![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 months ago
Closed 4 months ago
#18049 closed defect (limitation)
Graphics hardware encountered an error and was reset
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.7.10-x86_64-i386-64bit
ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
I was visualizing a big model of 15 protomers in a 1.2 MDa cryoEM map
Fatal Python error: Aborted
Current thread 0x000000010b16be00 (most recent call first):
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 1689 in set_multishadow_view
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 250 in _draw_scene
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py", line 188 in draw
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 84 in draw_new_frame
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 55)
Process: ChimeraX [5073]
Path: /Applications/ChimeraX-1.7.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.7.0 (1.7.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [5073]
User ID: 501
Date/Time: 2025-06-20 20:58:50.093 +0300
OS Version: macOS 11.7.10 (20G1427)
Report Version: 12
Anonymous UUID: 65BD8C37-22F7-C783-9511-41061272B6D5
Sleep/Wake UUID: 95BB5F3B-75F0-4497-A7DE-96CD2554A74C
Time Awake Since Boot: 25000 seconds
Time Since Wake: 2000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00008013
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2066a90e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff206995bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2057dbd5 raise + 26
3 org.python.python 0x0000000107a315d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff206ded7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 libsystem_c.dylib 0x00007fff205ee406 abort + 125
7 libGPUSupportMercury.dylib 0x00007fff46605096 gpusGenerateCrashLog.cold.1 + 95
8 libGPUSupportMercury.dylib 0x00007fff465fc21c gpusGenerateCrashLog + 89
9 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff66161bb8 gpusKillClientExt + 9
10 libGPUSupportMercury.dylib 0x00007fff465fd72d gpusSubmitDataBuffers + 490
11 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff65d2b3c4 IntelCommandBuffer::getNew(GLDContextRec*) + 48
12 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff65d2b1db intelSubmitCommands + 178
13 com.apple.driver.AppleIntelHD5000GraphicsGLDriver 0x00007fff65d318ec glrWriteBufferData + 1336
14 GLEngine 0x00007fff6be2013f glBufferSubData_Exec + 608
15 libffi.dylib 0x00007fff2dc818f5 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
17 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
18 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
19 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
20 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
21 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
22 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
23 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
24 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
25 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
26 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
27 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
28 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
29 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
30 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
31 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
32 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
33 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
34 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
35 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
36 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
37 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
38 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
39 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
40 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
41 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
42 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
43 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
44 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
45 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
46 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
47 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
48 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
49 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
50 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
51 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
52 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
53 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
54 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
55 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
56 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
57 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
58 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
59 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
60 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
61 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
62 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
63 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
64 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
65 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
66 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
67 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
68 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
69 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
70 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
71 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
72 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
73 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
74 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
75 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
76 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
77 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
78 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
79 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
80 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
81 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
82 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
83 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
84 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
85 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
86 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
87 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
88 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
89 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
90 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
91 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
92 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
93 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
94 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
95 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
96 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
97 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
98 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
99 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
100 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
101 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
102 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
103 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
104 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
105 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
106 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
107 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
108 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
109 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
110 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
111 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
112 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
113 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
114 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
115 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
116 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
117 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
118 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
119 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
120 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
121 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
122 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
123 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
124 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
125 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
126 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
127 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
128 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
129 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
130 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
131 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
132 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
133 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
134 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
135 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
136 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
137 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
138 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
139 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
140 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
141 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
142 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
143 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
144 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
145 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
146 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
147 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
148 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
149 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
150 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
151 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
152 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
153 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
154 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
155 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
156 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
157 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
158 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
159 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
160 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
161 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
162 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
163 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
164 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
165 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
166 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
167 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
168 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
169 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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171 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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183 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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185 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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187 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
188 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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192 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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196 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
197 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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199 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
200 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
201 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
202 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
203 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
204 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
205 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
206 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
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500 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
501 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
502 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
503 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
504 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
505 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
506 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
507 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
508 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
509 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
510 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
511 libffi.dylib 0x00007fff2dc8122d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20666cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20699e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010b4fa67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff2066d1b2 kevent64 + 10
1 QtWebEngineCore 0x000000011ac05a2a 0x116ca5000 + 66456106
2 QtWebEngineCore 0x000000011ac05927 0x116ca5000 + 66455847
3 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
4 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
5 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
6 QtWebEngineCore 0x000000011ab8c2ad 0x116ca5000 + 65958573
7 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
8 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2066d1b2 kevent64 + 10
1 QtWebEngineCore 0x000000011ac05a2a 0x116ca5000 + 66456106
2 QtWebEngineCore 0x000000011ac05927 0x116ca5000 + 66455847
3 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
4 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
5 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
6 QtWebEngineCore 0x0000000119aca3a2 0x116ca5000 + 48386978
7 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
8 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011abd3bef 0x116ca5000 + 66251759
4 QtWebEngineCore 0x000000011ab091c9 0x116ca5000 + 65421769
5 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
6 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
7 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
8 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
9 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab9926c 0x116ca5000 + 66011756
5 QtWebEngineCore 0x000000011ab98e6d 0x116ca5000 + 66010733
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20666cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20699e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011abcbd1b 0x116ca5000 + 66219291
3 QtWebEngineCore 0x000000011cc9992d 0x116ca5000 + 100616493
4 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
5 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab09168 0x116ca5000 + 65421672
4 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
5 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
6 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
7 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
8 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2066d1b2 kevent64 + 10
1 QtWebEngineCore 0x000000011ac05a2a 0x116ca5000 + 66456106
2 QtWebEngineCore 0x000000011ac05927 0x116ca5000 + 66455847
3 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
4 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
5 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
6 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
7 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
8 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011abd3bef 0x116ca5000 + 66251759
4 QtWebEngineCore 0x000000011ab091c9 0x116ca5000 + 65421769
5 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
6 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
7 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
8 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
9 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab09168 0x116ca5000 + 65421672
4 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
5 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
6 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
7 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
8 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
9 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x00007fff2066d1b2 kevent64 + 10
1 QtWebEngineCore 0x000000011ac05a2a 0x116ca5000 + 66456106
2 QtWebEngineCore 0x000000011ac05927 0x116ca5000 + 66455847
3 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
4 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
5 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
6 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
7 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
8 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011abd3bef 0x116ca5000 + 66251759
4 QtWebEngineCore 0x000000011ab091c9 0x116ca5000 + 65421769
5 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
6 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
7 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
8 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
9 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab9926c 0x116ca5000 + 66011756
5 QtWebEngineCore 0x000000011ab98ecd 0x116ca5000 + 66010829
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011abd3bef 0x116ca5000 + 66251759
4 QtWebEngineCore 0x000000011ab091c9 0x116ca5000 + 65421769
5 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
6 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
7 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
8 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
9 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 15:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab9926c 0x116ca5000 + 66011756
5 QtWebEngineCore 0x000000011ab98ddd 0x116ca5000 + 66010589
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011abd3bef 0x116ca5000 + 66251759
4 QtWebEngineCore 0x000000011ab091c9 0x116ca5000 + 65421769
5 QtWebEngineCore 0x000000011ab82a5c 0x116ca5000 + 65919580
6 QtWebEngineCore 0x000000011ab3a998 0x116ca5000 + 65624472
7 QtWebEngineCore 0x000000011aba4eb8 0x116ca5000 + 66059960
8 QtWebEngineCore 0x000000011aba504a 0x116ca5000 + 66060362
9 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
10 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab98f9a 0x116ca5000 + 66011034
5 QtWebEngineCore 0x000000011ab98e0d 0x116ca5000 + 66010637
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 18:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20791ebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2079059f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff2078f9ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff2311fb7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 19:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab9926c 0x116ca5000 + 66011756
5 QtWebEngineCore 0x000000011ab98e6d 0x116ca5000 + 66010733
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 20:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2066429a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2066460c mach_msg + 60
2 QtWebEngineCore 0x000000011abd3e26 0x116ca5000 + 66252326
3 QtWebEngineCore 0x000000011ab987bf 0x116ca5000 + 66009023
4 QtWebEngineCore 0x000000011ab9926c 0x116ca5000 + 66011756
5 QtWebEngineCore 0x000000011ab98ddd 0x116ca5000 + 66010589
6 QtWebEngineCore 0x000000011abcc908 0x116ca5000 + 66222344
7 libsystem_pthread.dylib 0x00007fff206998fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20695443 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff20695420 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff20695420 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff20695420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010b16be00 rcx: 0x00007fd65c5dd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fd65c5dda10 rsp: 0x00007fd65c5dd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000010b16be00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007fd65f1e7101 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2066a90e rfl: 0x0000000000000246 cr2: 0x00000001079fa630
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x1077b9000 - 0x107b9cfff +org.python.python (3.11.2, [c] 2001-2023 Python Software Foundation. - 3.11.2) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
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0x10835b000 - 0x10835efff +_bz2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
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0x1084e3000 - 0x1084eafff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x1084f7000 - 0x1084fefff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x10850f000 - 0x108512fff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x10851f000 - 0x108522fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x10852f000 - 0x108536fff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x108643000 - 0x108646fff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x108653000 - 0x108766fff +libarrays.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x108793000 - 0x10879afff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x1088a7000 - 0x108d5afff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x108ed3000 - 0x109515fff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x109550000 - 0x10959dfff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
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0x7fff340fd000 - 0x7fff34162fff com.apple.proactive.support.ProactiveSupport (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveSupport.framework/Versions/A/ProactiveSupport
0x7fff34163000 - 0x7fff3416dfff com.apple.corerecents (1.0 - 1) /System/Library/PrivateFrameworks/CoreRecents.framework/Versions/A/CoreRecents
0x7fff3416e000 - 0x7fff3419ffff com.apple.iCalendar (7.0 - 833) /System/Library/PrivateFrameworks/iCalendar.framework/Versions/A/iCalendar
0x7fff341a0000 - 0x7fff34210fff com.apple.CalendarFoundation (8.0 - 1178.5.2) /System/Library/PrivateFrameworks/CalendarFoundation.framework/Versions/A/CalendarFoundation
0x7fff34211000 - 0x7fff34213fff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff34214000 - 0x7fff34220fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff344b4000 - 0x7fff34787fff com.apple.spotlight.index (10.7.0 - 2150.30) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff347a0000 - 0x7fff347f0fff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff34927000 - 0x7fff34976fff com.apple.CalDAV (8.0 - 795) /System/Library/PrivateFrameworks/CalDAV.framework/Versions/A/CalDAV
0x7fff34977000 - 0x7fff34a14fff com.apple.CoreSuggestions (1.0 - 1115.519.0.1) /System/Library/PrivateFrameworks/CoreSuggestions.framework/Versions/A/CoreSuggestions
0x7fff34a15000 - 0x7fff34b9ffff com.apple.ical.EventKit (3.0 - 1414.5.1) /System/Library/Frameworks/EventKit.framework/Versions/A/EventKit
0x7fff34ba0000 - 0x7fff34e75fff com.apple.CalendarPersistence (8.0 - 1071.4.5.2) /System/Library/PrivateFrameworks/CalendarPersistence.framework/Versions/A/CalendarPersistence
0x7fff34e76000 - 0x7fff34e9bfff com.apple.CalendarAgentLink (8.0 - 250) /System/Library/PrivateFrameworks/CalendarAgentLink.framework/Versions/A/CalendarAgentLink
0x7fff34e9c000 - 0x7fff34ea6fff com.apple.RTCReporting (11.85.2 - 11.85.2) /System/Library/PrivateFrameworks/RTCReporting.framework/Versions/A/RTCReporting
0x7fff3504e000 - 0x7fff35050fff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff35068000 - 0x7fff3507dfff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff350d3000 - 0x7fff3513efff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff35204000 - 0x7fff35207fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff35251000 - 0x7fff35645fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff3567d000 - 0x7fff35af5fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35df1000 - 0x7fff35df8fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff36332000 - 0x7fff365c6fff libAWDSupportFramework.dylib (4205) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libAWDSupportFramework.dylib
0x7fff3663a000 - 0x7fff3666afff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff3666b000 - 0x7fff3668bfff com.apple.MarkupUI (1.0 - 383.6.1) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff3668c000 - 0x7fff3669ffff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff366a0000 - 0x7fff366c3fff com.apple.openscripting (1.7 - 190.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff366c4000 - 0x7fff366c7fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff366c8000 - 0x7fff366cbfff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff366cc000 - 0x7fff366cffff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff366d0000 - 0x7fff366d7fff com.apple.ImageCapture (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff366d8000 - 0x7fff378c8fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.19) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37934000 - 0x7fff37a46fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37a47000 - 0x7fff37adafff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37adb000 - 0x7fff37d25fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff380c1000 - 0x7fff3816efff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff3816f000 - 0x7fff38171fff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff38721000 - 0x7fff38730fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38731000 - 0x7fff38858fff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38c2b000 - 0x7fff38cb1fff com.apple.coredav (1.0.1 - 889.0.0.4) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff38cb2000 - 0x7fff38d07fff com.apple.ExchangeWebServices (8.0 - 814.110.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38d08000 - 0x7fff38d48fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38e44000 - 0x7fff38e44fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff3902a000 - 0x7fff39062fff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff39063000 - 0x7fff3906ffff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff39070000 - 0x7fff390b3fff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff390b4000 - 0x7fff390d3fff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff394f7000 - 0x7fff394f7fff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff394f8000 - 0x7fff394fffff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff39500000 - 0x7fff3950efff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff3950f000 - 0x7fff39526fff libAccessibility.dylib (2885.49.1) /usr/lib/libAccessibility.dylib
0x7fff3bf5d000 - 0x7fff3bf7ffff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bf80000 - 0x7fff3c017fff com.apple.AirPlaySync (1.0 - 2780.10.4.1.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cba8000 - 0x7fff3cc2bfff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3cc2c000 - 0x7fff3cc2ffff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3cc30000 - 0x7fff3cc33fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cd2c000 - 0x7fff3cd2cfff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cee6000 - 0x7fff3cf05fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d052000 - 0x7fff3d0a8fff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3d0a9000 - 0x7fff3d0c6fff com.apple.sidecar-core (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d0c7000 - 0x7fff3d0cafff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d4e2000 - 0x7fff3d4e8fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d659000 - 0x7fff3d670fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.19) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d823000 - 0x7fff3d82efff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d843000 - 0x7fff3d855fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d856000 - 0x7fff3d859fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d872000 - 0x7fff3d9e1fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d9e2000 - 0x7fff3dc3dfff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3dc3e000 - 0x7fff3dd54fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dd55000 - 0x7fff3dd66fff com.apple.sidecar-ui (1.0 - 231.0.3) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e389000 - 0x7fff3e3ebfff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e3ec000 - 0x7fff3e411fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e5f0000 - 0x7fff3e65cfff com.apple.Safari.Core (16611 - 16611.3.10.1.19) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e65d000 - 0x7fff3e7bffff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e7c0000 - 0x7fff3eaa1fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3eacd000 - 0x7fff3ebf5fff com.apple.AnnotationKit (1.0 - 383.6.1) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ebf6000 - 0x7fff3f096fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f097000 - 0x7fff3f17ffff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fec6000 - 0x7fff3ff43fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff410df000 - 0x7fff410e2fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41507000 - 0x7fff41525fff libCGInterfaces.dylib (544.6) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42ba5000 - 0x7fff43905fff libfaceCore.dylib (4.3.2) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff43906000 - 0x7fff43a19fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff43a1a000 - 0x7fff43a32fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43a33000 - 0x7fff43a92fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43a93000 - 0x7fff43aacfff com.apple.SafariFoundation (16611 - 16611.3.10.1.19) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43aad000 - 0x7fff43ab3fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43ab4000 - 0x7fff43d27fff com.apple.RawCamera.bundle (9.10.0 - 1450.3.1) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44590000 - 0x7fff44594fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45f0b000 - 0x7fff45f0efff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff465fa000 - 0x7fff46605fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47c2f000 - 0x7fff47c70fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff484be000 - 0x7fff484d9fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff516c2000 - 0x7fff516effff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff516f0000 - 0x7fff5170afff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff5170b000 - 0x7fff517aafff com.apple.Symbolication (12.5 - 64544.70.3) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff5199a000 - 0x7fff5199dfff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff54032000 - 0x7fff54068fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55662000 - 0x7fff55665fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff61e0c000 - 0x7fff61e83fff com.apple.driver.AppleIntelHD5000GraphicsMTLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsMTLDriver
0x7fff65d13000 - 0x7fff66226fff com.apple.driver.AppleIntelHD5000GraphicsGLDriver (16.5.14 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsGLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsGLDriver
0x7fff6975a000 - 0x7fff6975efff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bba5000 - 0x7fff6bbabfff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bbac000 - 0x7fff6bbb0fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bbb1000 - 0x7fff6bbc0fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bbc1000 - 0x7fff6bbc3fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bbc4000 - 0x7fff6bbccfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bbcd000 - 0x7fff6bc00fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bc01000 - 0x7fff6bc3dfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bc3e000 - 0x7fff6bdd1fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bdd2000 - 0x7fff6bddcfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bddd000 - 0x7fff6bf5afff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bf5b000 - 0x7fff6bf83fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d21c000 - 0x7fff6d274fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e31e000 - 0x7fff6e325fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e326000 - 0x7fff6e40dfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f993000 - 0x7fff6f9a5fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73cc3000 - 0x7fff73ccefff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73ee4000 - 0x7fff73efcfff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7780b000 - 0x7fff77812fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=3.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 2880K 6
CG image 200K 19
CoreAnimation 276K 18
CoreGraphics 12K 2
CoreUI image data 3608K 29
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 2.1G 619
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 92K 23
Stack 154.7M 24
Stack Guard 56.0M 1
VM_ALLOCATE 352.4M 242
__DATA 38.4M 647
__DATA_CONST 26.9M 319
__DATA_DIRTY 1729K 221
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.2M 261
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 658.9M 634
__UNICODE 588K 1
mapped file 271.6M 51
shared memory 2960K 23
=========== ======= =======
TOTAL 4.6G 3167
TOTAL, minus reserved VM space 4.3G 3167
System Profile:
Network Service: Wi-Fi, AirPort, en0
Thunderbolt Bus: MacBook Pro, Apple Inc., 17.2
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
USB Device: USB 3.0 Bus
USB Device: SSD-SCTU3A
USB Device: Apple Internal Keyboard / Trackpad
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Serial ATA Device: APPLE SSD SD0128F, 121.33 GB
Model: MacBookPro11,1, BootROM 478.0.0.0.0, 2 processors, Dual-Core Intel Core i7, 2.8 GHz, 16 GB, SMC 2.16f68
Graphics: kHW_IntelIrisItem, Intel Iris, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x112), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1680.11)
Bluetooth: Version 8.0.5d7, 3 services, 19 devices, 1 incoming serial ports
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Volumes/Noha-data2-GspD/Phenix Tanaka
> lab/Class2-J544/RealSpaceRefine_9/Pentadecamer_fromC_coot_19_real_space_refined.pdb"
Chain information for Pentadecamer_fromC_coot_19_real_space_refined.pdb #1
---
Chain | Description
A B C D E F G H I J K L M N O | No description available
> show cartoons
> show atoms
> hide atoms
> ui tool show "Side View"
> open "/Volumes/Noha-data2-GspD/Phenix Tanaka
> lab/Class0-J542/RealSpaceRefine_7/Class0-J542-Ref7-15mer.pdb"
Chain information for Class0-J542-Ref7-15mer.pdb #2
---
Chain | Description
A B C D E F G H I J K L M N O | No description available
> hide atoms
> show atoms
> show cartoons
> hide atoms
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Pentadecamer_fromC_coot_19_real_space_refined.pdb, chain A (#1)
with Class0-J542-Ref7-15mer.pdb, chain A (#2), sequence alignment score =
2297.9
RMSD between 304 pruned atom pairs is 0.485 angstroms; (across all 482 pairs:
3.705)
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Volumes/Noha-
> data2-GspD/GspD/NE240312/3Dand3DVA/Combined/Class0/cryosparc_P62_J515_004_volume_map_sharp.mrc
Opened cryosparc_P62_J515_004_volume_map_sharp.mrc as #1, grid size
540,540,540, pixel 0.788, shown at level 0.0512, step 4, values float32
OpenGL version: 4.1 INTEL-16.5.14
OpenGL renderer: Intel Iris OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,1
Processor Name: Dual-Core Intel Core i7
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 478.0.0.0.0
SMC Version (system): 2.16f68
Software:
System Software Overview:
System Version: macOS 11.7.10 (20G1427)
Kernel Version: Darwin 20.6.0
Time since boot: 40 minutes
Graphics/Displays:
Intel Iris:
Chipset Model: Intel Iris
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a2e
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.1
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.13
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.3
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.0
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.0
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.5.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.3
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.8
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
Pillow: 10.0.1
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.7
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.5
sphinxcontrib-htmlhelp: 2.0.4
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.6
sphinxcontrib-serializinghtml: 1.1.9
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.3
urllib3: 2.1.0
wcwidth: 0.2.12
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 4 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 4 months ago
| Resolution: | → limitation |
|---|---|
| Status: | assigned → closed |
This ChimeraX crash is caused by unstable Intel Mac graphics drivers. If you used a newer ChimeraX version it would have reported to you the following the next time you started ChimeraX:
"This is an Apple Intel or AMD graphics driver crash that may be related to showing a scene that is complex and uses too much graphics memory. Apple is unlikely to ever fix this since they no longer make computers with Intel or AMD graphics. The crash does not happen with Apple M1,M2,M3... graphics."
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Reported by Noha Elshamy