The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\Users\Dell\Chalcones\Papain\1bqi.pdb format pdb
1bqi.pdb title:
Use of papain As A model for the structure-based design of cathepsin K
inhibitors. Crystal structures of two papain inhibitor complexes demonstrate
binding to S'-subsites. [more info...]
Chain information for 1bqi.pdb #1
---
Chain | Description | UniProt
A | papain | PAPA1_CARPA 1-212
Non-standard residues in 1bqi.pdb #1
---
SBA — carbobenzyloxy-(L)-leucinyl-(L)leucinylmethoxymethylketone
> select ::name="SBA"
29 atoms, 29 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="HOH"
42 atoms, 42 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> open C:/Users/Dell/Chalcones/Papain/Docking_Thiofen/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_Thiofen/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T10:17:15Z
> select ::name="UNK"
15 atoms, 16 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false distSlop 1.0 twoColors true intraMol
> false select true reveal true retainCurrent true
3 hydrogen bonds found
1 strict hydrogen bonds found
> hbonds sel dashes 6 intraModel false distSlop 1.0 twoColors true intraMol
> false select true reveal true retainCurrent true
3 hydrogen bonds found
1 strict hydrogen bonds found
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false twoColors true intraMol false select
> true reveal true retainCurrent true
2 hydrogen bonds found
1 strict hydrogen bonds found
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
2 hydrogen bonds found
> open C:/Users/Dell/Chalcones/Papain/Docking_ChalconeH_centrado/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_ChalconeH_centrado/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T09:49:15Z
> open C:/Users/Dell/Chalcones/Papain/Docking_ChalchoneH_Open/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_ChalchoneH_Open/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T10:01:44Z
> open C:/Users/Dell/Chalcones/Papain/Docking_centrado/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_centrado/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-16T15:04:57Z
> open C:/Users/Dell/Chalcones/Papain/Docking_Cego2/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_Cego2/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-16T15:48:44Z
> open C:/Users/Dell/Chalcones/Papain/Docking_Thiophen_open/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_Thiophen_open/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T10:31:25Z
> select add #8
19 atoms, 16 bonds, 4 residues, 3 models selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
4 hydrogen bonds found
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
4 hydrogen bonds found
> select add #7
23 atoms, 17 bonds, 7 residues, 5 models selected
> select add #8
37 atoms, 33 bonds, 7 residues, 5 models selected
> select subtract #8
22 atoms, 17 bonds, 6 residues, 4 models selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
5 hydrogen bonds found
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
5 hydrogen bonds found
> select add #8
23 atoms, 16 bonds, 8 residues, 5 models selected
> select add #7
38 atoms, 33 bonds, 8 residues, 5 models selected
> select add #4
52 atoms, 49 bonds, 8 residues, 5 models selected
> select subtract #4
37 atoms, 33 bonds, 7 residues, 4 models selected
> select subtract #7
21 atoms, 16 bonds, 6 residues, 3 models selected
> select subtract #8
6 atoms, 5 residues, 2 models selected
> select add #2
19 atoms, 16 bonds, 5 residues, 2 models selected
> select subtract #2
4 atoms, 4 residues, 1 model selected
> select add #1
1655 atoms, 1702 bonds, 212 residues, 1 model selected
> mlp sel
Map values for surface "1bqi.pdb_A SES surface": minimum -32.62, mean -4.83,
maximum 21.9
To also show corresponding color key, enter the above mlp command and add key
true
> hide sel surfaces
> select subtract #1
1 model selected
> open C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe_centrado/results/1.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe_centrado/results/1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T10:53:57Z
> open
> C:/Users/Dell/Chalcones/Papain/Docking_3,4Ome_cego/results/Chalcone-3,4OMe_1bqi_out08.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_3,4Ome_cego/results/Chalcone-3,4OMe_1bqi_out08.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Generated by AMDock from AutoDock4 result
Ignored bad PDB record found on line 3
REMARK ENERGY = -6.31
2 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> undo
[Repeated 1 time(s)]
> select add #10
1657 atoms, 1703 bonds, 213 residues, 3 models selected
> select subtract #1
2 atoms, 1 bond, 1 residue, 2 models selected
> close #10
> open
> C:/Users/Dell/Chalcones/Papain/Docking_3,4Ome_cego/results/Chalcone-3,4OMe_1bqi_out01.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_3,4Ome_cego/results/Chalcone-3,4OMe_1bqi_out01.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T12:58:50Z
> hide #9 models
> hide #8 models
> hide #7 models
> show #7 models
> hide #7 models
> show #8 models
> show #9 models
> close #10
> close #9
> open
> C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe/results/Chalcone-3,4OMe_1bqi_out01.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe/results/Chalcone-3,4OMe_1bqi_out01.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T13:13:54Z
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #6 models
> hide #8 models
> hide #5 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #2 models
> select add #9
19 atoms, 20 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
0 hydrogen bonds found
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
Atom specifier selects no atoms
> select add #9
19 atoms, 20 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
0 hydrogen bonds found
> hide #9 models
> show #8 models
> show #7 models
> show #6 models
> show #5 models
> open
> C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe_Cego2/results/Chalcone-3,4OMe_1bqi_out05.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_3,4OMe_Cego2/results/Chalcone-3,4OMe_1bqi_out05.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T13:27:35Z
> hide #7 models
> select add #10
19 atoms, 20 bonds, 1 residue, 1 model selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
1 hydrogen bonds found
> select add #10
20 atoms, 20 bonds, 2 residues, 3 models selected
> select subtract #10
1 atom, 1 residue, 2 models selected
> show #9 models
> show #7 models
> open
> C:/Users/Dell/Chalcones/Papain/Docking_Naphitol_POcket/results/Chalcone-
> Naftil_1bqi_out01.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_Naphitol_POcket/results/Chalcone-
Naftil_1bqi_out01.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T13:36:24Z
> show #4 models
> hide #4 models
> show #4 models
> show #2 models
> select add #2
16 atoms, 16 bonds, 2 residues, 3 models selected
> hide #3 models
> hide #4 models
> hide #5 models
> hide #6 models
> show #6 models
> show #5 models
> show #4 models
> show #3 models
> open C:/Users/Dell/Chalcones/Papain/Docking_Nafitil_cego/results/Chalcone-
> Naftil_1bqi_out01.pdb
Summary of feedback from opening
C:/Users/Dell/Chalcones/Papain/Docking_Nafitil_cego/results/Chalcone-
Naftil_1bqi_out01.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK BIOVIA PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2025-07-17T13:47:13Z
> select add #12
35 atoms, 37 bonds, 3 residues, 4 models selected
> ui tool show H-Bonds
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
5 hydrogen bonds found
> hbonds sel dashes 6 intraModel false intraMol false select true reveal true
> retainCurrent true
7 hydrogen bonds found
> hide #11 models
> hide #10 models
> hide #9 models
> hide #8 models
> hide #7 models
> hide #6 models
> hide #5 models
> show #5 models
> hide #4 models
> hide #5 models
> hide #3 models
> hide #2 models
> hide #!1 models
> show #!1 models
> show #3 models
> select add #12
29 atoms, 21 bonds, 10 residues, 8 models selected
> select add #11
47 atoms, 42 bonds, 10 residues, 8 models selected
> select subtract #11
28 atoms, 21 bonds, 9 residues, 7 models selected
> select add #10
46 atoms, 41 bonds, 9 residues, 7 models selected
> select subtract #10
27 atoms, 21 bonds, 8 residues, 6 models selected
> select add #7
42 atoms, 38 bonds, 8 residues, 6 models selected
> select subtract #7
26 atoms, 21 bonds, 7 residues, 5 models selected
> select add #4
40 atoms, 37 bonds, 7 residues, 5 models selected
> select subtract #4
25 atoms, 21 bonds, 6 residues, 4 models selected
> select add #2
38 atoms, 37 bonds, 6 residues, 4 models selected
> select subtract #2
23 atoms, 21 bonds, 5 residues, 3 models selected
> select add #1
1674 atoms, 1723 bonds, 213 residues, 3 models selected
> select subtract #1
19 atoms, 21 bonds, 1 residue, 2 models selected
> ui tool show Contacts
> contacts sel resSeparation 5 intraModel false ignoreHiddenModels true select
> true reveal true
65 contacts
> contacts sel resSeparation 5 intraModel false ignoreHiddenModels true select
> true reveal true
65 contacts
> select add #12
45 atoms, 21 bonds, 10 residues, 3 models selected
> select subtract #12
26 atoms, 9 residues, 2 models selected
> show #11 models
> hide #11 models
> hide #12 models
> hide #13 models
> close #13
> show #12 models
> show #10 models
> show #8 models
> show #6 models
> show #5 models
> hide #5 models
> show #4 models
> hide #4 models
> show #5 models
> hide #5 models
> show #7 models
> hide #6 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #2 models
> hide #2 models
> select add #1
1655 atoms, 1702 bonds, 212 residues, 2 models selected
> mlp sel
Map values for surface "1bqi.pdb_A SES surface": minimum -32.62, mean -4.83,
maximum 21.9
To also show corresponding color key, enter the above mlp command and add key
true
> color sel byhetero
> color bfactor sel
1655 atoms, 212 residues, 1 surfaces, atom bfactor range 0 to 98.9
> interfaces select & ~solvent
Missing or invalid "atoms" argument: invalid atoms specifier
> rainbow sel
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 1bqi.pdb_A SES surface #1.1: minimum, -7.91, mean 1.77,
maximum 11.40
To also show corresponding color key, enter the above coulombic command and
add key true
> ui mousemode right "color key"
> ui tool show "Measure Volume and Area"
> toolshed show
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show "Find Cavities"
> kvfinder #1
13 cavities found for 1bqi.pdb #1
1bqi.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.6 | | 144.72 | 165.69 | 670 | 0 | 0
1.2.11 | | 74.52 | 86.06 | 345 | 3.23 | 1.07
1.2.7 | | 55.51 | 52.53 | 257 | 3 | 1
1.2.2 | | 43.85 | 58.72 | 203 | 0 | 0
1.2.9 | | 25.27 | 45.14 | 117 | 0 | 0
1.2.1 | | 23.54 | 36.2 | 109 | 2.16 | 0.79
1.2.4 | | 19.22 | 27.99 | 89 | 2.08 | 0.87
1.2.12 | | 16.85 | 32.3 | 78 | 0 | 0
1.2.10 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.2.13 | | 10.8 | 23.21 | 50 | 1.8 | 0.98
1.2.3 | | 7.56 | 16.23 | 35 | 0.85 | 0.24
1.2.5 | | 6.7 | 12.58 | 31 | 1.04 | 0.31
1.2.8 | | 5.62 | 14.45 | 26 | 0.85 | 0.26
> kvfinder #1
13 cavities found for 1bqi.pdb #1
1bqi.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.6 | | 144.72 | 165.69 | 670 | 0 | 0
1.2.11 | | 74.52 | 86.06 | 345 | 3.23 | 1.07
1.2.7 | | 55.51 | 52.53 | 257 | 3 | 1
1.2.2 | | 43.85 | 58.72 | 203 | 0 | 0
1.2.9 | | 25.27 | 45.14 | 117 | 0 | 0
1.2.1 | | 23.54 | 36.2 | 109 | 2.16 | 0.79
1.2.4 | | 19.22 | 27.99 | 89 | 2.08 | 0.87
1.2.12 | | 16.85 | 32.3 | 78 | 0 | 0
1.2.10 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.2.13 | | 10.8 | 23.21 | 50 | 1.8 | 0.98
1.2.3 | | 7.56 | 16.23 | 35 | 0.85 | 0.24
1.2.5 | | 6.7 | 12.58 | 31 | 1.04 | 0.31
1.2.8 | | 5.62 | 14.45 | 26 | 0.85 | 0.26
> kvfinder #1
13 cavities found for 1bqi.pdb #1
1bqi.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.6 | | 144.72 | 165.69 | 670 | 0 | 0
1.2.11 | | 74.52 | 86.06 | 345 | 3.23 | 1.07
1.2.7 | | 55.51 | 52.53 | 257 | 3 | 1
1.2.2 | | 43.85 | 58.72 | 203 | 0 | 0
1.2.9 | | 25.27 | 45.14 | 117 | 0 | 0
1.2.1 | | 23.54 | 36.2 | 109 | 2.16 | 0.79
1.2.4 | | 19.22 | 27.99 | 89 | 2.08 | 0.87
1.2.12 | | 16.85 | 32.3 | 78 | 0 | 0
1.2.10 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.2.13 | | 10.8 | 23.21 | 50 | 1.8 | 0.98
1.2.3 | | 7.56 | 16.23 | 35 | 0.85 | 0.24
1.2.5 | | 6.7 | 12.58 | 31 | 1.04 | 0.31
1.2.8 | | 5.62 | 14.45 | 26 | 0.85 | 0.26
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.13596 Core Profile Forward-Compatible Context 20.10.35.02 27.20.1034.6
OpenGL renderer: AMD Radeon R7 M460
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: pt_BR.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: Dell Inc.
Model: Inspiron 5570
OS: Microsoft Windows 11 Home Single Language (Build 26100)
Memory: 8,482,140,160
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-8250U CPU @ 1.60GHz
OSLanguage: pt-BR
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2025.6.15
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
narwhals: 1.46.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 2.2.6
numpy: 1.26.4
nvidia-cuda-cupti-cu12: 12.9.79
nvidia-cuda-nvcc-cu12: 12.9.86
nvidia-cuda-nvrtc-cu12: 12.9.86
nvidia-cuda-runtime-cu12: 12.9.79
nvidia-cufft-cu12: 11.4.1.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
plotly: 6.0.1
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pyKVFinder: 0.8.1
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tomlkit: 0.13.2
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
I cannot reproduce this on our Windows 11 machine. It's also a mystery to me why there are 3 consecutive identical kvfinder commands in the log. I think I've seen that in a few other tickets. And only the third immediately gives the error.