j TYR 5  
20250312_IAU-facet2.pdb #2/j ARG 10  
20250312_IAU-facet2.pdb #2/j ARG 26  
20250312_IAU-facet2.pdb #2/j TYR 58  
20250312_IAU-facet2.pdb #2/j ARG 60  
20250312_IAU-facet2.pdb #2/j ARG 65  
20250312_IAU-facet2.pdb #2/j ARG 67  
20250312_IAU-facet2.pdb #2/j TYR 69  
20250312_IAU-facet2.pdb #2/j ARG 106  
20250312_IAU-facet2.pdb #2/j TYR 133  
20250312_IAU-facet2.pdb #2/j ARG 149  
20250312_IAU-facet2.pdb #2/j ARG 160  
20250312_IAU-facet2.pdb #2/j TRP 173  
20250312_IAU-facet2.pdb #2/j TRP 191  
20250312_IAU-facet2.pdb #2/j ARG 210  
20250312_IAU-facet2.pdb #2/k TYR 5  
20250312_IAU-facet2.pdb #2/k ARG 10  
20250312_IAU-facet2.pdb #2/k ARG 26  
20250312_IAU-facet2.pdb #2/k TYR 58  
20250312_IAU-facet2.pdb #2/k ARG 60  
20250312_IAU-facet2.pdb #2/k ARG 65  
20250312_IAU-facet2.pdb #2/k ARG 67  
20250312_IAU-facet2.pdb #2/k TYR 69  
20250312_IAU-facet2.pdb #2/k ARG 106  
20250312_IAU-facet2.pdb #2/k TYR 133  
20250312_IAU-facet2.pdb #2/k ARG 149  
20250312_IAU-facet2.pdb #2/k ARG 160  
20250312_IAU-facet2.pdb #2/k TRP 173  
20250312_IAU-facet2.pdb #2/k TRP 191  
20250312_IAU-facet2.pdb #2/k ARG 210  
20250312_IAU-facet2.pdb #2/l TYR 5  
20250312_IAU-facet2.pdb #2/l ARG 10  
20250312_IAU-facet2.pdb #2/l ARG 26  
20250312_IAU-facet2.pdb #2/l TYR 58  
20250312_IAU-facet2.pdb #2/l ARG 60  
20250312_IAU-facet2.pdb #2/l ARG 65  
20250312_IAU-facet2.pdb #2/l ARG 67  
20250312_IAU-facet2.pdb #2/l TYR 69  
20250312_IAU-facet2.pdb #2/l ARG 106  
20250312_IAU-facet2.pdb #2/l TYR 133  
20250312_IAU-facet2.pdb #2/l ARG 149  
20250312_IAU-facet2.pdb #2/l ARG 160  
20250312_IAU-facet2.pdb #2/l TRP 173  
20250312_IAU-facet2.pdb #2/l TRP 191  
20250312_IAU-facet2.pdb #2/l ARG 210  
20250312_IAU-facet2.pdb #2/m TYR 5  
20250312_IAU-facet2.pdb #2/m ARG 10  
20250312_IAU-facet2.pdb #2/m ARG 26  
20250312_IAU-facet2.pdb #2/m TYR 58  
20250312_IAU-facet2.pdb #2/m ARG 60  
20250312_IAU-facet2.pdb #2/m ARG 65  
20250312_IAU-facet2.pdb #2/m ARG 67  
20250312_IAU-facet2.pdb #2/m TYR 69  
20250312_IAU-facet2.pdb #2/m ARG 106  
20250312_IAU-facet2.pdb #2/m TYR 133  
20250312_IAU-facet2.pdb #2/m ARG 149  
20250312_IAU-facet2.pdb #2/m ARG 160  
20250312_IAU-facet2.pdb #2/m TRP 173  
20250312_IAU-facet2.pdb #2/m TRP 191  
20250312_IAU-facet2.pdb #2/m ARG 210  
20250312_IAU-facet2.pdb #2/n TYR 5  
20250312_IAU-facet2.pdb #2/n ARG 10  
20250312_IAU-facet2.pdb #2/n ARG 26  
20250312_IAU-facet2.pdb #2/n TYR 58  
20250312_IAU-facet2.pdb #2/n ARG 60  
20250312_IAU-facet2.pdb #2/n ARG 65  
20250312_IAU-facet2.pdb #2/n ARG 67  
20250312_IAU-facet2.pdb #2/n TYR 69  
20250312_IAU-facet2.pdb #2/n ARG 106  
20250312_IAU-facet2.pdb #2/n TYR 133  
20250312_IAU-facet2.pdb #2/n ARG 149  
20250312_IAU-facet2.pdb #2/n ARG 160  
20250312_IAU-facet2.pdb #2/n TRP 173  
20250312_IAU-facet2.pdb #2/n TRP 191  
20250312_IAU-facet2.pdb #2/n ARG 210  
20250312_IAU-facet2.pdb #2/o TYR 5  
20250312_IAU-facet2.pdb #2/o ARG 10  
20250312_IAU-facet2.pdb #2/o ARG 26  
20250312_IAU-facet2.pdb #2/o TYR 58  
20250312_IAU-facet2.pdb #2/o ARG 60  
20250312_IAU-facet2.pdb #2/o ARG 65  
20250312_IAU-facet2.pdb #2/o ARG 67  
20250312_IAU-facet2.pdb #2/o TYR 69  
20250312_IAU-facet2.pdb #2/o ARG 106  
20250312_IAU-facet2.pdb #2/o TYR 133  
20250312_IAU-facet2.pdb #2/o ARG 149  
20250312_IAU-facet2.pdb #2/o ARG 160  
20250312_IAU-facet2.pdb #2/o TRP 173  
20250312_IAU-facet2.pdb #2/o TRP 191  
20250312_IAU-facet2.pdb #2/o ARG 210  
20250312_IAU-facet2.pdb #2/p TYR 5  
20250312_IAU-facet2.pdb #2/p ARG 10  
20250312_IAU-facet2.pdb #2/p ARG 26  
20250312_IAU-facet2.pdb #2/p TYR 58  
20250312_IAU-facet2.pdb #2/p ARG 60  
20250312_IAU-facet2.pdb #2/p ARG 65  
20250312_IAU-facet2.pdb #2/p ARG 67  
20250312_IAU-facet2.pdb #2/p TYR 69  
20250312_IAU-facet2.pdb #2/p ARG 106  
20250312_IAU-facet2.pdb #2/p TYR 133  
20250312_IAU-facet2.pdb #2/p ARG 149  
20250312_IAU-facet2.pdb #2/p ARG 160  
20250312_IAU-facet2.pdb #2/p TRP 173  
20250312_IAU-facet2.pdb #2/p TRP 191  
20250312_IAU-facet2.pdb #2/p ARG 210  
20250312_IAU-facet2.pdb #2/q TYR 5  
20250312_IAU-facet2.pdb #2/q ARG 10  
20250312_IAU-facet2.pdb #2/q ARG 26  
20250312_IAU-facet2.pdb #2/q TYR 58  
20250312_IAU-facet2.pdb #2/q ARG 60  
20250312_IAU-facet2.pdb #2/q ARG 65  
20250312_IAU-facet2.pdb #2/q ARG 67  
20250312_IAU-facet2.pdb #2/q TYR 69  
20250312_IAU-facet2.pdb #2/q ARG 106  
20250312_IAU-facet2.pdb #2/q TYR 133  
20250312_IAU-facet2.pdb #2/q ARG 149  
20250312_IAU-facet2.pdb #2/q ARG 160  
20250312_IAU-facet2.pdb #2/q TRP 173  
20250312_IAU-facet2.pdb #2/q TRP 191  
20250312_IAU-facet2.pdb #2/q ARG 210  
20250312_IAU-facet2.pdb #2/r TYR 5  
20250312_IAU-facet2.pdb #2/r ARG 10  
20250312_IAU-facet2.pdb #2/r ARG 26  
20250312_IAU-facet2.pdb #2/r TYR 58  
20250312_IAU-facet2.pdb #2/r ARG 60  
20250312_IAU-facet2.pdb #2/r ARG 65  
20250312_IAU-facet2.pdb #2/r ARG 67  
20250312_IAU-facet2.pdb #2/r TYR 69  
20250312_IAU-facet2.pdb #2/r ARG 106  
20250312_IAU-facet2.pdb #2/r TYR 133  
20250312_IAU-facet2.pdb #2/r ARG 149  
20250312_IAU-facet2.pdb #2/r ARG 160  
20250312_IAU-facet2.pdb #2/r TRP 173  
20250312_IAU-facet2.pdb #2/r TRP 191  
20250312_IAU-facet2.pdb #2/r ARG 210  
20250312_IAU-facet2.pdb #2/s TYR 5  
20250312_IAU-facet2.pdb #2/s ARG 10  
20250312_IAU-facet2.pdb #2/s ARG 26  
20250312_IAU-facet2.pdb #2/s TYR 58  
20250312_IAU-facet2.pdb #2/s ARG 60  
20250312_IAU-facet2.pdb #2/s ARG 65  
20250312_IAU-facet2.pdb #2/s ARG 67  
20250312_IAU-facet2.pdb #2/s TYR 69  
20250312_IAU-facet2.pdb #2/s ARG 106  
20250312_IAU-facet2.pdb #2/s TYR 133  
20250312_IAU-facet2.pdb #2/s ARG 149  
20250312_IAU-facet2.pdb #2/s ARG 160  
20250312_IAU-facet2.pdb #2/s TRP 173  
20250312_IAU-facet2.pdb #2/s TRP 191  
20250312_IAU-facet2.pdb #2/s ARG 210  
20250312_IAU-facet2.pdb #2/t TYR 5  
20250312_IAU-facet2.pdb #2/t ARG 10  
20250312_IAU-facet2.pdb #2/t ARG 26  
20250312_IAU-facet2.pdb #2/t TYR 58  
20250312_IAU-facet2.pdb #2/t ARG 60  
20250312_IAU-facet2.pdb #2/t ARG 65  
20250312_IAU-facet2.pdb #2/t ARG 67  
20250312_IAU-facet2.pdb #2/t TYR 69  
20250312_IAU-facet2.pdb #2/t ARG 106  
20250312_IAU-facet2.pdb #2/t TYR 133  
20250312_IAU-facet2.pdb #2/t ARG 149  
20250312_IAU-facet2.pdb #2/t ARG 160  
20250312_IAU-facet2.pdb #2/t TRP 173  
20250312_IAU-facet2.pdb #2/t TRP 191  
20250312_IAU-facet2.pdb #2/t ARG 210  
20250312_IAU-facet2.pdb #2/u TYR 5  
20250312_IAU-facet2.pdb #2/u ARG 10  
20250312_IAU-facet2.pdb #2/u ARG 26  
20250312_IAU-facet2.pdb #2/u TYR 58  
20250312_IAU-facet2.pdb #2/u ARG 60  
20250312_IAU-facet2.pdb #2/u ARG 65  
20250312_IAU-facet2.pdb #2/u ARG 67  
20250312_IAU-facet2.pdb #2/u TYR 69  
20250312_IAU-facet2.pdb #2/u ARG 106  
20250312_IAU-facet2.pdb #2/u TYR 133  
20250312_IAU-facet2.pdb #2/u ARG 149  
20250312_IAU-facet2.pdb #2/u ARG 160  
20250312_IAU-facet2.pdb #2/u TRP 173  
20250312_IAU-facet2.pdb #2/u TRP 191  
20250312_IAU-facet2.pdb #2/u ARG 210  

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 20250312_IAU-facet2.pdb_A SES surface #2.1: minimum,
-16.49, mean 0.50, maximum 29.99  
Coulombic values for 20250312_IAU-facet2.pdb_B SES surface #2.2: minimum,
-17.17, mean 0.61, maximum 16.53  
Coulombic values for 20250312_IAU-facet2.pdb_C SES surface #2.3: minimum,
-26.50, mean 0.35, maximum 17.08  
Coulombic values for 20250312_IAU-facet2.pdb_D SES surface #2.4: minimum,
-17.30, mean 0.32, maximum 16.40  
Coulombic values for 20250312_IAU-facet2.pdb_E SES surface #2.5: minimum,
-17.58, mean 0.32, maximum 18.14  
Coulombic values for 20250312_IAU-facet2.pdb_F SES surface #2.6: minimum,
-17.06, mean 0.73, maximum 16.70  
Coulombic values for 20250312_IAU-facet2.pdb_G SES surface #2.7: minimum,
-17.17, mean 0.36, maximum 15.85  
Coulombic values for 20250312_IAU-facet2.pdb_H SES surface #2.8: minimum,
-16.16, mean 0.58, maximum 17.76  
Coulombic values for 20250312_IAU-facet2.pdb_I SES surface #2.9: minimum,
-17.10, mean 0.60, maximum 16.83  
Coulombic values for 20250312_IAU-facet2.pdb_J SES surface #2.10: minimum,
-17.52, mean 0.67, maximum 19.30  
Coulombic values for 20250312_IAU-facet2.pdb_K SES surface #2.11: minimum,
-16.96, mean 0.42, maximum 26.31  
Coulombic values for 20250312_IAU-facet2.pdb_L SES surface #2.12: minimum,
-16.72, mean 0.65, maximum 16.38  
Coulombic values for 20250312_IAU-facet2.pdb_M SES surface #2.13: minimum,
-16.50, mean 0.05, maximum 16.96  
Coulombic values for 20250312_IAU-facet2.pdb_N SES surface #2.14: minimum,
-17.66, mean 0.03, maximum 17.81  
Coulombic values for 20250312_IAU-facet2.pdb_O SES surface #2.15: minimum,
-18.21, mean 0.33, maximum 15.56  
Coulombic values for 20250312_IAU-facet2.pdb_P SES surface #2.16: minimum,
-16.97, mean 0.03, maximum 16.08  
Coulombic values for 20250312_IAU-facet2.pdb_Q SES surface #2.17: minimum,
-17.25, mean 0.34, maximum 16.59  
Coulombic values for 20250312_IAU-facet2.pdb_R SES surface #2.18: minimum,
-17.22, mean 0.27, maximum 17.66  
Coulombic values for 20250312_IAU-facet2.pdb_S SES surface #2.19: minimum,
-17.03, mean 0.28, maximum 15.61  
Coulombic values for 20250312_IAU-facet2.pdb_T SES surface #2.20: minimum,
-16.29, mean 0.43, maximum 16.48  
Coulombic values for 20250312_IAU-facet2.pdb_U SES surface #2.21: minimum,
-17.49, mean 0.06, maximum 15.63  
Coulombic values for 20250312_IAU-facet2.pdb_a SES surface #2.22: minimum,
-21.41, mean -3.72, maximum 16.09  
Coulombic values for 20250312_IAU-facet2.pdb_b SES surface #2.23: minimum,
-23.21, mean -3.06, maximum 15.47  
Coulombic values for 20250312_IAU-facet2.pdb_c SES surface #2.24: minimum,
-21.04, mean -3.63, maximum 16.22  
Coulombic values for 20250312_IAU-facet2.pdb_d SES surface #2.25: minimum,
-21.86, mean -3.40, maximum 16.18  
Coulombic values for 20250312_IAU-facet2.pdb_e SES surface #2.26: minimum,
-21.06, mean -3.18, maximum 41.35  
Coulombic values for 20250312_IAU-facet2.pdb_f SES surface #2.27: minimum,
-22.85, mean -3.71, maximum 10.89  
Coulombic values for 20250312_IAU-facet2.pdb_g SES surface #2.28: minimum,
-23.74, mean -3.54, maximum 17.26  
Coulombic values for 20250312_IAU-facet2.pdb_h SES surface #2.29: minimum,
-22.15, mean -3.52, maximum 19.21  
Coulombic values for 20250312_IAU-facet2.pdb_i SES surface #2.30: minimum,
-20.44, mean -3.52, maximum 17.30  
Coulombic values for 20250312_IAU-facet2.pdb_j SES surface #2.31: minimum,
-21.05, mean -3.39, maximum 26.63  
Coulombic values for 20250312_IAU-facet2.pdb_k SES surface #2.32: minimum,
-23.06, mean -3.51, maximum 14.92  
Coulombic values for 20250312_IAU-facet2.pdb_l SES surface #2.33: minimum,
-22.28, mean -3.21, maximum 16.64  
Coulombic values for 20250312_IAU-facet2.pdb_m SES surface #2.34: minimum,
-19.44, mean -3.49, maximum 17.31  
Coulombic values for 20250312_IAU-facet2.pdb_n SES surface #2.35: minimum,
-26.58, mean -3.24, maximum 16.95  
Coulombic values for 20250312_IAU-facet2.pdb_o SES surface #2.36: minimum,
-19.96, mean -3.33, maximum 10.46  
Coulombic values for 20250312_IAU-facet2.pdb_p SES surface #2.37: minimum,
-18.99, mean -3.46, maximum 10.48  
Coulombic values for 20250312_IAU-facet2.pdb_q SES surface #2.38: minimum,
-20.74, mean -3.45, maximum 13.12  
Coulombic values for 20250312_IAU-facet2.pdb_r SES surface #2.39: minimum,
-22.75, mean -3.75, maximum 16.35  
Coulombic values for 20250312_IAU-facet2.pdb_s SES surface #2.40: minimum,
-20.82, mean -3.45, maximum 11.59  
Coulombic values for 20250312_IAU-facet2.pdb_t SES surface #2.41: minimum,
-21.48, mean -3.17, maximum 16.14  
Coulombic values for 20250312_IAU-facet2.pdb_u SES surface #2.42: minimum,
-21.69, mean -3.46, maximum 16.82  

> open /old-home/euribe/EM/ssip-1/COM/20250312_IAU-facet3.pdb

Chain information for 20250312_IAU-facet3.pdb #3  
---  
Chain | Description  
A F Q | No description available  
B C D H J K L P | No description available  
E | No description available  
G I M N O R S T U | No description available  
a c f r | No description available  
b d e g h i j k l m n o p q s t u | No description available  
  

> close #3#2

> open /old-home/euribe/EM/ssip-1/COM/RealSpaceRefine_37/20250312_IAU-
> facet2_real_space_refined_037.pdb

Chain information for 20250312_IAU-facet2_real_space_refined_037.pdb #2  
---  
Chain | Description  
A F Q | No description available  
B C D H J K L P | No description available  
E | No description available  
G I M N O R S T U | No description available  
a c f r | No description available  
b d e g h i j k l m n o p q s t u | No description available  
  

> open /old-home/euribe/EM/ssip-1/COM/RealSpaceRefine_41/20250312_IAU-
> facet3_real_space_refined_041.pdb

Chain information for 20250312_IAU-facet3_real_space_refined_041.pdb #3  
---  
Chain | Description  
A F Q | No description available  
B C D H J K L P | No description available  
E | No description available  
G I M N O R S T U | No description available  
a c f r | No description available  
b d e g h i j k l m n o p q s t u | No description available  
  

> coulombic #2


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 575.57.08
OpenGL renderer: NVIDIA T400 4GB/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=gnome
XDG_SESSION_DESKTOP=gnome
XDG_CURRENT_DESKTOP=GNOME
DISPLAY=:2
Manufacturer: HP
Model: HP Z4 G5 Workstation Desktop PC
OS: Rocky Linux 9.6 Blue Onyx
Architecture: 64bit ELF
Virtual Machine: none
CPU: 12 Intel(R) Xeon(R) w3-2425
Cache Size: 15360 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           124Gi        11Gi       1.9Gi       106Mi       113Gi       113Gi
	Swap:          2.0Gi       0.0Ki       2.0Gi

Graphics:
	47:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU117GL [T400 4GB / T400E] [10de:1ff2] (rev a1)	
	Subsystem: Hewlett-Packard Company Device [103c:1613]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

Change History (2)

comment:1 by Eric Pettersen, 4 months ago

Component: Unassigned → Core
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash in garbage collection

comment:2 by Eric Pettersen, 4 months ago

Resolution: → duplicate
Status: accepted → closed
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